Query 027602
Match_columns 221
No_of_seqs 285 out of 2668
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 12:22:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027602.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027602hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 6.9E-23 1.5E-27 194.6 15.6 176 35-215 27-212 (968)
2 PLN03150 hypothetical protein; 99.8 6.3E-19 1.4E-23 160.0 13.7 156 31-208 366-532 (623)
3 PLN00113 leucine-rich repeat r 99.5 2.5E-14 5.4E-19 136.3 8.4 107 104-212 150-257 (968)
4 PLN03150 hypothetical protein; 99.4 7.6E-13 1.6E-17 120.5 7.2 93 119-213 419-512 (623)
5 KOG0617 Ras suppressor protein 99.3 1.4E-13 3E-18 103.7 -3.8 107 78-204 33-140 (264)
6 KOG0472 Leucine-rich repeat pr 99.0 9.2E-11 2E-15 98.7 1.4 98 104-204 444-541 (565)
7 PF08263 LRRNT_2: Leucine rich 99.0 6E-10 1.3E-14 65.5 4.5 39 36-74 2-43 (43)
8 KOG0472 Leucine-rich repeat pr 99.0 2.5E-11 5.3E-16 102.1 -3.5 103 105-214 193-297 (565)
9 KOG0617 Ras suppressor protein 99.0 5.5E-11 1.2E-15 89.8 -1.4 96 114-214 29-126 (264)
10 KOG4194 Membrane glycoprotein 98.9 7.7E-11 1.7E-15 103.3 -2.8 104 103-209 278-383 (873)
11 PRK15370 E3 ubiquitin-protein 98.9 2.4E-08 5.3E-13 92.4 12.9 41 29-70 55-99 (754)
12 PF14580 LRR_9: Leucine-rich r 98.9 1.4E-09 3.1E-14 83.5 3.7 90 113-206 36-128 (175)
13 KOG4194 Membrane glycoprotein 98.9 2E-09 4.4E-14 94.5 4.9 99 104-204 88-186 (873)
14 PF13855 LRR_8: Leucine rich r 98.9 1.1E-09 2.3E-14 69.5 2.3 58 119-178 2-60 (61)
15 PF13855 LRR_8: Leucine rich r 98.8 2.3E-09 5E-14 67.9 2.9 60 143-203 1-61 (61)
16 KOG0618 Serine/threonine phosp 98.8 9E-10 2E-14 100.8 -1.4 99 103-206 368-467 (1081)
17 KOG0444 Cytoskeletal regulator 98.7 9.7E-10 2.1E-14 97.4 -1.5 97 104-204 88-186 (1255)
18 KOG0444 Cytoskeletal regulator 98.7 1.2E-09 2.5E-14 96.9 -1.5 107 78-203 7-115 (1255)
19 PRK15387 E3 ubiquitin-protein 98.6 3.7E-08 8E-13 91.2 5.7 86 119-215 383-469 (788)
20 KOG0618 Serine/threonine phosp 98.6 5.9E-09 1.3E-13 95.6 -0.2 104 78-202 383-487 (1081)
21 PLN03210 Resistant to P. syrin 98.5 5.9E-07 1.3E-11 87.6 10.2 99 109-210 625-723 (1153)
22 KOG4237 Extracellular matrix p 98.5 8.8E-09 1.9E-13 86.7 -2.8 99 104-203 77-176 (498)
23 PF14580 LRR_9: Leucine-rich r 98.4 7.7E-08 1.7E-12 73.9 1.8 86 114-206 15-103 (175)
24 PLN03210 Resistant to P. syrin 98.4 9.9E-07 2.1E-11 86.0 9.7 101 104-211 788-889 (1153)
25 cd00116 LRR_RI Leucine-rich re 98.4 1.1E-07 2.3E-12 79.5 2.1 88 118-205 137-235 (319)
26 cd00116 LRR_RI Leucine-rich re 98.4 8.7E-08 1.9E-12 80.0 1.3 113 78-206 81-208 (319)
27 PRK15387 E3 ubiquitin-protein 98.4 2E-06 4.3E-11 79.9 9.5 44 104-156 232-275 (788)
28 KOG1259 Nischarin, modulator o 98.4 5E-08 1.1E-12 79.9 -0.8 97 109-208 298-416 (490)
29 KOG4237 Extracellular matrix p 98.3 1.3E-07 2.8E-12 79.9 1.0 95 108-204 263-359 (498)
30 KOG0532 Leucine-rich repeat (L 98.3 7.5E-08 1.6E-12 84.5 -1.1 96 105-206 153-249 (722)
31 PRK15370 E3 ubiquitin-protein 98.3 1.4E-06 2.9E-11 81.0 6.2 55 119-180 242-296 (754)
32 KOG4579 Leucine-rich repeat (L 98.3 5.7E-08 1.2E-12 70.9 -2.4 116 78-215 53-170 (177)
33 PF12799 LRR_4: Leucine Rich r 98.3 1.3E-06 2.7E-11 51.5 3.5 36 119-156 2-37 (44)
34 KOG1259 Nischarin, modulator o 98.2 2E-07 4.3E-12 76.5 -0.1 91 107-203 273-364 (490)
35 PF12799 LRR_4: Leucine Rich r 98.2 2.2E-06 4.8E-11 50.4 3.4 37 143-180 1-37 (44)
36 KOG4658 Apoptotic ATPase [Sign 98.0 2.1E-06 4.6E-11 81.0 2.3 87 113-202 566-653 (889)
37 KOG0532 Leucine-rich repeat (L 98.0 3.7E-07 8E-12 80.3 -3.7 100 109-214 112-233 (722)
38 KOG1859 Leucine-rich repeat pr 97.9 3.6E-07 7.9E-12 82.5 -4.5 90 110-206 179-269 (1096)
39 COG4886 Leucine-rich repeat (L 97.9 6.4E-06 1.4E-10 71.2 2.4 89 109-202 130-220 (394)
40 COG4886 Leucine-rich repeat (L 97.8 5.6E-06 1.2E-10 71.6 1.4 67 109-178 154-220 (394)
41 KOG0531 Protein phosphatase 1, 97.8 1.1E-05 2.4E-10 70.4 2.3 91 112-208 89-179 (414)
42 KOG4579 Leucine-rich repeat (L 97.7 1.8E-06 3.8E-11 63.2 -2.8 87 114-204 49-136 (177)
43 KOG2739 Leucine-rich acidic nu 97.7 2.4E-05 5.3E-10 62.8 2.9 67 139-205 61-130 (260)
44 KOG3207 Beta-tubulin folding c 97.6 1.7E-05 3.7E-10 67.9 0.3 60 143-203 246-313 (505)
45 KOG1644 U2-associated snRNP A' 97.5 0.00014 3E-09 56.6 4.7 84 113-200 59-149 (233)
46 KOG4658 Apoptotic ATPase [Sign 97.4 7.1E-05 1.5E-09 70.9 2.1 91 117-211 544-638 (889)
47 KOG1644 U2-associated snRNP A' 97.4 0.00025 5.4E-09 55.2 4.1 87 117-206 41-128 (233)
48 KOG1859 Leucine-rich repeat pr 97.3 4.4E-06 9.5E-11 75.7 -6.6 96 102-204 195-292 (1096)
49 KOG3207 Beta-tubulin folding c 97.3 8.9E-05 1.9E-09 63.7 1.0 89 114-206 242-341 (505)
50 KOG0531 Protein phosphatase 1, 97.3 7.7E-05 1.7E-09 65.1 0.7 87 115-206 69-155 (414)
51 KOG2982 Uncharacterized conser 96.9 0.00023 5.1E-09 58.6 0.2 88 116-203 69-158 (418)
52 KOG3665 ZYG-1-like serine/thre 96.9 0.00045 9.7E-09 64.0 1.9 95 110-207 165-266 (699)
53 KOG2739 Leucine-rich acidic nu 96.7 0.00066 1.4E-08 54.7 1.4 83 113-198 60-150 (260)
54 KOG1909 Ran GTPase-activating 96.2 0.00062 1.3E-08 57.0 -1.6 92 112-203 207-310 (382)
55 KOG1909 Ran GTPase-activating 96.1 0.0025 5.3E-08 53.6 1.4 10 79-88 93-102 (382)
56 PF00560 LRR_1: Leucine Rich R 96.1 0.0017 3.7E-08 32.0 0.2 20 192-212 1-20 (22)
57 KOG3665 ZYG-1-like serine/thre 96.0 0.0031 6.7E-08 58.6 1.7 87 116-204 146-233 (699)
58 PF00560 LRR_1: Leucine Rich R 96.0 0.0025 5.5E-08 31.4 0.6 18 145-163 2-19 (22)
59 PRK15386 type III secretion pr 95.9 0.031 6.7E-07 48.7 6.9 30 168-201 157-187 (426)
60 KOG2982 Uncharacterized conser 95.4 0.0043 9.3E-08 51.4 0.2 75 104-179 81-158 (418)
61 PRK15386 type III secretion pr 95.0 0.063 1.4E-06 46.8 5.9 51 119-179 73-124 (426)
62 KOG2120 SCF ubiquitin ligase, 95.0 0.0022 4.7E-08 53.1 -2.8 57 141-200 311-372 (419)
63 COG5238 RNA1 Ran GTPase-activa 94.8 0.017 3.6E-07 47.4 1.8 110 78-205 30-171 (388)
64 KOG0473 Leucine-rich repeat pr 94.7 0.0005 1.1E-08 54.8 -6.8 63 114-179 61-123 (326)
65 PF13504 LRR_7: Leucine rich r 93.9 0.036 7.7E-07 25.4 1.2 13 119-131 2-14 (17)
66 KOG2123 Uncharacterized conser 93.7 0.0027 5.8E-08 52.1 -4.8 62 115-180 38-101 (388)
67 KOG2123 Uncharacterized conser 93.4 0.0042 9E-08 51.0 -4.1 58 114-173 59-123 (388)
68 KOG2120 SCF ubiquitin ligase, 93.2 0.0019 4E-08 53.5 -6.5 90 118-207 185-276 (419)
69 KOG0473 Leucine-rich repeat pr 93.0 0.0026 5.5E-08 50.9 -5.8 87 113-204 37-124 (326)
70 PF13306 LRR_5: Leucine rich r 92.6 0.55 1.2E-05 33.3 6.4 88 105-200 22-112 (129)
71 COG5238 RNA1 Ran GTPase-activa 92.3 0.17 3.7E-06 41.7 3.6 66 113-180 87-170 (388)
72 smart00370 LRR Leucine-rich re 92.2 0.13 2.7E-06 26.1 1.9 14 118-131 2-15 (26)
73 smart00369 LRR_TYP Leucine-ric 92.2 0.13 2.7E-06 26.1 1.9 14 118-131 2-15 (26)
74 PF13306 LRR_5: Leucine rich r 91.1 0.66 1.4E-05 32.9 5.5 84 113-201 7-91 (129)
75 PF13516 LRR_6: Leucine Rich r 83.5 0.5 1.1E-05 23.3 0.6 16 191-206 2-17 (24)
76 smart00365 LRR_SD22 Leucine-ri 82.1 1.3 2.7E-05 22.7 1.8 14 191-204 2-15 (26)
77 KOG3864 Uncharacterized conser 78.1 0.15 3.2E-06 40.0 -3.6 32 167-198 151-183 (221)
78 smart00364 LRR_BAC Leucine-ric 78.1 1.6 3.4E-05 22.4 1.3 13 119-131 3-15 (26)
79 smart00368 LRR_RI Leucine rich 77.7 2 4.3E-05 22.1 1.7 14 191-204 2-15 (28)
80 KOG1947 Leucine rich repeat pr 68.7 2.5 5.4E-05 37.0 1.2 90 114-204 210-308 (482)
81 KOG3864 Uncharacterized conser 61.6 1.2 2.7E-05 35.0 -1.8 72 105-176 112-185 (221)
82 KOG3763 mRNA export factor TAP 38.5 15 0.00033 33.3 1.0 65 116-180 216-283 (585)
83 KOG3763 mRNA export factor TAP 35.2 19 0.00042 32.7 1.1 65 141-206 216-285 (585)
84 KOG4308 LRR-containing protein 33.7 1.8 3.9E-05 38.8 -5.6 38 167-204 262-303 (478)
85 smart00367 LRR_CC Leucine-rich 33.3 30 0.00066 17.0 1.3 13 190-202 1-13 (26)
86 TIGR00864 PCC polycystin catio 32.3 31 0.00067 37.4 2.2 31 124-156 1-32 (2740)
87 TIGR00864 PCC polycystin catio 25.5 51 0.0011 35.9 2.3 28 104-131 5-32 (2740)
88 TIGR03042 PS_II_psbQ_bact phot 20.6 3.2E+02 0.0069 20.3 5.1 17 33-49 29-45 (142)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=6.9e-23 Score=194.60 Aligned_cols=176 Identities=32% Similarity=0.575 Sum_probs=139.2
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCCCCCCCCCcccccceEEcCCCCcEEEEEcCCCC--CCC-----CCCccccCC-CCCCC
Q 027602 35 LESEREVLLRFKQDLQDPSNRLASWIGDGDCCLWAGVICDNVTGHILELNLRNPF--NYY-----VQPDQFEAN-PRSML 106 (221)
Q Consensus 35 ~~~~~~~L~~~~~~l~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~--~~l-----~~~~~~~~~-~~n~l 106 (221)
.++|+.+|++||+.+.+|...+.+|+...+||.|.||+|++ .++|+.|++++.. +.+ ....+..+. +.|.+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~ 105 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL 105 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence 35889999999999988877789998878999999999986 5799999999853 100 011111111 34677
Q ss_pred ccccCcccc-CCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC
Q 027602 107 VGKVNPSLL-DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG 185 (221)
Q Consensus 107 ~g~~p~~l~-~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p 185 (221)
.|.+|..+. ++++|++|++++|.++| .+|. +.+++|++|++++|.+++.+|..++++++|++|++++|.+. +.+|
T Consensus 106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~-~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p 181 (968)
T PLN00113 106 SGPIPDDIFTTSSSLRYLNLSNNNFTG-SIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV-GKIP 181 (968)
T ss_pred CCcCChHHhccCCCCCEEECcCCcccc-ccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc-ccCC
Confidence 778887655 78888888888888887 6765 45788888888888888888888999999999999999987 5666
Q ss_pred -cCCCCCCCCEEEcccCCCCCCCCccccccc
Q 027602 186 -WLSGLSFLEHLDFSTTRKMGFTDTKLVSVI 215 (221)
Q Consensus 186 -~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~ 215 (221)
.+.++++|++|++++|.++|.+|..+..+.
T Consensus 182 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 212 (968)
T PLN00113 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMK 212 (968)
T ss_pred hhhhhCcCCCeeeccCCCCcCcCChHHcCcC
Confidence 788899999999999999999997765544
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.80 E-value=6.3e-19 Score=160.00 Aligned_cols=156 Identities=32% Similarity=0.448 Sum_probs=132.9
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCcc-----cccceEEcCC--C--CcEEEEEcCCCCCCCCCCccccCC
Q 027602 31 HVGCLESEREVLLRFKQDLQDPSNRLASWIGDGDCC-----LWAGVICDNV--T--GHILELNLRNPFNYYVQPDQFEAN 101 (221)
Q Consensus 31 ~~~~~~~~~~~L~~~~~~l~~~~~~l~~W~~~~~~c-----~w~gv~c~~~--~--~~v~~l~l~~~~~~l~~~~~~~~~ 101 (221)
...+.++|.++|..+|..+.++.. .+|.+ ++| .|.||.|... . .+|+.|+|++
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~~--~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~-------------- 427 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPLR--FGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN-------------- 427 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCccc--CCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCC--------------
Confidence 345667899999999999875532 48975 345 7999999531 1 2589999998
Q ss_pred CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602 102 PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV 181 (221)
Q Consensus 102 ~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~ 181 (221)
|.+.|.+|+.+..+++|+.|+|++|.++| .+|..++.+++|+.|++++|+++|.+|+.++++++|++|++++|+++
T Consensus 428 --n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~- 503 (623)
T PLN03150 428 --QGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS- 503 (623)
T ss_pred --CCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc-
Confidence 59999999999999999999999999999 99999999999999999999999999999999999999999999998
Q ss_pred cCCC-cCCC-CCCCCEEEcccCCCCCCCC
Q 027602 182 VNFG-WLSG-LSFLEHLDFSTTRKMGFTD 208 (221)
Q Consensus 182 ~~~p-~~~~-l~~L~~L~l~~N~l~g~ip 208 (221)
+.+| .+.. ..++..+++.+|...+.+|
T Consensus 504 g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 504 GRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ccCChHHhhccccCceEEecCCccccCCC
Confidence 7888 5554 3577899999998666555
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.52 E-value=2.5e-14 Score=136.30 Aligned_cols=107 Identities=30% Similarity=0.454 Sum_probs=62.7
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+.+.+|..+.++++|++|++++|.+.+ .+|..++++++|++|++++|.+++.+|..++++++|++|++++|.++ +.
T Consensus 150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~ 227 (968)
T PLN00113 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVG-KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS-GE 227 (968)
T ss_pred CcccccCChHHhcCCCCCEEECccCcccc-cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC-Cc
Confidence 55555666666666666666666666665 55665666666666666666665555655555666666666665554 34
Q ss_pred CC-cCCCCCCCCEEEcccCCCCCCCCcccc
Q 027602 184 FG-WLSGLSFLEHLDFSTTRKMGFTDTKLV 212 (221)
Q Consensus 184 ~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~ 212 (221)
+| .+.++++|++|++++|.++|.+|..+.
T Consensus 228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 257 (968)
T PLN00113 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257 (968)
T ss_pred CChhHhcCCCCCEEECcCceeccccChhHh
Confidence 44 455555555555555555555554443
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.38 E-value=7.6e-13 Score=120.49 Aligned_cols=93 Identities=29% Similarity=0.374 Sum_probs=87.2
Q ss_pred CCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEE
Q 027602 119 HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLD 197 (221)
Q Consensus 119 ~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~ 197 (221)
.++.|+|++|.++| .+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|++++|+++ +.+| .+.++++|++|+
T Consensus 419 ~v~~L~L~~n~L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ls-g~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN-GSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccc-cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCC-CCCchHHhcCCCCCEEE
Confidence 37889999999999 99999999999999999999999999999999999999999999998 7777 788999999999
Q ss_pred cccCCCCCCCCccccc
Q 027602 198 FSTTRKMGFTDTKLVS 213 (221)
Q Consensus 198 l~~N~l~g~ip~~~~~ 213 (221)
+++|+++|.+|..+..
T Consensus 497 Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 497 LNGNSLSGRVPAALGG 512 (623)
T ss_pred CcCCcccccCChHHhh
Confidence 9999999999987654
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.26 E-value=1.4e-13 Score=103.68 Aligned_cols=107 Identities=25% Similarity=0.376 Sum_probs=73.7
Q ss_pred CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC
Q 027602 78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG 157 (221)
Q Consensus 78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g 157 (221)
..+|++.|+. |.++ .+|+.+..+.+|++|++.+|+++ .+|..+..+++|+.|+++-|++.
T Consensus 33 s~ITrLtLSH----------------NKl~-~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~- 92 (264)
T KOG0617|consen 33 SNITRLTLSH----------------NKLT-VVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLN- 92 (264)
T ss_pred hhhhhhhccc----------------Ccee-ecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhh-
Confidence 4577777777 4554 55666777777777777777777 67777777777777777777776
Q ss_pred CCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCC
Q 027602 158 VIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKM 204 (221)
Q Consensus 158 ~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~ 204 (221)
.+|..|+.++.|+.||+..|++....+| .|..+..|+.|++++|.|.
T Consensus 93 ~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe 140 (264)
T KOG0617|consen 93 ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE 140 (264)
T ss_pred cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc
Confidence 6777777777777777777776544445 4555555555555555554
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.01 E-value=9.2e-11 Score=98.73 Aligned_cols=98 Identities=28% Similarity=0.340 Sum_probs=75.9
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|++-..+|.+++.+..|+.|+++.|+|. .+|..+-.+..++.+-.++|++....|..++++.+|.+||+.+|.+. ..
T Consensus 444 NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr--~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~I 520 (565)
T KOG0472|consen 444 NNLLNDLPEEMGSLVRLQTLNLSFNRFR--MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QI 520 (565)
T ss_pred cchhhhcchhhhhhhhhheecccccccc--cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hC
Confidence 5666677777777777777777777776 56766655556666666667776444555899999999999999996 44
Q ss_pred CCcCCCCCCCCEEEcccCCCC
Q 027602 184 FGWLSGLSFLEHLDFSTTRKM 204 (221)
Q Consensus 184 ~p~~~~l~~L~~L~l~~N~l~ 204 (221)
+|.+++|.+|++|++.+|.|.
T Consensus 521 Pp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 521 PPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ChhhccccceeEEEecCCccC
Confidence 559999999999999999998
No 7
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=99.01 E-value=6e-10 Score=65.51 Aligned_cols=39 Identities=49% Similarity=1.003 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhCC-CCCCCCCCCCCC--CCcccccceEEc
Q 027602 36 ESEREVLLRFKQDLQ-DPSNRLASWIGD--GDCCLWAGVICD 74 (221)
Q Consensus 36 ~~~~~~L~~~~~~l~-~~~~~l~~W~~~--~~~c~w~gv~c~ 74 (221)
++|+++|++||+++. ++...+.+|+.+ .+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 689999999999998 566789999987 799999999995
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.97 E-value=2.5e-11 Score=102.14 Aligned_cols=103 Identities=28% Similarity=0.258 Sum_probs=87.1
Q ss_pred CCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccC-CCCCCCEEeCcCCCCCCcC
Q 027602 105 MLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLG-NLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 105 ~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~-~l~~L~~L~l~~N~l~~~~ 183 (221)
++-+.+|++++.+.+|+.|+++.|.+. .+| +|+.+..|.+++++.|.+. .+|.... +++++..||+..|+++ .
T Consensus 193 N~L~tlP~~lg~l~~L~~LyL~~Nki~--~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk--e 266 (565)
T KOG0472|consen 193 NLLETLPPELGGLESLELLYLRRNKIR--FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK--E 266 (565)
T ss_pred hhhhcCChhhcchhhhHHHHhhhcccc--cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc--c
Confidence 566889999999999999999999998 677 6888888999999998887 6787665 8899999999999995 6
Q ss_pred CC-cCCCCCCCCEEEcccCCCCCCCCcccccc
Q 027602 184 FG-WLSGLSFLEHLDFSTTRKMGFTDTKLVSV 214 (221)
Q Consensus 184 ~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~ 214 (221)
.| .+.-+++|+.||+++|.+++ +|.+++++
T Consensus 267 ~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl 297 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNNDISS-LPYSLGNL 297 (565)
T ss_pred CchHHHHhhhhhhhcccCCcccc-CCcccccc
Confidence 66 77788999999999999998 66666544
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.96 E-value=5.5e-11 Score=89.77 Aligned_cols=96 Identities=24% Similarity=0.343 Sum_probs=84.9
Q ss_pred ccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCC
Q 027602 114 LLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSF 192 (221)
Q Consensus 114 l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~ 192 (221)
+.++.+++.|.+++|.++ .+|+.+..+.+|+.|++.+|++. .+|.++..+++|++|+++.|++. .+| .|+.++.
T Consensus 29 Lf~~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~ 103 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPA 103 (264)
T ss_pred ccchhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh--cCccccCCCch
Confidence 456788899999999999 79999999999999999999998 79999999999999999999995 556 8999999
Q ss_pred CCEEEcccCCCCCC-CCcccccc
Q 027602 193 LEHLDFSTTRKMGF-TDTKLVSV 214 (221)
Q Consensus 193 L~~L~l~~N~l~g~-ip~~~~~~ 214 (221)
|++||+..|+++.. +|..+.-+
T Consensus 104 levldltynnl~e~~lpgnff~m 126 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYM 126 (264)
T ss_pred hhhhhccccccccccCCcchhHH
Confidence 99999999998765 67655443
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.90 E-value=7.7e-11 Score=103.25 Aligned_cols=104 Identities=25% Similarity=0.215 Sum_probs=75.9
Q ss_pred CCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCc
Q 027602 103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVV 182 (221)
Q Consensus 103 ~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~ 182 (221)
+|++...-...+.+++.|+.|++++|.+.. .-++.|...++|++|+|++|+++...+..+..+..|+.|.|++|++.
T Consensus 278 ~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r-ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-- 354 (873)
T KOG4194|consen 278 TNRLQAVNEGWLFGLTSLEQLDLSYNAIQR-IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-- 354 (873)
T ss_pred cchhhhhhcccccccchhhhhccchhhhhe-eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH--
Confidence 367766666677888888888888888886 56677888888888888888888666666777777777777777764
Q ss_pred CCC--cCCCCCCCCEEEcccCCCCCCCCc
Q 027602 183 NFG--WLSGLSFLEHLDFSTTRKMGFTDT 209 (221)
Q Consensus 183 ~~p--~~~~l~~L~~L~l~~N~l~g~ip~ 209 (221)
.+. .|..+++|+.|||..|.+++.|.+
T Consensus 355 ~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 355 HLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred HHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 333 455667777777777777766654
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.89 E-value=2.4e-08 Score=92.44 Aligned_cols=41 Identities=12% Similarity=0.069 Sum_probs=31.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCCCCCC----CCCCCCcccccc
Q 027602 29 SYHVGCLESEREVLLRFKQDLQDPSNRLAS----WIGDGDCCLWAG 70 (221)
Q Consensus 29 ~~~~~~~~~~~~~L~~~~~~l~~~~~~l~~----W~~~~~~c~w~g 70 (221)
.+..+..++|...+.++.+.+..|. +..+ |.+.+++|.-..
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~l~~p~-~~~~~~~~~~~~~~fc~~~~ 99 (754)
T PRK15370 55 HPPETASPEEIKSKFECLRMLAFPA-YADNIQYSRGGADQYCILSE 99 (754)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCc-hhhccccccCCCCcccccCC
Confidence 4567788999999999999998774 3444 998889996543
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=1.4e-09 Score=83.45 Aligned_cols=90 Identities=28% Similarity=0.259 Sum_probs=42.7
Q ss_pred ccc-CCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCcccc-CCCCCCCEEeCcCCCCCC-cCCCcCCC
Q 027602 113 SLL-DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQL-GNLSSLRYLDLSRNFLYV-VNFGWLSG 189 (221)
Q Consensus 113 ~l~-~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l-~~l~~L~~L~l~~N~l~~-~~~p~~~~ 189 (221)
.++ .+.+|+.|++++|.++ .++ .+..+++|++|++++|+++ .+.+.+ ..+++|+.|++++|++.. ..+..+..
T Consensus 36 ~L~~~l~~L~~L~Ls~N~I~--~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~ 111 (175)
T PF14580_consen 36 NLGATLDKLEVLDLSNNQIT--KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSS 111 (175)
T ss_dssp S--TT-TT--EEE-TTS--S----T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG
T ss_pred chhhhhcCCCEEECCCCCCc--ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHc
Confidence 344 5789999999999999 564 4778999999999999998 454444 468999999999999853 22336677
Q ss_pred CCCCCEEEcccCCCCCC
Q 027602 190 LSFLEHLDFSTTRKMGF 206 (221)
Q Consensus 190 l~~L~~L~l~~N~l~g~ 206 (221)
+++|++|++.+|.++..
T Consensus 112 l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 112 LPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp -TT--EEE-TT-GGGGS
T ss_pred CCCcceeeccCCcccch
Confidence 99999999999998754
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.88 E-value=2e-09 Score=94.53 Aligned_cols=99 Identities=25% Similarity=0.337 Sum_probs=55.9
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+...-+..|.++++|+.+++..|.++ .||.......+|+.|+|.+|.++..-.+++..++.|+.|||+.|.++...
T Consensus 88 Nkl~~id~~~f~nl~nLq~v~l~~N~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~ 165 (873)
T KOG4194|consen 88 NKLSHIDFEFFYNLPNLQEVNLNKNELT--RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIP 165 (873)
T ss_pred cccccCcHHHHhcCCcceeeeeccchhh--hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhccc
Confidence 5666555666677777777777777777 56665555556666666666665443444445555555555555554222
Q ss_pred CCcCCCCCCCCEEEcccCCCC
Q 027602 184 FGWLSGLSFLEHLDFSTTRKM 204 (221)
Q Consensus 184 ~p~~~~l~~L~~L~l~~N~l~ 204 (221)
.|.+..-.++++|+|++|.|+
T Consensus 166 ~~sfp~~~ni~~L~La~N~It 186 (873)
T KOG4194|consen 166 KPSFPAKVNIKKLNLASNRIT 186 (873)
T ss_pred CCCCCCCCCceEEeecccccc
Confidence 224443344444444444443
No 14
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=1.1e-09 Score=69.49 Aligned_cols=58 Identities=38% Similarity=0.578 Sum_probs=28.7
Q ss_pred CCcEEeCccCCCCCCccc-ccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCC
Q 027602 119 HLSYLDLSFNDFQGVQIP-RFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNF 178 (221)
Q Consensus 119 ~L~~L~L~~n~l~g~~ip-~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~ 178 (221)
+|++|++++|+++ .+| ..|..+++|++|++++|.++...|..+.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~--~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLT--EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTES--EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCC--ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4455555555555 233 234455555555555555543333444555555555555554
No 15
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=2.3e-09 Score=67.92 Aligned_cols=60 Identities=32% Similarity=0.329 Sum_probs=52.0
Q ss_pred CCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCC
Q 027602 143 GNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRK 203 (221)
Q Consensus 143 ~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l 203 (221)
++|++|++++|+++...+..+.++++|++|++++|.++ ...+ .|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence 57899999999999555568899999999999999996 3334 788999999999999985
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.75 E-value=9e-10 Score=100.80 Aligned_cols=99 Identities=28% Similarity=0.431 Sum_probs=78.4
Q ss_pred CCCCccccCccccCCCCCcEEeCccCCCCCCccccc-ccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602 103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRF-IGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV 181 (221)
Q Consensus 103 ~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~-~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~ 181 (221)
.|.++...-+.+.++++|++|+|++|++. .+|.. +.++..|+.|+|++|+++ .+|..+.++..|++|...+|.+.
T Consensus 368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~--~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~- 443 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLVNFKHLKVLHLSYNRLN--SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL- 443 (1081)
T ss_pred cCcccccchhhhccccceeeeeecccccc--cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-
Confidence 36777777777889999999999999998 67754 678999999999999998 67777777777777777777773
Q ss_pred cCCCcCCCCCCCCEEEcccCCCCCC
Q 027602 182 VNFGWLSGLSFLEHLDFSTTRKMGF 206 (221)
Q Consensus 182 ~~~p~~~~l~~L~~L~l~~N~l~g~ 206 (221)
.+|++..++.|+.+|++.|+++--
T Consensus 444 -~fPe~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 444 -SFPELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred -echhhhhcCcceEEecccchhhhh
Confidence 566777777777777777776543
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.74 E-value=9.7e-10 Score=97.41 Aligned_cols=97 Identities=31% Similarity=0.389 Sum_probs=74.1
Q ss_pred CCCc-cccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCcccc-CCCCCCCEEeCcCCCCCC
Q 027602 104 SMLV-GKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQL-GNLSSLRYLDLSRNFLYV 181 (221)
Q Consensus 104 n~l~-g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l-~~l~~L~~L~l~~N~l~~ 181 (221)
|++. ..+|+++..+..|++|||++|++. .+|..+..-+++..|+|++|++. .||..+ .+++.|-+|||++|++.
T Consensus 88 N~LKnsGiP~diF~l~dLt~lDLShNqL~--EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe- 163 (1255)
T KOG0444|consen 88 NNLKNSGIPTDIFRLKDLTILDLSHNQLR--EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE- 163 (1255)
T ss_pred cccccCCCCchhcccccceeeecchhhhh--hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-
Confidence 4554 467888888888999999999888 78888888888888888888886 566543 57788888888888874
Q ss_pred cCCCcCCCCCCCCEEEcccCCCC
Q 027602 182 VNFGWLSGLSFLEHLDFSTTRKM 204 (221)
Q Consensus 182 ~~~p~~~~l~~L~~L~l~~N~l~ 204 (221)
..+|.+.++..|++|.|++|.+.
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCCChhh
Confidence 33446667777888888887653
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.72 E-value=1.2e-09 Score=96.89 Aligned_cols=107 Identities=16% Similarity=0.231 Sum_probs=57.1
Q ss_pred CcEEEEEcCCCCCCCCCCccccCCCCCCCc-cccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCC
Q 027602 78 GHILELNLRNPFNYYVQPDQFEANPRSMLV-GKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG 156 (221)
Q Consensus 78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~-g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~ 156 (221)
.-|..+++++ |.++ +.+|....+++++++|.|....+. .+|.+++.+.+|++|.+++|++.
T Consensus 7 pFVrGvDfsg----------------NDFsg~~FP~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~ 68 (1255)
T KOG0444|consen 7 PFVRGVDFSG----------------NDFSGDRFPHDVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLI 68 (1255)
T ss_pred ceeecccccC----------------CcCCCCcCchhHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhH
Confidence 3467778877 4555 456666666666666666666666 56666666666666666666554
Q ss_pred CCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCC
Q 027602 157 GVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRK 203 (221)
Q Consensus 157 g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l 203 (221)
. +-..+..++.|+.+++..|++....+| .+.++..|++|||++|++
T Consensus 69 ~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL 115 (1255)
T KOG0444|consen 69 S-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL 115 (1255)
T ss_pred h-hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhh
Confidence 2 222333444444444444444332233 344444444444444444
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.64 E-value=3.7e-08 Score=91.19 Aligned_cols=86 Identities=23% Similarity=0.164 Sum_probs=55.7
Q ss_pred CCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEE
Q 027602 119 HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLD 197 (221)
Q Consensus 119 ~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~ 197 (221)
+|+.|++++|.++ .+|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|.++ .+| .+..+++|+.|+
T Consensus 383 ~L~~LdLs~N~Lt--~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt--~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 383 GLKELIVSGNRLT--SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT--RLPESLIHLSSETTVN 451 (788)
T ss_pred ccceEEecCCccc--CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc--ccChHHhhccCCCeEE
Confidence 3455555555555 23432 235566666666665 34532 235667777777774 566 677899999999
Q ss_pred cccCCCCCCCCccccccc
Q 027602 198 FSTTRKMGFTDTKLVSVI 215 (221)
Q Consensus 198 l~~N~l~g~ip~~~~~~~ 215 (221)
+++|+|+|.+|..+..+.
T Consensus 452 Ls~N~Ls~~~~~~L~~l~ 469 (788)
T PRK15387 452 LEGNPLSERTLQALREIT 469 (788)
T ss_pred CCCCCCCchHHHHHHHHh
Confidence 999999999887664433
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.62 E-value=5.9e-09 Score=95.61 Aligned_cols=104 Identities=30% Similarity=0.332 Sum_probs=88.3
Q ss_pred CcEEEEEcCCCCCCCCCCccccCCCCCCCccccC-ccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCC
Q 027602 78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVN-PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG 156 (221)
Q Consensus 78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p-~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~ 156 (221)
.+++-|+|++ |.+. .+| ..+.++..|+.|+|++|.++ .+|..+..+..|++|...+|++.
T Consensus 383 ~hLKVLhLsy----------------NrL~-~fpas~~~kle~LeeL~LSGNkL~--~Lp~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 383 KHLKVLHLSY----------------NRLN-SFPASKLRKLEELEELNLSGNKLT--TLPDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred cceeeeeecc----------------cccc-cCCHHHHhchHHhHHHhcccchhh--hhhHHHHhhhhhHHHhhcCCcee
Confidence 3567777777 5665 455 46789999999999999999 89999999999999999999997
Q ss_pred CCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCC
Q 027602 157 GVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTR 202 (221)
Q Consensus 157 g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~ 202 (221)
.+| .+..++.|+.+|++.|.++...+|....-++|++||+++|.
T Consensus 444 -~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 444 -SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred -ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 678 78999999999999999987777744444899999999997
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.51 E-value=5.9e-07 Score=87.56 Aligned_cols=99 Identities=21% Similarity=0.134 Sum_probs=71.8
Q ss_pred ccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCC
Q 027602 109 KVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLS 188 (221)
Q Consensus 109 ~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~ 188 (221)
.++..+..+++|+.|+++++.... .+|. +..+++|++|++++|.....+|..++.+++|++|++++|... ..+|...
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L-~~Lp~~i 701 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLK-EIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL-EILPTGI 701 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcC-cCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc-CccCCcC
Confidence 456667778888888888765444 6664 677888888888887666678888888888888888876543 5666434
Q ss_pred CCCCCCEEEcccCCCCCCCCcc
Q 027602 189 GLSFLEHLDFSTTRKMGFTDTK 210 (221)
Q Consensus 189 ~l~~L~~L~l~~N~l~g~ip~~ 210 (221)
++++|++|++++|...+.+|..
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~~ 723 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPDI 723 (1153)
T ss_pred CCCCCCEEeCCCCCCccccccc
Confidence 6778888888877666666544
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.48 E-value=8.8e-09 Score=86.71 Aligned_cols=99 Identities=23% Similarity=0.243 Sum_probs=65.6
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccC-CcCCCCCccccCCCCCCCEEeCcCCCCCCc
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLG-SQFGGVIPHQLGNLSSLRYLDLSRNFLYVV 182 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~-N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~ 182 (221)
|+++-..|..|..+++|+.|||++|.++. .-|..|..+++|..|.+.+ |+++...-..|+++.+++.|.+.-|++...
T Consensus 77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~-I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci 155 (498)
T KOG4237|consen 77 NQISSIPPGAFKTLHRLRRLDLSKNNISF-IAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI 155 (498)
T ss_pred CCcccCChhhccchhhhceecccccchhh-cChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence 68887777789999999999999999997 6788899999888877766 888743334456666555555555554311
Q ss_pred CCCcCCCCCCCCEEEcccCCC
Q 027602 183 NFGWLSGLSFLEHLDFSTTRK 203 (221)
Q Consensus 183 ~~p~~~~l~~L~~L~l~~N~l 203 (221)
....+..+++|..|.+.+|.+
T Consensus 156 r~~al~dL~~l~lLslyDn~~ 176 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLSLYDNKI 176 (498)
T ss_pred hHHHHHHhhhcchhcccchhh
Confidence 111344444444444444443
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.44 E-value=7.7e-08 Score=73.88 Aligned_cols=86 Identities=26% Similarity=0.311 Sum_probs=29.0
Q ss_pred ccCCCCCcEEeCccCCCCCCccccccc-CCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cC-CCC
Q 027602 114 LLDLEHLSYLDLSFNDFQGVQIPRFIG-SMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WL-SGL 190 (221)
Q Consensus 114 l~~l~~L~~L~L~~n~l~g~~ip~~~~-~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~-~~l 190 (221)
+.+...+++|+|++|.++ .|. .++ .+.+|+.|++++|.++ .+ +.+..+++|+.|++++|+++ .+. .+ ..+
T Consensus 15 ~~n~~~~~~L~L~~n~I~--~Ie-~L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~--~i~~~l~~~l 87 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS--TIE-NLGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRIS--SISEGLDKNL 87 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS-----S-CHHHHHH-
T ss_pred cccccccccccccccccc--ccc-chhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCC--ccccchHHhC
Confidence 455667899999999998 553 455 5889999999999998 34 35778999999999999996 454 34 358
Q ss_pred CCCCEEEcccCCCCCC
Q 027602 191 SFLEHLDFSTTRKMGF 206 (221)
Q Consensus 191 ~~L~~L~l~~N~l~g~ 206 (221)
++|++|++++|+|..-
T Consensus 88 p~L~~L~L~~N~I~~l 103 (175)
T PF14580_consen 88 PNLQELYLSNNKISDL 103 (175)
T ss_dssp TT--EEE-TTS---SC
T ss_pred CcCCEEECcCCcCCCh
Confidence 9999999999999763
No 24
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.44 E-value=9.9e-07 Score=86.04 Aligned_cols=101 Identities=19% Similarity=0.240 Sum_probs=65.4
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|...+.+|..+.++++|+.|++++|..-+ .+|..+ .+++|++|++++|.....+|.. .++|+.|++++|.++ .
T Consensus 788 n~~l~~lP~si~~L~~L~~L~Ls~C~~L~-~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~--~ 860 (1153)
T PLN03210 788 IPSLVELPSSIQNLHKLEHLEIENCINLE-TLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE--E 860 (1153)
T ss_pred CCCccccChhhhCCCCCCEEECCCCCCcC-eeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc--c
Confidence 45666788888888999999998865444 677665 5777777777776544444432 246667777777764 4
Q ss_pred CC-cCCCCCCCCEEEcccCCCCCCCCccc
Q 027602 184 FG-WLSGLSFLEHLDFSTTRKMGFTDTKL 211 (221)
Q Consensus 184 ~p-~~~~l~~L~~L~l~~N~l~g~ip~~~ 211 (221)
+| .+..+++|++|++++|+--..+|...
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~ 889 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNI 889 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcCccCccc
Confidence 55 56667777777776633333355443
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.41 E-value=1.1e-07 Score=79.45 Aligned_cols=88 Identities=25% Similarity=0.284 Sum_probs=37.5
Q ss_pred CCCcEEeCccCCCCCC---cccccccCCCCCcEEEccCCcCCCC----CccccCCCCCCCEEeCcCCCCCCcC---CC-c
Q 027602 118 EHLSYLDLSFNDFQGV---QIPRFIGSMGNQKYLNLLGSQFGGV----IPHQLGNLSSLRYLDLSRNFLYVVN---FG-W 186 (221)
Q Consensus 118 ~~L~~L~L~~n~l~g~---~ip~~~~~l~~L~~L~l~~N~l~g~----~p~~l~~l~~L~~L~l~~N~l~~~~---~p-~ 186 (221)
++|+.|++++|.+++. .++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.... +. .
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 4555555555555530 1122233344555555555555421 1222333345555555555443111 11 2
Q ss_pred CCCCCCCCEEEcccCCCCC
Q 027602 187 LSGLSFLEHLDFSTTRKMG 205 (221)
Q Consensus 187 ~~~l~~L~~L~l~~N~l~g 205 (221)
+..+++|++|++++|.+++
T Consensus 217 ~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred hcccCCCCEEecCCCcCch
Confidence 2334445555555555443
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.40 E-value=8.7e-08 Score=79.99 Aligned_cols=113 Identities=20% Similarity=0.149 Sum_probs=82.9
Q ss_pred CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCC---CcEEeCccCCCCCC---cccccccCC-CCCcEEEc
Q 027602 78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEH---LSYLDLSFNDFQGV---QIPRFIGSM-GNQKYLNL 150 (221)
Q Consensus 78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~---L~~L~L~~n~l~g~---~ip~~~~~l-~~L~~L~l 150 (221)
..++.+++++ |.+.+..+..+..+.+ |+.|++++|++++. .+...+..+ ++|+.|++
T Consensus 81 ~~L~~L~l~~----------------~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L 144 (319)
T cd00116 81 CGLQELDLSD----------------NALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144 (319)
T ss_pred CceeEEEccC----------------CCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEc
Confidence 4788888887 4676555555555555 99999999999831 223345566 89999999
Q ss_pred cCCcCCCC----CccccCCCCCCCEEeCcCCCCCCcCCC----cCCCCCCCCEEEcccCCCCCC
Q 027602 151 LGSQFGGV----IPHQLGNLSSLRYLDLSRNFLYVVNFG----WLSGLSFLEHLDFSTTRKMGF 206 (221)
Q Consensus 151 ~~N~l~g~----~p~~l~~l~~L~~L~l~~N~l~~~~~p----~~~~l~~L~~L~l~~N~l~g~ 206 (221)
++|.+++. ++..+..+++|++|++++|.+++..++ .+...++|++|++++|.+++.
T Consensus 145 ~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 208 (319)
T cd00116 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE 208 (319)
T ss_pred CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence 99999853 334556778899999999998633222 344567999999999998754
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.37 E-value=2e-06 Score=79.91 Aligned_cols=44 Identities=16% Similarity=0.186 Sum_probs=26.0
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG 156 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~ 156 (221)
|+++. +|. .+++|++|++++|+++ .+|.. .++|+.|++++|.++
T Consensus 232 N~Lt~-LP~---lp~~Lk~LdLs~N~Lt--sLP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 232 NNLTS-LPA---LPPELRTLEVSGNQLT--SLPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred CcCCC-CCC---CCCCCcEEEecCCccC--cccCc---ccccceeeccCCchh
Confidence 55553 553 2467888888888888 45643 234555555555443
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.37 E-value=5e-08 Score=79.87 Aligned_cols=97 Identities=25% Similarity=0.297 Sum_probs=60.8
Q ss_pred ccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCC---------------------CccccCCCC
Q 027602 109 KVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGV---------------------IPHQLGNLS 167 (221)
Q Consensus 109 ~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~---------------------~p~~l~~l~ 167 (221)
.+.+++.-++.++.|++++|.+. .+.. +..+++|+.|+|++|.++.. --..++++.
T Consensus 298 ~iDESvKL~Pkir~L~lS~N~i~--~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLY 374 (490)
T KOG1259|consen 298 QIDESVKLAPKLRRLILSQNRIR--TVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLY 374 (490)
T ss_pred hhhhhhhhccceeEEecccccee--eehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhh
Confidence 44555555566666666666665 3322 55566666666666655421 112345567
Q ss_pred CCCEEeCcCCCCCCc-CCCcCCCCCCCCEEEcccCCCCCCCC
Q 027602 168 SLRYLDLSRNFLYVV-NFGWLSGLSFLEHLDFSTTRKMGFTD 208 (221)
Q Consensus 168 ~L~~L~l~~N~l~~~-~~p~~~~l~~L~~L~l~~N~l~g~ip 208 (221)
+|..||+++|++... ....+++++.|+++.+-+|.+.+.+.
T Consensus 375 SLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 375 SLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 788888888887421 12367888888888888888888653
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.35 E-value=1.3e-07 Score=79.85 Aligned_cols=95 Identities=19% Similarity=0.094 Sum_probs=80.6
Q ss_pred cccC-ccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-
Q 027602 108 GKVN-PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG- 185 (221)
Q Consensus 108 g~~p-~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p- 185 (221)
+..| ..|..+++|++|++++|.+++ .-+..|..+.++++|+|..|++...--.-|.++..|++|+|++|+++ ..-|
T Consensus 263 ~~cP~~cf~~L~~L~~lnlsnN~i~~-i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~ 340 (498)
T KOG4237|consen 263 SICPAKCFKKLPNLRKLNLSNNKITR-IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPG 340 (498)
T ss_pred CcChHHHHhhcccceEeccCCCccch-hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE-EEecc
Confidence 3344 358899999999999999997 66788999999999999999997544556789999999999999997 4445
Q ss_pred cCCCCCCCCEEEcccCCCC
Q 027602 186 WLSGLSFLEHLDFSTTRKM 204 (221)
Q Consensus 186 ~~~~l~~L~~L~l~~N~l~ 204 (221)
.|..+.+|.+|++-.|.|.
T Consensus 341 aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cccccceeeeeehccCccc
Confidence 7888999999999999874
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.31 E-value=7.5e-08 Score=84.52 Aligned_cols=96 Identities=22% Similarity=0.256 Sum_probs=81.1
Q ss_pred CCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCC
Q 027602 105 MLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNF 184 (221)
Q Consensus 105 ~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~ 184 (221)
+=.+.+|++++.+.+|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+++..|+ |..||++.|+++ .+
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~--slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis--~i 226 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQ--SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS--YL 226 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhh--hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee--ec
Confidence 334577888888888888899999888 78888888899999999999887 6788888665 899999999995 77
Q ss_pred C-cCCCCCCCCEEEcccCCCCCC
Q 027602 185 G-WLSGLSFLEHLDFSTTRKMGF 206 (221)
Q Consensus 185 p-~~~~l~~L~~L~l~~N~l~g~ 206 (221)
| .|.+|+.|++|-|.+|.+..+
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred chhhhhhhhheeeeeccCCCCCC
Confidence 8 888899999999999999865
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.28 E-value=1.4e-06 Score=81.04 Aligned_cols=55 Identities=24% Similarity=0.469 Sum_probs=26.4
Q ss_pred CCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCC
Q 027602 119 HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLY 180 (221)
Q Consensus 119 ~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~ 180 (221)
+|+.|++++|.+. .+|..+. .+|++|++++|+++ .+|..+. ++|++|++++|+++
T Consensus 242 ~L~~L~Ls~N~L~--~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 242 TIQEMELSINRIT--ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred cccEEECcCCccC--cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence 4455555555554 3444332 34555555555554 3444332 24555555555553
No 32
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.27 E-value=5.7e-08 Score=70.93 Aligned_cols=116 Identities=18% Similarity=0.183 Sum_probs=90.7
Q ss_pred CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCcccc-CCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCC
Q 027602 78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLL-DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG 156 (221)
Q Consensus 78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~-~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~ 156 (221)
-+++.++|++ |.+. .+|+.|. .++.++.|++++|.++ .+|.++..++.|+.|+++.|.+.
T Consensus 53 ~el~~i~ls~----------------N~fk-~fp~kft~kf~t~t~lNl~~neis--dvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 53 YELTKISLSD----------------NGFK-KFPKKFTIKFPTATTLNLANNEIS--DVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred ceEEEEeccc----------------chhh-hCCHHHhhccchhhhhhcchhhhh--hchHHHhhhHHhhhcccccCccc
Confidence 4688899998 4554 5565554 4568999999999999 79999999999999999999998
Q ss_pred CCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCccccccc
Q 027602 157 GVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVSVI 215 (221)
Q Consensus 157 g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~ 215 (221)
..|+.+..+.++.+|+..+|.. ..+| .+..-+..-..+++++.+.+.-|....+++
T Consensus 114 -~~p~vi~~L~~l~~Lds~~na~--~eid~dl~~s~~~al~~lgnepl~~~~~~klqa~k 170 (177)
T KOG4579|consen 114 -AEPRVIAPLIKLDMLDSPENAR--AEIDVDLFYSSLPALIKLGNEPLGDETKKKLQALK 170 (177)
T ss_pred -cchHHHHHHHhHHHhcCCCCcc--ccCcHHHhccccHHHHHhcCCcccccCcccccccC
Confidence 6788888899999999999987 5676 433223334456688888888887766665
No 33
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.25 E-value=1.3e-06 Score=51.48 Aligned_cols=36 Identities=31% Similarity=0.424 Sum_probs=19.6
Q ss_pred CCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCC
Q 027602 119 HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG 156 (221)
Q Consensus 119 ~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~ 156 (221)
+|++|++++|+++ .+|+.+.++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCC
Confidence 4555666666665 45555555566666666655554
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.24 E-value=2e-07 Score=76.46 Aligned_cols=91 Identities=26% Similarity=0.291 Sum_probs=67.2
Q ss_pred ccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-
Q 027602 107 VGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG- 185 (221)
Q Consensus 107 ~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p- 185 (221)
+|..-.++.....|+++||++|.++ .+..+..-+|+++.|++++|.+. .+ ..+..+++|+.||+++|.++ .+.
T Consensus 273 ~G~~~~~~dTWq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls--~~~G 346 (490)
T KOG1259|consen 273 NGSALVSADTWQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA--ECVG 346 (490)
T ss_pred CCceEEecchHhhhhhccccccchh--hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH--hhhh
Confidence 3444445555678999999999999 78888888999999999999987 33 45888999999999999875 222
Q ss_pred cCCCCCCCCEEEcccCCC
Q 027602 186 WLSGLSFLEHLDFSTTRK 203 (221)
Q Consensus 186 ~~~~l~~L~~L~l~~N~l 203 (221)
+-..+.+++.|.+++|.+
T Consensus 347 wh~KLGNIKtL~La~N~i 364 (490)
T KOG1259|consen 347 WHLKLGNIKTLKLAQNKI 364 (490)
T ss_pred hHhhhcCEeeeehhhhhH
Confidence 333344555555555543
No 35
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.17 E-value=2.2e-06 Score=50.40 Aligned_cols=37 Identities=35% Similarity=0.445 Sum_probs=22.6
Q ss_pred CCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCC
Q 027602 143 GNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLY 180 (221)
Q Consensus 143 ~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~ 180 (221)
++|++|++++|+++ .+|+.++++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35666666666666 45555666666666666666664
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.04 E-value=2.1e-06 Score=81.03 Aligned_cols=87 Identities=30% Similarity=0.370 Sum_probs=74.2
Q ss_pred cccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCC
Q 027602 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLS 191 (221)
Q Consensus 113 ~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~ 191 (221)
.|..++.|++|||++|.--+ .+|..++.+-+|++|++++..+. .+|..++++..|.+|++..+... ..+| ....+.
T Consensus 566 ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l-~~~~~i~~~L~ 642 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRL-ESIPGILLELQ 642 (889)
T ss_pred HHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccc-ccccchhhhcc
Confidence 47789999999999877666 89999999999999999999998 89999999999999999988754 4456 444599
Q ss_pred CCCEEEcccCC
Q 027602 192 FLEHLDFSTTR 202 (221)
Q Consensus 192 ~L~~L~l~~N~ 202 (221)
+|++|.+..-.
T Consensus 643 ~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 643 SLRVLRLPRSA 653 (889)
T ss_pred cccEEEeeccc
Confidence 99999987654
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.97 E-value=3.7e-07 Score=80.30 Aligned_cols=100 Identities=26% Similarity=0.379 Sum_probs=57.3
Q ss_pred ccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC-------
Q 027602 109 KVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV------- 181 (221)
Q Consensus 109 ~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~------- 181 (221)
.+|+.+.++..|+.||++.|+++ .+|..++.++ |+.|-+++|+++ .+|+.++.+..|..||.+.|.+..
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS--~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~ 187 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLS--HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGY 187 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhh--cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhh
Confidence 45566666666666666666666 5566666554 566666666654 455555555555555555554420
Q ss_pred --------------cCCC-cCCCCCCCCEEEcccCCCCCCCCcccccc
Q 027602 182 --------------VNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVSV 214 (221)
Q Consensus 182 --------------~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~ 214 (221)
..+| ++..+ .|..||++.|+++- ||..+..+
T Consensus 188 l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~-iPv~fr~m 233 (722)
T KOG0532|consen 188 LTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISY-LPVDFRKM 233 (722)
T ss_pred HHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceee-cchhhhhh
Confidence 1233 44422 36667777777763 66665444
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.94 E-value=3.6e-07 Score=82.48 Aligned_cols=90 Identities=26% Similarity=0.272 Sum_probs=70.8
Q ss_pred cCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccc-cCCCCCCCEEeCcCCCCCCcCCCcCC
Q 027602 110 VNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQ-LGNLSSLRYLDLSRNFLYVVNFGWLS 188 (221)
Q Consensus 110 ~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~-l~~l~~L~~L~l~~N~l~~~~~p~~~ 188 (221)
+..++.-++.|+.|+|++|+++ .+. .+..+++|++|||++|.+. .+|.- ..++. |+.|.+++|.++ .+..+.
T Consensus 179 mD~SLqll~ale~LnLshNk~~--~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~--tL~gie 251 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFT--KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT--TLRGIE 251 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhh--hhH-HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH--hhhhHH
Confidence 3455666788999999999998 454 6888999999999999987 56642 22333 899999999884 566778
Q ss_pred CCCCCCEEEcccCCCCCC
Q 027602 189 GLSFLEHLDFSTTRKMGF 206 (221)
Q Consensus 189 ~l~~L~~L~l~~N~l~g~ 206 (221)
++.+|+.||++.|-+.|-
T Consensus 252 ~LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred hhhhhhccchhHhhhhcc
Confidence 889999999999988763
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.89 E-value=6.4e-06 Score=71.17 Aligned_cols=89 Identities=35% Similarity=0.397 Sum_probs=46.7
Q ss_pred ccCccccCCC-CCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcC
Q 027602 109 KVNPSLLDLE-HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWL 187 (221)
Q Consensus 109 ~~p~~l~~l~-~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~ 187 (221)
.+++....++ +|+.|++++|.+. .+|..+..++.|+.|++++|+++ .+|...+.++.|+.|++++|++. .+|..
T Consensus 130 ~i~~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~--~l~~~ 204 (394)
T COG4886 130 DIPPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS--DLPPE 204 (394)
T ss_pred cCccccccchhhcccccccccchh--hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc--cCchh
Confidence 3444444443 5666666666665 45555555666666666666655 44444445555566666666553 44422
Q ss_pred -CCCCCCCEEEcccCC
Q 027602 188 -SGLSFLEHLDFSTTR 202 (221)
Q Consensus 188 -~~l~~L~~L~l~~N~ 202 (221)
.....|+++.+++|.
T Consensus 205 ~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 205 IELLSALEELDLSNNS 220 (394)
T ss_pred hhhhhhhhhhhhcCCc
Confidence 233445555555553
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.85 E-value=5.6e-06 Score=71.57 Aligned_cols=67 Identities=36% Similarity=0.605 Sum_probs=50.1
Q ss_pred ccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCC
Q 027602 109 KVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNF 178 (221)
Q Consensus 109 ~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~ 178 (221)
.+|..+.+++.|+.|++++|+++ .+|.....++.|+.|++++|++. .+|..+..+..|+.+++++|.
T Consensus 154 ~l~~~~~~l~~L~~L~l~~N~l~--~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 154 SLPSPLRNLPNLKNLDLSFNDLS--DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hhhhhhhccccccccccCCchhh--hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 55566788889999999999988 67776667788888888888887 566655555556666666663
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.80 E-value=1.1e-05 Score=70.42 Aligned_cols=91 Identities=29% Similarity=0.367 Sum_probs=63.7
Q ss_pred ccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCC
Q 027602 112 PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLS 191 (221)
Q Consensus 112 ~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~ 191 (221)
..+..+++|+.|++..|.+. .+...+..+++|++|++++|.++.. ..+..++.|+.|++++|.+. .+..+..+.
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~--~~~~~~~l~ 162 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLIS--DISGLESLK 162 (414)
T ss_pred cccccccceeeeeccccchh--hcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcch--hccCCccch
Confidence 34666777888888888887 4544466677888888888887633 24556666788888888874 566666677
Q ss_pred CCCEEEcccCCCCCCCC
Q 027602 192 FLEHLDFSTTRKMGFTD 208 (221)
Q Consensus 192 ~L~~L~l~~N~l~g~ip 208 (221)
+|+.+++++|.++..-+
T Consensus 163 ~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 163 SLKLLDLSYNRIVDIEN 179 (414)
T ss_pred hhhcccCCcchhhhhhh
Confidence 78888888887765433
No 42
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.75 E-value=1.8e-06 Score=63.22 Aligned_cols=87 Identities=25% Similarity=0.317 Sum_probs=71.0
Q ss_pred ccCCCCCcEEeCccCCCCCCccccccc-CCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCC
Q 027602 114 LLDLEHLSYLDLSFNDFQGVQIPRFIG-SMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSF 192 (221)
Q Consensus 114 l~~l~~L~~L~L~~n~l~g~~ip~~~~-~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~ 192 (221)
+....+|+..+|++|.+. .+|+.|. ..+..+.+++++|.++ .+|.++..++.|+.|+++.|.+. ..+..+..+.+
T Consensus 49 l~~~~el~~i~ls~N~fk--~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~ 124 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFK--KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIK 124 (177)
T ss_pred HhCCceEEEEecccchhh--hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHh
Confidence 445567888899999999 6787765 4568999999999998 78999999999999999999996 44435556888
Q ss_pred CCEEEcccCCCC
Q 027602 193 LEHLDFSTTRKM 204 (221)
Q Consensus 193 L~~L~l~~N~l~ 204 (221)
+..|+..+|.+.
T Consensus 125 l~~Lds~~na~~ 136 (177)
T KOG4579|consen 125 LDMLDSPENARA 136 (177)
T ss_pred HHHhcCCCCccc
Confidence 889988888764
No 43
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.71 E-value=2.4e-05 Score=62.81 Aligned_cols=67 Identities=21% Similarity=0.189 Sum_probs=32.4
Q ss_pred ccCCCCCcEEEccCC--cCCCCCccccCCCCCCCEEeCcCCCCCC-cCCCcCCCCCCCCEEEcccCCCCC
Q 027602 139 IGSMGNQKYLNLLGS--QFGGVIPHQLGNLSSLRYLDLSRNFLYV-VNFGWLSGLSFLEHLDFSTTRKMG 205 (221)
Q Consensus 139 ~~~l~~L~~L~l~~N--~l~g~~p~~l~~l~~L~~L~l~~N~l~~-~~~p~~~~l~~L~~L~l~~N~l~g 205 (221)
+..|++|+.|.++.| +.++.++.....+++|+++++++|++.. ..++.+..+.+|..|++.+|..++
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 344555555555555 4444444444444555555555555531 112233444555555555555444
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=1.7e-05 Score=67.95 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=28.2
Q ss_pred CCCcEEEccCCcCCCCCc--cccCCCCCCCEEeCcCCCCCCcCCCcC------CCCCCCCEEEcccCCC
Q 027602 143 GNQKYLNLLGSQFGGVIP--HQLGNLSSLRYLDLSRNFLYVVNFGWL------SGLSFLEHLDFSTTRK 203 (221)
Q Consensus 143 ~~L~~L~l~~N~l~g~~p--~~l~~l~~L~~L~l~~N~l~~~~~p~~------~~l~~L~~L~l~~N~l 203 (221)
..|+.|+|++|.+. ..+ ...+.++.|..|+++.+.+.....|.. ..+++|++|++..|++
T Consensus 246 ~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 246 QTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 34444455444443 122 233445555555555555543333322 2345666666666665
No 45
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.53 E-value=0.00014 Score=56.63 Aligned_cols=84 Identities=27% Similarity=0.244 Sum_probs=60.5
Q ss_pred cccCCCCCcEEeCccCCCCCCccccccc-CCCCCcEEEccCCcCCCCCc--cccCCCCCCCEEeCcCCCCCCcCCC----
Q 027602 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIG-SMGNQKYLNLLGSQFGGVIP--HQLGNLSSLRYLDLSRNFLYVVNFG---- 185 (221)
Q Consensus 113 ~l~~l~~L~~L~L~~n~l~g~~ip~~~~-~l~~L~~L~l~~N~l~g~~p--~~l~~l~~L~~L~l~~N~l~~~~~p---- 185 (221)
.|..++.|.+|.+.+|+++ .|.+.+. .+++|+.|.+.+|.+. .+- ..+..+++|++|.+-+|... ..--
T Consensus 59 ~lp~l~rL~tLll~nNrIt--~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~-~k~~YR~y 134 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRIT--RIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVE-HKKNYRLY 134 (233)
T ss_pred cCCCccccceEEecCCcce--eeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchh-cccCceeE
Confidence 3667888899999999998 4554443 4677899999998875 221 34667788999999888875 2221
Q ss_pred cCCCCCCCCEEEccc
Q 027602 186 WLSGLSFLEHLDFST 200 (221)
Q Consensus 186 ~~~~l~~L~~L~l~~ 200 (221)
.+..+++|++||+.+
T Consensus 135 vl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 135 VLYKLPSLRTLDFQK 149 (233)
T ss_pred EEEecCcceEeehhh
Confidence 456788899888764
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.41 E-value=7.1e-05 Score=70.92 Aligned_cols=91 Identities=29% Similarity=0.332 Sum_probs=75.3
Q ss_pred CCCCcEEeCccCC--CCCCccc-ccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCC
Q 027602 117 LEHLSYLDLSFND--FQGVQIP-RFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSF 192 (221)
Q Consensus 117 l~~L~~L~L~~n~--l~g~~ip-~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~ 192 (221)
.+.|++|-+..|. +. .++ ..|..++.|+.||+++|.=-+.+|..++.+-+|++|+++...++ .+| .+.++..
T Consensus 544 ~~~L~tLll~~n~~~l~--~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLL--EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKK 619 (889)
T ss_pred CCccceEEEeecchhhh--hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHh
Confidence 3478899998886 44 444 44788999999999998877799999999999999999999995 666 8899999
Q ss_pred CCEEEcccCCCCCCCCccc
Q 027602 193 LEHLDFSTTRKMGFTDTKL 211 (221)
Q Consensus 193 L~~L~l~~N~l~g~ip~~~ 211 (221)
|.+|++..+.....+|...
T Consensus 620 L~~Lnl~~~~~l~~~~~i~ 638 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGIL 638 (889)
T ss_pred hheeccccccccccccchh
Confidence 9999999887666665433
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.35 E-value=0.00025 Score=55.25 Aligned_cols=87 Identities=20% Similarity=0.167 Sum_probs=67.5
Q ss_pred CCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC-cCCCcCCCCCCCCE
Q 027602 117 LEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV-VNFGWLSGLSFLEH 195 (221)
Q Consensus 117 l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~-~~~p~~~~l~~L~~ 195 (221)
+.+...+|+++|.+- .+ +.+..++.|.+|.+.+|+++..-|.--..+++|+.|.+.+|++.. +.+..+..++.|++
T Consensus 41 ~d~~d~iDLtdNdl~--~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR--KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchh--hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 456778899999987 33 447888999999999999985555433456889999999998842 33446778899999
Q ss_pred EEcccCCCCCC
Q 027602 196 LDFSTTRKMGF 206 (221)
Q Consensus 196 L~l~~N~l~g~ 206 (221)
|.+-+|..+-.
T Consensus 118 Ltll~Npv~~k 128 (233)
T KOG1644|consen 118 LTLLGNPVEHK 128 (233)
T ss_pred eeecCCchhcc
Confidence 99999987653
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.33 E-value=4.4e-06 Score=75.71 Aligned_cols=96 Identities=28% Similarity=0.241 Sum_probs=73.6
Q ss_pred CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602 102 PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV 181 (221)
Q Consensus 102 ~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~ 181 (221)
++|++...- .+..+++|+.|||++|.+. .+|..-..--+|+.|.+.+|.++. + ..+.++.+|+.||++.|-+.
T Consensus 195 shNk~~~v~--~Lr~l~~LkhLDlsyN~L~--~vp~l~~~gc~L~~L~lrnN~l~t-L-~gie~LksL~~LDlsyNll~- 267 (1096)
T KOG1859|consen 195 SHNKFTKVD--NLRRLPKLKHLDLSYNCLR--HVPQLSMVGCKLQLLNLRNNALTT-L-RGIENLKSLYGLDLSYNLLS- 267 (1096)
T ss_pred chhhhhhhH--HHHhcccccccccccchhc--cccccchhhhhheeeeecccHHHh-h-hhHHhhhhhhccchhHhhhh-
Confidence 346776443 6788999999999999999 787643322359999999999873 2 46788999999999999886
Q ss_pred cCC--CcCCCCCCCCEEEcccCCCC
Q 027602 182 VNF--GWLSGLSFLEHLDFSTTRKM 204 (221)
Q Consensus 182 ~~~--p~~~~l~~L~~L~l~~N~l~ 204 (221)
+.- ..+..+..|+.|.|.+|.+-
T Consensus 268 ~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 268 EHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cchhhhHHHHHHHHHHHhhcCCccc
Confidence 222 24556788899999999874
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=8.9e-05 Score=63.70 Aligned_cols=89 Identities=25% Similarity=0.310 Sum_probs=61.9
Q ss_pred ccCCCCCcEEeCccCCCCCCccc--ccccCCCCCcEEEccCCcCCCC-Cccc-----cCCCCCCCEEeCcCCCCCCcCCC
Q 027602 114 LLDLEHLSYLDLSFNDFQGVQIP--RFIGSMGNQKYLNLLGSQFGGV-IPHQ-----LGNLSSLRYLDLSRNFLYVVNFG 185 (221)
Q Consensus 114 l~~l~~L~~L~L~~n~l~g~~ip--~~~~~l~~L~~L~l~~N~l~g~-~p~~-----l~~l~~L~~L~l~~N~l~~~~~p 185 (221)
...+..|+.|||++|.+- ..+ ...+.++.|..|+++.+.+... .|+. ...+++|++|++..|++. ..+
T Consensus 242 ~~i~~~L~~LdLs~N~li--~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~--~w~ 317 (505)
T KOG3207|consen 242 TKILQTLQELDLSNNNLI--DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR--DWR 317 (505)
T ss_pred hhhhhHHhhccccCCccc--ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc--ccc
Confidence 345678888899888877 344 4467788888888888887532 2322 245688999999999884 444
Q ss_pred ---cCCCCCCCCEEEcccCCCCCC
Q 027602 186 ---WLSGLSFLEHLDFSTTRKMGF 206 (221)
Q Consensus 186 ---~~~~l~~L~~L~l~~N~l~g~ 206 (221)
.+..+.+|++|....|.|+-+
T Consensus 318 sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 318 SLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccchhhccchhhhhhccccccccc
Confidence 344466778888778877654
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.28 E-value=7.7e-05 Score=65.11 Aligned_cols=87 Identities=26% Similarity=0.310 Sum_probs=72.2
Q ss_pred cCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCC
Q 027602 115 LDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLE 194 (221)
Q Consensus 115 ~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~ 194 (221)
..+..++.+.++.|.+. .+-..+..+++|+.+++.+|.+.+ +...+..+++|++|++++|.++ .+..+..++.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~--~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~--~i~~l~~l~~L~ 143 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA--KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT--KLEGLSTLTLLK 143 (414)
T ss_pred HHhHhHHhhccchhhhh--hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccc--cccchhhccchh
Confidence 45677888889999988 555567889999999999999974 4333778999999999999994 777777888899
Q ss_pred EEEcccCCCCCC
Q 027602 195 HLDFSTTRKMGF 206 (221)
Q Consensus 195 ~L~l~~N~l~g~ 206 (221)
.|++++|.++..
T Consensus 144 ~L~l~~N~i~~~ 155 (414)
T KOG0531|consen 144 ELNLSGNLISDI 155 (414)
T ss_pred hheeccCcchhc
Confidence 999999999863
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.00023 Score=58.62 Aligned_cols=88 Identities=22% Similarity=0.146 Sum_probs=57.3
Q ss_pred CCCCCcEEeCccCCCCC-CcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCC
Q 027602 116 DLEHLSYLDLSFNDFQG-VQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFL 193 (221)
Q Consensus 116 ~l~~L~~L~L~~n~l~g-~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L 193 (221)
..+.++.+||.+|.++. ..|-..+.+||.|++|+++.|.+...|-..-....+|+.|-+.+..+...... .+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 35677888888888883 02333456788888888888887644322113456788888877776533333 44557777
Q ss_pred CEEEcccCCC
Q 027602 194 EHLDFSTTRK 203 (221)
Q Consensus 194 ~~L~l~~N~l 203 (221)
+.|+++.|.+
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 7777777744
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.90 E-value=0.00045 Score=63.98 Aligned_cols=95 Identities=24% Similarity=0.134 Sum_probs=70.2
Q ss_pred cCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC-CCccccCCCCCCCEEeCcCCCCCCcC-CC--
Q 027602 110 VNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG-VIPHQLGNLSSLRYLDLSRNFLYVVN-FG-- 185 (221)
Q Consensus 110 ~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g-~~p~~l~~l~~L~~L~l~~N~l~~~~-~p-- 185 (221)
+..-..++++|..||+++.+++ .+ ..++++++|+.|.+.+=.+.. ..-..+.+|++|+.||+|..+..... +.
T Consensus 165 F~~lc~sFpNL~sLDIS~TnI~--nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~q 241 (699)
T KOG3665|consen 165 FSQLCASFPNLRSLDISGTNIS--NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQ 241 (699)
T ss_pred HHHHhhccCccceeecCCCCcc--Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHH
Confidence 4444568899999999999998 34 668899999999887766642 22246778999999999987764232 11
Q ss_pred --cC-CCCCCCCEEEcccCCCCCCC
Q 027602 186 --WL-SGLSFLEHLDFSTTRKMGFT 207 (221)
Q Consensus 186 --~~-~~l~~L~~L~l~~N~l~g~i 207 (221)
+. ..+++|+.||.+++.+++.+
T Consensus 242 Ylec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 242 YLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HHHhcccCccccEEecCCcchhHHH
Confidence 12 24899999999988887754
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.73 E-value=0.00066 Score=54.69 Aligned_cols=83 Identities=28% Similarity=0.217 Sum_probs=59.4
Q ss_pred cccCCCCCcEEeCccC--CCCCCcccccccCCCCCcEEEccCCcCCCCCccc---cCCCCCCCEEeCcCCCCCCcCCC--
Q 027602 113 SLLDLEHLSYLDLSFN--DFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQ---LGNLSSLRYLDLSRNFLYVVNFG-- 185 (221)
Q Consensus 113 ~l~~l~~L~~L~L~~n--~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~---l~~l~~L~~L~l~~N~l~~~~~p-- 185 (221)
.+..|++|+.|.++.| ++++ .++.-...+++|+++++++|++. ++.. +..+.+|..|++.+|..+...=.
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre 136 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLKSLDLFNCSVTNLDDYRE 136 (260)
T ss_pred cCCCcchhhhhcccCCcccccc-cceehhhhCCceeEEeecCCccc--cccccchhhhhcchhhhhcccCCccccccHHH
Confidence 3556789999999999 7776 56655566799999999999986 2443 45567888999998876521111
Q ss_pred -cCCCCCCCCEEEc
Q 027602 186 -WLSGLSFLEHLDF 198 (221)
Q Consensus 186 -~~~~l~~L~~L~l 198 (221)
.|.-+++|++|+-
T Consensus 137 ~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 137 KVFLLLPSLKYLDG 150 (260)
T ss_pred HHHHHhhhhccccc
Confidence 3445778877753
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.24 E-value=0.00062 Score=57.04 Aligned_cols=92 Identities=24% Similarity=0.211 Sum_probs=65.5
Q ss_pred ccccCCCCCcEEeCccCCCCCC---cccccccCCCCCcEEEccCCcCCCCCc----ccc-CCCCCCCEEeCcCCCCCCcC
Q 027602 112 PSLLDLEHLSYLDLSFNDFQGV---QIPRFIGSMGNQKYLNLLGSQFGGVIP----HQL-GNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 112 ~~l~~l~~L~~L~L~~n~l~g~---~ip~~~~~l~~L~~L~l~~N~l~g~~p----~~l-~~l~~L~~L~l~~N~l~~~~ 183 (221)
..+..+++|++|||+.|-++-. .+...++.+++|+.++++++.+...-. ..+ ...++|+.+.+.+|.++...
T Consensus 207 eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence 4567789999999999988730 133556778889999999988764322 122 23678999999999886221
Q ss_pred C---C-cCCCCCCCCEEEcccCCC
Q 027602 184 F---G-WLSGLSFLEHLDFSTTRK 203 (221)
Q Consensus 184 ~---p-~~~~l~~L~~L~l~~N~l 203 (221)
. . .+...+.|..|+|++|.+
T Consensus 287 ~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 287 ALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHhcchhhHHhcCCcccc
Confidence 1 1 344578899999999998
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.14 E-value=0.0025 Score=53.56 Aligned_cols=10 Identities=20% Similarity=0.478 Sum_probs=6.3
Q ss_pred cEEEEEcCCC
Q 027602 79 HILELNLRNP 88 (221)
Q Consensus 79 ~v~~l~l~~~ 88 (221)
+++.++|+.+
T Consensus 93 ~L~~ldLSDN 102 (382)
T KOG1909|consen 93 KLQKLDLSDN 102 (382)
T ss_pred ceeEeecccc
Confidence 5666666664
No 56
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.08 E-value=0.0017 Score=31.97 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=13.5
Q ss_pred CCCEEEcccCCCCCCCCcccc
Q 027602 192 FLEHLDFSTTRKMGFTDTKLV 212 (221)
Q Consensus 192 ~L~~L~l~~N~l~g~ip~~~~ 212 (221)
+|++|++++|+|+ .||..+.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 4677777777777 6776543
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.03 E-value=0.0031 Score=58.56 Aligned_cols=87 Identities=21% Similarity=0.238 Sum_probs=62.5
Q ss_pred CCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC-cCCCcCCCCCCCC
Q 027602 116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV-VNFGWLSGLSFLE 194 (221)
Q Consensus 116 ~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~-~~~p~~~~l~~L~ 194 (221)
.||+|+.|.+.+-.+.....-....++++|..||+++..++- + ..++.+++|+.|.+.+=.+.. ..+-.+.++++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 468888888888777541233344578889999999988763 3 667888888888887655542 2233678899999
Q ss_pred EEEcccCCCC
Q 027602 195 HLDFSTTRKM 204 (221)
Q Consensus 195 ~L~l~~N~l~ 204 (221)
+||+|..+..
T Consensus 224 vLDIS~~~~~ 233 (699)
T KOG3665|consen 224 VLDISRDKNN 233 (699)
T ss_pred eeeccccccc
Confidence 9999986554
No 58
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.02 E-value=0.0025 Score=31.35 Aligned_cols=18 Identities=33% Similarity=0.689 Sum_probs=8.1
Q ss_pred CcEEEccCCcCCCCCcccc
Q 027602 145 QKYLNLLGSQFGGVIPHQL 163 (221)
Q Consensus 145 L~~L~l~~N~l~g~~p~~l 163 (221)
|++|++++|+++ .+|+.+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444444444444 444433
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.85 E-value=0.031 Score=48.66 Aligned_cols=30 Identities=20% Similarity=0.146 Sum_probs=15.6
Q ss_pred CCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccC
Q 027602 168 SLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTT 201 (221)
Q Consensus 168 ~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N 201 (221)
+|++|++++|... .+| .+. .+|++|+++.|
T Consensus 157 SLk~L~Is~c~~i--~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNI--ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCcc--cCccccc--ccCcEEEeccc
Confidence 5666666665542 222 222 36666666654
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=0.0043 Score=51.38 Aligned_cols=75 Identities=24% Similarity=0.318 Sum_probs=48.6
Q ss_pred CCCcc--ccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCc-cccCCCCCCCEEeCcCCCC
Q 027602 104 SMLVG--KVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIP-HQLGNLSSLRYLDLSRNFL 179 (221)
Q Consensus 104 n~l~g--~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p-~~l~~l~~L~~L~l~~N~l 179 (221)
|.++. .+..-+.+++.|++|+++.|.++. .|-..-..+.+|+.|-|.+..+...-- ..+..++.++.|.++.|++
T Consensus 81 N~iSdWseI~~ile~lP~l~~LNls~N~L~s-~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 81 NLISDWSEIGAILEQLPALTTLNLSCNSLSS-DIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred chhccHHHHHHHHhcCccceEeeccCCcCCC-ccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 45552 344456788999999999998885 443221355678888888877654322 3345667777777777743
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.98 E-value=0.063 Score=46.78 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=26.9
Q ss_pred CCcEEeCcc-CCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCC
Q 027602 119 HLSYLDLSF-NDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFL 179 (221)
Q Consensus 119 ~L~~L~L~~-n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l 179 (221)
+|+.|.+++ +.++ .+|..+. ++|++|.+++|.....+|. +|+.|++..|..
T Consensus 73 sLtsL~Lsnc~nLt--sLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~~ 124 (426)
T PRK15386 73 ELTEITIENCNNLT--TLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSLEIKGSAT 124 (426)
T ss_pred CCcEEEccCCCCcc--cCCchhh--hhhhheEccCccccccccc------ccceEEeCCCCC
Confidence 466677665 3443 4555442 4677777776622223443 355566655443
No 62
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.0022 Score=53.07 Aligned_cols=57 Identities=23% Similarity=0.092 Sum_probs=28.1
Q ss_pred CCCCCcEEEccCCc-CCCCCccccCCCCCCCEEeCcCCCCCCcCCC----cCCCCCCCCEEEccc
Q 027602 141 SMGNQKYLNLLGSQ-FGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG----WLSGLSFLEHLDFST 200 (221)
Q Consensus 141 ~l~~L~~L~l~~N~-l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p----~~~~l~~L~~L~l~~ 200 (221)
.+++|.+|||+++. ++...-..+.+++.|++|.++.++. .+| .+...++|.+|++.+
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~---i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD---IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC---CChHHeeeeccCcceEEEEecc
Confidence 34555566665543 2222223344555666666655542 233 344456666665443
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.77 E-value=0.017 Score=47.43 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=72.2
Q ss_pred CcEEEEEcCCCCCCCCCCccccCCCCCCCccc----cCccccCCCCCcEEeCccCCCCCC--ccc-------ccccCCCC
Q 027602 78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGK----VNPSLLDLEHLSYLDLSFNDFQGV--QIP-------RFIGSMGN 144 (221)
Q Consensus 78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~----~p~~l~~l~~L~~L~L~~n~l~g~--~ip-------~~~~~l~~ 144 (221)
..++.++|++ |.+... +-..+.+-.+|++.+++.-..... .++ +.+-++++
T Consensus 30 d~~~evdLSG----------------NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~ 93 (388)
T COG5238 30 DELVEVDLSG----------------NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPR 93 (388)
T ss_pred cceeEEeccC----------------CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCc
Confidence 4678888888 455432 333455667777777765432210 223 34556889
Q ss_pred CcEEEccCCcCCCCCcccc----CCCCCCCEEeCcCCCCCCcCCC--c-------------CCCCCCCCEEEcccCCCCC
Q 027602 145 QKYLNLLGSQFGGVIPHQL----GNLSSLRYLDLSRNFLYVVNFG--W-------------LSGLSFLEHLDFSTTRKMG 205 (221)
Q Consensus 145 L~~L~l~~N~l~g~~p~~l----~~l~~L~~L~l~~N~l~~~~~p--~-------------~~~l~~L~~L~l~~N~l~g 205 (221)
|+..+||+|.|....|+.+ ..-+.|.+|.+++|.+ |++. . ...-+.|+++..+.|++..
T Consensus 94 l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl--Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen 171 (388)
T COG5238 94 LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL--GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN 171 (388)
T ss_pred ceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC--CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence 9999999999987777654 4557899999999987 4442 1 2235678888888887753
No 64
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.72 E-value=0.0005 Score=54.84 Aligned_cols=63 Identities=14% Similarity=0.078 Sum_probs=35.9
Q ss_pred ccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCC
Q 027602 114 LLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFL 179 (221)
Q Consensus 114 l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l 179 (221)
+.-++.+..|+++.|.+. ..|..++....+..+++..|..+ ..|.+++..+.++++++..|.|
T Consensus 61 ~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred hHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 344455555566666555 45555555555555555555554 4555666666666666655554
No 65
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.91 E-value=0.036 Score=25.36 Aligned_cols=13 Identities=46% Similarity=0.524 Sum_probs=5.2
Q ss_pred CCcEEeCccCCCC
Q 027602 119 HLSYLDLSFNDFQ 131 (221)
Q Consensus 119 ~L~~L~L~~n~l~ 131 (221)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.69 E-value=0.0027 Score=52.09 Aligned_cols=62 Identities=27% Similarity=0.217 Sum_probs=40.8
Q ss_pred cCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCc--cccCCCCCCCEEeCcCCCCC
Q 027602 115 LDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIP--HQLGNLSSLRYLDLSRNFLY 180 (221)
Q Consensus 115 ~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p--~~l~~l~~L~~L~l~~N~l~ 180 (221)
..|+.|++|.|+-|.++. + ..+..+++|++|+|..|.+.. +- .-+.++++|+.|-|..|.-.
T Consensus 38 ~kMp~lEVLsLSvNkIss--L-~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISS--L-APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred HhcccceeEEeecccccc--c-hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCCcc
Confidence 456777777777777773 3 335667777777777777652 22 23456777777777777765
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.42 E-value=0.0042 Score=50.99 Aligned_cols=58 Identities=22% Similarity=0.234 Sum_probs=33.6
Q ss_pred ccCCCCCcEEeCccCCCCCCccc--ccccCCCCCcEEEccCCcCCCCCccc-----cCCCCCCCEEe
Q 027602 114 LLDLEHLSYLDLSFNDFQGVQIP--RFIGSMGNQKYLNLLGSQFGGVIPHQ-----LGNLSSLRYLD 173 (221)
Q Consensus 114 l~~l~~L~~L~L~~n~l~g~~ip--~~~~~l~~L~~L~l~~N~l~g~~p~~-----l~~l~~L~~L~ 173 (221)
+..++.|++|+|..|.|.. +. .-+.++++|+.|.|..|.-.|.-+.. +.-|++|+.||
T Consensus 59 l~rCtrLkElYLRkN~I~s--ldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 59 LQRCTRLKELYLRKNCIES--LDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHHHHHHHHhccccc--HHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 4556667777777776663 32 22456667777777777666554432 23455666553
No 68
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=0.0019 Score=53.48 Aligned_cols=90 Identities=23% Similarity=0.173 Sum_probs=62.4
Q ss_pred CCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCC-CCCcCCC-cCCCCCCCCE
Q 027602 118 EHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNF-LYVVNFG-WLSGLSFLEH 195 (221)
Q Consensus 118 ~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~-l~~~~~p-~~~~l~~L~~ 195 (221)
+.|+.|||++..++....-..+..+.+|+.|.+.++++...+-..+.+-.+|+.++++... ++.-... .+..++.|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3488888888877742333445667888888888888887777777777888888887653 4322222 4556788888
Q ss_pred EEcccCCCCCCC
Q 027602 196 LDFSTTRKMGFT 207 (221)
Q Consensus 196 L~l~~N~l~g~i 207 (221)
|+++-+.++-++
T Consensus 265 LNlsWc~l~~~~ 276 (419)
T KOG2120|consen 265 LNLSWCFLFTEK 276 (419)
T ss_pred cCchHhhccchh
Confidence 888877666543
No 69
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.01 E-value=0.0026 Score=50.93 Aligned_cols=87 Identities=13% Similarity=0.075 Sum_probs=63.3
Q ss_pred cccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCC
Q 027602 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLS 191 (221)
Q Consensus 113 ~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~ 191 (221)
++..+...+.||++.|++. .+-..+.-++.+..++++.|.+. .+|..++.+..++.++++.|..+ ..| +++..+
T Consensus 37 ei~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~--~~p~s~~k~~ 111 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS--QQPKSQKKEP 111 (326)
T ss_pred hhhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh--hCCccccccC
Confidence 4566677778888888776 45556666777788888887775 57777777777788888877774 445 777778
Q ss_pred CCCEEEcccCCCC
Q 027602 192 FLEHLDFSTTRKM 204 (221)
Q Consensus 192 ~L~~L~l~~N~l~ 204 (221)
.++++++-+|.|+
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 8888777777654
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.55 E-value=0.55 Score=33.32 Aligned_cols=88 Identities=11% Similarity=0.221 Sum_probs=46.3
Q ss_pred CCccccCccccCCCCCcEEeCccCCCCCCccc-ccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 105 MLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIP-RFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 105 ~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip-~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
.+...-...|.++++|+.+.+..+ +. .++ ..+..++.++.+.+.+ .+...-...+..+++|+.+++..+ +. .
T Consensus 22 ~~~~I~~~~F~~~~~l~~i~~~~~-~~--~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~--~ 94 (129)
T PF13306_consen 22 TIKKIGENAFSNCTSLKSINFPNN-LT--SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT--E 94 (129)
T ss_dssp T--EE-TTTTTT-TT-SEEEESST-TS--CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--B--E
T ss_pred CeeEeChhhccccccccccccccc-cc--ccceeeeecccccccccccc-cccccccccccccccccccccCcc-cc--E
Confidence 344333445777878888888775 55 344 3467777888888865 332122235566888889888765 42 3
Q ss_pred CC--cCCCCCCCCEEEccc
Q 027602 184 FG--WLSGLSFLEHLDFST 200 (221)
Q Consensus 184 ~p--~~~~l~~L~~L~l~~ 200 (221)
++ .+.++ +|+.+.+..
T Consensus 95 i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 95 IGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EHTTTTTT--T--EEE-TT
T ss_pred EchhhhcCC-CceEEEECC
Confidence 33 56666 788887664
No 71
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.26 E-value=0.17 Score=41.70 Aligned_cols=66 Identities=29% Similarity=0.304 Sum_probs=42.8
Q ss_pred cccCCCCCcEEeCccCCCCCCccccc----ccCCCCCcEEEccCCcCCCCCc-c-------------ccCCCCCCCEEeC
Q 027602 113 SLLDLEHLSYLDLSFNDFQGVQIPRF----IGSMGNQKYLNLLGSQFGGVIP-H-------------QLGNLSSLRYLDL 174 (221)
Q Consensus 113 ~l~~l~~L~~L~L~~n~l~g~~ip~~----~~~l~~L~~L~l~~N~l~g~~p-~-------------~l~~l~~L~~L~l 174 (221)
.+..+++|+..+|+.|.+.. ..|+. +.+-+.|++|.+++|.+. ++. . ...+-+.|+.+..
T Consensus 87 aLlkcp~l~~v~LSDNAfg~-~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGS-EFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHhcCCcceeeeccccccCc-ccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 34567888888888888876 55543 455677888888888763 221 1 1223456777777
Q ss_pred cCCCCC
Q 027602 175 SRNFLY 180 (221)
Q Consensus 175 ~~N~l~ 180 (221)
..|++.
T Consensus 165 grNRle 170 (388)
T COG5238 165 GRNRLE 170 (388)
T ss_pred ccchhc
Confidence 777664
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.16 E-value=0.13 Score=26.07 Aligned_cols=14 Identities=43% Similarity=0.489 Sum_probs=8.0
Q ss_pred CCCcEEeCccCCCC
Q 027602 118 EHLSYLDLSFNDFQ 131 (221)
Q Consensus 118 ~~L~~L~L~~n~l~ 131 (221)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45555556555555
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.16 E-value=0.13 Score=26.07 Aligned_cols=14 Identities=43% Similarity=0.489 Sum_probs=8.0
Q ss_pred CCCcEEeCccCCCC
Q 027602 118 EHLSYLDLSFNDFQ 131 (221)
Q Consensus 118 ~~L~~L~L~~n~l~ 131 (221)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45555556555555
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.14 E-value=0.66 Score=32.89 Aligned_cols=84 Identities=13% Similarity=0.201 Sum_probs=49.4
Q ss_pred cccCCCCCcEEeCccCCCCCCccc-ccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCC
Q 027602 113 SLLDLEHLSYLDLSFNDFQGVQIP-RFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLS 191 (221)
Q Consensus 113 ~l~~l~~L~~L~L~~n~l~g~~ip-~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~ 191 (221)
.|.++++|+.+.+.. .+. .++ ..|..+++|+.+.+..+ +...-...+.++++++.+.+.+ .+....-..+..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~--~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK--KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-Cee--EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 467788899999874 565 444 45778889999999886 5422234567787899999976 33212222666789
Q ss_pred CCCEEEcccC
Q 027602 192 FLEHLDFSTT 201 (221)
Q Consensus 192 ~L~~L~l~~N 201 (221)
+|+.+++..+
T Consensus 82 ~l~~i~~~~~ 91 (129)
T PF13306_consen 82 NLKNIDIPSN 91 (129)
T ss_dssp TECEEEETTT
T ss_pred cccccccCcc
Confidence 9999998655
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.46 E-value=0.5 Score=23.28 Aligned_cols=16 Identities=31% Similarity=0.283 Sum_probs=9.7
Q ss_pred CCCCEEEcccCCCCCC
Q 027602 191 SFLEHLDFSTTRKMGF 206 (221)
Q Consensus 191 ~~L~~L~l~~N~l~g~ 206 (221)
++|++|++++|+|+..
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 5677778877776643
No 76
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.14 E-value=1.3 Score=22.68 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=10.1
Q ss_pred CCCCEEEcccCCCC
Q 027602 191 SFLEHLDFSTTRKM 204 (221)
Q Consensus 191 ~~L~~L~l~~N~l~ 204 (221)
.+|++|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56777777777774
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.07 E-value=0.15 Score=40.01 Aligned_cols=32 Identities=31% Similarity=0.245 Sum_probs=13.6
Q ss_pred CCCCEEeCcCCC-CCCcCCCcCCCCCCCCEEEc
Q 027602 167 SSLRYLDLSRNF-LYVVNFGWLSGLSFLEHLDF 198 (221)
Q Consensus 167 ~~L~~L~l~~N~-l~~~~~p~~~~l~~L~~L~l 198 (221)
++|+.|++++|. |+.+.+-.+..+++|+.|.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 455555555443 33222223334444444433
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.05 E-value=1.6 Score=22.36 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=7.5
Q ss_pred CCcEEeCccCCCC
Q 027602 119 HLSYLDLSFNDFQ 131 (221)
Q Consensus 119 ~L~~L~L~~n~l~ 131 (221)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555566666655
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=77.72 E-value=2 Score=22.15 Aligned_cols=14 Identities=29% Similarity=0.320 Sum_probs=9.4
Q ss_pred CCCCEEEcccCCCC
Q 027602 191 SFLEHLDFSTTRKM 204 (221)
Q Consensus 191 ~~L~~L~l~~N~l~ 204 (221)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777764
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=68.66 E-value=2.5 Score=36.98 Aligned_cols=90 Identities=23% Similarity=0.146 Sum_probs=51.2
Q ss_pred ccCCCCCcEEeCccC-CCCCCccc----ccccCCCCCcEEEccCCc-CCCCCccccC-CCCCCCEEeCcCCC-CCCcCCC
Q 027602 114 LLDLEHLSYLDLSFN-DFQGVQIP----RFIGSMGNQKYLNLLGSQ-FGGVIPHQLG-NLSSLRYLDLSRNF-LYVVNFG 185 (221)
Q Consensus 114 l~~l~~L~~L~L~~n-~l~g~~ip----~~~~~l~~L~~L~l~~N~-l~g~~p~~l~-~l~~L~~L~l~~N~-l~~~~~p 185 (221)
...+++|+.|+++++ .... ..+ .....+++|+.+++++.. ++...-..+. .+++|++|.+.++. ++...+-
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~ 288 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLIT-LSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLV 288 (482)
T ss_pred HhhCchhheecccCcccccc-cchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHH
Confidence 445677888888762 1111 111 223345777888887776 4432222222 36788888866665 4433333
Q ss_pred c-CCCCCCCCEEEcccCCCC
Q 027602 186 W-LSGLSFLEHLDFSTTRKM 204 (221)
Q Consensus 186 ~-~~~l~~L~~L~l~~N~l~ 204 (221)
. ...+++|++|+++.+...
T Consensus 289 ~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 289 SIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHHhcCcccEEeeecCccc
Confidence 3 334778888888876543
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.59 E-value=1.2 Score=34.97 Aligned_cols=72 Identities=21% Similarity=0.112 Sum_probs=43.4
Q ss_pred CCccccCccccCCCCCcEEeCccCCCCCCccccccc-CCCCCcEEEccCCc-CCCCCccccCCCCCCCEEeCcC
Q 027602 105 MLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIG-SMGNQKYLNLLGSQ-FGGVIPHQLGNLSSLRYLDLSR 176 (221)
Q Consensus 105 ~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~-~l~~L~~L~l~~N~-l~g~~p~~l~~l~~L~~L~l~~ 176 (221)
.+...=-+.+.+++.++.|.+.++.--+-..-..++ -.++|+.|++++|. ++..--..+..+++|+.|.+.+
T Consensus 112 ~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 112 SIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred hHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 444444455677788888877766433201112222 35789999999774 5533334566778888887754
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=38.48 E-value=15 Score=33.27 Aligned_cols=65 Identities=22% Similarity=0.153 Sum_probs=33.5
Q ss_pred CCCCCcEEeCccCCCCCCc-ccccccCCCCCcEEEccCCcCCCCCccccCCC--CCCCEEeCcCCCCC
Q 027602 116 DLEHLSYLDLSFNDFQGVQ-IPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNL--SSLRYLDLSRNFLY 180 (221)
Q Consensus 116 ~l~~L~~L~L~~n~l~g~~-ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l--~~L~~L~l~~N~l~ 180 (221)
+.+.+..+.|++|++.... +..--...++|..|+|++|+..-..-.++.++ ..|+.|-+.+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 4556666777777766310 11111235677777777772111111222222 34677777777765
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.18 E-value=19 Score=32.65 Aligned_cols=65 Identities=22% Similarity=0.143 Sum_probs=33.0
Q ss_pred CCCCCcEEEccCCcCCCCCc-ccc-CCCCCCCEEeCcCC--CCCC-cCCCcCCCCCCCCEEEcccCCCCCC
Q 027602 141 SMGNQKYLNLLGSQFGGVIP-HQL-GNLSSLRYLDLSRN--FLYV-VNFGWLSGLSFLEHLDFSTTRKMGF 206 (221)
Q Consensus 141 ~l~~L~~L~l~~N~l~g~~p-~~l-~~l~~L~~L~l~~N--~l~~-~~~p~~~~l~~L~~L~l~~N~l~g~ 206 (221)
+.+.+..++|++|++...-- ..+ ...++|..|+|++| .+.. ..++.++. ..|+.|-+.+|.+.-+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccccc
Confidence 34556667777777642100 011 23366777777777 3321 11112222 3466777777776654
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=33.69 E-value=1.8 Score=38.76 Aligned_cols=38 Identities=34% Similarity=0.329 Sum_probs=16.9
Q ss_pred CCCCEEeCcCCCCCCcCCC----cCCCCCCCCEEEcccCCCC
Q 027602 167 SSLRYLDLSRNFLYVVNFG----WLSGLSFLEHLDFSTTRKM 204 (221)
Q Consensus 167 ~~L~~L~l~~N~l~~~~~p----~~~~l~~L~~L~l~~N~l~ 204 (221)
..++++++..|.++..... .+..++.++.+.+++|.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3445555555555422211 2233445555555555544
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=33.26 E-value=30 Score=17.04 Aligned_cols=13 Identities=31% Similarity=0.302 Sum_probs=8.9
Q ss_pred CCCCCEEEcccCC
Q 027602 190 LSFLEHLDFSTTR 202 (221)
Q Consensus 190 l~~L~~L~l~~N~ 202 (221)
+++|++|+++++.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3567777777764
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=32.33 E-value=31 Score=37.43 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=25.3
Q ss_pred eCccCCCCCCcccc-cccCCCCCcEEEccCCcCC
Q 027602 124 DLSFNDFQGVQIPR-FIGSMGNQKYLNLLGSQFG 156 (221)
Q Consensus 124 ~L~~n~l~g~~ip~-~~~~l~~L~~L~l~~N~l~ 156 (221)
||++|+|+ .+|. .|..+++|++|+|++|.+.
T Consensus 1 DLSnN~Ls--tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS--TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC--ccChHHhccCCCceEEEeeCCccc
Confidence 68899999 5554 5778899999999999874
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.47 E-value=51 Score=35.93 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=23.4
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQ 131 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~ 131 (221)
|+|.-.-+..|..+++|+.|+|++|.+.
T Consensus 5 N~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 5 NKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CcCCccChHHhccCCCceEEEeeCCccc
Confidence 7787666667888999999999999876
No 88
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=20.64 E-value=3.2e+02 Score=20.26 Aligned_cols=17 Identities=6% Similarity=0.050 Sum_probs=9.2
Q ss_pred CCCHHHHHHHHHHHhhC
Q 027602 33 GCLESEREVLLRFKQDL 49 (221)
Q Consensus 33 ~~~~~~~~~L~~~~~~l 49 (221)
...++|.+.+....+.+
T Consensus 29 tysp~~l~~i~~~~~~i 45 (142)
T TIGR03042 29 TYSPAQLAQIQRQAEGI 45 (142)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 45566666655544443
Done!