BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027602
         (221 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
           Inhibiting Protein), A Leucine Rich Repeat Protein
           Involved In Plant Defense
          Length = 313

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 72/183 (39%), Gaps = 33/183 (18%)

Query: 34  CLESEREVLLRFKQDLQDPSNRLASWIGDGDCC--LWAGVICDNVTG-------HILELN 84
           C   +++ LL+ K+DL +P+  L+SW+   DCC   W GV+CD  T         +  LN
Sbjct: 3   CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 85  LRNPFNYYVQPDQFEANP--RSMLVGKVNPXXXXXXXXXXXXXXFNDFQGVQIPRFIGSM 142
           L  P   Y  P      P    + +G +                 N+  G  IP  I  +
Sbjct: 62  LPKP---YPIPSSLANLPYLNFLYIGGI-----------------NNLVG-PIPPAIAKL 100

Query: 143 GNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTR 202
               YL +  +   G IP  L  + +L  LD S N L       +S L  L  + F   R
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 203 KMG 205
             G
Sbjct: 161 ISG 163


>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
 pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
          Length = 768

 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 35/71 (49%)

Query: 135 IPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLE 194
           IP+ IGSM     LNL  +   G IP ++G+L  L  LDLS N L       +S L+ L 
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707

Query: 195 HLDFSTTRKMG 205
            +D S     G
Sbjct: 708 EIDLSNNNLSG 718



 Score = 38.1 bits (87), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%)

Query: 134 QIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNF 178
           +IP++IG + N   L L  + F G IP +LG+  SL +LDL+ N 
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549



 Score = 28.9 bits (63), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 13/136 (9%)

Query: 74  DNVTGHILELNLRNPFN----YYVQPDQFEANPRSMLVGKVNPXXXXXXXXXXXXXXFND 129
           +N +G IL    +NP N     Y+Q + F         GK+ P              FN 
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGF--------TGKIPPTLSNCSELVSLHLSFNY 429

Query: 130 FQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSG 189
             G  IP  +GS+   + L L  +   G IP +L  + +L  L L  N L       LS 
Sbjct: 430 LSGT-IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

Query: 190 LSFLEHLDFSTTRKMG 205
            + L  +  S  R  G
Sbjct: 489 CTNLNWISLSNNRLTG 504



 Score = 27.3 bits (59), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 128 NDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLS-SLRYLDLSRN 177
           N+F G      +  M   K L+L  ++F G +P  L NLS SL  LDLS N
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378


>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
           Ectodomain
 pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
           Brassinolide
          Length = 772

 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 35/71 (49%)

Query: 135 IPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLE 194
           IP+ IGSM     LNL  +   G IP ++G+L  L  LDLS N L       +S L+ L 
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704

Query: 195 HLDFSTTRKMG 205
            +D S     G
Sbjct: 705 EIDLSNNNLSG 715



 Score = 38.1 bits (87), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%)

Query: 134 QIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNF 178
           +IP++IG + N   L L  + F G IP +LG+  SL +LDL+ N 
Sbjct: 502 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546



 Score = 28.5 bits (62), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 13/136 (9%)

Query: 74  DNVTGHILELNLRNPFN----YYVQPDQFEANPRSMLVGKVNPXXXXXXXXXXXXXXFND 129
           +N +G IL    +NP N     Y+Q + F         GK+ P              FN 
Sbjct: 375 NNFSGPILPNLCQNPKNTLQELYLQNNGF--------TGKIPPTLSNCSELVSLHLSFNY 426

Query: 130 FQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSG 189
             G  IP  +GS+   + L L  +   G IP +L  + +L  L L  N L       LS 
Sbjct: 427 LSGT-IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485

Query: 190 LSFLEHLDFSTTRKMG 205
            + L  +  S  R  G
Sbjct: 486 CTNLNWISLSNNRLTG 501



 Score = 26.9 bits (58), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 128 NDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLS-SLRYLDLSRN 177
           N+F G      +  M   K L+L  ++F G +P  L NLS SL  LDLS N
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375


>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
           Hagfish Vlrb.61
 pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
           Hagfish Vlrb.61
 pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
           Hagfish Vlrb.61
 pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
           Hagfish Vlrb.61
          Length = 306

 Score = 32.0 bits (71), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 39/84 (46%)

Query: 128 NDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWL 187
           N FQ   +P     + N  +L+L   Q   + P    +LSSL+ L++S N  + ++    
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219

Query: 188 SGLSFLEHLDFSTTRKMGFTDTKL 211
             L+ L+ LD+S    M     +L
Sbjct: 220 KCLNSLQVLDYSLNHIMTSKKQEL 243



 Score = 31.2 bits (69), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 152 GSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDF 198
           G  F G         +SL+YLDLS N +  ++  +L GL  LEHLDF
Sbjct: 63  GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDF 108


>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
           And T399i In Complex With Md-2 And Lps
 pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
           And T399i In Complex With Md-2 And Lps
          Length = 635

 Score = 32.0 bits (71), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 39/84 (46%)

Query: 128 NDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWL 187
           N FQ   +P     + N  +L+L   Q   + P    +LSSL+ L++S N  + ++    
Sbjct: 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 538

Query: 188 SGLSFLEHLDFSTTRKMGFTDTKL 211
             L+ L+ LD+S    M     +L
Sbjct: 539 KCLNSLQVLDYSLNHIMTSKKQEL 562



 Score = 28.9 bits (63), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 1/31 (3%)

Query: 168 SLRYLDLSRNFLYVVNFGWLSGLSFLEHLDF 198
           SL+YLDLS N +  ++  +L GL  LEHLDF
Sbjct: 398 SLKYLDLSFNGVITMSSNFL-GLEQLEHLDF 427


>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
           Ra Complex
 pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
           Ra Complex
          Length = 605

 Score = 32.0 bits (71), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 39/84 (46%)

Query: 128 NDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWL 187
           N FQ   +P     + N  +L+L   Q   + P    +LSSL+ L++S N  + ++    
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514

Query: 188 SGLSFLEHLDFSTTRKMGFTDTKL 211
             L+ L+ LD+S    M     +L
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQEL 538



 Score = 30.0 bits (66), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 152 GSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDF 198
           G  F G         +SL+YLDLS N +  ++  +L GL  LEHLDF
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDF 403


>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
          Length = 462

 Score = 31.6 bits (70), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 139 IGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDF 198
           + ++ N   L L  +Q   + P  L NL++L  L+LS N   + +   LSGL+ L+ L+F
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN--TISDISALSGLTSLQQLNF 158

Query: 199 STTR 202
           S+ +
Sbjct: 159 SSNQ 162


>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
 pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
          Length = 440

 Score = 30.4 bits (67), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 134 QIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFL 193
           ++P  I +  N + LNL  +Q   +  +   +L  L  L LSRN +  +  G  +GL+ L
Sbjct: 57  EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 194 EHLDFSTTR 202
             L+    R
Sbjct: 115 NTLELFDNR 123


>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
           Hagfish Vlrb.61
          Length = 570

 Score = 30.0 bits (66), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 152 GSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDF 198
           G  F G         +SL+YLDLS N +  ++  +L GL  LEHLDF
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDF 403



 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 33/69 (47%)

Query: 128 NDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWL 187
           N FQ   +P     + N  +L+L   Q   + P    +LSSL+ L+++ N L  V  G  
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514

Query: 188 SGLSFLEHL 196
             L+ L+ +
Sbjct: 515 DRLTSLQKI 523


>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
          Length = 452

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 134 QIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFL 193
           ++P+ I S  N +YLNL+ +    +      +L  L  L L RN +  +  G  +GL+ L
Sbjct: 68  EVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125

Query: 194 EHLDF 198
             L+ 
Sbjct: 126 NTLEL 130


>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
 pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
           Lipoteichoic Acid Complex
 pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
          Length = 580

 Score = 28.1 bits (61), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 143 GNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDF 198
            N + L L  S+   +      +L SL +LDLS N L  ++  W   LS L++L+ 
Sbjct: 76  ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 131


>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
           Binding Of A Tri-acylated Lipopeptide
 pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
           Binding Of A Tri-Acylated Lipopeptide
          Length = 549

 Score = 28.1 bits (61), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 143 GNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDF 198
            N + L L  S+   +      +L SL +LDLS N L  ++  W   LS L++L+ 
Sbjct: 50  ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105


>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
           And Immunoglobulin Domain Of Netrin-G Ligand-3
          Length = 411

 Score = 28.1 bits (61), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 25/55 (45%)

Query: 144 NQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDF 198
           N +YLNL  +    +      +L  L  L LS+N +  +  G  +GL  L  L+ 
Sbjct: 36  NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLEL 90


>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
 pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
          Length = 193

 Score = 28.1 bits (61), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 139 IGSMGNQKYLNLLG--------SQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGL 190
           I ++ NQ + N+          ++   + P     L SLR L L  N + VV  G  + L
Sbjct: 66  ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL 125

Query: 191 SFLEHL 196
           S L HL
Sbjct: 126 SALSHL 131


>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
           Of Netrin-G Ligand-3
 pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
           Of Netrin-G Ligand-3
          Length = 321

 Score = 27.7 bits (60), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 26/59 (44%)

Query: 144 NQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTR 202
           N +YLNL  +    +      +L  L  L LS+N +  +  G  +GL  L  L+    R
Sbjct: 36  NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNR 94


>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
 pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
 pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
 pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
          Length = 606

 Score = 27.3 bits (59), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 155 FGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDF--STTRKM 204
           F G   +     +SLR+LDLS N   +++  ++ GL  L+HLDF  ST +++
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFM-GLEELQHLDFQHSTLKRV 414


>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
          Length = 599

 Score = 27.3 bits (59), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 155 FGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDF--STTRKM 204
           F G   +     +SLR+LDLS N   +++  ++ GL  L+HLDF  ST +++
Sbjct: 359 FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFM-GLEELQHLDFQHSTLKRV 409


>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
           Horikoshii Ot3
          Length = 397

 Score = 27.3 bits (59), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 8/43 (18%)

Query: 149 NLLGSQFGGVIPHQL--------GNLSSLRYLDLSRNFLYVVN 183
           N L  QFG V+PH           +L+   + DL + FLY +N
Sbjct: 329 NKLTDQFGNVLPHVFLXKKGSTPRDLAFKVHTDLGKGFLYAIN 371


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.142    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,314,604
Number of Sequences: 62578
Number of extensions: 240229
Number of successful extensions: 714
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 69
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)