Query 027602
Match_columns 221
No_of_seqs 285 out of 2668
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 21:06:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027602.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027602hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 2.1E-28 7.2E-33 203.7 11.8 176 33-211 2-194 (313)
2 3rgz_A Protein brassinosteroid 99.9 3.7E-25 1.3E-29 204.2 10.8 169 32-209 7-196 (768)
3 4eco_A Uncharacterized protein 99.9 7.1E-25 2.4E-29 198.5 10.9 56 32-88 25-91 (636)
4 4ecn_A Leucine-rich repeat pro 99.9 1.9E-24 6.5E-29 201.2 7.5 77 31-129 263-359 (876)
5 4fcg_A Uncharacterized protein 99.8 3.4E-22 1.2E-26 167.3 4.7 179 29-213 19-227 (328)
6 3e6j_A Variable lymphocyte rec 99.8 3.7E-18 1.3E-22 135.7 14.3 133 57-208 10-152 (229)
7 1w8a_A SLIT protein; signaling 99.7 2.4E-17 8.3E-22 127.5 11.6 127 65-209 7-144 (192)
8 2o6s_A Variable lymphocyte rec 99.7 6.4E-17 2.2E-21 126.3 14.1 143 64-208 5-165 (208)
9 3m19_A Variable lymphocyte rec 99.7 4.5E-17 1.5E-21 130.9 12.9 110 102-213 67-177 (251)
10 2v9t_B SLIT homolog 2 protein 99.7 7.9E-17 2.7E-21 127.3 13.7 129 65-211 10-148 (220)
11 2o6r_A Variable lymphocyte rec 99.7 6.8E-17 2.3E-21 123.1 12.1 126 65-208 6-141 (177)
12 2v70_A SLIT-2, SLIT homolog 2 99.7 9.4E-17 3.2E-21 126.9 13.1 102 104-207 67-169 (220)
13 2o6q_A Variable lymphocyte rec 99.7 1.4E-16 4.6E-21 129.4 13.1 96 114-211 81-177 (270)
14 3rgz_A Protein brassinosteroid 99.7 2.3E-17 7.8E-22 152.2 8.2 106 103-210 617-723 (768)
15 4g8a_A TOLL-like receptor 4; l 99.7 8.1E-16 2.8E-20 137.5 13.3 137 78-215 52-197 (635)
16 2wfh_A SLIT homolog 2 protein 99.7 1.4E-15 4.6E-20 117.9 12.5 124 65-207 9-142 (193)
17 4fcg_A Uncharacterized protein 99.7 5.5E-16 1.9E-20 129.5 10.9 110 103-216 192-302 (328)
18 2z81_A CD282 antigen, TOLL-lik 99.6 9.1E-16 3.1E-20 135.8 11.8 125 65-207 3-139 (549)
19 4b8c_D Glucose-repressible alc 99.6 8.7E-17 3E-21 147.6 4.9 171 34-212 129-337 (727)
20 2v70_A SLIT-2, SLIT homolog 2 99.6 2.3E-15 7.9E-20 118.8 11.8 133 65-215 10-153 (220)
21 3m19_A Variable lymphocyte rec 99.6 6.5E-15 2.2E-19 118.2 13.7 101 104-206 93-194 (251)
22 3v47_A TOLL-like receptor 5B a 99.6 2.5E-15 8.6E-20 130.0 11.3 148 64-213 6-176 (455)
23 3vq2_A TLR4, TOLL-like recepto 99.6 5.9E-15 2E-19 132.1 13.8 139 78-217 32-179 (606)
24 1ogq_A PGIP-2, polygalacturona 99.6 1.1E-15 3.8E-20 126.7 8.3 106 103-211 158-264 (313)
25 3g39_A Variable lymphocyte rec 99.6 9.2E-15 3.1E-19 110.9 12.1 100 104-208 19-119 (170)
26 2je0_A Acidic leucine-rich nuc 99.6 9.9E-16 3.4E-20 113.3 6.5 112 78-208 17-130 (149)
27 2z80_A TOLL-like receptor 2, v 99.6 8E-15 2.7E-19 123.2 12.0 151 58-213 22-196 (353)
28 3rfs_A Internalin B, repeat mo 99.6 1.7E-14 5.9E-19 117.1 13.6 103 104-208 95-198 (272)
29 1w8a_A SLIT protein; signaling 99.6 1.3E-14 4.3E-19 112.1 12.0 107 104-215 18-126 (192)
30 2ell_A Acidic leucine-rich nuc 99.6 3.2E-15 1.1E-19 112.8 7.8 112 78-208 24-137 (168)
31 2v9t_B SLIT homolog 2 protein 99.6 1.8E-14 6.3E-19 113.6 11.9 110 78-206 56-167 (220)
32 2o6s_A Variable lymphocyte rec 99.6 2.8E-14 9.4E-19 111.2 12.5 107 102-216 84-190 (208)
33 2z62_A TOLL-like receptor 4, v 99.6 3.3E-14 1.1E-18 115.4 13.3 138 79-217 29-175 (276)
34 2xot_A Amphoterin-induced prot 99.6 2E-14 6.8E-19 121.5 12.0 140 65-207 17-179 (361)
35 2o6q_A Variable lymphocyte rec 99.6 7.6E-14 2.6E-18 113.1 14.6 103 104-208 95-198 (270)
36 2r9u_A Variable lymphocyte rec 99.6 5.4E-14 1.8E-18 107.1 12.6 100 104-208 22-122 (174)
37 3rfs_A Internalin B, repeat mo 99.6 4.4E-14 1.5E-18 114.7 12.8 129 78-208 85-222 (272)
38 3vq2_A TLR4, TOLL-like recepto 99.5 2.4E-14 8.2E-19 128.1 11.7 144 64-216 5-154 (606)
39 4g8a_A TOLL-like receptor 4; l 99.5 2.4E-14 8.1E-19 128.0 11.0 112 102-215 60-173 (635)
40 1ozn_A Reticulon 4 receptor; N 99.5 8.6E-14 2.9E-18 113.5 13.3 109 102-212 64-174 (285)
41 2z62_A TOLL-like receptor 4, v 99.5 3.1E-14 1.1E-18 115.6 10.5 102 104-207 86-193 (276)
42 3e6j_A Variable lymphocyte rec 99.5 6E-14 2.1E-18 111.3 11.9 112 78-208 64-176 (229)
43 1dce_A Protein (RAB geranylger 99.5 1.9E-14 6.6E-19 128.5 10.1 109 79-210 442-552 (567)
44 3oja_B Anopheles plasmodium-re 99.5 2.2E-14 7.5E-19 128.7 10.5 105 103-209 84-189 (597)
45 2id5_A Lingo-1, leucine rich r 99.5 4.3E-14 1.5E-18 123.1 11.9 103 104-208 66-169 (477)
46 3v47_A TOLL-like receptor 5B a 99.5 4E-14 1.4E-18 122.4 11.6 105 102-208 307-412 (455)
47 3t6q_A CD180 antigen; protein- 99.5 6.1E-14 2.1E-18 125.5 12.9 109 104-213 67-175 (606)
48 3o6n_A APL1; leucine-rich repe 99.5 2E-14 7E-19 122.2 9.3 101 103-206 78-180 (390)
49 4eco_A Uncharacterized protein 99.5 5.2E-15 1.8E-19 133.9 5.3 101 110-214 239-352 (636)
50 1ziw_A TOLL-like receptor 3; i 99.5 6.8E-14 2.3E-18 126.9 12.6 130 78-210 25-164 (680)
51 1ozn_A Reticulon 4 receptor; N 99.5 1.1E-13 3.6E-18 112.9 12.3 103 104-208 115-218 (285)
52 2ifg_A High affinity nerve gro 99.5 7.4E-14 2.5E-18 116.9 11.6 97 105-206 20-118 (347)
53 2wfh_A SLIT homolog 2 protein 99.5 2E-13 7E-18 105.5 13.2 104 104-213 20-124 (193)
54 3zyj_A Leucine-rich repeat-con 99.5 1.1E-13 3.8E-18 119.7 12.9 99 104-204 98-198 (440)
55 2z66_A Variable lymphocyte rec 99.5 2.3E-14 8E-19 117.9 8.2 146 65-213 6-173 (306)
56 2z66_A Variable lymphocyte rec 99.5 5.3E-14 1.8E-18 115.7 10.0 108 103-211 135-243 (306)
57 3j0a_A TOLL-like receptor 5; m 99.5 6E-14 2.1E-18 130.6 11.4 146 66-214 14-171 (844)
58 1p9a_G Platelet glycoprotein I 99.5 2.3E-13 8E-18 111.7 13.4 106 104-213 87-193 (290)
59 3zyi_A Leucine-rich repeat-con 99.5 1.1E-13 3.8E-18 120.1 12.1 100 104-205 109-210 (452)
60 4ezg_A Putative uncharacterize 99.5 7.1E-14 2.4E-18 108.2 8.9 90 113-205 83-173 (197)
61 3oja_A Leucine-rich immune mol 99.5 8.2E-14 2.8E-18 122.3 10.0 102 104-210 130-232 (487)
62 1p9a_G Platelet glycoprotein I 99.5 2.8E-13 9.4E-18 111.2 12.5 103 104-211 65-168 (290)
63 2z63_A TOLL-like receptor 4, v 99.5 2.4E-13 8.1E-18 120.5 12.3 114 103-217 61-175 (570)
64 2xot_A Amphoterin-induced prot 99.5 1.7E-13 5.7E-18 115.8 9.9 100 104-205 49-150 (361)
65 4ezg_A Putative uncharacterize 99.5 1.7E-13 5.8E-18 106.0 9.0 99 103-205 97-195 (197)
66 3t6q_A CD180 antigen; protein- 99.5 1.6E-13 5.6E-18 122.7 10.1 117 78-211 33-150 (606)
67 2xwt_C Thyrotropin receptor; s 99.5 1.7E-13 5.7E-18 109.0 8.8 99 106-209 68-173 (239)
68 2ft3_A Biglycan; proteoglycan, 99.5 5.7E-13 2E-17 110.9 12.4 119 65-204 32-160 (332)
69 2o6r_A Variable lymphocyte rec 99.5 1.5E-12 5E-17 98.9 13.6 104 104-212 17-121 (177)
70 2z81_A CD282 antigen, TOLL-lik 99.5 1.1E-13 3.8E-18 122.3 8.3 119 78-214 50-171 (549)
71 2z63_A TOLL-like receptor 4, v 99.5 2.9E-13 9.8E-18 120.0 10.7 120 78-215 28-149 (570)
72 1xku_A Decorin; proteoglycan, 99.4 7.5E-13 2.6E-17 110.0 12.4 125 64-205 29-185 (330)
73 3oja_B Anopheles plasmodium-re 99.4 6.7E-13 2.3E-17 119.1 12.5 108 105-214 62-170 (597)
74 2z7x_B TOLL-like receptor 1, v 99.4 4.7E-13 1.6E-17 117.7 10.9 99 104-206 31-130 (520)
75 3j0a_A TOLL-like receptor 5; m 99.4 4E-13 1.4E-17 125.1 10.6 107 103-211 82-194 (844)
76 2z7x_B TOLL-like receptor 1, v 99.4 2.4E-13 8.3E-18 119.5 8.5 107 102-215 53-164 (520)
77 2id5_A Lingo-1, leucine rich r 99.4 5.9E-13 2E-17 116.0 10.7 108 104-213 42-150 (477)
78 3cvr_A Invasion plasmid antige 99.4 2.5E-13 8.5E-18 121.3 8.3 133 57-209 34-177 (571)
79 4ecn_A Leucine-rich repeat pro 99.4 1E-13 3.6E-18 129.2 6.0 96 109-208 480-589 (876)
80 3o6n_A APL1; leucine-rich repe 99.4 1.5E-12 5.1E-17 110.6 12.5 101 109-212 59-162 (390)
81 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 7.2E-13 2.4E-17 117.9 10.6 108 78-205 52-160 (562)
82 2ell_A Acidic leucine-rich nuc 99.4 5.4E-13 1.9E-17 100.4 7.8 108 78-205 49-161 (168)
83 3zyj_A Leucine-rich repeat-con 99.4 3.3E-12 1.1E-16 110.4 13.7 96 113-212 180-276 (440)
84 1wwl_A Monocyte differentiatio 99.4 2.2E-13 7.6E-18 112.7 6.0 90 118-208 149-245 (312)
85 2z80_A TOLL-like receptor 2, v 99.4 6.2E-13 2.1E-17 111.6 8.6 128 78-209 76-215 (353)
86 1ziw_A TOLL-like receptor 3; i 99.4 1.2E-12 4E-17 118.7 10.7 109 104-214 83-194 (680)
87 3zyi_A Leucine-rich repeat-con 99.4 5.1E-12 1.7E-16 109.5 13.7 96 113-212 191-287 (452)
88 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 2.6E-12 8.9E-17 114.3 11.9 112 81-215 34-146 (562)
89 1wwl_A Monocyte differentiatio 99.4 7.3E-13 2.5E-17 109.5 7.8 105 104-211 159-272 (312)
90 2je0_A Acidic leucine-rich nuc 99.4 4.4E-13 1.5E-17 98.9 4.9 103 78-200 42-149 (149)
91 3o53_A Protein LRIM1, AGAP0063 99.3 3.3E-12 1.1E-16 105.8 9.8 83 116-204 167-250 (317)
92 1a9n_A U2A', U2A'; complex (nu 99.3 1.8E-12 6.3E-17 98.4 7.4 108 78-209 19-130 (176)
93 3g39_A Variable lymphocyte rec 99.3 9.1E-12 3.1E-16 94.2 10.9 90 120-214 11-101 (170)
94 4b8c_D Glucose-repressible alc 99.3 2.3E-12 8E-17 118.2 8.6 101 110-216 216-317 (727)
95 1xku_A Decorin; proteoglycan, 99.3 9.7E-12 3.3E-16 103.3 11.4 91 118-211 192-283 (330)
96 1h6t_A Internalin B; cell adhe 99.3 1E-11 3.5E-16 101.8 11.3 85 114-205 108-192 (291)
97 2r9u_A Variable lymphocyte rec 99.3 1.5E-11 5.2E-16 93.4 10.9 90 120-214 14-104 (174)
98 4glp_A Monocyte differentiatio 99.3 2.8E-12 9.5E-17 105.9 7.1 131 78-214 145-296 (310)
99 2xwt_C Thyrotropin receptor; s 99.3 3.2E-12 1.1E-16 101.5 7.2 105 104-211 41-151 (239)
100 4glp_A Monocyte differentiatio 99.3 3.1E-12 1E-16 105.6 7.1 108 104-214 127-247 (310)
101 1xeu_A Internalin C; cellular 99.3 2E-11 6.7E-16 98.7 11.3 64 139-206 124-187 (263)
102 2ft3_A Biglycan; proteoglycan, 99.3 8.3E-12 2.8E-16 103.8 9.3 109 102-212 201-317 (332)
103 3o53_A Protein LRIM1, AGAP0063 99.3 4.3E-12 1.5E-16 105.1 7.2 115 78-213 120-235 (317)
104 3oja_A Leucine-rich immune mol 99.3 4.4E-12 1.5E-16 111.3 7.6 141 66-212 109-259 (487)
105 1a9n_A U2A', U2A'; complex (nu 99.3 4.1E-12 1.4E-16 96.4 5.5 103 79-204 43-153 (176)
106 1h6u_A Internalin H; cell adhe 99.3 4E-11 1.4E-15 99.0 11.6 96 104-208 95-190 (308)
107 1dce_A Protein (RAB geranylger 99.3 2.1E-11 7.2E-16 108.9 10.2 92 119-216 442-534 (567)
108 1h6t_A Internalin B; cell adhe 99.3 5.8E-11 2E-15 97.3 12.1 96 104-208 78-173 (291)
109 1h6u_A Internalin H; cell adhe 99.2 3.9E-11 1.3E-15 99.1 11.0 121 78-207 85-211 (308)
110 1m9s_A Internalin B; cell inva 99.2 4.1E-11 1.4E-15 107.8 11.3 119 78-205 65-189 (605)
111 1xeu_A Internalin C; cellular 99.2 6.2E-11 2.1E-15 95.8 11.1 93 104-206 73-165 (263)
112 1o6v_A Internalin A; bacterial 99.2 5.2E-11 1.8E-15 103.5 10.7 88 114-208 283-370 (466)
113 3cvr_A Invasion plasmid antige 99.2 1.5E-11 5.2E-16 109.8 6.9 89 117-216 159-255 (571)
114 2ast_B S-phase kinase-associat 99.2 4.6E-13 1.6E-17 111.3 -2.8 100 104-205 80-183 (336)
115 1m9s_A Internalin B; cell inva 99.2 5.7E-11 2E-15 106.9 10.6 120 78-206 87-212 (605)
116 1o6v_A Internalin A; bacterial 99.2 4.8E-11 1.6E-15 103.8 9.4 95 102-205 295-389 (466)
117 4fmz_A Internalin; leucine ric 99.2 8E-11 2.7E-15 98.1 10.2 97 104-208 231-328 (347)
118 3bz5_A Internalin-J, INLJ; leu 99.2 1.6E-10 5.5E-15 100.6 11.8 84 114-207 81-164 (457)
119 4fmz_A Internalin; leucine ric 99.2 1.1E-10 3.7E-15 97.3 10.1 101 104-213 209-309 (347)
120 2ifg_A High affinity nerve gro 99.2 7.8E-11 2.7E-15 98.4 9.3 87 121-211 11-100 (347)
121 1jl5_A Outer protein YOPM; leu 99.2 2.2E-10 7.6E-15 99.6 12.3 94 103-205 140-251 (454)
122 3g06_A SSPH2 (leucine-rich rep 99.2 1.8E-11 6.1E-16 110.5 5.4 137 57-213 13-162 (622)
123 3bz5_A Internalin-J, INLJ; leu 99.1 3.5E-10 1.2E-14 98.4 12.5 98 104-213 158-255 (457)
124 1ds9_A Outer arm dynein; leuci 99.1 1E-13 3.4E-18 107.4 -9.8 100 104-209 58-158 (198)
125 1ds9_A Outer arm dynein; leuci 99.1 9.7E-14 3.3E-18 107.5 -10.2 87 113-205 43-129 (198)
126 1jl5_A Outer protein YOPM; leu 99.1 5.6E-10 1.9E-14 97.1 11.9 83 118-210 131-213 (454)
127 4ay9_X Follicle-stimulating ho 99.1 1.7E-10 5.8E-15 96.8 8.4 98 66-180 9-117 (350)
128 2ast_B S-phase kinase-associat 99.1 5.4E-12 1.9E-16 104.7 -0.8 49 105-153 129-178 (336)
129 3g06_A SSPH2 (leucine-rich rep 99.0 3.4E-10 1.2E-14 102.1 8.0 87 118-215 221-308 (622)
130 2ca6_A RAN GTPase-activating p 99.0 3E-11 1E-15 102.5 0.8 103 104-208 197-320 (386)
131 3goz_A Leucine-rich repeat-con 98.9 1.4E-10 4.8E-15 97.7 1.4 111 79-207 23-154 (362)
132 2ca6_A RAN GTPase-activating p 98.9 4.1E-11 1.4E-15 101.6 -2.1 89 118-206 159-259 (386)
133 4ay9_X Follicle-stimulating ho 98.9 2.6E-09 9E-14 89.5 7.8 101 104-210 19-123 (350)
134 3goz_A Leucine-rich repeat-con 98.9 1.8E-10 6.2E-15 97.0 0.0 116 79-211 52-187 (362)
135 3rw6_A Nuclear RNA export fact 98.9 6.3E-11 2.1E-15 96.0 -3.8 68 140-208 167-237 (267)
136 1z7x_W Ribonuclease inhibitor; 98.7 1.8E-10 6.1E-15 99.5 -5.2 67 139-205 337-412 (461)
137 1z7x_W Ribonuclease inhibitor; 98.7 7.3E-10 2.5E-14 95.6 -2.6 111 78-205 256-384 (461)
138 3un9_A NLR family member X1; l 98.5 2E-08 7E-13 85.0 1.3 91 116-206 153-254 (372)
139 3ogk_B Coronatine-insensitive 98.4 1.6E-08 5.4E-13 89.9 -1.7 96 110-206 428-528 (592)
140 3rw6_A Nuclear RNA export fact 98.4 2.2E-07 7.4E-12 75.2 4.4 80 115-197 167-257 (267)
141 3un9_A NLR family member X1; l 98.4 3.5E-08 1.2E-12 83.6 -0.6 110 79-205 102-225 (372)
142 1io0_A Tropomodulin; LRR prote 98.2 1.9E-07 6.6E-12 71.2 0.4 111 78-204 36-164 (185)
143 3sb4_A Hypothetical leucine ri 98.2 4.9E-06 1.7E-10 68.8 8.1 86 117-208 225-314 (329)
144 2p1m_B Transport inhibitor res 98.1 1.6E-07 5.6E-12 83.3 -2.3 91 113-205 427-520 (594)
145 3ogk_B Coronatine-insensitive 98.1 1.8E-06 6.1E-11 76.6 4.1 91 111-205 213-307 (592)
146 3sb4_A Hypothetical leucine ri 98.0 1E-05 3.4E-10 66.9 7.6 89 104-198 236-328 (329)
147 2p1m_B Transport inhibitor res 98.0 1.4E-07 4.8E-12 83.7 -4.3 98 104-201 115-221 (594)
148 1io0_A Tropomodulin; LRR prote 98.0 1.7E-06 6E-11 65.9 1.8 99 108-206 26-138 (185)
149 3e4g_A ATP synthase subunit S, 97.9 2E-06 7E-11 65.0 1.2 86 118-204 61-153 (176)
150 4fdw_A Leucine rich hypothetic 97.3 0.0008 2.7E-08 57.3 8.8 97 105-206 258-360 (401)
151 3e4g_A ATP synthase subunit S, 97.3 9E-05 3.1E-09 56.0 2.3 84 78-178 61-150 (176)
152 2ra8_A Uncharacterized protein 97.3 3.5E-05 1.2E-09 64.9 -0.2 90 116-205 217-321 (362)
153 3rfe_A Platelet glycoprotein I 97.1 0.0011 3.7E-08 47.4 6.4 35 119-155 32-67 (130)
154 4fdw_A Leucine rich hypothetic 97.0 0.0034 1.2E-07 53.3 9.8 45 105-151 167-211 (401)
155 3rfe_A Platelet glycoprotein I 96.8 0.0032 1.1E-07 44.9 6.7 57 121-180 11-68 (130)
156 2ra8_A Uncharacterized protein 96.8 0.00029 9.9E-09 59.3 0.8 87 117-205 192-293 (362)
157 1pgv_A TMD-1, tropomodulin TMD 96.1 0.0015 5.2E-08 50.1 1.2 91 112-202 64-168 (197)
158 4gt6_A Cell surface protein; l 95.8 0.049 1.7E-06 45.7 9.4 84 112-202 282-368 (394)
159 4h09_A Hypothetical leucine ri 95.5 0.042 1.4E-06 45.7 7.7 82 112-199 257-341 (379)
160 1pgv_A TMD-1, tropomodulin TMD 95.2 0.011 3.8E-07 45.2 2.8 92 110-201 33-136 (197)
161 4gt6_A Cell surface protein; l 95.1 0.041 1.4E-06 46.1 6.6 87 111-204 304-391 (394)
162 4fs7_A Uncharacterized protein 94.9 0.065 2.2E-06 44.9 7.2 82 113-201 292-376 (394)
163 4fs7_A Uncharacterized protein 94.1 0.072 2.5E-06 44.6 5.7 79 111-196 313-393 (394)
164 4h09_A Hypothetical leucine ri 93.5 0.34 1.1E-05 40.1 8.7 84 112-201 234-320 (379)
165 2lz0_A Uncharacterized protein 29.3 1.2E+02 0.004 19.7 5.1 40 137-177 14-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=2.1e-28 Score=203.70 Aligned_cols=176 Identities=25% Similarity=0.453 Sum_probs=106.6
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCccc--ccceEEcCCC--CcEEEEEcCCCCCC----CC-----CCcccc
Q 027602 33 GCLESEREVLLRFKQDLQDPSNRLASWIGDGDCCL--WAGVICDNVT--GHILELNLRNPFNY----YV-----QPDQFE 99 (221)
Q Consensus 33 ~~~~~~~~~L~~~~~~l~~~~~~l~~W~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~----l~-----~~~~~~ 99 (221)
.|.++|++||++||+++.+|. .+.+|..+.+||. |.||+|+... ++|+.+++++..-. +. ...+..
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 588999999999999998775 6889988889998 9999998644 79999999985200 00 000000
Q ss_pred CC-C-CCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCC
Q 027602 100 AN-P-RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRN 177 (221)
Q Consensus 100 ~~-~-~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N 177 (221)
+. + .|++.+.+|..+.++++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 11 1 144555555555555555555555555554 45555555555555555555555555555555555555555555
Q ss_pred CCCCcCCC-cCCCCC-CCCEEEcccCCCCCCCCccc
Q 027602 178 FLYVVNFG-WLSGLS-FLEHLDFSTTRKMGFTDTKL 211 (221)
Q Consensus 178 ~l~~~~~p-~~~~l~-~L~~L~l~~N~l~g~ip~~~ 211 (221)
+++ +.+| .+..++ +|++|++++|+++|.+|..+
T Consensus 160 ~l~-~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~ 194 (313)
T 1ogq_A 160 RIS-GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194 (313)
T ss_dssp CCE-EECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred ccc-CcCCHHHhhhhhcCcEEECcCCeeeccCChHH
Confidence 554 3344 444444 55555555555555555444
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=3.7e-25 Score=204.19 Aligned_cols=169 Identities=24% Similarity=0.252 Sum_probs=134.3
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCcccccceEEcCCCCcEEEEEcCCCC--C----------CCCCCcccc
Q 027602 32 VGCLESEREVLLRFKQDLQDPSNRLASWIGDGDCCLWAGVICDNVTGHILELNLRNPF--N----------YYVQPDQFE 99 (221)
Q Consensus 32 ~~~~~~~~~~L~~~~~~l~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~--~----------~l~~~~~~~ 99 (221)
....++|++||++||+.+.||. .+++|..+.+||.|.||+|+ .++|++++|++.. + .+..+++..
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence 3446889999999999999887 89999977899999999998 5899999999863 1 111111111
Q ss_pred CCCCCCCccc--cCccccCCCCCcEEeCccCCCCCCcccc--cccCCCCCcEEEccCCcCCCCCcccc-CCCCCCCEEeC
Q 027602 100 ANPRSMLVGK--VNPSLLDLEHLSYLDLSFNDFQGVQIPR--FIGSMGNQKYLNLLGSQFGGVIPHQL-GNLSSLRYLDL 174 (221)
Q Consensus 100 ~~~~n~l~g~--~p~~l~~l~~L~~L~L~~n~l~g~~ip~--~~~~l~~L~~L~l~~N~l~g~~p~~l-~~l~~L~~L~l 174 (221)
+.+.+. +|+.+..+++|++|++++|.++| .+|. .++.+++|++|++++|.+++.+|..+ .++++|++|++
T Consensus 84 ----~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 84 ----LSNSHINGSVSGFKCSASLTSLDLSRNSLSG-PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp ----CTTSCEEECCCCCCCCTTCCEEECCSSEEEE-EGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred ----CcCCCcCCCchhhccCCCCCEEECCCCcCCC-cCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEEC
Confidence 233333 34778888999999999999988 7887 88889999999999999888888766 78889999999
Q ss_pred cCCCCCCcCCC-c---CCCCCCCCEEEcccCCCCCCCCc
Q 027602 175 SRNFLYVVNFG-W---LSGLSFLEHLDFSTTRKMGFTDT 209 (221)
Q Consensus 175 ~~N~l~~~~~p-~---~~~l~~L~~L~l~~N~l~g~ip~ 209 (221)
++|.++ +..+ . +.++++|++|++++|.++|.+|.
T Consensus 159 s~n~l~-~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 196 (768)
T 3rgz_A 159 SANSIS-GANVVGWVLSDGCGELKHLAISGNKISGDVDV 196 (768)
T ss_dssp CSSCCE-EETHHHHHHTTCCTTCCEEECCSSEEESCCBC
T ss_pred CCCccC-CcCChhhhhhccCCCCCEEECCCCcccccCCc
Confidence 999986 5555 3 67888999999999999888774
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=7.1e-25 Score=198.50 Aligned_cols=56 Identities=18% Similarity=0.244 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCC--------CCCCCCCCCcccc---cceEEcCCCCcEEEEEcCCC
Q 027602 32 VGCLESEREVLLRFKQDLQDPSNR--------LASWIGDGDCCLW---AGVICDNVTGHILELNLRNP 88 (221)
Q Consensus 32 ~~~~~~~~~~L~~~~~~l~~~~~~--------l~~W~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~ 88 (221)
.+....|+.||.++|+++.++.+. ..+|+.+.++|.| .||+|+. .+||++|+|++.
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~ 91 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGF 91 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTTS
T ss_pred hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecCc
Confidence 334457999999999999765433 2379988999999 9999987 489999999985
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=1.9e-24 Score=201.20 Aligned_cols=77 Identities=21% Similarity=0.296 Sum_probs=56.5
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCCCCCCCCCCC-----Cc--ccc------------cceEEcCCCCcEEEEEcCCCCCC
Q 027602 31 HVGCLESEREVLLRFKQDLQDPSNRLASWIGDG-----DC--CLW------------AGVICDNVTGHILELNLRNPFNY 91 (221)
Q Consensus 31 ~~~~~~~~~~~L~~~~~~l~~~~~~l~~W~~~~-----~~--c~w------------~gv~c~~~~~~v~~l~l~~~~~~ 91 (221)
..+...+|+.||++||+++.+| +|+.+. ++ |.| .||+|+. .+||++|+|++.
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~--- 333 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF--- 333 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT---
T ss_pred ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC---
Confidence 4445678999999999999776 565433 55 999 9999987 689999999995
Q ss_pred CCCCccccCCCCCCCccccCccccCCCCCcEEeC-ccCC
Q 027602 92 YVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDL-SFND 129 (221)
Q Consensus 92 l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L-~~n~ 129 (221)
++.|.+|+++++|++|+.|+| ++|.
T Consensus 334 -------------~L~G~ip~~l~~L~~L~~LdLss~N~ 359 (876)
T 4ecn_A 334 -------------GAKGRVPDAIGQLTELKVLSFGTHSE 359 (876)
T ss_dssp -------------CCEEEECGGGGGCTTCCEEESCCTTH
T ss_pred -------------CCCCcCchHHhccccceEeeeccccc
Confidence 555555555555555555555 4443
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=3.4e-22 Score=167.25 Aligned_cols=179 Identities=15% Similarity=0.183 Sum_probs=134.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhCC-CCCCCCCCC----CCCCCcccccceEEcC--------CCCcEEEEEcCCCC-CCCC-
Q 027602 29 SYHVGCLESEREVLLRFKQDLQ-DPSNRLASW----IGDGDCCLWAGVICDN--------VTGHILELNLRNPF-NYYV- 93 (221)
Q Consensus 29 ~~~~~~~~~~~~~L~~~~~~l~-~~~~~l~~W----~~~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~-~~l~- 93 (221)
+.......+|++||++||..+. ++.+....| ....++|.|.|+.|.. ...+|+.++++++. ..++
T Consensus 19 ~~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~ 98 (328)
T 4fcg_A 19 FQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPD 98 (328)
T ss_dssp CC--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCCS
T ss_pred eeccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhcCh
Confidence 3445566788999999999884 776677889 4557899999999952 23689999998864 1110
Q ss_pred ----CCccccCC-CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCC---
Q 027602 94 ----QPDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGN--- 165 (221)
Q Consensus 94 ----~~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~--- 165 (221)
...+..+. +.|.+. .+|..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 99 ~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~ 175 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDA 175 (328)
T ss_dssp CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-
T ss_pred hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccc
Confidence 11111111 346777 78888888899999999999888 67888888899999999988888888877654
Q ss_pred ------CCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602 166 ------LSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVS 213 (221)
Q Consensus 166 ------l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 213 (221)
+++|++|++++|.++ .+| .+..+++|++|++++|++++ +|..+..
T Consensus 176 ~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~ 227 (328)
T 4fcg_A 176 SGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH 227 (328)
T ss_dssp CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG
T ss_pred hhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc
Confidence 888999999999885 556 77888999999999999986 5554543
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=3.7e-18 Score=135.73 Aligned_cols=133 Identities=17% Similarity=0.126 Sum_probs=75.0
Q ss_pred CCCCCCCCcccccceEEcCCC---------CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCcc
Q 027602 57 ASWIGDGDCCLWAGVICDNVT---------GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSF 127 (221)
Q Consensus 57 ~~W~~~~~~c~w~gv~c~~~~---------~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~ 127 (221)
..|......|.|++|.|.... ..++.+++++ |.+.+..|..+.++++|++|++++
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~----------------n~i~~~~~~~~~~l~~L~~L~L~~ 73 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHD----------------NQITKLEPGVFDSLINLKELYLGS 73 (229)
T ss_dssp -CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCS----------------SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred hccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCC----------------CccCccCHHHhhCccCCcEEECCC
Confidence 445555789999999997521 3466777776 455555555555555555555555
Q ss_pred CCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCC
Q 027602 128 NDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGF 206 (221)
Q Consensus 128 n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ 206 (221)
|.++. ..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+| .+..+++|++|++++|++++.
T Consensus 74 N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 74 NQLGA-LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp SCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred CCCCC-cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc--ccCcccccCCCCCEEECCCCcCCcc
Confidence 55552 22233455555555555555555433334455555555555555553 333 444555555555555555544
Q ss_pred CC
Q 027602 207 TD 208 (221)
Q Consensus 207 ip 208 (221)
.+
T Consensus 151 ~~ 152 (229)
T 3e6j_A 151 PH 152 (229)
T ss_dssp CT
T ss_pred CH
Confidence 33
No 7
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=2.4e-17 Score=127.53 Aligned_cols=127 Identities=20% Similarity=0.173 Sum_probs=107.0
Q ss_pred cccccceEEcCCC---------CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCc-cccCCCCCcEEeCccCCCCCCc
Q 027602 65 CCLWAGVICDNVT---------GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNP-SLLDLEHLSYLDLSFNDFQGVQ 134 (221)
Q Consensus 65 ~c~w~gv~c~~~~---------~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~-~l~~l~~L~~L~L~~n~l~g~~ 134 (221)
.|.|..+.|.... ..++.+++++ |.+.+..+. .+..+++|++|++++|.+++ .
T Consensus 7 ~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~----------------n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~ 69 (192)
T 1w8a_A 7 HCEGTTVDCTGRGLKEIPRDIPLHTTELLLND----------------NELGRISSDGLFGRLPHLVKLELKRNQLTG-I 69 (192)
T ss_dssp EEETTEEECTTSCCSSCCSCCCTTCSEEECCS----------------CCCCSBCCSCSGGGCTTCCEEECCSSCCCC-B
T ss_pred EECCCEEEcCCCCcCcCccCCCCCCCEEECCC----------------CcCCccCCccccccCCCCCEEECCCCCCCC-c
Confidence 4788888886421 2455556555 678766664 48899999999999999998 7
Q ss_pred ccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCc
Q 027602 135 IPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDT 209 (221)
Q Consensus 135 ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~ 209 (221)
.|..+..+++|++|++++|++++..|..+.++++|++|++++|+++ +.+| .+..+++|++|++++|.+++..+.
T Consensus 70 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 70 EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC-eeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 7889999999999999999999888888999999999999999997 5555 788899999999999999998763
No 8
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.73 E-value=6.4e-17 Score=126.30 Aligned_cols=143 Identities=19% Similarity=0.125 Sum_probs=82.4
Q ss_pred CcccccceEEcCCC---------CcEEEEEcCCCC-CC-----C-CCCccccCC-CCCCCccccCccccCCCCCcEEeCc
Q 027602 64 DCCLWAGVICDNVT---------GHILELNLRNPF-NY-----Y-VQPDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLS 126 (221)
Q Consensus 64 ~~c~w~gv~c~~~~---------~~v~~l~l~~~~-~~-----l-~~~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~ 126 (221)
-.|.|.++.|.... .+++.++++++. .. + ....+..+. ..|.+.+..+..+.++++|++|+++
T Consensus 5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 35789999997521 357788888753 00 0 001111111 3355554444445666666666666
Q ss_pred cCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCC
Q 027602 127 FNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMG 205 (221)
Q Consensus 127 ~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g 205 (221)
+|.+++ ..+..+..+++|++|++++|++++..+..+..+++|++|++++|.++ +..+ .+..+++|++|++++|.+.+
T Consensus 85 ~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 85 TNQLQS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCcCCc-cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCeec
Confidence 666664 33334566666666666666666544444566666666666666664 2223 35556666677777766666
Q ss_pred CCC
Q 027602 206 FTD 208 (221)
Q Consensus 206 ~ip 208 (221)
..|
T Consensus 163 ~~~ 165 (208)
T 2o6s_A 163 TCP 165 (208)
T ss_dssp CTT
T ss_pred CCC
Confidence 655
No 9
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=4.5e-17 Score=130.89 Aligned_cols=110 Identities=20% Similarity=0.151 Sum_probs=77.9
Q ss_pred CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602 102 PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV 181 (221)
Q Consensus 102 ~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~ 181 (221)
+.|.+.+..+..+.++++|++|++++|.+++ ..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 67 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~- 144 (251)
T 3m19_A 67 DYNQLQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ- 144 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred CCCcCCccCHhHhccCCcCCEEECCCCcccc-cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-
Confidence 3466666666667777777777777777775 44455677778888888888777554555677788888888888875
Q ss_pred cCCC-cCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602 182 VNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVS 213 (221)
Q Consensus 182 ~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 213 (221)
...+ .+..+++|++|++++|++++..|..+..
T Consensus 145 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 177 (251)
T 3m19_A 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhC
Confidence 3333 5677888888888888888766655543
No 10
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=7.9e-17 Score=127.27 Aligned_cols=129 Identities=19% Similarity=0.167 Sum_probs=72.9
Q ss_pred cccccceEEcCCC---------CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcc
Q 027602 65 CCLWAGVICDNVT---------GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQI 135 (221)
Q Consensus 65 ~c~w~gv~c~~~~---------~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~i 135 (221)
.|.|..+.|.... ..++.|++++ |.+.+..+..+..+++|++|++++|.+++ ..
T Consensus 10 ~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~----------------n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-~~ 72 (220)
T 2v9t_B 10 TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQ----------------NTIKVIPPGAFSPYKKLRRIDLSNNQISE-LA 72 (220)
T ss_dssp EEETTEEECTTSCCSSCCSSCCTTCCEEECCS----------------SCCCEECTTSSTTCTTCCEEECCSSCCCE-EC
T ss_pred EECCCEEEcCCCCcCcCCCccCcCCCEEECCC----------------CcCCCcCHhHhhCCCCCCEEECCCCcCCC-cC
Confidence 4688889997421 3567777776 35554444455555666666666666654 34
Q ss_pred cccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCccc
Q 027602 136 PRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDTKL 211 (221)
Q Consensus 136 p~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~ 211 (221)
|..|..+++|++|++++|.++...+..+.++++|++|++++|+++ ...+ .+..+++|++|++++|++++..+..+
T Consensus 73 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 73 PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC-EeCHHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence 555555666666666666655332233455556666666666654 2222 45555566666666666655544333
No 11
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=6.8e-17 Score=123.10 Aligned_cols=126 Identities=18% Similarity=0.163 Sum_probs=103.5
Q ss_pred cccccceEEcCCC---------CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcc
Q 027602 65 CCLWAGVICDNVT---------GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQI 135 (221)
Q Consensus 65 ~c~w~gv~c~~~~---------~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~i 135 (221)
.|.|.++.|.... ..++.+++++ |.+.+..+..+..+++|++|++++|.+++ ..
T Consensus 6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~----------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~ 68 (177)
T 2o6r_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELES----------------NKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LP 68 (177)
T ss_dssp EEETTEEECCSSCCSSCCTTCCTTCSEEECCS----------------SCCCCCCTTTTTTCTTCSEEECCSSCCCC-CC
T ss_pred EeCCCEEEecCCCCccCCCCCCCCCcEEEeCC----------------CcccEeCHHHhcCcccccEEECCCCcceE-eC
Confidence 4789999997521 2455566665 68887666678999999999999999996 44
Q ss_pred cccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602 136 PRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTD 208 (221)
Q Consensus 136 p~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip 208 (221)
+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ +..+ .+..+++|++|++++|.+++..|
T Consensus 69 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 69 DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 455789999999999999999766666889999999999999996 4344 46779999999999999999876
No 12
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=9.4e-17 Score=126.85 Aligned_cols=102 Identities=16% Similarity=0.079 Sum_probs=50.0
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+.+..+..|.++++|++|++++|.+++ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|.++ +.
T Consensus 67 N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~ 144 (220)
T 2v70_A 67 NKITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TV 144 (220)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCC-CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC-CB
T ss_pred CcCCEECHHHhCCCCCCCEEECCCCccCc-cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC-EE
Confidence 44444444445555555555555555553 33333445555555555555555444444555555555555555554 22
Q ss_pred CC-cCCCCCCCCEEEcccCCCCCCC
Q 027602 184 FG-WLSGLSFLEHLDFSTTRKMGFT 207 (221)
Q Consensus 184 ~p-~~~~l~~L~~L~l~~N~l~g~i 207 (221)
.| .+..+++|++|++++|.+++..
T Consensus 145 ~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 145 APGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CHHHhcCCCCCCEEEecCcCCcCCC
Confidence 22 4444555555555555555443
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=1.4e-16 Score=129.42 Aligned_cols=96 Identities=21% Similarity=0.202 Sum_probs=53.7
Q ss_pred ccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCC
Q 027602 114 LLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSF 192 (221)
Q Consensus 114 l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~ 192 (221)
+.++++|++|++++|.+++ ..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ ...+ .+..+++
T Consensus 81 ~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~ 158 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTS 158 (270)
T ss_dssp TSSCTTCCEEECCSSCCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred hcCCCCCCEEECCCCcCCc-CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcc
Confidence 4455555555555555553 22333455566666666666665544445566666666666666664 2222 3556666
Q ss_pred CCEEEcccCCCCCCCCccc
Q 027602 193 LEHLDFSTTRKMGFTDTKL 211 (221)
Q Consensus 193 L~~L~l~~N~l~g~ip~~~ 211 (221)
|++|++++|++++..+..+
T Consensus 159 L~~L~L~~n~l~~~~~~~~ 177 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPEGAF 177 (270)
T ss_dssp CCEEECCSSCCSCCCTTTT
T ss_pred cceeEecCCcCcEeChhHh
Confidence 6666666666666544333
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.69 E-value=2.3e-17 Score=152.21 Aligned_cols=106 Identities=32% Similarity=0.460 Sum_probs=101.1
Q ss_pred CCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCc
Q 027602 103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVV 182 (221)
Q Consensus 103 ~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~ 182 (221)
.|.+.|.+|..+.++++|+.||+++|+++| .+|..++.+++|+.|++++|+++|.+|..++++++|++||+++|+++ +
T Consensus 617 ~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~-g 694 (768)
T 3rgz_A 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSG-YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD-G 694 (768)
T ss_dssp SCEEEEECCCSCSSSBCCCEEECCSSCCBS-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE-E
T ss_pred cceecccCchhhhccccccEEECcCCcccc-cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc-C
Confidence 367889999999999999999999999999 99999999999999999999999999999999999999999999998 7
Q ss_pred CCC-cCCCCCCCCEEEcccCCCCCCCCcc
Q 027602 183 NFG-WLSGLSFLEHLDFSTTRKMGFTDTK 210 (221)
Q Consensus 183 ~~p-~~~~l~~L~~L~l~~N~l~g~ip~~ 210 (221)
.+| .+..+++|++|++++|+++|.||..
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred cCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 888 7889999999999999999999965
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.66 E-value=8.1e-16 Score=137.53 Aligned_cols=137 Identities=20% Similarity=0.238 Sum_probs=75.4
Q ss_pred CcEEEEEcCCCC------CCC-CCCccccCC-CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEE
Q 027602 78 GHILELNLRNPF------NYY-VQPDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLN 149 (221)
Q Consensus 78 ~~v~~l~l~~~~------~~l-~~~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~ 149 (221)
..++.|+|+++. ..+ ....+..++ +.|.+.+..|..|.++++|++|+|++|++++ ..+..|..+++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCCCEEE
Confidence 367889988853 000 011111111 3355555555556666666666666666663 2223456666666666
Q ss_pred ccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCccccccc
Q 027602 150 LLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVSVI 215 (221)
Q Consensus 150 l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~ 215 (221)
+++|++++..+..++++++|++|++++|.++...+| .+..+++|++|++++|++++..|..+..+.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 666666644444566666666666666666533444 445566666666666666666555554443
No 16
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=1.4e-15 Score=117.88 Aligned_cols=124 Identities=27% Similarity=0.273 Sum_probs=101.6
Q ss_pred cccccceEEcCCC---------CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcc
Q 027602 65 CCLWAGVICDNVT---------GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQI 135 (221)
Q Consensus 65 ~c~w~gv~c~~~~---------~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~i 135 (221)
.|.|..+.|.... ..++.|++++ |.+. .+|..+.++++|++|++++|.+++ ..
T Consensus 9 ~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~----------------n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~-i~ 70 (193)
T 2wfh_A 9 TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDG----------------NQFT-LVPKELSNYKHLTLIDLSNNRIST-LS 70 (193)
T ss_dssp EEETTEEECTTSCCSSCCSCCCTTCCEEECCS----------------SCCC-SCCGGGGGCTTCCEEECCSSCCCC-CC
T ss_pred EeCCCEEEcCCCCCCcCCCCCCCCCCEEECCC----------------CcCc-hhHHHhhcccCCCEEECCCCcCCE-eC
Confidence 4567777886421 2455555555 5776 778899999999999999999997 56
Q ss_pred cccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCC
Q 027602 136 PRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFT 207 (221)
Q Consensus 136 p~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~i 207 (221)
+..|..+++|++|++++|++++..|..+.++++|++|++++|.++ ...+ .+..+++|++|++++|.+...-
T Consensus 71 ~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 71 NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred HhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCeecCC
Confidence 677999999999999999999877788999999999999999997 3333 5788999999999999997653
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.65 E-value=5.5e-16 Score=129.51 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=99.3
Q ss_pred CCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCc
Q 027602 103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVV 182 (221)
Q Consensus 103 ~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~ 182 (221)
.|.+. .+|..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|++. +
T Consensus 192 ~n~l~-~lp~~l~~l~~L~~L~L~~N~l~--~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~-~ 267 (328)
T 4fcg_A 192 WTGIR-SLPASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL-L 267 (328)
T ss_dssp EECCC-CCCGGGGGCTTCCEEEEESSCCC--CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC-C
T ss_pred CCCcC-cchHhhcCCCCCCEEEccCCCCC--cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch-h
Confidence 36676 88888999999999999999999 57888999999999999999999999999999999999999999987 6
Q ss_pred CCC-cCCCCCCCCEEEcccCCCCCCCCcccccccc
Q 027602 183 NFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVSVIT 216 (221)
Q Consensus 183 ~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~ 216 (221)
.+| .+..+++|++|++++|++.|.+|..+..+.+
T Consensus 268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 777 7888999999999999999999988866544
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.64 E-value=9.1e-16 Score=135.76 Aligned_cols=125 Identities=22% Similarity=0.259 Sum_probs=61.1
Q ss_pred cccccceEEcCCC-----------CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCC
Q 027602 65 CCLWAGVICDNVT-----------GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGV 133 (221)
Q Consensus 65 ~c~w~gv~c~~~~-----------~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~ 133 (221)
.|.|.|+ |+... .+++.++++++ .+.+..|..+.++++|++|++++|.+++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n----------------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~- 64 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFN----------------KITYIGHGDLRACANLQVLILKSSRINT- 64 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSS----------------CCCEECSSTTSSCTTCCEEECTTSCCCE-
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCC----------------ccCccChhhhhcCCcccEEECCCCCcCc-
Confidence 5999998 87422 35777888774 4444444444444444444444444443
Q ss_pred cccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCC
Q 027602 134 QIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFT 207 (221)
Q Consensus 134 ~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~i 207 (221)
..|..+..+++|++|++++|++++..|..++++++|++|++++|.+++..+| .+.++++|++|++++|.+.+.+
T Consensus 65 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 139 (549)
T 2z81_A 65 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139 (549)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccccc
Confidence 3333444444444444444444443333344444444444444444321222 3344444444444444433333
No 19
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=8.7e-17 Score=147.60 Aligned_cols=171 Identities=15% Similarity=0.192 Sum_probs=103.7
Q ss_pred CCHHHHHHHHHHHhhCCCC-CCCCCCCCCC-CCcccccceEEcCCCCcEEEEEcCCCC------CCCCC-----------
Q 027602 34 CLESEREVLLRFKQDLQDP-SNRLASWIGD-GDCCLWAGVICDNVTGHILELNLRNPF------NYYVQ----------- 94 (221)
Q Consensus 34 ~~~~~~~~L~~~~~~l~~~-~~~l~~W~~~-~~~c~w~gv~c~~~~~~v~~l~l~~~~------~~l~~----------- 94 (221)
..+.+++++.+++.+.... ......|... ...+.|.++.+.. +++++++|.+.. ..+..
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~ 206 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEANQALLQHKKLSQYSIDED 206 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcchhhHhhcCccCcccccCc
Confidence 4456678899998876422 2233456443 5567888887765 567777664432 00000
Q ss_pred -----------------CccccCC-CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCC
Q 027602 95 -----------------PDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG 156 (221)
Q Consensus 95 -----------------~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~ 156 (221)
..+..+. +.|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++
T Consensus 207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS
T ss_pred cccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC
Confidence 0011111 335555 77878888999999999999998 78988999999999999999998
Q ss_pred CCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCcccc
Q 027602 157 GVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLV 212 (221)
Q Consensus 157 g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~ 212 (221)
.+|..++++++|++|+|++|.++ .+| .+..+++|++|+|++|.|+|.+|..+.
T Consensus 284 -~lp~~~~~l~~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 284 -SLPAELGSCFQLKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp -SCCSSGGGGTTCSEEECCSSCCC--CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred -ccChhhcCCCCCCEEECCCCCCC--ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 78999999999999999999985 566 788899999999999999998886653
No 20
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.63 E-value=2.3e-15 Score=118.83 Aligned_cols=133 Identities=18% Similarity=0.131 Sum_probs=110.4
Q ss_pred cccccceEEcCCC---------CcEEEEEcCCCCCCCCCCccccCCCCCCCccccC-ccccCCCCCcEEeCccCCCCCCc
Q 027602 65 CCLWAGVICDNVT---------GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVN-PSLLDLEHLSYLDLSFNDFQGVQ 134 (221)
Q Consensus 65 ~c~w~gv~c~~~~---------~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p-~~l~~l~~L~~L~L~~n~l~g~~ 134 (221)
.|.|..+.|.+.. ..++.|++++ |.+.+..+ ..+..+++|++|++++|.+++ .
T Consensus 10 ~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~----------------N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~-i 72 (220)
T 2v70_A 10 RCEGTTVDCSNQKLNKIPEHIPQYTAELRLNN----------------NEFTVLEATGIFKKLPQLRKINFSNNKITD-I 72 (220)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCS----------------SCCCEECCCCCGGGCTTCCEEECCSSCCCE-E
T ss_pred EECCCEeEeCCCCcccCccCCCCCCCEEEcCC----------------CcCCccCchhhhccCCCCCEEECCCCcCCE-E
Confidence 4788889986421 2345666665 68888765 457899999999999999996 5
Q ss_pred ccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602 135 IPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVS 213 (221)
Q Consensus 135 ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 213 (221)
.+..+..+++|++|++++|.+++..|..+.++++|++|++++|+++ +..| .+..+++|++|++++|++++..|..+..
T Consensus 73 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 151 (220)
T 2v70_A 73 EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC-CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred CHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC-eECHhHcCCCccCCEEECCCCcCCEECHHHhcC
Confidence 5568999999999999999999877778999999999999999997 4445 7888999999999999999998877765
Q ss_pred cc
Q 027602 214 VI 215 (221)
Q Consensus 214 ~~ 215 (221)
+.
T Consensus 152 l~ 153 (220)
T 2v70_A 152 LH 153 (220)
T ss_dssp CT
T ss_pred CC
Confidence 44
No 21
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=6.5e-15 Score=118.20 Aligned_cols=101 Identities=19% Similarity=0.103 Sum_probs=52.4
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+.+..+..+..+++|++|++++|.+++ ..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ ..
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~ 170 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SV 170 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCC-cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-cc
Confidence 44444444445555555555555555553 22233455555555555555555433334555555555555555554 22
Q ss_pred CC-cCCCCCCCCEEEcccCCCCCC
Q 027602 184 FG-WLSGLSFLEHLDFSTTRKMGF 206 (221)
Q Consensus 184 ~p-~~~~l~~L~~L~l~~N~l~g~ 206 (221)
.+ .+..+++|++|++++|++++.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 22 444555555555555555554
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.61 E-value=2.5e-15 Score=129.97 Aligned_cols=148 Identities=18% Similarity=0.197 Sum_probs=89.2
Q ss_pred Ccccccc--eEEcCCC--------CcEEEEEcCCCC-C-----CC-CCCccccCC-CCCCCccccC-ccccCCCCCcEEe
Q 027602 64 DCCLWAG--VICDNVT--------GHILELNLRNPF-N-----YY-VQPDQFEAN-PRSMLVGKVN-PSLLDLEHLSYLD 124 (221)
Q Consensus 64 ~~c~w~g--v~c~~~~--------~~v~~l~l~~~~-~-----~l-~~~~~~~~~-~~n~l~g~~p-~~l~~l~~L~~L~ 124 (221)
..|.|.+ +.|.... .+++.++++++. . .+ ....+..+. +.|.+.+.++ ..+.++++|++|+
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence 4566665 7786432 468889988753 0 00 001111111 2345554553 4566677777777
Q ss_pred CccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccc--cCCCCCCCEEeCcCCCCCCcCCC-c-CCCCCCCCEEEccc
Q 027602 125 LSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQ--LGNLSSLRYLDLSRNFLYVVNFG-W-LSGLSFLEHLDFST 200 (221)
Q Consensus 125 L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~--l~~l~~L~~L~l~~N~l~~~~~p-~-~~~l~~L~~L~l~~ 200 (221)
+++|.+++ ..|..+..+++|++|++++|.+++.+|.. +..+++|++|++++|.++ +..| . +..+++|++|++++
T Consensus 86 Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 86 LDYNQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp CTTCTTCE-ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC-SCCCCGGGGGCTTCCEEECTT
T ss_pred CCCCccCc-cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccC-ccCcccccCCCCcccEEeCCC
Confidence 77777765 55666777777777777777776655544 666777777777777775 3334 2 56677777777777
Q ss_pred CCCCCCCCccccc
Q 027602 201 TRKMGFTDTKLVS 213 (221)
Q Consensus 201 N~l~g~ip~~~~~ 213 (221)
|++++..|..+..
T Consensus 164 n~l~~~~~~~l~~ 176 (455)
T 3v47_A 164 NKVKSICEEDLLN 176 (455)
T ss_dssp CCBSCCCTTTSGG
T ss_pred CcccccChhhhhc
Confidence 7777766655533
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.61 E-value=5.9e-15 Score=132.12 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=100.4
Q ss_pred CcEEEEEcCCCC-C-----CC-CCCccccCC-CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEE
Q 027602 78 GHILELNLRNPF-N-----YY-VQPDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLN 149 (221)
Q Consensus 78 ~~v~~l~l~~~~-~-----~l-~~~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~ 149 (221)
.+++.++++++. . .+ ....+..+. +.|.+.+..|..|.++++|++|++++|.+++ ..|..++.+++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC-CCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc-cChhhcCCcccCCEEE
Confidence 468889998864 0 11 111111111 3467777777778888888888888888886 5677788888888888
Q ss_pred ccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCccccccccC
Q 027602 150 LLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVSVITF 217 (221)
Q Consensus 150 l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~ 217 (221)
+++|.+++..|..++++++|++|++++|.+++..+| .+.++++|++|++++|++++..|..+..+.+.
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence 888888766667788888888888888888644556 67788888888888888888777766655544
No 24
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.61 E-value=1.1e-15 Score=126.73 Aligned_cols=106 Identities=19% Similarity=0.285 Sum_probs=60.2
Q ss_pred CCCCccccCccccCCC-CCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602 103 RSMLVGKVNPSLLDLE-HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV 181 (221)
Q Consensus 103 ~n~l~g~~p~~l~~l~-~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~ 181 (221)
.|.+.|.+|..+..++ +|++|++++|.+++ .+|..+..++ |++|++++|.+++..|..+..+++|++|++++|.++
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~-~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~- 234 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTG-KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA- 234 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEE-ECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC-
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeec-cCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee-
Confidence 3566666666666665 66666666666665 5555555554 555555555555555555555555555555555554
Q ss_pred cCCCcCCCCCCCCEEEcccCCCCCCCCccc
Q 027602 182 VNFGWLSGLSFLEHLDFSTTRKMGFTDTKL 211 (221)
Q Consensus 182 ~~~p~~~~l~~L~~L~l~~N~l~g~ip~~~ 211 (221)
+.+|.+..+++|++|++++|+++|.+|..+
T Consensus 235 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp CBGGGCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred eecCcccccCCCCEEECcCCcccCcCChHH
Confidence 344444445555555555555555555444
No 25
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.60 E-value=9.2e-15 Score=110.88 Aligned_cols=100 Identities=18% Similarity=0.088 Sum_probs=84.6
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+. .+|..+. ++|++|++++|.+++ ..|..+..+++|++|++++|++++..+..+.++++|++|++++|+++ +.
T Consensus 19 n~l~-~ip~~~~--~~l~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~ 93 (170)
T 3g39_A 19 KSLA-SVPTGIP--TTTQVLYLYDNQITK-LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SI 93 (170)
T ss_dssp SCCS-SCCSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred CCcC-ccCccCC--CCCcEEEcCCCcCCc-cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC-Ee
Confidence 3555 3666553 889999999999997 66788999999999999999999666666789999999999999997 44
Q ss_pred CC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602 184 FG-WLSGLSFLEHLDFSTTRKMGFTD 208 (221)
Q Consensus 184 ~p-~~~~l~~L~~L~l~~N~l~g~ip 208 (221)
.+ .+..+++|++|++++|.+++..+
T Consensus 94 ~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 94 PRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 44 58889999999999999998764
No 26
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=9.9e-16 Score=113.29 Aligned_cols=112 Identities=23% Similarity=0.226 Sum_probs=98.5
Q ss_pred CcEEEEEcCCCCCCCCCCccccCCCCCCCc-cccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCC
Q 027602 78 GHILELNLRNPFNYYVQPDQFEANPRSMLV-GKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG 156 (221)
Q Consensus 78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~-g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~ 156 (221)
.+++.+++++ |.+. +.+|..+..+++|++|++++|.+++ + ..+..+++|++|++++|.++
T Consensus 17 ~~l~~L~l~~----------------n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~ 77 (149)
T 2je0_A 17 SDVKELVLDN----------------SRSNEGKLEGLTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVS 77 (149)
T ss_dssp GGCSEEECTT----------------CBCBTTBCCSCCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCC
T ss_pred ccCeEEEccC----------------CcCChhHHHHHHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCccc
Confidence 4678888888 5888 8899989999999999999999996 4 77899999999999999999
Q ss_pred CCCccccCCCCCCCEEeCcCCCCCCcCC-CcCCCCCCCCEEEcccCCCCCCCC
Q 027602 157 GVIPHQLGNLSSLRYLDLSRNFLYVVNF-GWLSGLSFLEHLDFSTTRKMGFTD 208 (221)
Q Consensus 157 g~~p~~l~~l~~L~~L~l~~N~l~~~~~-p~~~~l~~L~~L~l~~N~l~g~ip 208 (221)
+.+|..+..+++|++|++++|.+++... ..+..+++|++|++++|.+++..+
T Consensus 78 ~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 78 GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp SCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred chHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 8788888889999999999999973222 478889999999999999998766
No 27
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.59 E-value=8e-15 Score=123.20 Aligned_cols=151 Identities=21% Similarity=0.268 Sum_probs=86.2
Q ss_pred CCCCCCCcccccceEEcCCC-----------CcEEEEEcCCCC-C-----CCC-CCccccCC-CCCCCccccCccccCCC
Q 027602 58 SWIGDGDCCLWAGVICDNVT-----------GHILELNLRNPF-N-----YYV-QPDQFEAN-PRSMLVGKVNPSLLDLE 118 (221)
Q Consensus 58 ~W~~~~~~c~w~gv~c~~~~-----------~~v~~l~l~~~~-~-----~l~-~~~~~~~~-~~n~l~g~~p~~l~~l~ 118 (221)
.|......|.|.|+ |+... .+++.++++++. . .+. ...+..+. +.|.+.+..|..+.+++
T Consensus 22 ~~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 22 SSNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100 (353)
T ss_dssp -----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence 34444678899887 65321 357788887753 0 010 01111111 33566665566666677
Q ss_pred CCcEEeCccCCCCCCccccc-ccCCCCCcEEEccCCcCCCCCcc--ccCCCCCCCEEeCcCCC-CCCcCCC-cCCCCCCC
Q 027602 119 HLSYLDLSFNDFQGVQIPRF-IGSMGNQKYLNLLGSQFGGVIPH--QLGNLSSLRYLDLSRNF-LYVVNFG-WLSGLSFL 193 (221)
Q Consensus 119 ~L~~L~L~~n~l~g~~ip~~-~~~l~~L~~L~l~~N~l~g~~p~--~l~~l~~L~~L~l~~N~-l~~~~~p-~~~~l~~L 193 (221)
+|++|++++|.+++ +|.. +..+++|++|++++|++++ +|. .+..+++|++|++++|. +. ...+ .+..+++|
T Consensus 101 ~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L 176 (353)
T 2z80_A 101 SLEHLDLSYNYLSN--LSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFL 176 (353)
T ss_dssp TCCEEECCSSCCSS--CCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEE
T ss_pred CCCEEECCCCcCCc--CCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCC
Confidence 77777777777763 3433 6667777777777777663 443 56667777777777663 43 2223 56666777
Q ss_pred CEEEcccCCCCCCCCccccc
Q 027602 194 EHLDFSTTRKMGFTDTKLVS 213 (221)
Q Consensus 194 ~~L~l~~N~l~g~ip~~~~~ 213 (221)
++|++++|++++..|..+..
T Consensus 177 ~~L~l~~n~l~~~~~~~l~~ 196 (353)
T 2z80_A 177 EELEIDASDLQSYEPKSLKS 196 (353)
T ss_dssp EEEEEEETTCCEECTTTTTT
T ss_pred CEEECCCCCcCccCHHHHhc
Confidence 77777777777666655543
No 28
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=1.7e-14 Score=117.11 Aligned_cols=103 Identities=25% Similarity=0.214 Sum_probs=51.4
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+.+..+..+.++++|++|++++|.+++ ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ +.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~ 172 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SL 172 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCc-cCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-cc
Confidence 44444444444555555555555555553 33333455555555555555555433333455555555555555554 22
Q ss_pred CC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602 184 FG-WLSGLSFLEHLDFSTTRKMGFTD 208 (221)
Q Consensus 184 ~p-~~~~l~~L~~L~l~~N~l~g~ip 208 (221)
.+ .+..+++|++|++++|++++..|
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CHHHhcCCccCCEEECCCCcCCccCH
Confidence 22 23445555555555555555444
No 29
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=1.3e-14 Score=112.14 Aligned_cols=107 Identities=18% Similarity=0.179 Sum_probs=90.8
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccc-cccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCc
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPR-FIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVV 182 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~-~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~ 182 (221)
|++ +.+|..+.. ++++|++++|.+++ ..+. .+..+++|++|++++|++++..|..+.++++|++|++++|+++ +
T Consensus 18 ~~l-~~ip~~~~~--~l~~L~l~~n~i~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 92 (192)
T 1w8a_A 18 RGL-KEIPRDIPL--HTTELLLNDNELGR-ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-E 92 (192)
T ss_dssp SCC-SSCCSCCCT--TCSEEECCSCCCCS-BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC-E
T ss_pred CCc-CcCccCCCC--CCCEEECCCCcCCc-cCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCC-c
Confidence 466 567776653 89999999999995 3333 3889999999999999999888999999999999999999997 4
Q ss_pred CCC-cCCCCCCCCEEEcccCCCCCCCCccccccc
Q 027602 183 NFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVSVI 215 (221)
Q Consensus 183 ~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~ 215 (221)
..+ .+..+++|++|++++|++++.+|..+..+.
T Consensus 93 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 126 (192)
T 1w8a_A 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126 (192)
T ss_dssp ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT
T ss_pred cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC
Confidence 445 688899999999999999999997775443
No 30
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=3.2e-15 Score=112.75 Aligned_cols=112 Identities=23% Similarity=0.233 Sum_probs=93.5
Q ss_pred CcEEEEEcCCCCCCCCCCccccCCCCCCCc-cccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCC
Q 027602 78 GHILELNLRNPFNYYVQPDQFEANPRSMLV-GKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG 156 (221)
Q Consensus 78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~-g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~ 156 (221)
.+++.+++++ |.+. +.+|..+..+++|++|++++|.+++ + ..+..+++|++|++++|.++
T Consensus 24 ~~L~~L~l~~----------------n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~ 84 (168)
T 2ell_A 24 AAVRELVLDN----------------CKSNDGKIEGLTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIF 84 (168)
T ss_dssp TSCSEEECCS----------------CBCBTTBCSSCCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCC
T ss_pred ccCCEEECCC----------------CCCChhhHHHHHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCc
Confidence 4688888888 5777 7888888899999999999999985 4 67888999999999999998
Q ss_pred CCCccccCCCCCCCEEeCcCCCCCCcCC-CcCCCCCCCCEEEcccCCCCCCCC
Q 027602 157 GVIPHQLGNLSSLRYLDLSRNFLYVVNF-GWLSGLSFLEHLDFSTTRKMGFTD 208 (221)
Q Consensus 157 g~~p~~l~~l~~L~~L~l~~N~l~~~~~-p~~~~l~~L~~L~l~~N~l~g~ip 208 (221)
+.+|..+..+++|++|++++|.+++... +.+..+++|++|++++|.+++..+
T Consensus 85 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 85 GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp SCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred hHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 7778777779999999999999863222 477788999999999999987655
No 31
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.57 E-value=1.8e-14 Score=113.61 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=96.1
Q ss_pred CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccc-cccCCCCCcEEEccCCcCC
Q 027602 78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPR-FIGSMGNQKYLNLLGSQFG 156 (221)
Q Consensus 78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~-~~~~l~~L~~L~l~~N~l~ 156 (221)
.+++.|++++ |.+.+..|..|.++++|++|++++|.++. +|. .+..+++|++|++++|+++
T Consensus 56 ~~L~~L~Ls~----------------N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 56 KKLRRIDLSN----------------NQISELAPDAFQGLRSLNSLVLYGNKITE--LPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp TTCCEEECCS----------------SCCCEECTTTTTTCSSCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCEEECCC----------------CcCCCcCHHHhhCCcCCCEEECCCCcCCc--cCHhHccCCCCCCEEECCCCCCC
Confidence 3566777776 68998889999999999999999999995 554 4688999999999999999
Q ss_pred CCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCC
Q 027602 157 GVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGF 206 (221)
Q Consensus 157 g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ 206 (221)
+..|..+..+++|++|++++|.++ ...+ .+..+++|++|++++|.+...
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 118 CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred EeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 888889999999999999999997 4444 688899999999999999764
No 32
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.57 E-value=2.8e-14 Score=111.21 Aligned_cols=107 Identities=21% Similarity=0.154 Sum_probs=86.1
Q ss_pred CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602 102 PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV 181 (221)
Q Consensus 102 ~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~ 181 (221)
+.|.+.+..+..+.++++|++|++++|.+++ ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~- 161 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD- 161 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-
Confidence 3467776666667889999999999999986 44555788999999999999998655556788999999999999875
Q ss_pred cCCCcCCCCCCCCEEEcccCCCCCCCCcccccccc
Q 027602 182 VNFGWLSGLSFLEHLDFSTTRKMGFTDTKLVSVIT 216 (221)
Q Consensus 182 ~~~p~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~ 216 (221)
..+++|++|+++.|+++|.+|..++.+..
T Consensus 162 ------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 ------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 34568889999999999999988766554
No 33
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.57 E-value=3.3e-14 Score=115.43 Aligned_cols=138 Identities=20% Similarity=0.259 Sum_probs=95.3
Q ss_pred cEEEEEcCCCC-C-----CCC-CCccccCC-CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEc
Q 027602 79 HILELNLRNPF-N-----YYV-QPDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNL 150 (221)
Q Consensus 79 ~v~~l~l~~~~-~-----~l~-~~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l 150 (221)
.++.++++++. . .+. ...+..+. +.|.+.+..+..+.++++|++|++++|.+++ ..+..+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc-cChhhhcCCccccEEEC
Confidence 57888887753 0 110 11111111 3466766666677888888888888888885 45566778888888888
Q ss_pred cCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCccccccccC
Q 027602 151 LGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVSVITF 217 (221)
Q Consensus 151 ~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~ 217 (221)
++|.+++..+..+..+++|++|++++|.++...+| .+..+++|++|++++|++++..+..+..+.++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence 88888766555678888888888888888643455 67778888888888888888766666554443
No 34
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.56 E-value=2e-14 Score=121.45 Aligned_cols=140 Identities=19% Similarity=0.198 Sum_probs=93.7
Q ss_pred cccccceEEcCCC---------CcEEEEEcCCCC------CCC--CCCccccCC-CCCCCccccCccccCCCCCcEEeCc
Q 027602 65 CCLWAGVICDNVT---------GHILELNLRNPF------NYY--VQPDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLS 126 (221)
Q Consensus 65 ~c~w~gv~c~~~~---------~~v~~l~l~~~~------~~l--~~~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~ 126 (221)
.|.+..+.|.... ..++.|+|+++. ..+ ....+..+. +.|.+.+..+..|.++++|++|+|+
T Consensus 17 ~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 17 LCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp EEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 3667778886421 246678887754 111 111222221 4467776666778888888888888
Q ss_pred cCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC--cC---CCCCCCCEEEcccC
Q 027602 127 FNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG--WL---SGLSFLEHLDFSTT 201 (221)
Q Consensus 127 ~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p--~~---~~l~~L~~L~l~~N 201 (221)
+|.+++ ..+..|..+++|++|+|++|++++..|..+.++++|++|++++|.++ .+| .+ ..+++|++|++++|
T Consensus 97 ~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 97 SNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS--RFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp SSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--SCCGGGTC----CTTCCEEECCSS
T ss_pred CCcCCc-CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC--eeCHHHhcCcccCCcCCEEECCCC
Confidence 888875 44445777888888888888887766777888888888888888885 344 23 45788888888888
Q ss_pred CCCCCC
Q 027602 202 RKMGFT 207 (221)
Q Consensus 202 ~l~g~i 207 (221)
+|++-.
T Consensus 174 ~l~~l~ 179 (361)
T 2xot_A 174 KLKKLP 179 (361)
T ss_dssp CCCCCC
T ss_pred CCCccC
Confidence 888643
No 35
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.56 E-value=7.6e-14 Score=113.11 Aligned_cols=103 Identities=21% Similarity=0.193 Sum_probs=54.7
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+.+..+..+.++++|++|++++|.+++ ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ ..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~ 172 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RV 172 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCe-eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc-Ee
Confidence 34443333444555666666666666654 33344555666666666666655433333555566666666666654 22
Q ss_pred CC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602 184 FG-WLSGLSFLEHLDFSTTRKMGFTD 208 (221)
Q Consensus 184 ~p-~~~~l~~L~~L~l~~N~l~g~ip 208 (221)
.+ .+..+++|++|++++|++++..+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCH
Confidence 22 34555666666666666655333
No 36
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.55 E-value=5.4e-14 Score=107.08 Aligned_cols=100 Identities=18% Similarity=0.114 Sum_probs=84.5
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+ +.+|..+. ++|++|++++|++++ ..|..+..+++|++|+|++|++++..+..+.++++|++|++++|+++ ..
T Consensus 22 n~l-~~iP~~~~--~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~-~l 96 (174)
T 2r9u_A 22 IRL-ASVPAGIP--TDKQRLWLNNNQITK-LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SI 96 (174)
T ss_dssp SCC-SSCCSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred CCC-CccCCCcC--CCCcEEEeCCCCccc-cCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc-ee
Confidence 355 56777664 899999999999997 66888999999999999999999654555689999999999999997 44
Q ss_pred CC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602 184 FG-WLSGLSFLEHLDFSTTRKMGFTD 208 (221)
Q Consensus 184 ~p-~~~~l~~L~~L~l~~N~l~g~ip 208 (221)
.+ .+..+++|++|++++|.+....+
T Consensus 97 ~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 97 PRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CHHHhccccCCCEEEeCCCCcccccc
Confidence 44 48889999999999999987643
No 37
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=4.4e-14 Score=114.69 Aligned_cols=129 Identities=18% Similarity=0.102 Sum_probs=101.5
Q ss_pred CcEEEEEcCCCC-CCCC------CCccccCC-CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEE
Q 027602 78 GHILELNLRNPF-NYYV------QPDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLN 149 (221)
Q Consensus 78 ~~v~~l~l~~~~-~~l~------~~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~ 149 (221)
.+++.++++++. ..+. ...+..+. ..|.+.+..+..+..+++|++|++++|.+++ ..+..+..+++|++|+
T Consensus 85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELD 163 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc-cCHHHhccCccCCEEE
Confidence 467888888764 1111 11111111 4578887777778999999999999999996 5556678999999999
Q ss_pred ccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602 150 LLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTD 208 (221)
Q Consensus 150 l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip 208 (221)
+++|++++..+..+..+++|++|++++|+++ +.++ .+..+++|++|++++|.+.|..|
T Consensus 164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCCCcCccCHHHhcCCccCCEEECCCCcCC-ccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 9999999777777899999999999999997 4455 57889999999999999887765
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.55 E-value=2.4e-14 Score=128.13 Aligned_cols=144 Identities=15% Similarity=0.083 Sum_probs=109.2
Q ss_pred Cccccc----ceEEcCCCCcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccc
Q 027602 64 DCCLWA----GVICDNVTGHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFI 139 (221)
Q Consensus 64 ~~c~w~----gv~c~~~~~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~ 139 (221)
++|.+. .+.|.. ..++.+--. ....+..+++ +.|.+.+..+..+.++++|++|++++|.+++ ..|..|
T Consensus 5 ~~c~~~~~~~~~~c~~--~~l~~ip~~-~~~~l~~L~L----s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~ 76 (606)
T 3vq2_A 5 NPCIEVVPNITYQCMD--QKLSKVPDD-IPSSTKNIDL----SFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAW 76 (606)
T ss_dssp -CCEEEETTTEEECTT--SCCSSCCTT-SCTTCCEEEC----TTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTT
T ss_pred CCceecCCCCceEccC--CCcccCCCC-CCCCcCEEEC----CCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHh
Confidence 456552 577765 334433211 1123333333 3478888888889999999999999999996 567788
Q ss_pred cCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCC-CCCcccccccc
Q 027602 140 GSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMG-FTDTKLVSVIT 216 (221)
Q Consensus 140 ~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g-~ip~~~~~~~~ 216 (221)
..+++|++|++++|.+++..|..++++++|++|++++|.++ ...+ .+.++++|++|++++|.+++ .+|..+..+.+
T Consensus 77 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~ 154 (606)
T 3vq2_A 77 HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154 (606)
T ss_dssp TTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTT
T ss_pred hchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCC
Confidence 99999999999999999888999999999999999999996 3333 78889999999999999987 78887765543
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.54 E-value=2.4e-14 Score=128.00 Aligned_cols=112 Identities=19% Similarity=0.078 Sum_probs=95.7
Q ss_pred CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602 102 PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV 181 (221)
Q Consensus 102 ~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~ 181 (221)
++|++++..+..|.++++|++|+|++|++++ ..|..|.++++|++|+|++|++++..+..|.++++|++|++++|+++
T Consensus 60 s~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~-i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~- 137 (635)
T 4g8a_A 60 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA- 137 (635)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC-
T ss_pred eCCCCCCCCHHHHhCCCCCCEEECCCCcCCC-cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC-
Confidence 4588988878899999999999999999995 44567999999999999999999766677899999999999999997
Q ss_pred cCCC-cCCCCCCCCEEEcccCCCCC-CCCccccccc
Q 027602 182 VNFG-WLSGLSFLEHLDFSTTRKMG-FTDTKLVSVI 215 (221)
Q Consensus 182 ~~~p-~~~~l~~L~~L~l~~N~l~g-~ip~~~~~~~ 215 (221)
+..+ .+.++++|++|++++|.+++ .+|..+..+.
T Consensus 138 ~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~ 173 (635)
T 4g8a_A 138 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 173 (635)
T ss_dssp CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred CCChhhhhcCcccCeeccccCccccCCCchhhccch
Confidence 4334 68899999999999999986 4677665443
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.54 E-value=8.6e-14 Score=113.45 Aligned_cols=109 Identities=23% Similarity=0.224 Sum_probs=86.1
Q ss_pred CCCCCccccCccccCCCCCcEEeCccCC-CCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCC
Q 027602 102 PRSMLVGKVNPSLLDLEHLSYLDLSFND-FQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLY 180 (221)
Q Consensus 102 ~~n~l~g~~p~~l~~l~~L~~L~L~~n~-l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~ 180 (221)
..|.+.+..|..+.++++|++|++++|. ++. ..|..+..+++|++|++++|.+++..|..+.++++|++|++++|.++
T Consensus 64 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 142 (285)
T 1ozn_A 64 HSNVLARIDAAAFTGLALLEQLDLSDNAQLRS-VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSCTTCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCccceeCHhhcCCccCCCEEeCCCCCCccc-cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc
Confidence 3467777778888888899999999887 764 44677888889999999999888777777888899999999999886
Q ss_pred CcCCC-cCCCCCCCCEEEcccCCCCCCCCcccc
Q 027602 181 VVNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLV 212 (221)
Q Consensus 181 ~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~ 212 (221)
...+ .+..+++|++|++++|++++..+..+.
T Consensus 143 -~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 174 (285)
T 1ozn_A 143 -ALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174 (285)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred -ccCHhHhccCCCccEEECCCCcccccCHHHhc
Confidence 3333 577888999999999988875554443
No 41
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.54 E-value=3.1e-14 Score=115.58 Aligned_cols=102 Identities=22% Similarity=0.154 Sum_probs=51.6
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC-CCccccCCCCCCCEEeCcCCCCCCc
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG-VIPHQLGNLSSLRYLDLSRNFLYVV 182 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g-~~p~~l~~l~~L~~L~l~~N~l~~~ 182 (221)
|.+.+..+..+.++++|++|++++|.+++ ..+..+..+++|++|++++|.+++ .+|..+..+++|++|++++|+++ .
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~-~ 163 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-S 163 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-E
T ss_pred CccCccChhhhcCCccccEEECCCCCccc-cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC-c
Confidence 44554444555555555555555555553 333345555555555555555543 23555555555555555555554 2
Q ss_pred CCC-cCCCCCCCC----EEEcccCCCCCCC
Q 027602 183 NFG-WLSGLSFLE----HLDFSTTRKMGFT 207 (221)
Q Consensus 183 ~~p-~~~~l~~L~----~L~l~~N~l~g~i 207 (221)
..+ .+..+.+|+ +|++++|++++..
T Consensus 164 ~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~ 193 (276)
T 2z62_A 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (276)
T ss_dssp ECGGGGHHHHTCTTCCEEEECCSSCCCEEC
T ss_pred CCHHHhhhhhhccccceeeecCCCcccccC
Confidence 222 333333333 5555555555433
No 42
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=6e-14 Score=111.26 Aligned_cols=112 Identities=21% Similarity=0.105 Sum_probs=95.8
Q ss_pred CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC
Q 027602 78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG 157 (221)
Q Consensus 78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g 157 (221)
..++.|++++ |.+.+..+..+..+++|++|++++|.+++ ..+..+..+++|++|++++|+++
T Consensus 64 ~~L~~L~L~~----------------N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~- 125 (229)
T 3e6j_A 64 INLKELYLGS----------------NQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLT- 125 (229)
T ss_dssp TTCCEEECCS----------------SCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC-
T ss_pred cCCcEEECCC----------------CCCCCcChhhcccCCCcCEEECCCCcCCc-cChhHhCcchhhCeEeccCCccc-
Confidence 4577888887 58865555667899999999999999996 44556789999999999999998
Q ss_pred CCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602 158 VIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTD 208 (221)
Q Consensus 158 ~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip 208 (221)
.+|..+..+++|++|++++|+++ ...+ .+..+++|++|++++|.+++..+
T Consensus 126 ~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 126 ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 78999999999999999999997 3333 67889999999999999998765
No 43
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=1.9e-14 Score=128.55 Aligned_cols=109 Identities=20% Similarity=0.165 Sum_probs=97.1
Q ss_pred cEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCC
Q 027602 79 HILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGV 158 (221)
Q Consensus 79 ~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~ 158 (221)
.++.|++++ |.+.+ +|. +.++++|+.|++++|.++ .+|..++.+++|++|++++|.+++
T Consensus 442 ~L~~L~Ls~----------------n~l~~-lp~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 442 DVRVLHLAH----------------KDLTV-LCH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp TCSEEECTT----------------SCCSS-CCC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred CceEEEecC----------------CCCCC-CcC-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCC-
Confidence 366788887 58876 676 999999999999999999 789999999999999999999996
Q ss_pred CccccCCCCCCCEEeCcCCCCCCcCC-C-cCCCCCCCCEEEcccCCCCCCCCcc
Q 027602 159 IPHQLGNLSSLRYLDLSRNFLYVVNF-G-WLSGLSFLEHLDFSTTRKMGFTDTK 210 (221)
Q Consensus 159 ~p~~l~~l~~L~~L~l~~N~l~~~~~-p-~~~~l~~L~~L~l~~N~l~g~ip~~ 210 (221)
+| .++.+++|++|++++|.++ +.. | .+..+++|++|++++|++++.+|..
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~-~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCC-SSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred Cc-ccCCCCCCcEEECCCCCCC-CCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 77 8999999999999999997 443 5 8889999999999999999987754
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.54 E-value=2.2e-14 Score=128.74 Aligned_cols=105 Identities=15% Similarity=0.078 Sum_probs=79.7
Q ss_pred CCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCc
Q 027602 103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVV 182 (221)
Q Consensus 103 ~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~ 182 (221)
.|.+.+..|..+..+++|++|++++|.+++ ..|..++.+++|++|++++|.+++..+..++++++|++|++++|.++ +
T Consensus 84 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~ 161 (597)
T 3oja_B 84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-R 161 (597)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-B
T ss_pred CCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-C
Confidence 467777777788888888888888888886 55666788888888888888887443444578888888888888886 4
Q ss_pred CCC-cCCCCCCCCEEEcccCCCCCCCCc
Q 027602 183 NFG-WLSGLSFLEHLDFSTTRKMGFTDT 209 (221)
Q Consensus 183 ~~p-~~~~l~~L~~L~l~~N~l~g~ip~ 209 (221)
.+| .+..+++|++|++++|.+++.-+.
T Consensus 162 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 189 (597)
T 3oja_B 162 IEDDTFQATTSLQNLQLSSNRLTHVDLS 189 (597)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSBCCGG
T ss_pred CChhhhhcCCcCcEEECcCCCCCCcChh
Confidence 444 677788888888888888875433
No 45
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.53 E-value=4.3e-14 Score=123.15 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=62.0
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+.+..|..|.++++|++|++++|.+++ ..+..+..+++|++|++++|.+++..|..+.++++|++|++++|.+. ..
T Consensus 66 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~ 143 (477)
T 2id5_A 66 NIVSAVEPGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YI 143 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCS-CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EE
T ss_pred CccCEeChhhhhCCccCCEEECCCCcCCc-cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-ee
Confidence 55555556666666666666666666663 22233556666666666666666555556666666666666666664 22
Q ss_pred CC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602 184 FG-WLSGLSFLEHLDFSTTRKMGFTD 208 (221)
Q Consensus 184 ~p-~~~~l~~L~~L~l~~N~l~g~ip 208 (221)
.+ .+..+++|++|++++|++++..+
T Consensus 144 ~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 144 SHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred ChhhccCCCCCCEEECCCCcCcccCh
Confidence 23 55666666666666666665443
No 46
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.53 E-value=4e-14 Score=122.38 Aligned_cols=105 Identities=18% Similarity=0.121 Sum_probs=83.6
Q ss_pred CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602 102 PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV 181 (221)
Q Consensus 102 ~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~ 181 (221)
+.|.+.+..|..+.++++|++|++++|.+++ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++
T Consensus 307 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~- 384 (455)
T 3v47_A 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK- 384 (455)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-
T ss_pred CCCcccccChhHhcCcccCCEEECCCCccCC-cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc-
Confidence 3467777777778888888888888888876 55677788888888888888888777888888888888888888886
Q ss_pred cCCC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602 182 VNFG-WLSGLSFLEHLDFSTTRKMGFTD 208 (221)
Q Consensus 182 ~~~p-~~~~l~~L~~L~l~~N~l~g~ip 208 (221)
...+ .+..+++|++|++++|++++.+|
T Consensus 385 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 385 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCHhHhccCCcccEEEccCCCcccCCC
Confidence 3333 46778888888888888888887
No 47
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.53 E-value=6.1e-14 Score=125.49 Aligned_cols=109 Identities=16% Similarity=0.064 Sum_probs=66.8
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+.+..|..|.++++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..++++++|++|++++|.+++..
T Consensus 67 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 145 (606)
T 3t6q_A 67 CQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK 145 (606)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTCCCSE-ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCC
T ss_pred CccceeChhhccCccccCeeeCCCCcccc-cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccC
Confidence 55555556666666666666666666665 45556666666666666666666544555666666666666666665334
Q ss_pred CCcCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602 184 FGWLSGLSFLEHLDFSTTRKMGFTDTKLVS 213 (221)
Q Consensus 184 ~p~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 213 (221)
+|.+..+++|++|++++|++++..|..+..
T Consensus 146 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 175 (606)
T 3t6q_A 146 LPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175 (606)
T ss_dssp CCTTCCCTTCCEEECCSSCCCEECHHHHHT
T ss_pred cccccCCcccCEEEcccCcccccChhhhhh
Confidence 454445666666666666666655544433
No 48
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.53 E-value=2e-14 Score=122.19 Aligned_cols=101 Identities=17% Similarity=0.134 Sum_probs=75.1
Q ss_pred CCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccc-cCCCCCCCEEeCcCCCCCC
Q 027602 103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQ-LGNLSSLRYLDLSRNFLYV 181 (221)
Q Consensus 103 ~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~-l~~l~~L~~L~l~~N~l~~ 181 (221)
.|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.++ .+|.. +.++++|++|++++|.+.
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~- 154 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE- 154 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCc-CCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccC-
Confidence 366666666677888888888888888886 55566778888888888888887 45544 577888888888888876
Q ss_pred cCCC-cCCCCCCCCEEEcccCCCCCC
Q 027602 182 VNFG-WLSGLSFLEHLDFSTTRKMGF 206 (221)
Q Consensus 182 ~~~p-~~~~l~~L~~L~l~~N~l~g~ 206 (221)
...+ .+..+++|++|++++|++++.
T Consensus 155 ~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 155 RIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp BCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred ccChhhccCCCCCCEEECCCCcCCcc
Confidence 3334 577788888888888888764
No 49
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.52 E-value=5.2e-15 Score=133.85 Aligned_cols=101 Identities=16% Similarity=0.209 Sum_probs=91.1
Q ss_pred cCcccc--CCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCc-CCC-CCccccCCC------CCCCEEeCcCCCC
Q 027602 110 VNPSLL--DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQ-FGG-VIPHQLGNL------SSLRYLDLSRNFL 179 (221)
Q Consensus 110 ~p~~l~--~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~-l~g-~~p~~l~~l------~~L~~L~l~~N~l 179 (221)
+|+.+. ++++|++|++++|.+.| .+|..++++++|++|++++|+ ++| .+|..++.+ ++|++|++++|.+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCS-SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCc-cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 999999 99999999999999999 999999999999999999998 998 899888776 9999999999999
Q ss_pred CCcCCC---cCCCCCCCCEEEcccCCCCCCCCcccccc
Q 027602 180 YVVNFG---WLSGLSFLEHLDFSTTRKMGFTDTKLVSV 214 (221)
Q Consensus 180 ~~~~~p---~~~~l~~L~~L~l~~N~l~g~ip~~~~~~ 214 (221)
+ .+| .+..+++|++|++++|+++|.+| .+..+
T Consensus 318 ~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 318 K--TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp S--SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred C--ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence 6 555 48889999999999999999999 55443
No 50
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.52 E-value=6.8e-14 Score=126.87 Aligned_cols=130 Identities=18% Similarity=0.096 Sum_probs=88.0
Q ss_pred CcEEEEEcCCCC-CCCCC------CccccC-CCCCCCccccCccccCCCCCcEEeCccCCCCCCcccc-cccCCCCCcEE
Q 027602 78 GHILELNLRNPF-NYYVQ------PDQFEA-NPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPR-FIGSMGNQKYL 148 (221)
Q Consensus 78 ~~v~~l~l~~~~-~~l~~------~~~~~~-~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~-~~~~l~~L~~L 148 (221)
.+++.++++++. ..+.. ..+..+ .+.|.+.+..|..+.++++|++|++++|.+++ +|. .|..+++|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ--LSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc--cChhhhccCCCCCEE
Confidence 468888888753 11110 011111 13466777777777778888888888888774 444 57778888888
Q ss_pred EccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCcc
Q 027602 149 NLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDTK 210 (221)
Q Consensus 149 ~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~ 210 (221)
++++|.+++..|..++++++|++|++++|.++ +..+ .+.++++|++|++++|.+++..|..
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS-CCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCccc-ccCchhhcccccCCEEEccCCcccccCHHH
Confidence 88888877655667778888888888888876 3444 5667888888888888887766543
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.52 E-value=1.1e-13 Score=112.88 Aligned_cols=103 Identities=22% Similarity=0.135 Sum_probs=53.9
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+.+..|..+.++++|++|++++|.+++ ..+..+..+++|++|++++|++++..+..+..+++|++|++++|.++ +.
T Consensus 115 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~ 192 (285)
T 1ozn_A 115 CGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HV 192 (285)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EE
T ss_pred CcCCEECHhHhhCCcCCCEEECCCCcccc-cCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc-cc
Confidence 44444444445555555555555555553 22333555555555555555555333334555555566666555554 23
Q ss_pred CC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602 184 FG-WLSGLSFLEHLDFSTTRKMGFTD 208 (221)
Q Consensus 184 ~p-~~~~l~~L~~L~l~~N~l~g~ip 208 (221)
.| .+..+++|++|++++|++++..+
T Consensus 193 ~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred CHhHccCcccccEeeCCCCcCCcCCH
Confidence 23 45555666666666666665433
No 52
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.52 E-value=7.4e-14 Score=116.92 Aligned_cols=97 Identities=25% Similarity=0.174 Sum_probs=82.6
Q ss_pred CCccccCccccCCCCCcEEeCcc-CCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 105 MLVGKVNPSLLDLEHLSYLDLSF-NDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 105 ~l~g~~p~~l~~l~~L~~L~L~~-n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
++.+ +|. +..+++|+.|+|++ |.+++ ..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|+|+ +.
T Consensus 20 ~l~~-ip~-l~~~~~L~~L~l~~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~ 95 (347)
T 2ifg_A 20 ALDS-LHH-LPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SL 95 (347)
T ss_dssp CCTT-TTT-SCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CC
T ss_pred CCCc-cCC-CCCCCCeeEEEccCCCCCCC-cChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-ee
Confidence 5553 777 99999999999996 99996 55577999999999999999999988888999999999999999997 44
Q ss_pred CCc-CCCCCCCCEEEcccCCCCCC
Q 027602 184 FGW-LSGLSFLEHLDFSTTRKMGF 206 (221)
Q Consensus 184 ~p~-~~~l~~L~~L~l~~N~l~g~ 206 (221)
++. +..++ |++|++.+|.|...
T Consensus 96 ~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 96 SWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CHHHcccCC-ceEEEeeCCCccCC
Confidence 444 44444 99999999999864
No 53
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=2e-13 Score=105.53 Aligned_cols=104 Identities=17% Similarity=0.170 Sum_probs=88.4
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+. .+|..+. ++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+.++++|++|++++|.++ ..
T Consensus 20 ~~l~-~ip~~~~--~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~-~i 93 (193)
T 2wfh_A 20 KGLK-VLPKGIP--RDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CI 93 (193)
T ss_dssp SCCS-SCCSCCC--TTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BC
T ss_pred CCCC-cCCCCCC--CCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC-Ee
Confidence 3554 5666553 68999999999999 78999999999999999999999877788999999999999999997 44
Q ss_pred CC-cCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602 184 FG-WLSGLSFLEHLDFSTTRKMGFTDTKLVS 213 (221)
Q Consensus 184 ~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 213 (221)
.+ .+..+++|++|++++|++++..+..+..
T Consensus 94 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~ 124 (193)
T 2wfh_A 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFND 124 (193)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred CHHHhCCCCCCCEEECCCCCCCeeChhhhhc
Confidence 44 7889999999999999999765544543
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.52 E-value=1.1e-13 Score=119.67 Aligned_cols=99 Identities=19% Similarity=0.116 Sum_probs=51.5
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+.+..+..|.++++|++|++++|.+++ ..+..+..+++|++|++++|.++...+..+.++++|++|++++|+.. ..
T Consensus 98 n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l-~~ 175 (440)
T 3zyj_A 98 NHIRTIEIGAFNGLANLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL-SY 175 (440)
T ss_dssp SCCCEECGGGGTTCSSCCEEECCSSCCSS-CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC-CE
T ss_pred CcCCccChhhccCCccCCEEECCCCcCCe-eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCc-ce
Confidence 44444444455555555555555555553 22233555555555555555555433344555555555555553322 22
Q ss_pred CC--cCCCCCCCCEEEcccCCCC
Q 027602 184 FG--WLSGLSFLEHLDFSTTRKM 204 (221)
Q Consensus 184 ~p--~~~~l~~L~~L~l~~N~l~ 204 (221)
++ .+.++++|++|++++|+++
T Consensus 176 i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 176 ISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp ECTTTTTTCSSCCEEECTTSCCS
T ss_pred eCcchhhcccccCeecCCCCcCc
Confidence 22 4555666666666666666
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.52 E-value=2.3e-14 Score=117.90 Aligned_cols=146 Identities=22% Similarity=0.265 Sum_probs=95.5
Q ss_pred cccccceEEcCCC---------CcEEEEEcCCCC-CCCC------CCccccCC-CCCCCc--cccCccccCCCCCcEEeC
Q 027602 65 CCLWAGVICDNVT---------GHILELNLRNPF-NYYV------QPDQFEAN-PRSMLV--GKVNPSLLDLEHLSYLDL 125 (221)
Q Consensus 65 ~c~w~gv~c~~~~---------~~v~~l~l~~~~-~~l~------~~~~~~~~-~~n~l~--g~~p~~l~~l~~L~~L~L 125 (221)
.|.|.++.|.... ..++.++++++. ..+. ...+..+. +.|.+. +..+..+..+++|++|++
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 4899999997522 367888888753 1110 11111111 335554 333555666777777777
Q ss_pred ccCCCCCCcccccccCCCCCcEEEccCCcCCCCCc-cccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCC
Q 027602 126 SFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIP-HQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRK 203 (221)
Q Consensus 126 ~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p-~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l 203 (221)
++|.++ .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. +..+ .+..+++|++|++++|.+
T Consensus 86 s~n~i~--~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 86 SFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp CSCSEE--EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEE
T ss_pred CCCccc--cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEECCCCcc
Confidence 777777 567777778888888888888775443 46777888888888888875 4444 566788888888888888
Q ss_pred CC-CCCccccc
Q 027602 204 MG-FTDTKLVS 213 (221)
Q Consensus 204 ~g-~ip~~~~~ 213 (221)
++ .+|..+..
T Consensus 163 ~~~~~~~~~~~ 173 (306)
T 2z66_A 163 QENFLPDIFTE 173 (306)
T ss_dssp GGGEECSCCTT
T ss_pred ccccchhHHhh
Confidence 77 45655433
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.51 E-value=5.3e-14 Score=115.73 Aligned_cols=108 Identities=25% Similarity=0.293 Sum_probs=74.6
Q ss_pred CCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCc
Q 027602 103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVV 182 (221)
Q Consensus 103 ~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~ 182 (221)
.|.+.+..+..+..+++|++|++++|.+++..+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .
T Consensus 135 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 213 (306)
T 2z66_A 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-S 213 (306)
T ss_dssp TSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS-B
T ss_pred CCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC-c
Confidence 356666666667777777777777777764125666777777777777777777666667777777777777777775 3
Q ss_pred CCC-cCCCCCCCCEEEcccCCCCCCCCccc
Q 027602 183 NFG-WLSGLSFLEHLDFSTTRKMGFTDTKL 211 (221)
Q Consensus 183 ~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~ 211 (221)
..+ .+..+++|++|++++|++++.+|..+
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 333 56667777777777777777766554
No 57
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.51 E-value=6e-14 Score=130.61 Aligned_cols=146 Identities=18% Similarity=0.177 Sum_probs=104.1
Q ss_pred ccccceEEcCCCCcEEEEEcCCCC-C-----CC-CCCccccCC-CCCCCcccc-CccccCCCCCcEEeCccCCCCCCccc
Q 027602 66 CLWAGVICDNVTGHILELNLRNPF-N-----YY-VQPDQFEAN-PRSMLVGKV-NPSLLDLEHLSYLDLSFNDFQGVQIP 136 (221)
Q Consensus 66 c~w~gv~c~~~~~~v~~l~l~~~~-~-----~l-~~~~~~~~~-~~n~l~g~~-p~~l~~l~~L~~L~L~~n~l~g~~ip 136 (221)
|.|..|.+ ...+++.|+|+++. . .+ ....+..++ +.|...+.+ |..|.++++|++|+|++|.+++ ..|
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~-~~p 90 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF-LHP 90 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE-ECT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc-cCH
Confidence 45666665 34678899998764 0 00 001111111 234456666 6678888888888888888886 668
Q ss_pred ccccCCCCCcEEEccCCcCCCCCccc--cCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602 137 RFIGSMGNQKYLNLLGSQFGGVIPHQ--LGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVS 213 (221)
Q Consensus 137 ~~~~~l~~L~~L~l~~N~l~g~~p~~--l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 213 (221)
..+..+++|++|++++|.+++.+|.. ++++++|++|++++|.+++..++ .+.++++|++|++++|.+++..|..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 88888888888888888888766665 78888888888888888743343 6788888899999988888888776654
Q ss_pred c
Q 027602 214 V 214 (221)
Q Consensus 214 ~ 214 (221)
+
T Consensus 171 l 171 (844)
T 3j0a_A 171 L 171 (844)
T ss_dssp H
T ss_pred c
Confidence 3
No 58
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.51 E-value=2.3e-13 Score=111.66 Aligned_cols=106 Identities=23% Similarity=0.213 Sum_probs=81.4
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+. .+|..+..+++|++|++++|++++ ..|..|..+++|++|++++|++++..+..+..+++|++|++++|+++ ..
T Consensus 87 N~l~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 163 (290)
T 1p9a_G 87 NQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-EL 163 (290)
T ss_dssp SCCS-SCCCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CC
T ss_pred CcCC-cCchhhccCCCCCEEECCCCcCcc-cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-cc
Confidence 5555 677778888889999999998885 44566888888999999999888655566778888999999988886 33
Q ss_pred CC-cCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602 184 FG-WLSGLSFLEHLDFSTTRKMGFTDTKLVS 213 (221)
Q Consensus 184 ~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 213 (221)
.+ .+..+++|++|++++|+++ .+|..+..
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~ 193 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFG 193 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred CHHHhcCcCCCCEEECCCCcCC-ccChhhcc
Confidence 33 4567888999999998888 56655433
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.51 E-value=1.1e-13 Score=120.05 Aligned_cols=100 Identities=16% Similarity=0.057 Sum_probs=48.0
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+.+..+..|.++++|++|++++|.+++ ..+..+..+++|++|++++|.++...+..+.++++|++|++++|+.. +.
T Consensus 109 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l-~~ 186 (452)
T 3zyi_A 109 NSIRQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL-EY 186 (452)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSB-CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC-CE
T ss_pred CccCCcChhhccCcccCCEEECCCCcCCc-cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCc-cc
Confidence 44444444444445555555555555442 22223444455555555555544333334444555555555543222 22
Q ss_pred CC--cCCCCCCCCEEEcccCCCCC
Q 027602 184 FG--WLSGLSFLEHLDFSTTRKMG 205 (221)
Q Consensus 184 ~p--~~~~l~~L~~L~l~~N~l~g 205 (221)
++ .+..+++|++|++++|++++
T Consensus 187 i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 187 ISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCSS
T ss_pred cChhhccCCCCCCEEECCCCcccc
Confidence 22 35556666666666666665
No 60
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=7.1e-14 Score=108.18 Aligned_cols=90 Identities=18% Similarity=0.178 Sum_probs=47.1
Q ss_pred cccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCC-CCCcCCCcCCCCC
Q 027602 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNF-LYVVNFGWLSGLS 191 (221)
Q Consensus 113 ~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~-l~~~~~p~~~~l~ 191 (221)
.+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|. + ..+|.+..++
T Consensus 83 ~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i--~~~~~l~~l~ 159 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKDVTS-DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI--TDIMPLKTLP 159 (197)
T ss_dssp GGTTCTTCCEEEEECTTCBG-GGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBC--CCCGGGGGCS
T ss_pred hhhcCCCCCEEEeECCccCc-ccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCc--cccHhhcCCC
Confidence 44455555555555555554 344455555555555555555554445555555555555555554 3 2344444555
Q ss_pred CCCEEEcccCCCCC
Q 027602 192 FLEHLDFSTTRKMG 205 (221)
Q Consensus 192 ~L~~L~l~~N~l~g 205 (221)
+|++|++++|++++
T Consensus 160 ~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 160 ELKSLNIQFDGVHD 173 (197)
T ss_dssp SCCEEECTTBCCCC
T ss_pred CCCEEECCCCCCcC
Confidence 55555555555554
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.49 E-value=8.2e-14 Score=122.30 Aligned_cols=102 Identities=17% Similarity=0.057 Sum_probs=58.7
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCccccccc-CCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCc
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIG-SMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVV 182 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~-~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~ 182 (221)
|.+.+..|..+..+++|+.|++++|.+++ .+|..+. .+++|++|++++|.+++. | ....+++|++|++++|.++ +
T Consensus 130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~ 205 (487)
T 3oja_A 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-F 205 (487)
T ss_dssp SCCCSGGGBCGGGGSSEEEEECTTSCCCE-EEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-E
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCCCCC-cChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCC-C
Confidence 45666656666666666666666666665 4555543 456666666666666543 2 2334566666666666664 3
Q ss_pred CCCcCCCCCCCCEEEcccCCCCCCCCcc
Q 027602 183 NFGWLSGLSFLEHLDFSTTRKMGFTDTK 210 (221)
Q Consensus 183 ~~p~~~~l~~L~~L~l~~N~l~g~ip~~ 210 (221)
.+|.+..+++|++|++++|.+++ +|..
T Consensus 206 ~~~~~~~l~~L~~L~Ls~N~l~~-lp~~ 232 (487)
T 3oja_A 206 MGPEFQSAAGVTWISLRNNKLVL-IEKA 232 (487)
T ss_dssp ECGGGGGGTTCSEEECTTSCCCE-ECTT
T ss_pred CCHhHcCCCCccEEEecCCcCcc-cchh
Confidence 33455555666666666666664 4433
No 62
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.49 E-value=2.8e-13 Score=111.22 Aligned_cols=103 Identities=22% Similarity=0.159 Sum_probs=75.1
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+.+..+ . ..+++|++|++++|.++ .+|..+..+++|++|++++|++++..|..+.++++|++|++++|+++ ..
T Consensus 65 n~l~~~~~-~-~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~ 139 (290)
T 1p9a_G 65 AELTKLQV-D-GTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL 139 (290)
T ss_dssp SCCCEEEC-C-SCCTTCCEEECCSSCCS--SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CC
T ss_pred CccCcccC-C-CCCCcCCEEECCCCcCC--cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-cc
Confidence 45554322 2 56777777778778777 57777778888888888888888665667888888888888888886 33
Q ss_pred CC-cCCCCCCCCEEEcccCCCCCCCCccc
Q 027602 184 FG-WLSGLSFLEHLDFSTTRKMGFTDTKL 211 (221)
Q Consensus 184 ~p-~~~~l~~L~~L~l~~N~l~g~ip~~~ 211 (221)
.+ .+..+++|++|++++|++++..+..+
T Consensus 140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 168 (290)
T 1p9a_G 140 PPGLLTPTPKLEKLSLANNNLTELPAGLL 168 (290)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSCCCTTTT
T ss_pred ChhhcccccCCCEEECCCCcCCccCHHHh
Confidence 33 56678888888888888886544333
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.48 E-value=2.4e-13 Score=120.54 Aligned_cols=114 Identities=22% Similarity=0.294 Sum_probs=77.2
Q ss_pred CCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCc
Q 027602 103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVV 182 (221)
Q Consensus 103 ~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~ 182 (221)
.|.+.+..|..|.++++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+..++++++|++|++++|.++..
T Consensus 61 ~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~ 139 (570)
T 2z63_A 61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139 (570)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC
T ss_pred CCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCcccee
Confidence 356666656667777777777777777775 4445677777777777777777654444577777777777777777633
Q ss_pred CCC-cCCCCCCCCEEEcccCCCCCCCCccccccccC
Q 027602 183 NFG-WLSGLSFLEHLDFSTTRKMGFTDTKLVSVITF 217 (221)
Q Consensus 183 ~~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~~~~ 217 (221)
.+| .+.++++|++|++++|++++..|..+..+.++
T Consensus 140 ~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp CCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred cChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 455 56677777777777777777666655554444
No 64
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.47 E-value=1.7e-13 Score=115.77 Aligned_cols=100 Identities=20% Similarity=0.138 Sum_probs=43.0
Q ss_pred CCCccccCcccc-CCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCc
Q 027602 104 SMLVGKVNPSLL-DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVV 182 (221)
Q Consensus 104 n~l~g~~p~~l~-~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~ 182 (221)
|.+.+..+..+. ++++|+.|++++|.+++ ..|..|..+++|++|+|++|++++..+..+..+++|++|++++|.++ .
T Consensus 49 N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~ 126 (361)
T 2xot_A 49 NNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-V 126 (361)
T ss_dssp SCCCEECTTSSSSCCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-E
T ss_pred CCCCccChhhhhhcccccCEEECCCCcCCc-cChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc-E
Confidence 344433333333 44444444444444443 22233444444444444444444333333444444444444444443 2
Q ss_pred CCC-cCCCCCCCCEEEcccCCCCC
Q 027602 183 NFG-WLSGLSFLEHLDFSTTRKMG 205 (221)
Q Consensus 183 ~~p-~~~~l~~L~~L~l~~N~l~g 205 (221)
..+ .+..+++|++|++++|+|++
T Consensus 127 ~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 127 VDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCS
T ss_pred ECHHHhCCcccCCEEECCCCcCCe
Confidence 212 34444444444444444444
No 65
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=1.7e-13 Score=106.04 Aligned_cols=99 Identities=18% Similarity=0.172 Sum_probs=81.8
Q ss_pred CCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCc
Q 027602 103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVV 182 (221)
Q Consensus 103 ~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~ 182 (221)
.|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+.+.+| .+..+++|++|++++|.++
T Consensus 97 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~-~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-- 172 (197)
T 4ezg_A 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDD-SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-- 172 (197)
T ss_dssp CTTCBGGGSCCCTTCTTCCEEECCSSBCBG-GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC--
T ss_pred CCccCcccChhhcCCCCCCEEEecCCccCc-HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc--
Confidence 478888888889999999999999999997 778888999999999999998444666 6888999999999999985
Q ss_pred CCCcCCCCCCCCEEEcccCCCCC
Q 027602 183 NFGWLSGLSFLEHLDFSTTRKMG 205 (221)
Q Consensus 183 ~~p~~~~l~~L~~L~l~~N~l~g 205 (221)
.++.+..+++|++|++++|++.+
T Consensus 173 ~~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 173 DYRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCTTGGGCSSCCEEEECBC----
T ss_pred ChHHhccCCCCCEEEeeCcccCC
Confidence 45677888999999999999875
No 66
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.46 E-value=1.6e-13 Score=122.70 Aligned_cols=117 Identities=16% Similarity=0.067 Sum_probs=100.1
Q ss_pred CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC
Q 027602 78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG 157 (221)
Q Consensus 78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g 157 (221)
..++.+++++ |.+.+..|..|.++++|++|++++|.+++ ..|..|..+++|++|++++|.+++
T Consensus 33 ~~l~~L~Ls~----------------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 33 NSTECLEFSF----------------NVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp TTCCEEECTT----------------CCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCSE
T ss_pred CcCcEEEccC----------------CccCcCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCCCCcccc
Confidence 3577888887 68988888899999999999999999997 678889999999999999999998
Q ss_pred CCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCCCC-CCCccc
Q 027602 158 VIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMG-FTDTKL 211 (221)
Q Consensus 158 ~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l~g-~ip~~~ 211 (221)
..|..++++++|++|++++|.++......+..+++|++|++++|++++ .+|...
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 150 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC
T ss_pred cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccccc
Confidence 888899999999999999999973222378889999999999999998 455443
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.46 E-value=1.7e-13 Score=108.98 Aligned_cols=99 Identities=14% Similarity=0.175 Sum_probs=59.6
Q ss_pred CccccCccccCCCCCcEEeCcc-CCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCC---EEeCcCC-CCC
Q 027602 106 LVGKVNPSLLDLEHLSYLDLSF-NDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLR---YLDLSRN-FLY 180 (221)
Q Consensus 106 l~g~~p~~l~~l~~L~~L~L~~-n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~---~L~l~~N-~l~ 180 (221)
+.+..+..+.++++|++|++++ |.+++ ..+..+..+++|++|++++|.+++ +|. +..+++|+ +|++++| .++
T Consensus 68 l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~ 144 (239)
T 2xwt_C 68 LQQLESHSFYNLSKVTHIEIRNTRNLTY-IDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT 144 (239)
T ss_dssp CCEECTTTEESCTTCCEEEEEEETTCCE-ECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC
T ss_pred cceeCHhHcCCCcCCcEEECCCCCCeeE-cCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh
Confidence 4444444566666666666666 66663 223455666666666666666664 554 66666666 6777766 664
Q ss_pred CcCCC-cCCCCCCCC-EEEcccCCCCCCCCc
Q 027602 181 VVNFG-WLSGLSFLE-HLDFSTTRKMGFTDT 209 (221)
Q Consensus 181 ~~~~p-~~~~l~~L~-~L~l~~N~l~g~ip~ 209 (221)
...+ .+..+++|+ +|++++|+++ .+|.
T Consensus 145 -~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~ 173 (239)
T 2xwt_C 145 -SIPVNAFQGLCNETLTLKLYNNGFT-SVQG 173 (239)
T ss_dssp -EECTTTTTTTBSSEEEEECCSCCCC-EECT
T ss_pred -hcCcccccchhcceeEEEcCCCCCc-ccCH
Confidence 2222 456667777 7777777776 5553
No 68
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.46 E-value=5.7e-13 Score=110.91 Aligned_cols=119 Identities=20% Similarity=0.199 Sum_probs=79.2
Q ss_pred cccccceEEcCCC---------CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcc
Q 027602 65 CCLWAGVICDNVT---------GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQI 135 (221)
Q Consensus 65 ~c~w~gv~c~~~~---------~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~i 135 (221)
.|.|..+.|.... ..++.+++++ |.+.+..|..+.++++|++|++++|.+++ ..
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~----------------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~ 94 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQN----------------NDISELRKDDFKGLQHLYALVLVNNKISK-IH 94 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCS----------------SCCCEECTTTTTTCTTCCEEECCSSCCCE-EC
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCC----------------CcCCccCHhHhhCCCCCcEEECCCCccCc-cC
Confidence 4789999986421 2466677766 46666666667777777777777777775 45
Q ss_pred cccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCC
Q 027602 136 PRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKM 204 (221)
Q Consensus 136 p~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~ 204 (221)
|..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+. ...+ .+..+++|++|++++|.++
T Consensus 95 ~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp GGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCB
T ss_pred HhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccc
Confidence 666777777777777777776 5555444 56777777777764 2222 4566777777777777664
No 69
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.46 E-value=1.5e-12 Score=98.86 Aligned_cols=104 Identities=19% Similarity=0.154 Sum_probs=83.8
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|++. .+|..+ .++|+.|++++|.+++ ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ +.
T Consensus 17 ~~l~-~~p~~~--~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~ 91 (177)
T 2o6r_A 17 KGLT-SVPTGI--PSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SL 91 (177)
T ss_dssp SCCS-SCCTTC--CTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred CCCc-cCCCCC--CCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc-cc
Confidence 3554 445443 3789999999999996 55556789999999999999999666666799999999999999997 44
Q ss_pred CC-cCCCCCCCCEEEcccCCCCCCCCcccc
Q 027602 184 FG-WLSGLSFLEHLDFSTTRKMGFTDTKLV 212 (221)
Q Consensus 184 ~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~ 212 (221)
++ .+..+++|++|++++|++++..+..+.
T Consensus 92 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 121 (177)
T 2o6r_A 92 PNGVFDKLTQLKELALDTNQLKSVPDGIFD 121 (177)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred CHHHhhCCcccCEEECcCCcceEeCHHHhc
Confidence 44 578899999999999999976554443
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.45 E-value=1.1e-13 Score=122.31 Aligned_cols=119 Identities=23% Similarity=0.350 Sum_probs=102.7
Q ss_pred CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC
Q 027602 78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG 157 (221)
Q Consensus 78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g 157 (221)
.+++.+++++ |.+.+..|..+.++++|++|++++|.+++ ..|..++.+++|++|++++|.+++
T Consensus 50 ~~L~~L~Ls~----------------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~ 112 (549)
T 2z81_A 50 ANLQVLILKS----------------SRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQT 112 (549)
T ss_dssp TTCCEEECTT----------------SCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSS
T ss_pred CcccEEECCC----------------CCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEECCCCcccc
Confidence 4677788877 68998888899999999999999999997 566669999999999999999986
Q ss_pred -CCccccCCCCCCCEEeCcCCCCCCcCCC--cCCCCCCCCEEEcccCCCCCCCCcccccc
Q 027602 158 -VIPHQLGNLSSLRYLDLSRNFLYVVNFG--WLSGLSFLEHLDFSTTRKMGFTDTKLVSV 214 (221)
Q Consensus 158 -~~p~~l~~l~~L~~L~l~~N~l~~~~~p--~~~~l~~L~~L~l~~N~l~g~ip~~~~~~ 214 (221)
..|..++++++|++|++++|.+. +.+| .+.++++|++|++++|++++.+|..+..+
T Consensus 113 ~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 113 LGVTSLFPNLTNLQTLRIGNVETF-SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp SCSSCSCTTCTTCCEEEEEESSSC-CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred cchhhhhhccCCccEEECCCCccc-cccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 46778999999999999999854 4444 68889999999999999999988776544
No 71
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.45 E-value=2.9e-13 Score=120.01 Aligned_cols=120 Identities=19% Similarity=0.080 Sum_probs=96.6
Q ss_pred CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC
Q 027602 78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG 157 (221)
Q Consensus 78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g 157 (221)
.+++.+++++ |.+.+..+..|.++++|++|++++|.+++ ..|..|..+++|++|++++|.+++
T Consensus 28 ~~l~~L~Ls~----------------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~ 90 (570)
T 2z63_A 28 FSTKNLDLSF----------------NPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQS 90 (570)
T ss_dssp SSCCEEECCS----------------CCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCE
T ss_pred ccccEEEccC----------------CccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCcCCc
Confidence 4577788877 58887777788889999999999999886 556678889999999999999887
Q ss_pred CCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCC-CCCccccccc
Q 027602 158 VIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMG-FTDTKLVSVI 215 (221)
Q Consensus 158 ~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g-~ip~~~~~~~ 215 (221)
..|..+.++++|++|++++|.++ ...+ .+..+++|++|++++|.+++ .+|..+..+.
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~ 149 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred cCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccC
Confidence 76778888999999999999886 3222 57888999999999999887 5787765443
No 72
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.45 E-value=7.5e-13 Score=110.05 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=67.1
Q ss_pred CcccccceEEcCCC---------CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCc
Q 027602 64 DCCLWAGVICDNVT---------GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQ 134 (221)
Q Consensus 64 ~~c~w~gv~c~~~~---------~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ 134 (221)
..|.|..+.|.... ..++.++++++ .+.+..+..+.++++|++|++++|.+++ .
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n----------------~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~ 91 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNN----------------KITEIKDGDFKNLKNLHTLILINNKISK-I 91 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSS----------------CCCCBCTTTTTTCTTCCEEECCSSCCCC-B
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCC----------------cCCEeChhhhccCCCCCEEECCCCcCCe-e
Confidence 35789999987421 34667777764 4444434344445555555555555543 3
Q ss_pred ccccccCCCCCcEEEccCC---------------------cCCCCCccccCCCCCCCEEeCcCCCCCC-cCCC-cCCCCC
Q 027602 135 IPRFIGSMGNQKYLNLLGS---------------------QFGGVIPHQLGNLSSLRYLDLSRNFLYV-VNFG-WLSGLS 191 (221)
Q Consensus 135 ip~~~~~l~~L~~L~l~~N---------------------~l~g~~p~~l~~l~~L~~L~l~~N~l~~-~~~p-~~~~l~ 191 (221)
.|..+..+++|++|++++| .+++..+..+.++++|++|++++|.+.. +..+ .+..++
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 171 (330)
T 1xku_A 92 SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171 (330)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred CHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence 3444444455555555544 4444333445555666666666666531 1222 455566
Q ss_pred CCCEEEcccCCCCC
Q 027602 192 FLEHLDFSTTRKMG 205 (221)
Q Consensus 192 ~L~~L~l~~N~l~g 205 (221)
+|++|++++|.++.
T Consensus 172 ~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 172 KLSYIRIADTNITT 185 (330)
T ss_dssp TCCEEECCSSCCCS
T ss_pred CcCEEECCCCcccc
Confidence 66666666666654
No 73
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.44 E-value=6.7e-13 Score=119.09 Aligned_cols=108 Identities=16% Similarity=0.055 Sum_probs=77.0
Q ss_pred CCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCC
Q 027602 105 MLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNF 184 (221)
Q Consensus 105 ~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~ 184 (221)
.+....+..+.++++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..++++++|++|++++|.++ ..+
T Consensus 62 ~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~ 139 (597)
T 3oja_B 62 TMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 139 (597)
T ss_dssp EESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred CCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCC
Confidence 4443333346677888888888888876 55557778888888888888887766666778888888888888875 333
Q ss_pred C-cCCCCCCCCEEEcccCCCCCCCCcccccc
Q 027602 185 G-WLSGLSFLEHLDFSTTRKMGFTDTKLVSV 214 (221)
Q Consensus 185 p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~~ 214 (221)
+ .+..+++|++|++++|.+++..|..+..+
T Consensus 140 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 170 (597)
T 3oja_B 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred HHHhccCCCCCEEEeeCCcCCCCChhhhhcC
Confidence 3 35678888888888888887777655443
No 74
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.44 E-value=4.7e-13 Score=117.69 Aligned_cols=99 Identities=23% Similarity=0.180 Sum_probs=85.5
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+.+..|..+.++++|++|++++|++++ ..|..+..+++|++|++++|+++ .+|.. .+++|++|++++|.+++..
T Consensus 31 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~ 106 (520)
T 2z7x_B 31 NYISELWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALP 106 (520)
T ss_dssp SCCCCCCHHHHTTCTTCCEEECCSSCCCE-EEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCC
T ss_pred CcccccChhhccccccccEEecCCCccCC-cChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCcccccc
Confidence 68887777889999999999999999997 66888999999999999999998 57766 8899999999999997445
Q ss_pred CC-cCCCCCCCCEEEcccCCCCCC
Q 027602 184 FG-WLSGLSFLEHLDFSTTRKMGF 206 (221)
Q Consensus 184 ~p-~~~~l~~L~~L~l~~N~l~g~ 206 (221)
+| .+..+++|++|++++|++++.
T Consensus 107 ~p~~~~~l~~L~~L~L~~n~l~~~ 130 (520)
T 2z7x_B 107 ICKEFGNMSQLKFLGLSTTHLEKS 130 (520)
T ss_dssp CCGGGGGCTTCCEEEEEESSCCGG
T ss_pred chhhhccCCcceEEEecCcccchh
Confidence 66 788899999999999999874
No 75
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.43 E-value=4e-13 Score=125.07 Aligned_cols=107 Identities=19% Similarity=0.200 Sum_probs=64.2
Q ss_pred CCCCccccCccccCCCCCcEEeCccCCCCCCccccc--ccCCCCCcEEEccCCcCCCCCc-cccCCCCCCCEEeCcCCCC
Q 027602 103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRF--IGSMGNQKYLNLLGSQFGGVIP-HQLGNLSSLRYLDLSRNFL 179 (221)
Q Consensus 103 ~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~--~~~l~~L~~L~l~~N~l~g~~p-~~l~~l~~L~~L~l~~N~l 179 (221)
.|.+.+..|..|.++++|++|++++|.+++ .+|.. +..+++|++|++++|.+++..| ..++++++|++|++++|.+
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSD-AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSS-CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCc-ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 355666666666666666666666666665 44443 5666666666666666655433 3556666666666666666
Q ss_pred CCcCCC-cCCCC--CCCCEEEcccCCCCCCCCccc
Q 027602 180 YVVNFG-WLSGL--SFLEHLDFSTTRKMGFTDTKL 211 (221)
Q Consensus 180 ~~~~~p-~~~~l--~~L~~L~l~~N~l~g~ip~~~ 211 (221)
+ +..+ .+..+ ++|+.|++++|.+++.+|..+
T Consensus 161 ~-~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~ 194 (844)
T 3j0a_A 161 F-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194 (844)
T ss_dssp C-CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC
T ss_pred C-eeCHHHcccccCCccceEECCCCccccccccch
Confidence 5 3333 44444 566666666666666665544
No 76
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.43 E-value=2.4e-13 Score=119.54 Aligned_cols=107 Identities=22% Similarity=0.197 Sum_probs=92.2
Q ss_pred CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC-CCccccCCCCCCCEEeCcCCCCC
Q 027602 102 PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG-VIPHQLGNLSSLRYLDLSRNFLY 180 (221)
Q Consensus 102 ~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g-~~p~~l~~l~~L~~L~l~~N~l~ 180 (221)
+.|.+.+..|..+.++++|++|++++|.++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.++
T Consensus 53 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 53 SHNRIQYLDISVFKFNQELEYLDLSHNKLV--KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CSSCCCEEEGGGGTTCTTCCEEECCSSCCC--EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred CCCccCCcChHHhhcccCCCEEecCCCcee--ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence 447888888999999999999999999999 68876 79999999999999987 57889999999999999999997
Q ss_pred CcCCCcCCCCCCC--CEEEcccCCC--CCCCCccccccc
Q 027602 181 VVNFGWLSGLSFL--EHLDFSTTRK--MGFTDTKLVSVI 215 (221)
Q Consensus 181 ~~~~p~~~~l~~L--~~L~l~~N~l--~g~ip~~~~~~~ 215 (221)
. ..+..+++| ++|++++|.+ ++.+|..+..+.
T Consensus 129 ~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 129 K---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp G---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred h---hhccccccceeeEEEeecccccccccccccccccc
Confidence 3 345566777 9999999999 888888776654
No 77
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.43 E-value=5.9e-13 Score=115.96 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=78.1
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+.+..+..|.++++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+..+.++++|++|++++|.+. ..
T Consensus 42 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~ 119 (477)
T 2id5_A 42 NRIKTLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-IL 119 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC-EE
T ss_pred CccceECHhHccCCCCCCEEECCCCccCE-eChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc-cC
Confidence 57777767777778888888888887776 55677777788888888888777544445677788888888888775 44
Q ss_pred CC-cCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602 184 FG-WLSGLSFLEHLDFSTTRKMGFTDTKLVS 213 (221)
Q Consensus 184 ~p-~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 213 (221)
.+ .+..+++|++|++++|.+++..|..+..
T Consensus 120 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 150 (477)
T 2id5_A 120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150 (477)
T ss_dssp CTTTTTTCTTCCEEEECCTTCCEECTTSSTT
T ss_pred ChhHccccccCCEEECCCCccceeChhhccC
Confidence 44 6667778888888888777766655543
No 78
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.42 E-value=2.5e-13 Score=121.33 Aligned_cols=133 Identities=18% Similarity=0.151 Sum_probs=84.2
Q ss_pred CCCCCCCCcc-----cccce-EEcCCCCcEEEEEcCCCC-CCCCC---CccccCC-CCCCCccccCccccCCCCCcEEeC
Q 027602 57 ASWIGDGDCC-----LWAGV-ICDNVTGHILELNLRNPF-NYYVQ---PDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDL 125 (221)
Q Consensus 57 ~~W~~~~~~c-----~w~gv-~c~~~~~~v~~l~l~~~~-~~l~~---~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L 125 (221)
.+|..+.++| .|.|+ .|.. ++++.++++++. ..++. ..+..+. +.|.+. .+| ..+++|++|++
T Consensus 34 ~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~L 107 (571)
T 3cvr_A 34 DKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLP---ELPASLEYLDA 107 (571)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCS-CCC---CCCTTCCEEEC
T ss_pred HHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCc-ccc---cccCCCCEEEc
Confidence 3455455667 79999 7865 578999998853 11110 1111111 335555 455 34577777777
Q ss_pred ccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCCCC
Q 027602 126 SFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMG 205 (221)
Q Consensus 126 ~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l~g 205 (221)
++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.++ .+|. .+++|++|++++|+|++
T Consensus 108 s~N~l~~--ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~--~lp~--~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 108 CDNRLST--LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT--MLPE--LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp CSSCCSC--CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--CCCC--CCTTCCEEECCSSCCSC
T ss_pred cCCCCCC--cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC--cCCC--cCCCcCEEECCCCCCCC
Confidence 7777773 566 544 77777777777775 555 5677777777777775 2554 46677777777777777
Q ss_pred CCCc
Q 027602 206 FTDT 209 (221)
Q Consensus 206 ~ip~ 209 (221)
+|.
T Consensus 175 -lp~ 177 (571)
T 3cvr_A 175 -LPE 177 (571)
T ss_dssp -CCC
T ss_pred -cch
Confidence 665
No 79
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.42 E-value=1e-13 Score=129.18 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=57.4
Q ss_pred ccCcccc--CCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCc-CCC-CCccccCCCC-------CCCEEeCcCC
Q 027602 109 KVNPSLL--DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQ-FGG-VIPHQLGNLS-------SLRYLDLSRN 177 (221)
Q Consensus 109 ~~p~~l~--~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~-l~g-~~p~~l~~l~-------~L~~L~l~~N 177 (221)
.+|+.++ ++++|++|++++|.+.+ .+|..+.++++|++|++++|+ ++| .+|..++.++ +|++|++++|
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~-~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMT-QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCC-SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred cCChhhhhccCCCCCEEECcCCCCCc-cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 3666665 66777777777776666 666666666666666666666 665 5555443333 5566666665
Q ss_pred CCCCcCCCc---CCCCCCCCEEEcccCCCCCCCC
Q 027602 178 FLYVVNFGW---LSGLSFLEHLDFSTTRKMGFTD 208 (221)
Q Consensus 178 ~l~~~~~p~---~~~l~~L~~L~l~~N~l~g~ip 208 (221)
.++ .+|. +.++++|++|++++|+++ .||
T Consensus 559 ~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 559 NLE--EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp CCC--BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred cCC--ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 554 3332 555555555555555555 555
No 80
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.42 E-value=1.5e-12 Score=110.63 Aligned_cols=101 Identities=18% Similarity=0.118 Sum_probs=70.0
Q ss_pred ccCc-cccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC--
Q 027602 109 KVNP-SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-- 185 (221)
Q Consensus 109 ~~p~-~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-- 185 (221)
.+|+ .+..+++|++|++++|.+++ ..+..+..+++|++|++++|.+++..|..++++++|++|++++|.++ .+|
T Consensus 59 ~l~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~ 135 (390)
T 3o6n_A 59 KLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS--SLPRG 135 (390)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTT
T ss_pred hCChhHhcccccCcEEECCCCcccc-cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC--cCCHH
Confidence 3443 35667777777777777774 44456777777777777777777666666777777777777777775 344
Q ss_pred cCCCCCCCCEEEcccCCCCCCCCcccc
Q 027602 186 WLSGLSFLEHLDFSTTRKMGFTDTKLV 212 (221)
Q Consensus 186 ~~~~l~~L~~L~l~~N~l~g~ip~~~~ 212 (221)
.+..+++|++|++++|++++..|..+.
T Consensus 136 ~~~~l~~L~~L~L~~n~l~~~~~~~~~ 162 (390)
T 3o6n_A 136 IFHNTPKLTTLSMSNNNLERIEDDTFQ 162 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCBCCTTTTS
T ss_pred HhcCCCCCcEEECCCCccCccChhhcc
Confidence 356677777777777777776665443
No 81
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.41 E-value=7.2e-13 Score=117.88 Aligned_cols=108 Identities=23% Similarity=0.190 Sum_probs=63.6
Q ss_pred CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC
Q 027602 78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG 157 (221)
Q Consensus 78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g 157 (221)
.+++.+++++ |.+.+..|..+.++++|++|++++|.+++ ..|..|..+++|++|++++|+++
T Consensus 52 ~~L~~L~Ls~----------------N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~- 113 (562)
T 3a79_B 52 PRTKALSLSQ----------------NSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQ- 113 (562)
T ss_dssp TTCCEEECCS----------------SCCCCCCGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECTTSCCC-
T ss_pred CCcCEEECCC----------------CCccccChhhhccCCCccEEECCCCCCCc-CCHHHhCCCCCCCEEECCCCcCC-
Confidence 4677888877 45555555556666666666666666664 44555666666666666666665
Q ss_pred CCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCC
Q 027602 158 VIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMG 205 (221)
Q Consensus 158 ~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g 205 (221)
.+|.. .+++|++|++++|+++...+| .+.++++|++|++++|++++
T Consensus 114 ~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 114 NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 44544 556666666666665432333 45556666666666665554
No 82
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.40 E-value=5.4e-13 Score=100.38 Aligned_cols=108 Identities=25% Similarity=0.190 Sum_probs=92.3
Q ss_pred CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC
Q 027602 78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG 157 (221)
Q Consensus 78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g 157 (221)
..++.+++++ |.+.+. ..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++
T Consensus 49 ~~L~~L~l~~----------------n~l~~~--~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~ 109 (168)
T 2ell_A 49 VNLEFLSLIN----------------VGLISV--SNLPKLPKLKKLELSENRIFG-GLDMLAEKLPNLTHLNLSGNKLKD 109 (168)
T ss_dssp GGCCEEEEES----------------SCCCCC--SSCCCCSSCCEEEEESCCCCS-CCCHHHHHCTTCCEEECBSSSCCS
T ss_pred CCCCEEeCcC----------------CCCCCh--hhhccCCCCCEEECcCCcCch-HHHHHHhhCCCCCEEeccCCccCc
Confidence 4678888887 577765 678999999999999999997 688888889999999999999986
Q ss_pred CC-ccccCCCCCCCEEeCcCCCCCCcCCC----cCCCCCCCCEEEcccCCCCC
Q 027602 158 VI-PHQLGNLSSLRYLDLSRNFLYVVNFG----WLSGLSFLEHLDFSTTRKMG 205 (221)
Q Consensus 158 ~~-p~~l~~l~~L~~L~l~~N~l~~~~~p----~~~~l~~L~~L~l~~N~l~g 205 (221)
.. +..+..+++|++|++++|.++ ...+ .+..+++|++|++++|.+..
T Consensus 110 ~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 110 ISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp SGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred chhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChhh
Confidence 32 278899999999999999997 4444 57789999999999998865
No 83
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.40 E-value=3.3e-12 Score=110.35 Aligned_cols=96 Identities=18% Similarity=0.289 Sum_probs=75.3
Q ss_pred cccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCC
Q 027602 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLS 191 (221)
Q Consensus 113 ~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~ 191 (221)
.+.++++|++|++++|.++ .+|. +..+++|++|++++|.+++..|..+.++++|++|++++|.++ ...+ .+..++
T Consensus 180 ~~~~l~~L~~L~L~~n~l~--~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~ 255 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLR--EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQ 255 (440)
T ss_dssp TTTTCSSCCEEECTTSCCS--SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCT
T ss_pred hhhcccccCeecCCCCcCc--cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee-EEChhhhcCCC
Confidence 5667778888888888887 4554 677888888888888888777888888888888888888886 3334 677888
Q ss_pred CCCEEEcccCCCCCCCCcccc
Q 027602 192 FLEHLDFSTTRKMGFTDTKLV 212 (221)
Q Consensus 192 ~L~~L~l~~N~l~g~ip~~~~ 212 (221)
+|++|++++|++++..+..+.
T Consensus 256 ~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 256 SLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp TCCEEECTTSCCCCCCTTTTS
T ss_pred CCCEEECCCCCCCccChhHhc
Confidence 999999999999876665543
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.40 E-value=2.2e-13 Score=112.65 Aligned_cols=90 Identities=14% Similarity=0.037 Sum_probs=47.2
Q ss_pred CCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCC--Ccccc--CCCCCCCEEeCcCCCCCCc-CCC--cCCCC
Q 027602 118 EHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGV--IPHQL--GNLSSLRYLDLSRNFLYVV-NFG--WLSGL 190 (221)
Q Consensus 118 ~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~--~p~~l--~~l~~L~~L~l~~N~l~~~-~~p--~~~~l 190 (221)
++|++|++++|++++ ..|..+..+++|++|++++|++.+. +|..+ ..+++|++|++++|+++.. .++ .+..+
T Consensus 149 ~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l 227 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227 (312)
T ss_dssp TTCCEEEEESCSCCC-CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeeCCCCcc-chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence 555555555555554 3334555555555555555555443 22233 5555666666666655310 111 12345
Q ss_pred CCCCEEEcccCCCCCCCC
Q 027602 191 SFLEHLDFSTTRKMGFTD 208 (221)
Q Consensus 191 ~~L~~L~l~~N~l~g~ip 208 (221)
++|++|++++|++++.+|
T Consensus 228 ~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp CCCSEEECTTSCCCSSCC
T ss_pred CCCCEEECCCCcCCcccc
Confidence 666677777776666553
No 85
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.40 E-value=6.2e-13 Score=111.60 Aligned_cols=128 Identities=13% Similarity=0.129 Sum_probs=96.9
Q ss_pred CcEEEEEcCCCC------CCCC-CCccccCC-CCCCCccccCccccCCCCCcEEeCccCCCCCCcccc--cccCCCCCcE
Q 027602 78 GHILELNLRNPF------NYYV-QPDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPR--FIGSMGNQKY 147 (221)
Q Consensus 78 ~~v~~l~l~~~~------~~l~-~~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~--~~~~l~~L~~ 147 (221)
.+++.++++++. ..+. ...+..+. +.|.+.+..+..+.++++|++|++++|.++ .+|. .+..+++|++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK--TLGETSLFSHLTKLQI 153 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS--SSCSSCSCTTCTTCCE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc--ccCchhhhccCCCCcE
Confidence 467888887764 1111 11122111 447777654445899999999999999999 5665 7889999999
Q ss_pred EEccCCc-CCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCCCCCc
Q 027602 148 LNLLGSQ-FGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMGFTDT 209 (221)
Q Consensus 148 L~l~~N~-l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~ 209 (221)
|++++|. +.+..|..+.++++|++|++++|.++ +..| .+..+++|++|++++|.++. +|.
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~-~~~ 215 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHIL-LLE 215 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-EECTTTTTTCSEEEEEEEECSCSTT-HHH
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCCcC-ccCHHHHhccccCCeecCCCCcccc-chh
Confidence 9999994 66555678899999999999999997 5545 78889999999999999854 443
No 86
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.39 E-value=1.2e-12 Score=118.72 Aligned_cols=109 Identities=19% Similarity=0.074 Sum_probs=74.0
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+.+..+..|.++++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..++++++|++|++++|.++ +.
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~ 160 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ-AL 160 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC-CB
T ss_pred CccCccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc-cc
Confidence 56664444457777777777777777775 44456777777777777777777766667777777777777777775 33
Q ss_pred CC-cC--CCCCCCCEEEcccCCCCCCCCcccccc
Q 027602 184 FG-WL--SGLSFLEHLDFSTTRKMGFTDTKLVSV 214 (221)
Q Consensus 184 ~p-~~--~~l~~L~~L~l~~N~l~g~ip~~~~~~ 214 (221)
.+ .+ ..+++|++|++++|++++..|..+..+
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 194 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGS
T ss_pred CHHHhhccccccccEEECCCCcccccChhhhhhh
Confidence 33 22 345677777777777777776655443
No 87
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.38 E-value=5.1e-12 Score=109.54 Aligned_cols=96 Identities=20% Similarity=0.300 Sum_probs=75.8
Q ss_pred cccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCC
Q 027602 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLS 191 (221)
Q Consensus 113 ~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~ 191 (221)
.+.++++|++|++++|.+++ +| .+..+++|++|++++|.+++..|..+.++++|++|++++|.++ ...+ .+..++
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~ 266 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIKD--MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLA 266 (452)
T ss_dssp TTTTCTTCCEEECTTSCCSS--CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC-EECTTTTTTCT
T ss_pred hccCCCCCCEEECCCCcccc--cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc-eECHHHhcCCC
Confidence 46677788888888888873 44 4677888888888888888877888888899999999999886 4434 677888
Q ss_pred CCCEEEcccCCCCCCCCcccc
Q 027602 192 FLEHLDFSTTRKMGFTDTKLV 212 (221)
Q Consensus 192 ~L~~L~l~~N~l~g~ip~~~~ 212 (221)
+|++|++++|++++..+..+.
T Consensus 267 ~L~~L~L~~N~l~~~~~~~~~ 287 (452)
T 3zyi_A 267 SLVELNLAHNNLSSLPHDLFT 287 (452)
T ss_dssp TCCEEECCSSCCSCCCTTSST
T ss_pred CCCEEECCCCcCCccChHHhc
Confidence 999999999999876665543
No 88
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.38 E-value=2.6e-12 Score=114.26 Aligned_cols=112 Identities=22% Similarity=0.142 Sum_probs=96.6
Q ss_pred EEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCc
Q 027602 81 LELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIP 160 (221)
Q Consensus 81 ~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p 160 (221)
+.+++++ |++++ +|..+. ++|++|++++|.+++ ..|..+..+++|++|++++|++++..|
T Consensus 34 ~~l~ls~----------------~~L~~-ip~~~~--~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 93 (562)
T 3a79_B 34 SMVDYSN----------------RNLTH-VPKDLP--PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDF 93 (562)
T ss_dssp CEEECTT----------------SCCCS-CCTTSC--TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECT
T ss_pred cEEEcCC----------------CCCcc-CCCCCC--CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCH
Confidence 7788888 47775 777654 899999999999997 666789999999999999999998888
Q ss_pred cccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCCCC-CCCccccccc
Q 027602 161 HQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMG-FTDTKLVSVI 215 (221)
Q Consensus 161 ~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l~g-~ip~~~~~~~ 215 (221)
..+.++++|++|++++|+++ .+|.. .+++|++|++++|++++ ++|..+..+.
T Consensus 94 ~~~~~l~~L~~L~Ls~N~l~--~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~ 146 (562)
T 3a79_B 94 HVFLFNQDLEYLDVSHNRLQ--NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLT 146 (562)
T ss_dssp TTTTTCTTCCEEECTTSCCC--EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCT
T ss_pred HHhCCCCCCCEEECCCCcCC--ccCcc-ccccCCEEECCCCCccccCchHhhcccC
Confidence 89999999999999999996 56744 89999999999999998 6777765544
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.38 E-value=7.3e-13 Score=109.53 Aligned_cols=105 Identities=22% Similarity=0.054 Sum_probs=68.2
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCc--ccccc--cCCCCCcEEEccCCcCCC--CCcc-ccCCCCCCCEEeCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQ--IPRFI--GSMGNQKYLNLLGSQFGG--VIPH-QLGNLSSLRYLDLSR 176 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~--ip~~~--~~l~~L~~L~l~~N~l~g--~~p~-~l~~l~~L~~L~l~~ 176 (221)
|.+.+..|..+.++++|++|++++|++.+ . +|..+ ..+++|++|++++|++++ .++. .+..+++|++|++++
T Consensus 159 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~ 237 (312)
T 1wwl_A 159 AHSLNFSCEQVRVFPALSTLDLSDNPELG-ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237 (312)
T ss_dssp CSCCCCCTTTCCCCSSCCEEECCSCTTCH-HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT
T ss_pred CCCccchHHHhccCCCCCEEECCCCCcCc-chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC
Confidence 66776666777777888888888877765 4 23344 667777777777777762 2222 224567777777777
Q ss_pred CCCCCcCC--CcCCCCCCCCEEEcccCCCCCCCCccc
Q 027602 177 NFLYVVNF--GWLSGLSFLEHLDFSTTRKMGFTDTKL 211 (221)
Q Consensus 177 N~l~~~~~--p~~~~l~~L~~L~l~~N~l~g~ip~~~ 211 (221)
|+++ +.+ +.+..+++|++|++++|+++ .+|..+
T Consensus 238 N~l~-~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 238 NSLR-DAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp SCCC-SSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred CcCC-cccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 7775 333 24455677777777777777 566544
No 90
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=4.4e-13 Score=98.92 Aligned_cols=103 Identities=25% Similarity=0.174 Sum_probs=87.7
Q ss_pred CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCC
Q 027602 78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGG 157 (221)
Q Consensus 78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g 157 (221)
.+++.+++++ |.+.+. ..+.++++|++|++++|.+++ .+|..+..+++|++|++++|.+++
T Consensus 42 ~~L~~L~l~~----------------n~l~~~--~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~ls~N~i~~ 102 (149)
T 2je0_A 42 EELEFLSTIN----------------VGLTSI--ANLPKLNKLKKLELSDNRVSG-GLEVLAEKCPNLTHLNLSGNKIKD 102 (149)
T ss_dssp TTCCEEECTT----------------SCCCCC--TTCCCCTTCCEEECCSSCCCS-CTHHHHHHCTTCCEEECTTSCCCS
T ss_pred CCCcEEECcC----------------CCCCCc--hhhhcCCCCCEEECCCCcccc-hHHHHhhhCCCCCEEECCCCcCCC
Confidence 4688888887 577766 678999999999999999997 688888889999999999999986
Q ss_pred C-CccccCCCCCCCEEeCcCCCCCCcCCC----cCCCCCCCCEEEccc
Q 027602 158 V-IPHQLGNLSSLRYLDLSRNFLYVVNFG----WLSGLSFLEHLDFST 200 (221)
Q Consensus 158 ~-~p~~l~~l~~L~~L~l~~N~l~~~~~p----~~~~l~~L~~L~l~~ 200 (221)
. .|..+..+++|++|++++|.++ +..+ .+..+++|++|++++
T Consensus 103 ~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 103 LSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTBC
T ss_pred hHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCCC
Confidence 3 3478899999999999999996 4443 467799999999864
No 91
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.35 E-value=3.3e-12 Score=105.81 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=38.4
Q ss_pred CCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCC
Q 027602 116 DLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLE 194 (221)
Q Consensus 116 ~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~ 194 (221)
.+++|++|++++|.+++ +|. ...+++|++|++++|++++ +|..+..+++|++|++++|.++ .+| .+..+++|+
T Consensus 167 ~l~~L~~L~L~~N~l~~--~~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~l~~L~ 240 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYD--VKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLE 240 (317)
T ss_dssp GTTTCCEEECTTSCCCE--EEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTCC
T ss_pred ccCcCCEEECCCCcCcc--ccc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc--chhhHhhcCCCCC
Confidence 34444444444444442 222 1224445555555555542 3333445555555555555553 223 444455555
Q ss_pred EEEcccCCCC
Q 027602 195 HLDFSTTRKM 204 (221)
Q Consensus 195 ~L~l~~N~l~ 204 (221)
+|++++|+++
T Consensus 241 ~L~l~~N~~~ 250 (317)
T 3o53_A 241 HFDLRGNGFH 250 (317)
T ss_dssp EEECTTCCCB
T ss_pred EEEccCCCcc
Confidence 5555555555
No 92
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=1.8e-12 Score=98.37 Aligned_cols=108 Identities=19% Similarity=0.103 Sum_probs=74.5
Q ss_pred CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCC-CCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCC
Q 027602 78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLE-HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG 156 (221)
Q Consensus 78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~-~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~ 156 (221)
..++.+++++ |.+.. +|. +..+. +|++|++++|.+++ + ..+..+++|++|++++|.++
T Consensus 19 ~~L~~L~l~~----------------n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 19 VRDRELDLRG----------------YKIPV-IEN-LGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRIC 77 (176)
T ss_dssp TSCEEEECTT----------------SCCCS-CCC-GGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCC
T ss_pred CCceEEEeeC----------------CCCch-hHH-hhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCccc
Confidence 3578888887 46653 343 44444 78888888888874 4 56777888888888888887
Q ss_pred CCCccccCCCCCCCEEeCcCCCCCCcCCC---cCCCCCCCCEEEcccCCCCCCCCc
Q 027602 157 GVIPHQLGNLSSLRYLDLSRNFLYVVNFG---WLSGLSFLEHLDFSTTRKMGFTDT 209 (221)
Q Consensus 157 g~~p~~l~~l~~L~~L~l~~N~l~~~~~p---~~~~l~~L~~L~l~~N~l~g~ip~ 209 (221)
+..|..+..+++|++|++++|.+. .+| .+..+++|++|++++|.++. +|.
T Consensus 78 ~~~~~~~~~l~~L~~L~L~~N~i~--~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~ 130 (176)
T 1a9n_A 78 RIGEGLDQALPDLTELILTNNSLV--ELGDLDPLASLKSLTYLCILRNPVTN-KKH 130 (176)
T ss_dssp EECSCHHHHCTTCCEEECCSCCCC--CGGGGGGGGGCTTCCEEECCSSGGGG-STT
T ss_pred ccCcchhhcCCCCCEEECCCCcCC--cchhhHhhhcCCCCCEEEecCCCCCC-cHh
Confidence 433333477788888888888874 333 46677888888888888763 443
No 93
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=9.1e-12 Score=94.23 Aligned_cols=90 Identities=21% Similarity=0.221 Sum_probs=77.7
Q ss_pred CcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEc
Q 027602 120 LSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDF 198 (221)
Q Consensus 120 L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l 198 (221)
.+.+++++|.++ .+|..+. ++|++|++++|++++..|..+.++++|++|++++|+++ ...+ .+..+++|++|++
T Consensus 11 ~~~l~~s~n~l~--~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSLA--SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCCS--SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcC--ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEEC
Confidence 578999999999 6888764 88999999999999888888999999999999999997 4444 5678999999999
Q ss_pred ccCCCCCCCCcccccc
Q 027602 199 STTRKMGFTDTKLVSV 214 (221)
Q Consensus 199 ~~N~l~g~ip~~~~~~ 214 (221)
++|+|++..|..+..+
T Consensus 86 ~~N~l~~~~~~~~~~l 101 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNL 101 (170)
T ss_dssp CSSCCCCCCTTTTTTC
T ss_pred CCCccCEeCHHHhcCC
Confidence 9999998777655443
No 94
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=2.3e-12 Score=118.23 Aligned_cols=101 Identities=26% Similarity=0.166 Sum_probs=86.5
Q ss_pred cCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCC
Q 027602 110 VNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLS 188 (221)
Q Consensus 110 ~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~ 188 (221)
.|..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+| .+.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~ 290 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT--SLPAELG 290 (727)
T ss_dssp ------CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS--SCCSSGG
T ss_pred ChhhhccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC--ccChhhc
Confidence 3667888999999999999999 78988889999999999999999 89999999999999999999996 566 788
Q ss_pred CCCCCCEEEcccCCCCCCCCcccccccc
Q 027602 189 GLSFLEHLDFSTTRKMGFTDTKLVSVIT 216 (221)
Q Consensus 189 ~l~~L~~L~l~~N~l~g~ip~~~~~~~~ 216 (221)
.+++|++|+|++|.|+ .||..+..+.+
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~ 317 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGNLCN 317 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTSCTT
T ss_pred CCCCCCEEECCCCCCC-ccChhhhcCCC
Confidence 9999999999999997 78887765543
No 95
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.32 E-value=9.7e-12 Score=103.28 Aligned_cols=91 Identities=19% Similarity=0.160 Sum_probs=63.5
Q ss_pred CCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEE
Q 027602 118 EHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHL 196 (221)
Q Consensus 118 ~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L 196 (221)
++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+| .+..+++|++|
T Consensus 192 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L 268 (330)
T 1xku_A 192 PSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVV 268 (330)
T ss_dssp TTCSEEECTTSCCCE-ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEE
T ss_pred ccCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc--cCChhhccCCCcCEE
Confidence 455666666666664 44566777777788888887777666666777778888888888774 455 66677788888
Q ss_pred EcccCCCCCCCCccc
Q 027602 197 DFSTTRKMGFTDTKL 211 (221)
Q Consensus 197 ~l~~N~l~g~ip~~~ 211 (221)
++++|++++..+..+
T Consensus 269 ~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 269 YLHNNNISAIGSNDF 283 (330)
T ss_dssp ECCSSCCCCCCTTSS
T ss_pred ECCCCcCCccChhhc
Confidence 888888877554443
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.32 E-value=1e-11 Score=101.78 Aligned_cols=85 Identities=26% Similarity=0.273 Sum_probs=55.8
Q ss_pred ccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCC
Q 027602 114 LLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFL 193 (221)
Q Consensus 114 l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L 193 (221)
+..+++|++|++++|.+++ + +.+..+++|++|++++|.+++. ..+..+++|++|++++|.++ . ++.+..+++|
T Consensus 108 l~~l~~L~~L~L~~n~i~~--~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~-~-~~~l~~l~~L 180 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-D-IVPLAGLTKL 180 (291)
T ss_dssp GTTCTTCCEEECTTSCCCC--C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-C-CGGGTTCTTC
T ss_pred hccCCCCCEEECCCCcCCC--C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc-c-chhhcCCCcc
Confidence 6666677777777776663 3 3456667777777777776643 45666777777777777764 2 3336667777
Q ss_pred CEEEcccCCCCC
Q 027602 194 EHLDFSTTRKMG 205 (221)
Q Consensus 194 ~~L~l~~N~l~g 205 (221)
++|++++|.+++
T Consensus 181 ~~L~L~~N~i~~ 192 (291)
T 1h6t_A 181 QNLYLSKNHISD 192 (291)
T ss_dssp CEEECCSSCCCB
T ss_pred CEEECCCCcCCC
Confidence 777777777765
No 97
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.31 E-value=1.5e-11 Score=93.40 Aligned_cols=90 Identities=17% Similarity=0.163 Sum_probs=76.7
Q ss_pred CcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEc
Q 027602 120 LSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDF 198 (221)
Q Consensus 120 L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l 198 (221)
-+.+++++|.++ .+|..+. ++|++|++++|++++..|..+.++++|++|++++|+++ +..+ .+..+++|++|++
T Consensus 14 ~~~l~~~~n~l~--~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 14 QTLVNCQNIRLA--SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SSEEECCSSCCS--SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCCC--ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEEC
Confidence 368999999998 7898775 89999999999999888889999999999999999997 4333 4678999999999
Q ss_pred ccCCCCCCCCcccccc
Q 027602 199 STTRKMGFTDTKLVSV 214 (221)
Q Consensus 199 ~~N~l~g~ip~~~~~~ 214 (221)
++|+|++..+..+..+
T Consensus 89 ~~N~l~~l~~~~~~~l 104 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNL 104 (174)
T ss_dssp CSSCCCCCCTTTTTTC
T ss_pred CCCccceeCHHHhccc
Confidence 9999998666545443
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.31 E-value=2.8e-12 Score=105.87 Aligned_cols=131 Identities=16% Similarity=0.098 Sum_probs=84.1
Q ss_pred CcEEEEEcCCCC------CCC-CCCccccCC-CCCCCccc--cC--ccccCCCCCcEEeCccCCCCCCcccc----cccC
Q 027602 78 GHILELNLRNPF------NYY-VQPDQFEAN-PRSMLVGK--VN--PSLLDLEHLSYLDLSFNDFQGVQIPR----FIGS 141 (221)
Q Consensus 78 ~~v~~l~l~~~~------~~l-~~~~~~~~~-~~n~l~g~--~p--~~l~~l~~L~~L~L~~n~l~g~~ip~----~~~~ 141 (221)
.+++.++++++. ..+ ....+..+. +.|.+.+. ++ ..+..+++|++|++++|.++ .+|. .+..
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~~ 222 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME--TPTGVCAALAAA 222 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC--CHHHHHHHHHHH
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC--chHHHHHHHHhc
Confidence 367788887753 000 011111111 33555542 22 22357778888888888887 3444 2466
Q ss_pred CCCCcEEEccCCcCCCCCccccCCC---CCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEEcccCCCCC-CCCcccccc
Q 027602 142 MGNQKYLNLLGSQFGGVIPHQLGNL---SSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLDFSTTRKMG-FTDTKLVSV 214 (221)
Q Consensus 142 l~~L~~L~l~~N~l~g~~p~~l~~l---~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~l~~N~l~g-~ip~~~~~~ 214 (221)
+++|++|++++|++++..|+.+..+ ++|++|++++|+++ .+| .+. ++|++|++++|++++ +++..+..+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L 296 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEV 296 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCcCCCCchhhhCCCc
Confidence 7888888888888887777777766 68888888888885 455 343 788888888888888 455444333
No 99
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.31 E-value=3.2e-12 Score=101.54 Aligned_cols=105 Identities=13% Similarity=0.136 Sum_probs=64.5
Q ss_pred CCCccccCccccCCCCCcEEeCccCC-CCCCcccccccCCCCCcEEEccC-CcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFND-FQGVQIPRFIGSMGNQKYLNLLG-SQFGGVIPHQLGNLSSLRYLDLSRNFLYV 181 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~-l~g~~ip~~~~~l~~L~~L~l~~-N~l~g~~p~~l~~l~~L~~L~l~~N~l~~ 181 (221)
|++.+..+..+.++++|++|++++|. +++ ..+..+..+++|++|++++ |.+++..+..+.++++|++|++++|.++
T Consensus 41 n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~- 118 (239)
T 2xwt_C 41 THLRTIPSHAFSNLPNISRIYVSIDVTLQQ-LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK- 118 (239)
T ss_dssp CCCSEECTTTTTTCTTCCEEEEECCSSCCE-ECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-
T ss_pred CcceEECHHHccCCCCCcEEeCCCCCCcce-eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-
Confidence 46665555566667777777777775 653 2223566667777777776 6666444455666677777777777664
Q ss_pred cCCCcCCCCCCCC---EEEcccC-CCCCCCCccc
Q 027602 182 VNFGWLSGLSFLE---HLDFSTT-RKMGFTDTKL 211 (221)
Q Consensus 182 ~~~p~~~~l~~L~---~L~l~~N-~l~g~ip~~~ 211 (221)
.+|.+..+++|+ +|++++| .+++..+..+
T Consensus 119 -~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~ 151 (239)
T 2xwt_C 119 -MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151 (239)
T ss_dssp -SCCCCTTCCBCCSEEEEEEESCTTCCEECTTTT
T ss_pred -cccccccccccccccEEECCCCcchhhcCcccc
Confidence 255556666666 7777777 6655444333
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.30 E-value=3.1e-12 Score=105.61 Aligned_cols=108 Identities=9% Similarity=-0.081 Sum_probs=69.2
Q ss_pred CCCccccC----ccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCC--Cc--cccCCCCCCCEEeCc
Q 027602 104 SMLVGKVN----PSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGV--IP--HQLGNLSSLRYLDLS 175 (221)
Q Consensus 104 n~l~g~~p----~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~--~p--~~l~~l~~L~~L~l~ 175 (221)
|.+.+..+ ..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++.+. ++ ..++.+++|++|+++
T Consensus 127 n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls 205 (310)
T 4glp_A 127 VSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR 205 (310)
T ss_dssp CCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred ccccchhhhhHHHHhhhccCCCEEEeeCCCcch-hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence 55555433 223456677777777777765 4556666777777777777776542 22 223566777777777
Q ss_pred CCCCCCcCCCc-----CCCCCCCCEEEcccCCCCCCCCcccccc
Q 027602 176 RNFLYVVNFGW-----LSGLSFLEHLDFSTTRKMGFTDTKLVSV 214 (221)
Q Consensus 176 ~N~l~~~~~p~-----~~~l~~L~~L~l~~N~l~g~ip~~~~~~ 214 (221)
+|+++ .++. +..+++|++|++++|++++.+|..+...
T Consensus 206 ~N~l~--~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 206 NTGME--TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp SSCCC--CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCC--chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 77774 2331 3467889999999999998877665443
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.29 E-value=2e-11 Score=98.75 Aligned_cols=64 Identities=27% Similarity=0.324 Sum_probs=29.1
Q ss_pred ccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCCCCC
Q 027602 139 IGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMGF 206 (221)
Q Consensus 139 ~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l~g~ 206 (221)
+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .++.+..+++|++|++++|++++.
T Consensus 124 l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~--~~~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEIT--NTGGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCC--BCTTSTTCCCCCEEEEEEEEEECC
T ss_pred hcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCc--chHHhccCCCCCEEeCCCCcccCC
Confidence 4444444444444444443 22 3444444555555554443 113444444555555555554443
No 102
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.29 E-value=8.3e-12 Score=103.83 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=81.8
Q ss_pred CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602 102 PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV 181 (221)
Q Consensus 102 ~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~ 181 (221)
+.|.+.+..+..+..+++|++|++++|.+++ ..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++.
T Consensus 201 ~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp CSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC-CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCc-CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence 3467777777788888889999999998886 55567888888999999998887 788888888889999999888862
Q ss_pred cCCCcCCC------CCCCCEEEcccCCCC--CCCCcccc
Q 027602 182 VNFGWLSG------LSFLEHLDFSTTRKM--GFTDTKLV 212 (221)
Q Consensus 182 ~~~p~~~~------l~~L~~L~l~~N~l~--g~ip~~~~ 212 (221)
.....+.. ..+|+.+++++|.+. +..|..+.
T Consensus 279 ~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp CCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred cChhHccccccccccccccceEeecCcccccccCccccc
Confidence 22223433 356888899988887 44444443
No 103
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.29 E-value=4.3e-12 Score=105.09 Aligned_cols=115 Identities=17% Similarity=0.057 Sum_probs=94.7
Q ss_pred CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccc-cCCCCCcEEEccCCcCC
Q 027602 78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFI-GSMGNQKYLNLLGSQFG 156 (221)
Q Consensus 78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~-~~l~~L~~L~l~~N~l~ 156 (221)
..++.+++++ |.+.+..+..+..+++|++|++++|.+++ ..|..+ ..+++|++|++++|.++
T Consensus 120 ~~L~~L~l~~----------------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 120 QGKKNIYLAN----------------NKITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp SSCEEEECCS----------------SCCCSGGGBCTGGGSSEEEEECTTSCCCE-EEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCEEECCC----------------CCCCCccchhhhccCCCCEEECCCCCCCc-ccHHHHhhccCcCCEEECCCCcCc
Confidence 3567777776 68888888889999999999999999997 556665 47899999999999998
Q ss_pred CCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602 157 GVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMGFTDTKLVS 213 (221)
Q Consensus 157 g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 213 (221)
+. | ....+++|++|++++|+++ +..+.+..+++|++|++++|++++ +|..+..
T Consensus 183 ~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~ 235 (317)
T 3o53_A 183 DV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRF 235 (317)
T ss_dssp EE-E-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE-ECTTCCC
T ss_pred cc-c-cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccc-hhhHhhc
Confidence 54 4 3446899999999999997 444578889999999999999994 7765533
No 104
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.29 E-value=4.4e-12 Score=111.29 Aligned_cols=141 Identities=15% Similarity=0.070 Sum_probs=106.7
Q ss_pred ccccceEEcCCCCcEEEEEcCCCC-CCCC------CCccccC-CCCCCCccccCcccc-CCCCCcEEeCccCCCCCCccc
Q 027602 66 CLWAGVICDNVTGHILELNLRNPF-NYYV------QPDQFEA-NPRSMLVGKVNPSLL-DLEHLSYLDLSFNDFQGVQIP 136 (221)
Q Consensus 66 c~w~gv~c~~~~~~v~~l~l~~~~-~~l~------~~~~~~~-~~~n~l~g~~p~~l~-~l~~L~~L~L~~n~l~g~~ip 136 (221)
|.+.++.|.. -..++.++++++. ..+. ...+..+ .+.|.+.+..|..+. .+++|+.|++++|.+++ +|
T Consensus 109 N~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~--~~ 185 (487)
T 3oja_A 109 NNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VK 185 (487)
T ss_dssp SCCCCEEECC-CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE--EE
T ss_pred CcCCCCCccc-cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc--cc
Confidence 4556666654 3578889988764 1110 1111112 255899998888886 79999999999999995 44
Q ss_pred ccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCCC-CCCCcccc
Q 027602 137 RFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKM-GFTDTKLV 212 (221)
Q Consensus 137 ~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l~-g~ip~~~~ 212 (221)
. ...+++|++|++++|.+++ +|+.+..+++|++|++++|.++ +.++.+..+++|++|++++|.++ +.+|..+.
T Consensus 186 ~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 186 G-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp C-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred c-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 4 4469999999999999996 5556899999999999999997 43337888999999999999998 66665443
No 105
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=4.1e-12 Score=96.42 Aligned_cols=103 Identities=18% Similarity=0.168 Sum_probs=87.7
Q ss_pred cEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCccccc-ccCCCCCcEEEccCCcCCC
Q 027602 79 HILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRF-IGSMGNQKYLNLLGSQFGG 157 (221)
Q Consensus 79 ~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~-~~~l~~L~~L~l~~N~l~g 157 (221)
.++.+++++ |.+.+. +.+..+++|++|++++|.+++ +|+. +..+++|++|++++|.++
T Consensus 43 ~L~~L~Ls~----------------N~l~~~--~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~i~- 101 (176)
T 1a9n_A 43 QFDAIDFSD----------------NEIRKL--DGFPLLRRLKTLLVNNNRICR--IGEGLDQALPDLTELILTNNSLV- 101 (176)
T ss_dssp CCSEEECCS----------------SCCCEE--CCCCCCSSCCEEECCSSCCCE--ECSCHHHHCTTCCEEECCSCCCC-
T ss_pred CCCEEECCC----------------CCCCcc--cccccCCCCCEEECCCCcccc--cCcchhhcCCCCCEEECCCCcCC-
Confidence 678888887 588775 678999999999999999994 5654 488999999999999996
Q ss_pred CCcc--ccCCCCCCCEEeCcCCCCCCcCCC-c----CCCCCCCCEEEcccCCCC
Q 027602 158 VIPH--QLGNLSSLRYLDLSRNFLYVVNFG-W----LSGLSFLEHLDFSTTRKM 204 (221)
Q Consensus 158 ~~p~--~l~~l~~L~~L~l~~N~l~~~~~p-~----~~~l~~L~~L~l~~N~l~ 204 (221)
.+|. .+..+++|++|++++|.++ .+| . +..+++|++|++++|.+.
T Consensus 102 ~~~~~~~l~~l~~L~~L~l~~N~i~--~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 102 ELGDLDPLASLKSLTYLCILRNPVT--NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CGGGGGGGGGCTTCCEEECCSSGGG--GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cchhhHhhhcCCCCCEEEecCCCCC--CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 5776 7889999999999999995 445 3 778999999999999764
No 106
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.26 E-value=4e-11 Score=98.99 Aligned_cols=96 Identities=20% Similarity=0.291 Sum_probs=66.5
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+.+. +.+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++. +. +..+++|++|++++|.++ .
T Consensus 95 n~l~~~--~~~~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~--~ 165 (308)
T 1h6u_A 95 NPLKNV--SAIAGLQSIKTLDLTSTQITD--VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVS--D 165 (308)
T ss_dssp CCCSCC--GGGTTCTTCCEEECTTSCCCC--CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCC--C
T ss_pred CcCCCc--hhhcCCCCCCEEECCCCCCCC--chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCC--C
Confidence 455442 246777777777777777774 443 67777778888877777643 32 677778888888888775 3
Q ss_pred CCcCCCCCCCCEEEcccCCCCCCCC
Q 027602 184 FGWLSGLSFLEHLDFSTTRKMGFTD 208 (221)
Q Consensus 184 ~p~~~~l~~L~~L~l~~N~l~g~ip 208 (221)
++.+..+++|++|++++|++++..+
T Consensus 166 ~~~l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 166 LTPLANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp CGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred ChhhcCCCCCCEEECCCCccCcChh
Confidence 4447777888888888888876443
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=2.1e-11 Score=108.93 Aligned_cols=92 Identities=23% Similarity=0.234 Sum_probs=82.9
Q ss_pred CCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEc
Q 027602 119 HLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDF 198 (221)
Q Consensus 119 ~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l 198 (221)
.|+.|++++|.++ .+|. ++.+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|.+..+++|++|++
T Consensus 442 ~L~~L~Ls~n~l~--~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~--~lp~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLT--VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE--NVDGVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCS--SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC--CCGGGTTCSSCCEEEC
T ss_pred CceEEEecCCCCC--CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC--CCcccCCCCCCcEEEC
Confidence 5788999999999 5787 999999999999999999 89999999999999999999997 3778999999999999
Q ss_pred ccCCCCCCC-Ccccccccc
Q 027602 199 STTRKMGFT-DTKLVSVIT 216 (221)
Q Consensus 199 ~~N~l~g~i-p~~~~~~~~ 216 (221)
++|+|++.+ |..+..+.+
T Consensus 516 s~N~l~~~~~p~~l~~l~~ 534 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPR 534 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTT
T ss_pred CCCCCCCCCCcHHHhcCCC
Confidence 999999987 887765543
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.25 E-value=5.8e-11 Score=97.29 Aligned_cols=96 Identities=23% Similarity=0.272 Sum_probs=80.9
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+.+..+ +..+++|++|++++|.+++ +|. +..+++|++|++++|++++ + +.+..+++|++|++++|.++ .
T Consensus 78 n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~--~ 148 (291)
T 1h6t_A 78 NKLTDIKP--LANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT--D 148 (291)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCC--C
T ss_pred CccCCCcc--cccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCC--c
Confidence 67776544 8899999999999999984 444 8889999999999999985 3 46888999999999999996 4
Q ss_pred CCcCCCCCCCCEEEcccCCCCCCCC
Q 027602 184 FGWLSGLSFLEHLDFSTTRKMGFTD 208 (221)
Q Consensus 184 ~p~~~~l~~L~~L~l~~N~l~g~ip 208 (221)
++.+..+++|++|++++|++++..|
T Consensus 149 ~~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 149 ITVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp CGGGGGCTTCSEEECCSSCCCCCGG
T ss_pred chhhccCCCCCEEEccCCccccchh
Confidence 5778889999999999999998655
No 109
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.25 E-value=3.9e-11 Score=99.05 Aligned_cols=121 Identities=21% Similarity=0.279 Sum_probs=74.2
Q ss_pred CcEEEEEcCCCC-CCCC----CCccccCC-CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEcc
Q 027602 78 GHILELNLRNPF-NYYV----QPDQFEAN-PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLL 151 (221)
Q Consensus 78 ~~v~~l~l~~~~-~~l~----~~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~ 151 (221)
.+++.++++++. ..+. ...+..+. +.|.+.+. +. +..+++|++|++++|.+++ ++. +..+++|++|+++
T Consensus 85 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 85 TKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITN--ISP-LAGLTNLQYLSIG 159 (308)
T ss_dssp CSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECC
T ss_pred CCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCc--Ccc-ccCCCCccEEEcc
Confidence 467777777654 1110 01111111 33566543 32 6777778888888887774 443 6677777777777
Q ss_pred CCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCCCCCC
Q 027602 152 GSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMGFT 207 (221)
Q Consensus 152 ~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l~g~i 207 (221)
+|.+++ ++. +..+++|++|++++|.++ .++.+..+++|++|++++|++++..
T Consensus 160 ~n~l~~-~~~-l~~l~~L~~L~l~~n~l~--~~~~l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 160 NAQVSD-LTP-LANLSKLTTLKADDNKIS--DISPLASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp SSCCCC-CGG-GTTCTTCCEEECCSSCCC--CCGGGGGCTTCCEEECTTSCCCBCG
T ss_pred CCcCCC-Chh-hcCCCCCCEEECCCCccC--cChhhcCCCCCCEEEccCCccCccc
Confidence 777764 333 677777777777777774 3444666777777777777776644
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.24 E-value=4.1e-11 Score=107.78 Aligned_cols=119 Identities=21% Similarity=0.174 Sum_probs=77.8
Q ss_pred CcEEEEEcCCCC-CCCC----CCccccC-CCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEcc
Q 027602 78 GHILELNLRNPF-NYYV----QPDQFEA-NPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLL 151 (221)
Q Consensus 78 ~~v~~l~l~~~~-~~l~----~~~~~~~-~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~ 151 (221)
.+++.|+|+++. ..+. ...+..+ .+.|.+.+ +| .+..+++|+.|+|++|.+++ + +.+..+++|+.|+|+
T Consensus 65 ~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls 139 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLG 139 (605)
T ss_dssp TTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC--C-GGGGGCTTCSEEECC
T ss_pred CCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC--C-ccccCCCccCEEECC
Confidence 467888887753 1110 0011111 13355554 23 57777788888888888774 3 346777888888888
Q ss_pred CCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCCCC
Q 027602 152 GSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMG 205 (221)
Q Consensus 152 ~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l~g 205 (221)
+|.+++. ..+..+++|+.|+|++|.+. +..| +..+++|++|+|++|+|++
T Consensus 140 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 140 NNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp SSCCCCC--GGGGSCTTCSEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCB
T ss_pred CCccCCc--hhhcccCCCCEEECcCCcCC-Cchh-hccCCCCCEEECcCCCCCC
Confidence 8887754 56777888888888888875 3334 7778888888888888876
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.23 E-value=6.2e-11 Score=95.78 Aligned_cols=93 Identities=24% Similarity=0.191 Sum_probs=72.0
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+.+..+ +..+++|++|++++|++++ +|... . ++|++|++++|++++ ++ .+..+++|++|++++|+++ .
T Consensus 73 N~i~~~~~--l~~l~~L~~L~L~~N~l~~--l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~--~ 142 (263)
T 1xeu_A 73 NQISDLSP--LKDLTKLEELSVNRNRLKN--LNGIP-S-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLK--S 142 (263)
T ss_dssp SCCCCCGG--GTTCSSCCEEECCSSCCSC--CTTCC-C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCC--B
T ss_pred CccCCChh--hccCCCCCEEECCCCccCC--cCccc-c-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCC--C
Confidence 56665444 7888888888888888884 55433 3 788888888888875 33 5888889999999999885 4
Q ss_pred CCcCCCCCCCCEEEcccCCCCCC
Q 027602 184 FGWLSGLSFLEHLDFSTTRKMGF 206 (221)
Q Consensus 184 ~p~~~~l~~L~~L~l~~N~l~g~ 206 (221)
++.+..+++|++|++++|++++.
T Consensus 143 ~~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 143 IVMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CGGGGGCTTCCEEECTTSCCCBC
T ss_pred ChHHccCCCCCEEECCCCcCcch
Confidence 56777888999999999988876
No 112
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.22 E-value=5.2e-11 Score=103.54 Aligned_cols=88 Identities=24% Similarity=0.341 Sum_probs=44.9
Q ss_pred ccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCC
Q 027602 114 LLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFL 193 (221)
Q Consensus 114 l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L 193 (221)
+..+++|+.|++++|.+++ ++. +..+++|++|++++|.+++..| +..+++|++|++++|+++ .++.+..+++|
T Consensus 283 ~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~--~~~~l~~l~~L 355 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLED--ISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS--DVSSLANLTNI 355 (466)
T ss_dssp GTTCTTCSEEECCSSCCSC--CGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC--CCGGGTTCTTC
T ss_pred ccCCCccCeEEcCCCcccC--chh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC--CchhhccCCCC
Confidence 4555555555555555553 222 4455555555555555554333 444555555555555553 22444445555
Q ss_pred CEEEcccCCCCCCCC
Q 027602 194 EHLDFSTTRKMGFTD 208 (221)
Q Consensus 194 ~~L~l~~N~l~g~ip 208 (221)
++|++++|+++|.+|
T Consensus 356 ~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 356 NWLSAGHNQISDLTP 370 (466)
T ss_dssp CEEECCSSCCCBCGG
T ss_pred CEEeCCCCccCccch
Confidence 555555555555444
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.21 E-value=1.5e-11 Score=109.83 Aligned_cols=89 Identities=10% Similarity=0.077 Sum_probs=57.1
Q ss_pred CCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCC-------CEEeCcCCCCCCcCCC-cCC
Q 027602 117 LEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSL-------RYLDLSRNFLYVVNFG-WLS 188 (221)
Q Consensus 117 l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L-------~~L~l~~N~l~~~~~p-~~~ 188 (221)
+++|++|++++|.++ .+|. +. ++|++|++++|.++ .+|. +.. +| ++|++++|.++ .+| .+.
T Consensus 159 l~~L~~L~Ls~N~L~--~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~--~lp~~l~ 227 (571)
T 3cvr_A 159 PTSLEVLSVRNNQLT--FLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT--HIPENIL 227 (571)
T ss_dssp CTTCCEEECCSSCCS--CCCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC--CCCGGGG
T ss_pred CCCcCEEECCCCCCC--Ccch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce--ecCHHHh
Confidence 455566666666665 3455 43 56666666666666 5555 433 55 77777777775 455 566
Q ss_pred CCCCCCEEEcccCCCCCCCCcccccccc
Q 027602 189 GLSFLEHLDFSTTRKMGFTDTKLVSVIT 216 (221)
Q Consensus 189 ~l~~L~~L~l~~N~l~g~ip~~~~~~~~ 216 (221)
.+++|++|++++|+++|.+|..+..+..
T Consensus 228 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 228 SLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp GSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred cCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 6888888888888888888777666544
No 114
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.21 E-value=4.6e-13 Score=111.26 Aligned_cols=100 Identities=20% Similarity=0.159 Sum_probs=60.8
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCc-ccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCC-CCCC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQ-IPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRN-FLYV 181 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~-ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N-~l~~ 181 (221)
|.+.+..+. +..+++|++|++++|.+++ . +|..+..+++|++|++++|.+++..|..++.+++|++|++++| .++.
T Consensus 80 n~l~~~~~~-~~~~~~L~~L~L~~~~l~~-~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~ 157 (336)
T 2ast_B 80 SFMDQPLAE-HFSPFRVQHMDLSNSVIEV-STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE 157 (336)
T ss_dssp CEECSCCCS-CCCCBCCCEEECTTCEECH-HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH
T ss_pred ccccccchh-hccCCCCCEEEccCCCcCH-HHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH
Confidence 444444443 4456667777777766664 3 5666666667777777777666666666666666777777666 4542
Q ss_pred cCCC-cCCCCCCCCEEEcccC-CCCC
Q 027602 182 VNFG-WLSGLSFLEHLDFSTT-RKMG 205 (221)
Q Consensus 182 ~~~p-~~~~l~~L~~L~l~~N-~l~g 205 (221)
..++ .+..+++|++|++++| .+++
T Consensus 158 ~~l~~~~~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 158 FALQTLLSSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp HHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred HHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence 1234 3445666666666666 6654
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.20 E-value=5.7e-11 Score=106.86 Aligned_cols=120 Identities=21% Similarity=0.245 Sum_probs=94.1
Q ss_pred CcEEEEEcCCCC-CCCC----CCccccC-CCCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEcc
Q 027602 78 GHILELNLRNPF-NYYV----QPDQFEA-NPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLL 151 (221)
Q Consensus 78 ~~v~~l~l~~~~-~~l~----~~~~~~~-~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~ 151 (221)
.+++.|+|+++. ..+. ...+..+ .+.|.+.+ + +.+..+++|+.|+|++|.+++ + ..+..+++|+.|+|+
T Consensus 87 ~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 87 KNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTLSLE 161 (605)
T ss_dssp TTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC--C-GGGGSCTTCSEEECC
T ss_pred CCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC--c-hhhcccCCCCEEECc
Confidence 467788887764 1111 1111111 13467765 3 458899999999999999996 4 668899999999999
Q ss_pred CCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCCCCC
Q 027602 152 GSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRKMGF 206 (221)
Q Consensus 152 ~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l~g~ 206 (221)
+|.+++..| +..+++|+.|+|++|.++ .++.+..+++|+.|++++|++++.
T Consensus 162 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~--~l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 162 DNQISDIVP--LAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCC--BCGGGTTCTTCSEEECCSEEEECC
T ss_pred CCcCCCchh--hccCCCCCEEECcCCCCC--CChHHccCCCCCEEEccCCcCcCC
Confidence 999997655 899999999999999996 467889999999999999999886
No 116
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.20 E-value=4.8e-11 Score=103.78 Aligned_cols=95 Identities=21% Similarity=0.329 Sum_probs=82.1
Q ss_pred CCCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602 102 PRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV 181 (221)
Q Consensus 102 ~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~ 181 (221)
+.|.+.+..+ +..+++|+.|++++|.+++ ..| +..+++|++|++++|.+++. +.+..+++|++|++++|+++
T Consensus 295 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~- 366 (466)
T 1o6v_A 295 NENQLEDISP--ISNLKNLTYLTLYFNNISD-ISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS- 366 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCSEEECCSSCCSC-CGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-
T ss_pred CCCcccCchh--hcCCCCCCEEECcCCcCCC-chh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccC-
Confidence 3467776544 7899999999999999997 444 78899999999999999864 47899999999999999997
Q ss_pred cCCCcCCCCCCCCEEEcccCCCCC
Q 027602 182 VNFGWLSGLSFLEHLDFSTTRKMG 205 (221)
Q Consensus 182 ~~~p~~~~l~~L~~L~l~~N~l~g 205 (221)
+.+| +..+++|++|++++|++++
T Consensus 367 ~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 367 DLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp BCGG-GTTCTTCCEEECCCEEEEC
T ss_pred ccch-hhcCCCCCEEeccCCcccC
Confidence 5555 8889999999999999998
No 117
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.19 E-value=8e-11 Score=98.14 Aligned_cols=97 Identities=26% Similarity=0.285 Sum_probs=74.8
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+.+..+ +..+++|++|++++|.+++ + +.+..+++|++|++++|.+++ + +.+..+++|++|++++|.++ ..
T Consensus 231 n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~-~~ 302 (347)
T 4fmz_A 231 NKITDLSP--LANLSQLTWLEIGTNQISD--I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLG-NE 302 (347)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC-GG
T ss_pred CccCCCcc--hhcCCCCCEEECCCCccCC--C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCC-Cc
Confidence 56654433 7788888888888888884 4 457788888888888888875 3 35778888889999888886 44
Q ss_pred CC-cCCCCCCCCEEEcccCCCCCCCC
Q 027602 184 FG-WLSGLSFLEHLDFSTTRKMGFTD 208 (221)
Q Consensus 184 ~p-~~~~l~~L~~L~l~~N~l~g~ip 208 (221)
.+ .+..+++|++|++++|++++..|
T Consensus 303 ~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 303 DMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp GHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred ChhHhhccccCCEEEccCCccccccC
Confidence 44 67778889999999999888766
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.18 E-value=1.6e-10 Score=100.58 Aligned_cols=84 Identities=23% Similarity=0.300 Sum_probs=42.9
Q ss_pred ccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCC
Q 027602 114 LLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFL 193 (221)
Q Consensus 114 l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L 193 (221)
+..+++|++|++++|.+++ +| ++.+++|++|++++|++++ +| ++.+++|++|++++|++++ ++ +..+++|
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~--l~-l~~l~~L 150 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE--ID-VSHNTQL 150 (457)
T ss_dssp CTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC--CC-CTTCTTC
T ss_pred cccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce--ec-cccCCcC
Confidence 4455555555555555553 22 4455555555555555553 22 4555555555555555541 22 4445555
Q ss_pred CEEEcccCCCCCCC
Q 027602 194 EHLDFSTTRKMGFT 207 (221)
Q Consensus 194 ~~L~l~~N~l~g~i 207 (221)
++|++++|+..|.+
T Consensus 151 ~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 151 TELDCHLNKKITKL 164 (457)
T ss_dssp CEEECTTCSCCCCC
T ss_pred CEEECCCCCccccc
Confidence 55555555544444
No 119
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.17 E-value=1.1e-10 Score=97.32 Aligned_cols=101 Identities=15% Similarity=0.249 Sum_probs=82.8
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+.+..+ +..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ + +.+..+++|++|++++|.++ .
T Consensus 209 n~l~~~~~--~~~~~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~--~ 279 (347)
T 4fmz_A 209 NQITDITP--VANMTRLNSLKIGNNKITD--LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQIS--D 279 (347)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCC--C
T ss_pred CCCCCCch--hhcCCcCCEEEccCCccCC--Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccC--C
Confidence 55554433 7888999999999999984 555 8889999999999999885 3 46888999999999999985 4
Q ss_pred CCcCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602 184 FGWLSGLSFLEHLDFSTTRKMGFTDTKLVS 213 (221)
Q Consensus 184 ~p~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 213 (221)
++.+..+++|++|++++|++++..|..+..
T Consensus 280 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 309 (347)
T 4fmz_A 280 ISVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309 (347)
T ss_dssp CGGGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred ChhhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence 577888999999999999999887765543
No 120
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=7.8e-11 Score=98.45 Aligned_cols=87 Identities=15% Similarity=0.087 Sum_probs=75.8
Q ss_pred cEEeCccC-CCCCCcccccccCCCCCcEEEccC-CcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEEE
Q 027602 121 SYLDLSFN-DFQGVQIPRFIGSMGNQKYLNLLG-SQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHLD 197 (221)
Q Consensus 121 ~~L~L~~n-~l~g~~ip~~~~~l~~L~~L~l~~-N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L~ 197 (221)
..++.+++ +++ .+|. +..+++|++|+|++ |.+++..|..|.++++|++|+|++|+++ +.+| .|.++++|++|+
T Consensus 11 ~~v~~~~~n~l~--~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 11 SGLRCTRDGALD--SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp SCEECCSSCCCT--TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEE
T ss_pred CEEEcCCCCCCC--ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEe
Confidence 35688888 898 6899 99999999999996 9999877788999999999999999997 5555 788999999999
Q ss_pred cccCCCCCCCCccc
Q 027602 198 FSTTRKMGFTDTKL 211 (221)
Q Consensus 198 l~~N~l~g~ip~~~ 211 (221)
|++|+|++..|..+
T Consensus 87 l~~N~l~~~~~~~~ 100 (347)
T 2ifg_A 87 LSFNALESLSWKTV 100 (347)
T ss_dssp CCSSCCSCCCSTTT
T ss_pred CCCCccceeCHHHc
Confidence 99999998655444
No 121
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.17 E-value=2.2e-10 Score=99.58 Aligned_cols=94 Identities=19% Similarity=0.238 Sum_probs=54.4
Q ss_pred CCCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC-
Q 027602 103 RSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV- 181 (221)
Q Consensus 103 ~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~- 181 (221)
.|.+.+ +| ++.++++|++|++++|++++ +|..+ ++|++|++++|.+++ +| .++++++|++|++++|.+++
T Consensus 140 ~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~--lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l 210 (454)
T 1jl5_A 140 NNQLEK-LP-ELQNSSFLKIIDVDNNSLKK--LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL 210 (454)
T ss_dssp SSCCSS-CC-CCTTCTTCCEEECCSSCCSC--CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC
T ss_pred CCCCCC-Cc-ccCCCCCCCEEECCCCcCcc--cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC
Confidence 356665 66 47777777777777777773 45432 355666666666554 44 35555555555555444431
Q ss_pred -----------------cCCCcCCCCCCCCEEEcccCCCCC
Q 027602 182 -----------------VNFGWLSGLSFLEHLDFSTTRKMG 205 (221)
Q Consensus 182 -----------------~~~p~~~~l~~L~~L~l~~N~l~g 205 (221)
..+|.+..+++|++|++++|++++
T Consensus 211 ~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 211 PDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred CCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc
Confidence 134445556666666666666665
No 122
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.17 E-value=1.8e-11 Score=110.47 Aligned_cols=137 Identities=17% Similarity=0.084 Sum_probs=88.0
Q ss_pred CCCCCCCCcccccceE--------EcCCCCcEEEEEcCCCC-CCCCC---CccccCC-CCCCCccccCccccCCCCCcEE
Q 027602 57 ASWIGDGDCCLWAGVI--------CDNVTGHILELNLRNPF-NYYVQ---PDQFEAN-PRSMLVGKVNPSLLDLEHLSYL 123 (221)
Q Consensus 57 ~~W~~~~~~c~w~gv~--------c~~~~~~v~~l~l~~~~-~~l~~---~~~~~~~-~~n~l~g~~p~~l~~l~~L~~L 123 (221)
..|....++|.|+|.. |.. ..++.+++++.. ..++. ..+..+. +.|++. .+|. .+++|++|
T Consensus 13 ~~W~~~~~~~~~~~r~~~~~~~~~c~~--~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~-~lp~---~l~~L~~L 86 (622)
T 3g06_A 13 SAWRRAAPAEESRGRAAVVQKMRACLN--NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT-SLPA---LPPELRTL 86 (622)
T ss_dssp HHHHHTCCGGGHHHHHHHHHHHHHHHH--HCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCS-CCCC---CCTTCCEE
T ss_pred HHHHhcCCcchhccccccCcccccccC--CCCcEEEecCCCcCccChhhCCCCcEEEecCCCCC-CCCC---cCCCCCEE
Confidence 4566667889996632 322 357888888753 11100 1111111 335555 4554 46788888
Q ss_pred eCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEEcccCCC
Q 027602 124 DLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLDFSTTRK 203 (221)
Q Consensus 124 ~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~l~~N~l 203 (221)
++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|++|++++|+++ .+|. .+++|++|++++|++
T Consensus 87 ~Ls~N~l~--~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~--~lp~--~l~~L~~L~Ls~N~l 153 (622)
T 3g06_A 87 EVSGNQLT--SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT--SLPV--LPPGLQELSVSDNQL 153 (622)
T ss_dssp EECSCCCS--CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS--CCCC--CCTTCCEEECCSSCC
T ss_pred EcCCCcCC--cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC--cCCC--CCCCCCEEECcCCcC
Confidence 88888887 5666 56788888888888874 554 5678888888888885 3553 247899999999998
Q ss_pred CCCCCccccc
Q 027602 204 MGFTDTKLVS 213 (221)
Q Consensus 204 ~g~ip~~~~~ 213 (221)
++ +|..+..
T Consensus 154 ~~-l~~~~~~ 162 (622)
T 3g06_A 154 AS-LPALPSE 162 (622)
T ss_dssp SC-CCCCCTT
T ss_pred CC-cCCccCC
Confidence 87 4443333
No 123
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.15 E-value=3.5e-10 Score=98.38 Aligned_cols=98 Identities=21% Similarity=0.221 Sum_probs=71.2
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|...+.+ .+..+++|+.|++++|.+++ +| +..+++|++|++++|.+++. .++.+++|++|++++|+++ +
T Consensus 158 n~~~~~~--~~~~l~~L~~L~ls~n~l~~--l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~-~- 226 (457)
T 3bz5_A 158 NKKITKL--DVTPQTQLTTLDCSFNKITE--LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-E- 226 (457)
T ss_dssp CSCCCCC--CCTTCTTCCEEECCSSCCCC--CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS-C-
T ss_pred CCccccc--ccccCCcCCEEECCCCccce--ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc-c-
Confidence 4444555 36677888888888888884 44 67778888888888888754 3777888888888888886 3
Q ss_pred CCcCCCCCCCCEEEcccCCCCCCCCccccc
Q 027602 184 FGWLSGLSFLEHLDFSTTRKMGFTDTKLVS 213 (221)
Q Consensus 184 ~p~~~~l~~L~~L~l~~N~l~g~ip~~~~~ 213 (221)
+| +..+++|++|++++|+++|..+..+..
T Consensus 227 ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~ 255 (457)
T 3bz5_A 227 ID-VTPLTQLTYFDCSVNPLTELDVSTLSK 255 (457)
T ss_dssp CC-CTTCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred cC-ccccCCCCEEEeeCCcCCCcCHHHCCC
Confidence 55 667788888888888888865544443
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=1e-13 Score=107.39 Aligned_cols=100 Identities=21% Similarity=0.165 Sum_probs=80.5
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVN 183 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~ 183 (221)
|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|++|++++|.++...
T Consensus 58 n~l~~-l~-~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~ 131 (198)
T 1ds9_A 58 NNIEK-IS-SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWG 131 (198)
T ss_dssp EEESC-CC-CHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHH
T ss_pred CCCcc-cc-ccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchh
Confidence 56666 66 7888899999999999988 678777777889999999999885 55 5778889999999999986212
Q ss_pred C-CcCCCCCCCCEEEcccCCCCCCCCc
Q 027602 184 F-GWLSGLSFLEHLDFSTTRKMGFTDT 209 (221)
Q Consensus 184 ~-p~~~~l~~L~~L~l~~N~l~g~ip~ 209 (221)
. +.+..+++|++|++++|.+++.+|.
T Consensus 132 ~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 132 EIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred HHHHHhcCCCCCEEEecCCcccccccc
Confidence 1 2577899999999999999887664
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=9.7e-14 Score=107.49 Aligned_cols=87 Identities=23% Similarity=0.192 Sum_probs=52.7
Q ss_pred cccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCC
Q 027602 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSF 192 (221)
Q Consensus 113 ~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~ 192 (221)
.+..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|.+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~--~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~--~l~~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE--KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA--SLSGIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEES--CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC--CHHHHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCc--ccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC--cCCccccCCC
Confidence 5566666666666666666 345 5556666666666666665 45555555566666666666664 2445555566
Q ss_pred CCEEEcccCCCCC
Q 027602 193 LEHLDFSTTRKMG 205 (221)
Q Consensus 193 L~~L~l~~N~l~g 205 (221)
|++|++++|++++
T Consensus 117 L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 117 LRVLYMSNNKITN 129 (198)
T ss_dssp SSEEEESEEECCC
T ss_pred CCEEECCCCcCCc
Confidence 6666666666654
No 126
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.11 E-value=5.6e-10 Score=97.06 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=67.6
Q ss_pred CCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCCCCCCCEEE
Q 027602 118 EHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSGLSFLEHLD 197 (221)
Q Consensus 118 ~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~l~~L~~L~ 197 (221)
++|++|++++|.++ .+| .++.+++|++|++++|++++ +|..+ .+|++|++++|.++ .+|.+..+++|++|+
T Consensus 131 ~~L~~L~L~~n~l~--~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~--~l~~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE--KLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLE--ELPELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCS--SCC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCS--SCCCCTTCTTCCEEE
T ss_pred CCCCEEECcCCCCC--CCc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCC--cCccccCCCCCCEEE
Confidence 68889999999888 467 58889999999999999885 66543 58999999999986 367888899999999
Q ss_pred cccCCCCCCCCcc
Q 027602 198 FSTTRKMGFTDTK 210 (221)
Q Consensus 198 l~~N~l~g~ip~~ 210 (221)
+++|++++ +|..
T Consensus 202 l~~N~l~~-l~~~ 213 (454)
T 1jl5_A 202 ADNNSLKK-LPDL 213 (454)
T ss_dssp CCSSCCSS-CCCC
T ss_pred CCCCcCCc-CCCC
Confidence 99999987 4443
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.11 E-value=1.7e-10 Score=96.81 Aligned_cols=98 Identities=17% Similarity=0.200 Sum_probs=69.8
Q ss_pred ccccceEEcCCC---------CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCCCCCCccc
Q 027602 66 CLWAGVICDNVT---------GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIP 136 (221)
Q Consensus 66 c~w~gv~c~~~~---------~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip 136 (221)
|.|..|.|.+.. ..++.|+|++ |++...-+..|.++++|++|+|++|.+.+ .+|
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~----------------N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~-~i~ 71 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVL----------------TKLRVIQKGAFSGFGDLEKIEISQNDVLE-VIE 71 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEES----------------CCCSEECTTSSTTCTTCCEEEEECCTTCC-EEC
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccC----------------CcCCCcCHHHHcCCCCCCEEECcCCCCCC-ccC
Confidence 678889997421 2456666666 57775444568888888888888888875 565
Q ss_pred c-cccCCCCCcE-EEccCCcCCCCCccccCCCCCCCEEeCcCCCCC
Q 027602 137 R-FIGSMGNQKY-LNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLY 180 (221)
Q Consensus 137 ~-~~~~l~~L~~-L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~ 180 (221)
. .|.+++++++ +.+..|+++...|..+..+++|++|++++|++.
T Consensus 72 ~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 72 ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred hhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccc
Confidence 4 4677777664 555667787666677788888888888888775
No 128
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.10 E-value=5.4e-12 Score=104.74 Aligned_cols=49 Identities=22% Similarity=0.196 Sum_probs=21.2
Q ss_pred CCccccCccccCCCCCcEEeCccC-CCCCCcccccccCCCCCcEEEccCC
Q 027602 105 MLVGKVNPSLLDLEHLSYLDLSFN-DFQGVQIPRFIGSMGNQKYLNLLGS 153 (221)
Q Consensus 105 ~l~g~~p~~l~~l~~L~~L~L~~n-~l~g~~ip~~~~~l~~L~~L~l~~N 153 (221)
.+.+..+..+..+++|++|++++| .+++..++..+..+++|++|++++|
T Consensus 129 ~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 129 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 444444444444455555555544 3432013333344444444444444
No 129
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.04 E-value=3.4e-10 Score=102.12 Aligned_cols=87 Identities=23% Similarity=0.137 Sum_probs=68.1
Q ss_pred CCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCCCCCCCCEE
Q 027602 118 EHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLSGLSFLEHL 196 (221)
Q Consensus 118 ~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~~l~~L~~L 196 (221)
++|+.|++++|.++ .+| ..+++|++|++++|.++ .+|. .+++|++|++++|+++ .+| .+..+++|++|
T Consensus 221 ~~L~~L~Ls~N~L~--~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 221 SGLKELIVSGNRLT--SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT--RLPESLIHLSSETTV 289 (622)
T ss_dssp TTCCEEECCSSCCS--CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC--SCCGGGGGSCTTCEE
T ss_pred CCCCEEEccCCccC--cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC--cCCHHHhhccccCEE
Confidence 67888888888887 456 34578888888888887 5665 5678999999999986 555 77888999999
Q ss_pred EcccCCCCCCCCccccccc
Q 027602 197 DFSTTRKMGFTDTKLVSVI 215 (221)
Q Consensus 197 ~l~~N~l~g~ip~~~~~~~ 215 (221)
++++|+++|.+|..+..+.
T Consensus 290 ~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 290 NLEGNPLSERTLQALREIT 308 (622)
T ss_dssp ECCSCCCCHHHHHHHHHHH
T ss_pred EecCCCCCCcCHHHHHhcc
Confidence 9999999988877665443
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.04 E-value=3e-11 Score=102.51 Aligned_cols=103 Identities=19% Similarity=0.157 Sum_probs=79.2
Q ss_pred CCCc--c---ccCccccCCCCCcEEeCccCCCC----CCcccccccCCCCCcEEEccCCcCCCC----Ccccc--CCCCC
Q 027602 104 SMLV--G---KVNPSLLDLEHLSYLDLSFNDFQ----GVQIPRFIGSMGNQKYLNLLGSQFGGV----IPHQL--GNLSS 168 (221)
Q Consensus 104 n~l~--g---~~p~~l~~l~~L~~L~L~~n~l~----g~~ip~~~~~l~~L~~L~l~~N~l~g~----~p~~l--~~l~~ 168 (221)
|.+. | ..|..+..+++|++|++++|.++ + .+|..+..+++|++|++++|.+++. +|..+ +.+++
T Consensus 197 n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~ 275 (386)
T 2ca6_A 197 NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS-ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG 275 (386)
T ss_dssp SCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH-HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC
T ss_pred CCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH-HHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCC
Confidence 5665 2 34447788889999999999885 4 6778888888999999999988765 55666 34888
Q ss_pred CCEEeCcCCCCCCc----CCC-cC-CCCCCCCEEEcccCCCCCCCC
Q 027602 169 LRYLDLSRNFLYVV----NFG-WL-SGLSFLEHLDFSTTRKMGFTD 208 (221)
Q Consensus 169 L~~L~l~~N~l~~~----~~p-~~-~~l~~L~~L~l~~N~l~g~ip 208 (221)
|++|++++|.++ . .+| .+ .++++|++|++++|.+++..|
T Consensus 276 L~~L~L~~n~i~-~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 276 LQTLRLQYNEIE-LDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCEEECCSSCCB-HHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred eEEEECcCCcCC-HHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 999999999986 3 255 44 457899999999999988764
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.94 E-value=1.4e-10 Score=97.66 Aligned_cols=111 Identities=17% Similarity=0.102 Sum_probs=77.6
Q ss_pred cEEEEEcCCCCCCCCCCccccCCCCCCCccccC----ccccCCC-CCcEEeCccCCCCCCcccccccCC-----CCCcEE
Q 027602 79 HILELNLRNPFNYYVQPDQFEANPRSMLVGKVN----PSLLDLE-HLSYLDLSFNDFQGVQIPRFIGSM-----GNQKYL 148 (221)
Q Consensus 79 ~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p----~~l~~l~-~L~~L~L~~n~l~g~~ip~~~~~l-----~~L~~L 148 (221)
.++.+++++ |.+.+..+ ..+.+++ +|++|++++|.+++ ..+..+..+ ++|++|
T Consensus 23 ~L~~L~Ls~----------------n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L 85 (362)
T 3goz_A 23 GVTSLDLSL----------------NNLYSISTVELIQAFANTPASVTSLNLSGNSLGF-KNSDELVQILAAIPANVTSL 85 (362)
T ss_dssp TCCEEECTT----------------SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEE
T ss_pred CceEEEccC----------------CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCH-HHHHHHHHHHhccCCCccEE
Confidence 366777776 56666555 5667777 78888888888886 556555554 788888
Q ss_pred EccCCcCCCCCccccC----CC-CCCCEEeCcCCCCCCcCCC-c----CCC-CCCCCEEEcccCCCCCCC
Q 027602 149 NLLGSQFGGVIPHQLG----NL-SSLRYLDLSRNFLYVVNFG-W----LSG-LSFLEHLDFSTTRKMGFT 207 (221)
Q Consensus 149 ~l~~N~l~g~~p~~l~----~l-~~L~~L~l~~N~l~~~~~p-~----~~~-l~~L~~L~l~~N~l~g~i 207 (221)
++++|.+++..+..+. .+ ++|++|++++|.++ ...+ . +.. .++|++|++++|.+++.-
T Consensus 86 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 154 (362)
T 3goz_A 86 NLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS-SKSSSEFKQAFSNLPASITSLNLRGNDLGIKS 154 (362)
T ss_dssp ECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG-GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred ECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC-cHHHHHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence 8888888766665433 33 78888888888885 3322 2 333 358888888888888543
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.94 E-value=4.1e-11 Score=101.61 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=47.8
Q ss_pred CCCcEEeCccCCCCCCccc---ccccCCCCCcEEEccCCcCC--C---CCccccCCCCCCCEEeCcCCCCCC---cCCC-
Q 027602 118 EHLSYLDLSFNDFQGVQIP---RFIGSMGNQKYLNLLGSQFG--G---VIPHQLGNLSSLRYLDLSRNFLYV---VNFG- 185 (221)
Q Consensus 118 ~~L~~L~L~~n~l~g~~ip---~~~~~l~~L~~L~l~~N~l~--g---~~p~~l~~l~~L~~L~l~~N~l~~---~~~p- 185 (221)
++|++|++++|.++...+| ..+..+++|++|++++|+++ | ..|..+..+++|++|++++|.++. ..+|
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 5566666666655521333 23445556666666666654 1 122245556666666666666521 1233
Q ss_pred cCCCCCCCCEEEcccCCCCCC
Q 027602 186 WLSGLSFLEHLDFSTTRKMGF 206 (221)
Q Consensus 186 ~~~~l~~L~~L~l~~N~l~g~ 206 (221)
.+..+++|++|++++|.+++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHH
T ss_pred HHccCCCcCEEECCCCCCchh
Confidence 445566666666666666654
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.90 E-value=2.6e-09 Score=89.50 Aligned_cols=101 Identities=18% Similarity=0.146 Sum_probs=80.8
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCcccc-cccCCCCCcEEEccCCcCCCCCcc-ccCCCCCCCE-EeCcCCCCC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPR-FIGSMGNQKYLNLLGSQFGGVIPH-QLGNLSSLRY-LDLSRNFLY 180 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~-~~~~l~~L~~L~l~~N~l~g~~p~-~l~~l~~L~~-L~l~~N~l~ 180 (221)
++++ .+|..+ .+++++|+|++|+++ .+|. .|..+++|++|+|++|++.+.+|. .+.++++++. +.+..|+++
T Consensus 19 ~~Lt-~iP~~l--~~~l~~L~Ls~N~i~--~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 19 SKVT-EIPSDL--PRNAIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp TTCC-SCCTTC--CTTCSEEEEESCCCS--EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred CCCC-ccCcCc--CCCCCEEEccCCcCC--CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence 3565 567665 368999999999999 6775 689999999999999998777764 5688888775 566778986
Q ss_pred CcCCC-cCCCCCCCCEEEcccCCCCCCCCcc
Q 027602 181 VVNFG-WLSGLSFLEHLDFSTTRKMGFTDTK 210 (221)
Q Consensus 181 ~~~~p-~~~~l~~L~~L~l~~N~l~g~ip~~ 210 (221)
...| .+..+++|++|++++|++++..+..
T Consensus 94 -~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~ 123 (350)
T 4ay9_X 94 -YINPEAFQNLPNLQYLLISNTGIKHLPDVH 123 (350)
T ss_dssp -EECTTSBCCCTTCCEEEEEEECCSSCCCCT
T ss_pred -ccCchhhhhccccccccccccccccCCchh
Confidence 3444 7888999999999999998866543
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.89 E-value=1.8e-10 Score=97.01 Aligned_cols=116 Identities=19% Similarity=0.159 Sum_probs=86.7
Q ss_pred cEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCC-----CCCcEEeCccCCCCCCccccc----ccCC-CCCcEE
Q 027602 79 HILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDL-----EHLSYLDLSFNDFQGVQIPRF----IGSM-GNQKYL 148 (221)
Q Consensus 79 ~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l-----~~L~~L~L~~n~l~g~~ip~~----~~~l-~~L~~L 148 (221)
+++.+++++ |.+.+..+..+..+ ++|++|++++|.+++ ..+.. +..+ ++|++|
T Consensus 52 ~L~~L~Ls~----------------N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L 114 (362)
T 3goz_A 52 SVTSLNLSG----------------NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY-KSSDELVKTLAAIPFTITVL 114 (362)
T ss_dssp TCCEEECCS----------------SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEE
T ss_pred ceeEEECcC----------------CCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh-HHHHHHHHHHHhCCCCccEE
Confidence 688888887 58887767666664 899999999999986 55553 3444 899999
Q ss_pred EccCCcCCCCCcccc----CC-CCCCCEEeCcCCCCCCcCC---C-cCCCCC-CCCEEEcccCCCCCCCCccc
Q 027602 149 NLLGSQFGGVIPHQL----GN-LSSLRYLDLSRNFLYVVNF---G-WLSGLS-FLEHLDFSTTRKMGFTDTKL 211 (221)
Q Consensus 149 ~l~~N~l~g~~p~~l----~~-l~~L~~L~l~~N~l~~~~~---p-~~~~l~-~L~~L~l~~N~l~g~ip~~~ 211 (221)
++++|.+++..+..+ .. .++|++|++++|.++.... + .+..++ +|++|++++|++++..+..+
T Consensus 115 ~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 187 (362)
T 3goz_A 115 DLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAEL 187 (362)
T ss_dssp ECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred ECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHH
Confidence 999999987665443 34 3699999999999862221 1 234444 99999999999988776443
No 135
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.85 E-value=6.3e-11 Score=96.02 Aligned_cols=68 Identities=21% Similarity=0.160 Sum_probs=43.3
Q ss_pred cCCCCCcEEEccCCcCCC--CCccccCCCCCCCEEeCcCCCCCCc-CCCcCCCCCCCCEEEcccCCCCCCCC
Q 027602 140 GSMGNQKYLNLLGSQFGG--VIPHQLGNLSSLRYLDLSRNFLYVV-NFGWLSGLSFLEHLDFSTTRKMGFTD 208 (221)
Q Consensus 140 ~~l~~L~~L~l~~N~l~g--~~p~~l~~l~~L~~L~l~~N~l~~~-~~p~~~~l~~L~~L~l~~N~l~g~ip 208 (221)
.++++|+.|+|++|++++ .+|..+..+++|+.|+|++|.+++. .+..+..+ +|++|++++|.+++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccC
Confidence 346677777777777775 3445555677777777777777522 11223333 77777777777777665
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.73 E-value=1.8e-10 Score=99.49 Aligned_cols=67 Identities=18% Similarity=0.023 Sum_probs=31.0
Q ss_pred ccCCCCCcEEEccCCcCCCCCccccCC-----CCCCCEEeCcCCCCCCc---CCC-cCCCCCCCCEEEcccCCCCC
Q 027602 139 IGSMGNQKYLNLLGSQFGGVIPHQLGN-----LSSLRYLDLSRNFLYVV---NFG-WLSGLSFLEHLDFSTTRKMG 205 (221)
Q Consensus 139 ~~~l~~L~~L~l~~N~l~g~~p~~l~~-----l~~L~~L~l~~N~l~~~---~~p-~~~~l~~L~~L~l~~N~l~g 205 (221)
+..+++|++|++++|.+++..+..+.. .++|++|++++|.++.. .++ .+..+++|++|++++|++++
T Consensus 337 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 334455555555555544332222211 34555555555555310 233 33445555566666655554
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.69 E-value=7.3e-10 Score=95.62 Aligned_cols=111 Identities=19% Similarity=0.095 Sum_probs=63.9
Q ss_pred CcEEEEEcCCCCCCCCCCccccCCCCCCCccc----cCccccCCCCCcEEeCccCCCCCCccccccc-----CCCCCcEE
Q 027602 78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGK----VNPSLLDLEHLSYLDLSFNDFQGVQIPRFIG-----SMGNQKYL 148 (221)
Q Consensus 78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~----~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~-----~l~~L~~L 148 (221)
.+++.+++++ |.+.+. ++..+.++++|++|++++|.+++ ..+..+. ..++|++|
T Consensus 256 ~~L~~L~L~~----------------n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 256 SRLRTLWIWE----------------CGITAKGCGDLCRVLRAKESLKELSLAGNELGD-EGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp CCCCEEECTT----------------SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH-HHHHHHHHHHTSTTCCCCEE
T ss_pred CCceEEECcC----------------CCCCHHHHHHHHHHHhhCCCcceEECCCCCCch-HHHHHHHHHhccCCccceee
Confidence 4567777776 355543 45555666777777777776654 3222222 12467777
Q ss_pred EccCCcCCCC----CccccCCCCCCCEEeCcCCCCCCcCCCcCC----C-CCCCCEEEcccCCCCC
Q 027602 149 NLLGSQFGGV----IPHQLGNLSSLRYLDLSRNFLYVVNFGWLS----G-LSFLEHLDFSTTRKMG 205 (221)
Q Consensus 149 ~l~~N~l~g~----~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~----~-l~~L~~L~l~~N~l~g 205 (221)
++++|.+++. ++..+..+++|++|++++|.+....+..+. . .++|++|++++|++++
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 7777776644 344555566777777777766421122221 1 4567777777777665
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.51 E-value=2e-08 Score=85.05 Aligned_cols=91 Identities=19% Similarity=0.104 Sum_probs=64.6
Q ss_pred CCCCCcEEeCccCCCCCC---cccccccCCCCCcEEEccCCcCCCC----CccccCCCCCCCEEeCcCCCCCCcC---CC
Q 027602 116 DLEHLSYLDLSFNDFQGV---QIPRFIGSMGNQKYLNLLGSQFGGV----IPHQLGNLSSLRYLDLSRNFLYVVN---FG 185 (221)
Q Consensus 116 ~l~~L~~L~L~~n~l~g~---~ip~~~~~l~~L~~L~l~~N~l~g~----~p~~l~~l~~L~~L~l~~N~l~~~~---~p 185 (221)
..++|++|+|++|.++.. .++..+...++|++|+|++|.++.. ++..+...++|++|++++|.++... +.
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 457788999998888630 1344456778899999999988642 3455667788999999999885221 11
Q ss_pred -cCCCCCCCCEEEcccCCCCCC
Q 027602 186 -WLSGLSFLEHLDFSTTRKMGF 206 (221)
Q Consensus 186 -~~~~l~~L~~L~l~~N~l~g~ 206 (221)
.+...++|++|++++|.|+..
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHhCCCCCEEeccCCCCCHH
Confidence 234567899999999988754
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.42 E-value=1.6e-08 Score=89.89 Aligned_cols=96 Identities=14% Similarity=0.047 Sum_probs=69.8
Q ss_pred cCccccCCCCCcEEeCccC--CCCCCccccccc-CCCCCcEEEccCCcCCC-CCccccCCCCCCCEEeCcCCCCCCcCCC
Q 027602 110 VNPSLLDLEHLSYLDLSFN--DFQGVQIPRFIG-SMGNQKYLNLLGSQFGG-VIPHQLGNLSSLRYLDLSRNFLYVVNFG 185 (221)
Q Consensus 110 ~p~~l~~l~~L~~L~L~~n--~l~g~~ip~~~~-~l~~L~~L~l~~N~l~g-~~p~~l~~l~~L~~L~l~~N~l~~~~~p 185 (221)
++..+.++++|+.|+++++ .+++ ..+..+. .+++|++|++++|.+++ .++..+..+++|++|++++|.++...++
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 506 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTD-LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCH-HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred HHHHHHhCCCCCEEEEecCCCCccH-HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence 3334556778888888643 3555 4444443 47889999999999876 3455567889999999999998633355
Q ss_pred c-CCCCCCCCEEEcccCCCCCC
Q 027602 186 W-LSGLSFLEHLDFSTTRKMGF 206 (221)
Q Consensus 186 ~-~~~l~~L~~L~l~~N~l~g~ 206 (221)
. ...+++|++|++++|++++.
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHhcCccCeeECcCCcCCHH
Confidence 3 45689999999999999876
No 140
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.38 E-value=2.2e-07 Score=75.17 Aligned_cols=80 Identities=26% Similarity=0.296 Sum_probs=62.5
Q ss_pred cCCCCCcEEeCccCCCCCC-cccccccCCCCCcEEEccCCcCCCCCccccCCCC--CCCEEeCcCCCCCCcCCC------
Q 027602 115 LDLEHLSYLDLSFNDFQGV-QIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLS--SLRYLDLSRNFLYVVNFG------ 185 (221)
Q Consensus 115 ~~l~~L~~L~L~~n~l~g~-~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~--~L~~L~l~~N~l~~~~~p------ 185 (221)
.++++|+.|+|++|.+++. .+|..+..+++|+.|+|++|.+++. ..+..+. +|+.|++++|.+. +.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~-~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC-DTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG-GGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc-cccCcchhHH
Confidence 4688999999999999962 1335567899999999999999864 3344444 9999999999997 5444
Q ss_pred --cCCCCCCCCEEE
Q 027602 186 --WLSGLSFLEHLD 197 (221)
Q Consensus 186 --~~~~l~~L~~L~ 197 (221)
.+..+++|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 255689999886
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.37 E-value=3.5e-08 Score=83.60 Aligned_cols=110 Identities=16% Similarity=0.067 Sum_probs=78.1
Q ss_pred cEEEEEcCCCCCCCCCCccccCCCCCCCccccCccc-cCCCCCcEEeCccCCCCCCcccccc-----cCCCCCcEEEccC
Q 027602 79 HILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSL-LDLEHLSYLDLSFNDFQGVQIPRFI-----GSMGNQKYLNLLG 152 (221)
Q Consensus 79 ~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l-~~l~~L~~L~L~~n~l~g~~ip~~~-----~~l~~L~~L~l~~ 152 (221)
.++.++|++ |.+...-...+ ..+++|+.|+|++|.++. .-...+ ...++|++|++++
T Consensus 102 ~L~~L~Ls~----------------n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~-~~~~~L~~~L~~~~~~L~~L~Ls~ 164 (372)
T 3un9_A 102 ALDEVNLAS----------------CQLDPAGLRTLLPVFLRARKLGLQLNSLGP-EACKDLRDLLLHDQCQITTLRLSN 164 (372)
T ss_dssp CEEEEECTT----------------CCCCHHHHHHTHHHHHTEEEEECCSSCCCH-HHHHHHHHHHHSTTCCCCEEECCS
T ss_pred CceEEEecC----------------CCCCHHHHHHHHHHHHhccHhhcCCCCCCH-HHHHHHHHHHHhcCCccceeeCCC
Confidence 567777776 56654332222 346789999999999985 323333 2467899999999
Q ss_pred CcCCCC----CccccCCCCCCCEEeCcCCCCCCcC---CC-cCCCCCCCCEEEcccCCCCC
Q 027602 153 SQFGGV----IPHQLGNLSSLRYLDLSRNFLYVVN---FG-WLSGLSFLEHLDFSTTRKMG 205 (221)
Q Consensus 153 N~l~g~----~p~~l~~l~~L~~L~l~~N~l~~~~---~p-~~~~l~~L~~L~l~~N~l~g 205 (221)
|.++.. ++..+...++|++|++++|.+.... +. .+...++|++|++++|.|+.
T Consensus 165 n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 165 NPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp SCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred CCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 998642 4445567889999999999985221 12 45667899999999999975
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.21 E-value=1.9e-07 Score=71.24 Aligned_cols=111 Identities=15% Similarity=0.087 Sum_probs=81.0
Q ss_pred CcEEEEEcCCCCCCCCCCccccCCCCC-CCcc----ccCccccCCCCCcEEeCccCCCCCC---cccccccCCCCCcEEE
Q 027602 78 GHILELNLRNPFNYYVQPDQFEANPRS-MLVG----KVNPSLLDLEHLSYLDLSFNDFQGV---QIPRFIGSMGNQKYLN 149 (221)
Q Consensus 78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n-~l~g----~~p~~l~~l~~L~~L~L~~n~l~g~---~ip~~~~~l~~L~~L~ 149 (221)
..++.++|++ | .+.. .+...+...++|++|+|++|.+... .+...+...++|++|+
T Consensus 36 ~~L~~L~L~~----------------n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~ 99 (185)
T 1io0_A 36 PDLEEVNLNN----------------IMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLN 99 (185)
T ss_dssp TTCCEEECTT----------------CTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred CCCCEEEecC----------------CCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEE
Confidence 4688898887 4 5553 2345566778999999999999741 1334455568899999
Q ss_pred ccCCcCCCC----CccccCCCCCCCEEeC--cCCCCCCcC---CC-cCCCCCCCCEEEcccCCCC
Q 027602 150 LLGSQFGGV----IPHQLGNLSSLRYLDL--SRNFLYVVN---FG-WLSGLSFLEHLDFSTTRKM 204 (221)
Q Consensus 150 l~~N~l~g~----~p~~l~~l~~L~~L~l--~~N~l~~~~---~p-~~~~l~~L~~L~l~~N~l~ 204 (221)
|++|.++.. +...+...++|++|++ ++|.+.... +. .+...++|++|++++|.+.
T Consensus 100 L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 100 VESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 999998753 4556777789999999 889985222 11 3445688999999999874
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.17 E-value=4.9e-06 Score=68.78 Aligned_cols=86 Identities=16% Similarity=0.136 Sum_probs=49.1
Q ss_pred CCCCcEEeCccCCCCCCcccc-cccCCCCCcEEEccCCcCCCCCccccCCCCCCC-EEeCcCCCCCCcCCC--cCCCCCC
Q 027602 117 LEHLSYLDLSFNDFQGVQIPR-FIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLR-YLDLSRNFLYVVNFG--WLSGLSF 192 (221)
Q Consensus 117 l~~L~~L~L~~n~l~g~~ip~-~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~-~L~l~~N~l~~~~~p--~~~~l~~ 192 (221)
+++|+.+++++|+++ .+|. .|..+++|+.+++.+| ++..-+..|.++++|+ .+++.+ .++ .++ .|.++++
T Consensus 225 ~~~L~~l~L~~n~i~--~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~--~I~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT--TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT--AIEFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTBCCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC--EECTTTTTTCTT
T ss_pred cCCCeEEECCCCCcc--eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce--EEchhhhhCCcc
Confidence 556666666666666 3443 3566666666666665 4433334556666666 666665 443 222 5566666
Q ss_pred CCEEEcccCCCCCCCC
Q 027602 193 LEHLDFSTTRKMGFTD 208 (221)
Q Consensus 193 L~~L~l~~N~l~g~ip 208 (221)
|+.+++++|+++.--+
T Consensus 299 L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 299 LRYVLATGDKITTLGD 314 (329)
T ss_dssp EEEEEECSSCCCEECT
T ss_pred CCEEEeCCCccCccch
Confidence 6666666666554333
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.11 E-value=1.6e-07 Score=83.30 Aligned_cols=91 Identities=18% Similarity=0.076 Sum_probs=65.7
Q ss_pred cccCCCCCcEEeCccCCCCCCcccccccC-CCCCcEEEccCCcCCCCCcccc-CCCCCCCEEeCcCCCCCCcCCC-cCCC
Q 027602 113 SLLDLEHLSYLDLSFNDFQGVQIPRFIGS-MGNQKYLNLLGSQFGGVIPHQL-GNLSSLRYLDLSRNFLYVVNFG-WLSG 189 (221)
Q Consensus 113 ~l~~l~~L~~L~L~~n~l~g~~ip~~~~~-l~~L~~L~l~~N~l~g~~p~~l-~~l~~L~~L~l~~N~l~~~~~p-~~~~ 189 (221)
.+..+++|+.|++++ .+++ ..+..+.. +++|++|++++|.+++..+..+ ..+++|++|++++|.++...+. ....
T Consensus 427 l~~~~~~L~~L~L~~-~l~~-~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~ 504 (594)
T 2p1m_B 427 IVEHCKDLRRLSLSG-LLTD-KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASK 504 (594)
T ss_dssp HHHHCTTCCEEECCS-SCCH-HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGG
T ss_pred HHhhCCCccEEeecC-cccH-HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHh
Confidence 356778888888876 6665 44455554 7889999999998876544444 5688899999999988522233 3345
Q ss_pred CCCCCEEEcccCCCCC
Q 027602 190 LSFLEHLDFSTTRKMG 205 (221)
Q Consensus 190 l~~L~~L~l~~N~l~g 205 (221)
+++|++|++++|+++.
T Consensus 505 l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 505 LETMRSLWMSSCSVSF 520 (594)
T ss_dssp GGGSSEEEEESSCCBH
T ss_pred CCCCCEEeeeCCCCCH
Confidence 7899999999998843
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.09 E-value=1.8e-06 Score=76.61 Aligned_cols=91 Identities=11% Similarity=-0.091 Sum_probs=41.3
Q ss_pred CccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCcCC---CCCccccCCCCCCCEEeCcCCCCCCcCCC-c
Q 027602 111 NPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQFG---GVIPHQLGNLSSLRYLDLSRNFLYVVNFG-W 186 (221)
Q Consensus 111 p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~l~---g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~ 186 (221)
+..+.++++|+.|++++|.+. .+|..+..+++|++|+++..... +..+..+..+++|+.++++++.. ..+| .
T Consensus 213 ~~~~~~~~~L~~L~L~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~l~~~ 288 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDFEIL--ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP--NEMPIL 288 (592)
T ss_dssp HHHHHHCTTCCEEECSSCBGG--GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT--TTGGGG
T ss_pred HHHHhhCCCCcEEeccCccHH--HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch--hHHHHH
Confidence 333444555555555555554 24444444555555555432111 11222333444444444444321 2333 3
Q ss_pred CCCCCCCCEEEcccCCCCC
Q 027602 187 LSGLSFLEHLDFSTTRKMG 205 (221)
Q Consensus 187 ~~~l~~L~~L~l~~N~l~g 205 (221)
+..+++|++|++++|.+++
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~ 307 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLET 307 (592)
T ss_dssp GGGGGGCCEEEETTCCCCH
T ss_pred HhhcCCCcEEecCCCcCCH
Confidence 3345566666666666544
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.05 E-value=1e-05 Score=66.88 Aligned_cols=89 Identities=13% Similarity=0.106 Sum_probs=67.4
Q ss_pred CCCccccCccccCCCCCcEEeCccCCCCCCccc-ccccCCCCCc-EEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCC
Q 027602 104 SMLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIP-RFIGSMGNQK-YLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYV 181 (221)
Q Consensus 104 n~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip-~~~~~l~~L~-~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~ 181 (221)
|++...-+..|.++++|+.+++.+| ++ .|+ ..|..+++|+ .+++.+ .++..-+..|.++++|+.++++.|.++
T Consensus 236 n~i~~I~~~aF~~~~~L~~l~l~~n-i~--~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~- 310 (329)
T 3sb4_A 236 TNATTIPDFTFAQKKYLLKIKLPHN-LK--TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT- 310 (329)
T ss_dssp BCCCEECTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-
T ss_pred CCcceecHhhhhCCCCCCEEECCcc-cc--eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-
Confidence 4555444556888999999999887 66 444 5588889998 999988 665444577888999999999888885
Q ss_pred cCCC--cCCCCCCCCEEEc
Q 027602 182 VNFG--WLSGLSFLEHLDF 198 (221)
Q Consensus 182 ~~~p--~~~~l~~L~~L~l 198 (221)
.++ .|.++++|+.++.
T Consensus 311 -~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 311 -TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp -EECTTTTCTTCCCCEEEC
T ss_pred -ccchhhhcCCcchhhhcc
Confidence 333 7888889988763
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.03 E-value=1.4e-07 Score=83.70 Aligned_cols=98 Identities=18% Similarity=0.173 Sum_probs=56.9
Q ss_pred CCCccccCcccc-CCCCCcEEeCccC-CCCCCcccccccCCCCCcEEEccCCcCCCCCcccc----CCCCCCCEEeCcCC
Q 027602 104 SMLVGKVNPSLL-DLEHLSYLDLSFN-DFQGVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQL----GNLSSLRYLDLSRN 177 (221)
Q Consensus 104 n~l~g~~p~~l~-~l~~L~~L~L~~n-~l~g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l----~~l~~L~~L~l~~N 177 (221)
|.+.+..+..+. .+++|++|++++| .++...++..+..+++|++|++++|.+++..+..+ ..+++|++|++++|
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~ 194 (594)
T 2p1m_B 115 MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL 194 (594)
T ss_dssp CBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTC
T ss_pred cEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEeccc
Confidence 356555555554 5677777777777 44420134444467777777777777665433322 35567777777777
Q ss_pred C--CCCcCCCc-CCCCCCCCEEEcccC
Q 027602 178 F--LYVVNFGW-LSGLSFLEHLDFSTT 201 (221)
Q Consensus 178 ~--l~~~~~p~-~~~l~~L~~L~l~~N 201 (221)
. +....++. ...+++|++|++++|
T Consensus 195 ~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 195 ASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 5 22111221 234577777777776
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.99 E-value=1.7e-06 Score=65.85 Aligned_cols=99 Identities=12% Similarity=0.072 Sum_probs=73.8
Q ss_pred cccCccccCCCCCcEEeCccC-CCCCC---cccccccCCCCCcEEEccCCcCCCC----CccccCCCCCCCEEeCcCCCC
Q 027602 108 GKVNPSLLDLEHLSYLDLSFN-DFQGV---QIPRFIGSMGNQKYLNLLGSQFGGV----IPHQLGNLSSLRYLDLSRNFL 179 (221)
Q Consensus 108 g~~p~~l~~l~~L~~L~L~~n-~l~g~---~ip~~~~~l~~L~~L~l~~N~l~g~----~p~~l~~l~~L~~L~l~~N~l 179 (221)
..+...+...+.|++|+|++| .+... .+...+...++|++|+|++|.+... +...+...++|++|++++|.+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 344455677899999999999 88741 1345566778999999999998643 334455568899999999999
Q ss_pred CCcC---CC-cCCCCCCCCEEEc--ccCCCCCC
Q 027602 180 YVVN---FG-WLSGLSFLEHLDF--STTRKMGF 206 (221)
Q Consensus 180 ~~~~---~p-~~~~l~~L~~L~l--~~N~l~g~ 206 (221)
.... +. .+...++|++|++ ++|.++..
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 6322 22 5666789999999 88998753
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=2e-06 Score=65.04 Aligned_cols=86 Identities=10% Similarity=-0.034 Sum_probs=59.3
Q ss_pred CCCcEEeCccCCCCCCcccccccCCCCCcEEEccCCc-CCCCCccccCCC----CCCCEEeCcCCC-CCCcCCCcCCCCC
Q 027602 118 EHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLLGSQ-FGGVIPHQLGNL----SSLRYLDLSRNF-LYVVNFGWLSGLS 191 (221)
Q Consensus 118 ~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~~N~-l~g~~p~~l~~l----~~L~~L~l~~N~-l~~~~~p~~~~l~ 191 (221)
..|+.||++++.++. .--..+..+++|++|+|+++. ++..--..+..+ ++|++|+++++. ++...+..+.+++
T Consensus 61 ~~L~~LDLs~~~Itd-~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMS-IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCG-GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccH-HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 468888888888875 333456778888888888875 554322334443 368888888875 6644455666788
Q ss_pred CCCEEEcccCC-CC
Q 027602 192 FLEHLDFSTTR-KM 204 (221)
Q Consensus 192 ~L~~L~l~~N~-l~ 204 (221)
+|++|+++++. ++
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 88888888874 44
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.33 E-value=0.0008 Score=57.28 Aligned_cols=97 Identities=9% Similarity=0.044 Sum_probs=69.3
Q ss_pred CCccccCccccCCCCCcEEeCccCCCCCC---cc-cccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCC
Q 027602 105 MLVGKVNPSLLDLEHLSYLDLSFNDFQGV---QI-PRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLY 180 (221)
Q Consensus 105 ~l~g~~p~~l~~l~~L~~L~L~~n~l~g~---~i-p~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~ 180 (221)
++...-...|.++++|+.+++.+|.+... .+ +..|..+++|+.+.+.+ .++..-...|.++++|+.+++..| ++
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc
Confidence 44433355788899999999988776510 13 35678889999999984 455333457788899999999665 53
Q ss_pred CcCCC--cCCCCCCCCEEEcccCCCCCC
Q 027602 181 VVNFG--WLSGLSFLEHLDFSTTRKMGF 206 (221)
Q Consensus 181 ~~~~p--~~~~l~~L~~L~l~~N~l~g~ 206 (221)
.++ .|.++ +|+.+++.+|.+.--
T Consensus 336 --~I~~~aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 336 --QINFSAFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp --EECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred --EEcHHhCCCC-CCCEEEEcCCCCccc
Confidence 333 77788 999999999876543
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.31 E-value=9e-05 Score=55.96 Aligned_cols=84 Identities=11% Similarity=0.071 Sum_probs=63.0
Q ss_pred CcEEEEEcCCCCCCCCCCccccCCCCCCCccccCccccCCCCCcEEeCccCC-CCCCcccccccCC----CCCcEEEccC
Q 027602 78 GHILELNLRNPFNYYVQPDQFEANPRSMLVGKVNPSLLDLEHLSYLDLSFND-FQGVQIPRFIGSM----GNQKYLNLLG 152 (221)
Q Consensus 78 ~~v~~l~l~~~~~~l~~~~~~~~~~~n~l~g~~p~~l~~l~~L~~L~L~~n~-l~g~~ip~~~~~l----~~L~~L~l~~ 152 (221)
-++++||+++. .++..--..+..+++|+.|+|+++. ++. .--..+..+ ++|++|++++
T Consensus 61 ~~L~~LDLs~~----------------~Itd~GL~~L~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~ 123 (176)
T 3e4g_A 61 YKIQAIDATDS----------------CIMSIGFDHMEGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIIS 123 (176)
T ss_dssp CCEEEEEEESC----------------CCCGGGGGGGTTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEES
T ss_pred ceEeEEeCcCC----------------CccHHHHHHhcCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCC
Confidence 36999999985 4554433457889999999999985 775 333445554 4799999999
Q ss_pred Cc-CCCCCccccCCCCCCCEEeCcCCC
Q 027602 153 SQ-FGGVIPHQLGNLSSLRYLDLSRNF 178 (221)
Q Consensus 153 N~-l~g~~p~~l~~l~~L~~L~l~~N~ 178 (221)
+. ++..--..+..+++|++|+++++.
T Consensus 124 C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 124 CGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp CTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 75 765433457789999999999986
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.28 E-value=3.5e-05 Score=64.91 Aligned_cols=90 Identities=18% Similarity=0.226 Sum_probs=53.3
Q ss_pred CCCCCcEEeCcc--CCCCCC----cccccc--cCCCCCcEEEccCCcCCCCCcccc---CCCCCCCEEeCcCCCCCCcC-
Q 027602 116 DLEHLSYLDLSF--NDFQGV----QIPRFI--GSMGNQKYLNLLGSQFGGVIPHQL---GNLSSLRYLDLSRNFLYVVN- 183 (221)
Q Consensus 116 ~l~~L~~L~L~~--n~l~g~----~ip~~~--~~l~~L~~L~l~~N~l~g~~p~~l---~~l~~L~~L~l~~N~l~~~~- 183 (221)
.+++|+.|+|+. |...+. .+...+ ..+++|++|++.+|.+....+..+ ..+++|++|+++.|.+....
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 577888887753 221110 111122 246788888888877764333222 24678888888888875211
Q ss_pred --CC-cCCCCCCCCEEEcccCCCCC
Q 027602 184 --FG-WLSGLSFLEHLDFSTTRKMG 205 (221)
Q Consensus 184 --~p-~~~~l~~L~~L~l~~N~l~g 205 (221)
++ .+..+++|+.|++++|.++.
T Consensus 297 ~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 297 RLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHhhcccCCcceEEECCCCcCCH
Confidence 22 22456788888888887764
No 153
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.13 E-value=0.0011 Score=47.35 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=20.7
Q ss_pred CCcEEeCccCCCCCCcccc-cccCCCCCcEEEccCCcC
Q 027602 119 HLSYLDLSFNDFQGVQIPR-FIGSMGNQKYLNLLGSQF 155 (221)
Q Consensus 119 ~L~~L~L~~n~l~g~~ip~-~~~~l~~L~~L~l~~N~l 155 (221)
+|+.|+|++|+++ .+|. .|..+++|++|+|.+|.+
T Consensus 32 ~l~~L~Ls~N~l~--~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLT--ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCS--SCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCC--ccChhhhhhccccCEEEecCCCe
Confidence 4666666666666 3433 345566666666666655
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.05 E-value=0.0034 Score=53.33 Aligned_cols=45 Identities=16% Similarity=0.011 Sum_probs=25.2
Q ss_pred CCccccCccccCCCCCcEEeCccCCCCCCcccccccCCCCCcEEEcc
Q 027602 105 MLVGKVNPSLLDLEHLSYLDLSFNDFQGVQIPRFIGSMGNQKYLNLL 151 (221)
Q Consensus 105 ~l~g~~p~~l~~l~~L~~L~L~~n~l~g~~ip~~~~~l~~L~~L~l~ 151 (221)
.+...-+..|.++++|+.+++..|.++ .+|...-...+|+.+.+.
T Consensus 167 ~l~~I~~~aF~~c~~L~~l~l~~n~l~--~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 167 TLEQLKEDIFYYCYNLKKADLSKTKIT--KLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp TCCEECSSTTTTCTTCCEEECTTSCCS--EECTTTTTTCCCSEEECC
T ss_pred CccEehHHHhhCcccCCeeecCCCcce--EechhhEeecccCEEEeC
Confidence 333333455677778888888777666 444332223455555554
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.85 E-value=0.0032 Score=44.88 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=42.5
Q ss_pred cEEeCccCCCC-CCcccccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCC
Q 027602 121 SYLDLSFNDFQ-GVQIPRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLY 180 (221)
Q Consensus 121 ~~L~L~~n~l~-g~~ip~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~ 180 (221)
..++.+++.++ . .+|..+. ++|++|+|++|+++..-+..+..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~-~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWA-SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTT-TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccc-cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36788888886 2 4676543 46889999999988544455678888999999998874
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.77 E-value=0.00029 Score=59.27 Aligned_cols=87 Identities=16% Similarity=0.089 Sum_probs=46.2
Q ss_pred CCCCcEEeCccCCCCCCccccccc--CCCCCcEEEccC--CcCCCC-----Ccccc--CCCCCCCEEeCcCCCCCCcCCC
Q 027602 117 LEHLSYLDLSFNDFQGVQIPRFIG--SMGNQKYLNLLG--SQFGGV-----IPHQL--GNLSSLRYLDLSRNFLYVVNFG 185 (221)
Q Consensus 117 l~~L~~L~L~~n~l~g~~ip~~~~--~l~~L~~L~l~~--N~l~g~-----~p~~l--~~l~~L~~L~l~~N~l~~~~~p 185 (221)
+++|+.|++..+.++. .....+. .+++|++|+|+. |...+. +...+ ..+++|++|++.+|.+. ...+
T Consensus 192 ~~~L~~L~L~~~~l~~-~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~-~~~~ 269 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPD-SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ-NVVV 269 (362)
T ss_dssp CTTCSEEEEECSBCCH-HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTH-HHHH
T ss_pred CCCCcEEEEecCCCCh-HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCc-hHHH
Confidence 4566666666555543 2222232 567777777642 221111 11112 24677777777777764 2111
Q ss_pred ----cCCCCCCCCEEEcccCCCCC
Q 027602 186 ----WLSGLSFLEHLDFSTTRKMG 205 (221)
Q Consensus 186 ----~~~~l~~L~~L~l~~N~l~g 205 (221)
....+++|++|+++.|.+++
T Consensus 270 ~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 270 EMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp HHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHHHhCccCCCCCEEECCCCCCCh
Confidence 11246678888887777766
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.11 E-value=0.0015 Score=50.08 Aligned_cols=91 Identities=10% Similarity=0.025 Sum_probs=49.1
Q ss_pred ccccCCCCCcEEeCccCCCCCC---cccccccCCCCCcEEEccCCcCCCC----CccccCCCCCCCEEeCcCCCC-CCcC
Q 027602 112 PSLLDLEHLSYLDLSFNDFQGV---QIPRFIGSMGNQKYLNLLGSQFGGV----IPHQLGNLSSLRYLDLSRNFL-YVVN 183 (221)
Q Consensus 112 ~~l~~l~~L~~L~L~~n~l~g~---~ip~~~~~l~~L~~L~l~~N~l~g~----~p~~l~~l~~L~~L~l~~N~l-~~~~ 183 (221)
+.+..-+.|+.|+|++|.+... .+...+..-+.|++|+|++|.+... +-+.+..-+.|+.|++++|.. .-+.
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~ 143 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN 143 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCH
Confidence 3344556777777777777630 1223333446677777777777532 223344445677777765422 1011
Q ss_pred -----CC-cCCCCCCCCEEEcccCC
Q 027602 184 -----FG-WLSGLSFLEHLDFSTTR 202 (221)
Q Consensus 184 -----~p-~~~~l~~L~~L~l~~N~ 202 (221)
+. .+..-+.|+.|+++.|.
T Consensus 144 ~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 144 QVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHHhCCCcCeEeccCCC
Confidence 11 23334567777776554
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.80 E-value=0.049 Score=45.66 Aligned_cols=84 Identities=11% Similarity=0.273 Sum_probs=55.4
Q ss_pred ccccCCCCCcEEeCccCCCCCCccc-ccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC--cCC
Q 027602 112 PSLLDLEHLSYLDLSFNDFQGVQIP-RFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG--WLS 188 (221)
Q Consensus 112 ~~l~~l~~L~~L~L~~n~l~g~~ip-~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p--~~~ 188 (221)
..+.+++.|+.+.+. +.++ .++ ..|..+++|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++ .+. .|.
T Consensus 282 ~aF~~c~~L~~i~l~-~~i~--~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~--~I~~~aF~ 354 (394)
T 4gt6_A 282 GAFMNCPALQDIEFS-SRIT--ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT--KIPESAFS 354 (394)
T ss_dssp TTTTTCTTCCEEECC-TTCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC--BCCGGGGT
T ss_pred cccccccccccccCC-Cccc--ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC--EEhHhHhh
Confidence 345667777777775 3444 343 45677788888888764 33222356777888888888654 43 344 677
Q ss_pred CCCCCCEEEcccCC
Q 027602 189 GLSFLEHLDFSTTR 202 (221)
Q Consensus 189 ~l~~L~~L~l~~N~ 202 (221)
++.+|+.+++.+|.
T Consensus 355 ~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 355 NCTALNNIEYSGSR 368 (394)
T ss_dssp TCTTCCEEEESSCH
T ss_pred CCCCCCEEEECCce
Confidence 88888888887653
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.48 E-value=0.042 Score=45.70 Aligned_cols=82 Identities=13% Similarity=0.151 Sum_probs=53.9
Q ss_pred ccccCCCCCcEEeCccCCCCCCccc-ccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC--cCC
Q 027602 112 PSLLDLEHLSYLDLSFNDFQGVQIP-RFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG--WLS 188 (221)
Q Consensus 112 ~~l~~l~~L~~L~L~~n~l~g~~ip-~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p--~~~ 188 (221)
..+.++..|+.+.+..+ +. .++ ..|..+++|+.+.+.++.++..-...|.++.+|+.+++..+ ++ .++ .|.
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~--~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~--~I~~~aF~ 330 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VK--TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK--TIQVYAFK 330 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CS--EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC--EECTTTTT
T ss_pred cccceeehhcccccccc-ce--eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc--EEHHHHhh
Confidence 34556677777777543 43 333 35677888888888877766333456778888888888654 43 343 677
Q ss_pred CCCCCCEEEcc
Q 027602 189 GLSFLEHLDFS 199 (221)
Q Consensus 189 ~l~~L~~L~l~ 199 (221)
++.+|+.+.+.
T Consensus 331 ~C~~L~~i~ip 341 (379)
T 4h09_A 331 NCKALSTISYP 341 (379)
T ss_dssp TCTTCCCCCCC
T ss_pred CCCCCCEEEEC
Confidence 77777777654
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.16 E-value=0.011 Score=45.22 Aligned_cols=92 Identities=12% Similarity=0.060 Sum_probs=63.1
Q ss_pred cCccccCCCCCcEEeCccC-CCCCC---cccccccCCCCCcEEEccCCcCCCC----CccccCCCCCCCEEeCcCCCCCC
Q 027602 110 VNPSLLDLEHLSYLDLSFN-DFQGV---QIPRFIGSMGNQKYLNLLGSQFGGV----IPHQLGNLSSLRYLDLSRNFLYV 181 (221)
Q Consensus 110 ~p~~l~~l~~L~~L~L~~n-~l~g~---~ip~~~~~l~~L~~L~l~~N~l~g~----~p~~l~~l~~L~~L~l~~N~l~~ 181 (221)
+...+.+-+.|+.|+|++| .+... .+-..+..-++|+.|+|++|.+... +.+.+..-+.|++|+|++|.+..
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3334455678999999985 77530 1334566678999999999998643 22334345789999999999952
Q ss_pred cCCC----cCCCCCCCCEEEcccC
Q 027602 182 VNFG----WLSGLSFLEHLDFSTT 201 (221)
Q Consensus 182 ~~~p----~~~~l~~L~~L~l~~N 201 (221)
.... .+..-+.|++|+|++|
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCC
Confidence 2221 3455567999999865
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.11 E-value=0.041 Score=46.14 Aligned_cols=87 Identities=14% Similarity=0.100 Sum_probs=57.4
Q ss_pred CccccCCCCCcEEeCccCCCCCCcc-cccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCCcCCC
Q 027602 111 NPSLLDLEHLSYLDLSFNDFQGVQI-PRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFGWLSG 189 (221)
Q Consensus 111 p~~l~~l~~L~~L~L~~n~l~g~~i-p~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~~~ 189 (221)
...|.++.+|+.+++..+ ++ .| ...|..+++|+.+.+..+ ++..-...|.++++|+.+++.+|... ...+..
T Consensus 304 ~~aF~~c~~L~~i~lp~~-v~--~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~ 376 (394)
T 4gt6_A 304 ESVFAGCISLKSIDIPEG-IT--QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAIST 376 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBC
T ss_pred ceeecCCCCcCEEEeCCc-cc--EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhc
Confidence 356788999999999765 55 34 356889999999999765 54333467889999999999987642 235667
Q ss_pred CCCCCEEEcccCCCC
Q 027602 190 LSFLEHLDFSTTRKM 204 (221)
Q Consensus 190 l~~L~~L~l~~N~l~ 204 (221)
..+|+.+.+..|.+.
T Consensus 377 ~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 377 DSGLQNLPVAPGSID 391 (394)
T ss_dssp CCCC-----------
T ss_pred cCCCCEEEeCCCCEE
Confidence 788998888776553
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.91 E-value=0.065 Score=44.93 Aligned_cols=82 Identities=13% Similarity=0.137 Sum_probs=57.9
Q ss_pred cccCCCCCcEEeCccCCCCCCccc-ccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC--cCCC
Q 027602 113 SLLDLEHLSYLDLSFNDFQGVQIP-RFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG--WLSG 189 (221)
Q Consensus 113 ~l~~l~~L~~L~L~~n~l~g~~ip-~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p--~~~~ 189 (221)
.+..+.+|+.+.+..+ ++ .|+ ..|..+++|+.+++..+ ++..-...|.++++|+.+++..| ++ .++ .|.+
T Consensus 292 ~F~~~~~L~~i~l~~~-i~--~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~--~I~~~aF~~ 364 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VK--FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR--KIGANAFQG 364 (394)
T ss_dssp TTTTCTTCCEEEECTT-CC--EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC--EECTTTBTT
T ss_pred cccccccccccccccc-cc--eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc--EehHHHhhC
Confidence 3556777888877654 44 343 45778889999998754 44233456788899999999776 53 343 7888
Q ss_pred CCCCCEEEcccC
Q 027602 190 LSFLEHLDFSTT 201 (221)
Q Consensus 190 l~~L~~L~l~~N 201 (221)
+.+|+.+++..+
T Consensus 365 C~~L~~i~lp~~ 376 (394)
T 4fs7_A 365 CINLKKVELPKR 376 (394)
T ss_dssp CTTCCEEEEEGG
T ss_pred CCCCCEEEECCC
Confidence 999999988654
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.12 E-value=0.072 Score=44.64 Aligned_cols=79 Identities=11% Similarity=0.181 Sum_probs=58.5
Q ss_pred CccccCCCCCcEEeCccCCCCCCcc-cccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC-cCC
Q 027602 111 NPSLLDLEHLSYLDLSFNDFQGVQI-PRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG-WLS 188 (221)
Q Consensus 111 p~~l~~l~~L~~L~L~~n~l~g~~i-p~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~~ 188 (221)
...|.++++|+.+++..+ ++ .| ...|..+++|+.+.+..+ ++..-...|.++++|+.+++..+- . .+. .|.
T Consensus 313 ~~aF~~c~~L~~i~lp~~-v~--~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~--~~~~~F~ 385 (394)
T 4fs7_A 313 EEAFESCTSLVSIDLPYL-VE--EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E--QYRYDFE 385 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CC--EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G--GGGGGBC
T ss_pred hhhhcCCCCCCEEEeCCc-cc--EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E--Ehhheec
Confidence 446788999999999754 66 45 356889999999999877 553334578899999999997653 2 233 677
Q ss_pred CCCCCCEE
Q 027602 189 GLSFLEHL 196 (221)
Q Consensus 189 ~l~~L~~L 196 (221)
++++|+.+
T Consensus 386 ~c~~L~~I 393 (394)
T 4fs7_A 386 DTTKFKWI 393 (394)
T ss_dssp TTCEEEEE
T ss_pred CCCCCcEE
Confidence 78877764
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.53 E-value=0.34 Score=40.09 Aligned_cols=84 Identities=13% Similarity=0.113 Sum_probs=60.5
Q ss_pred ccccCCCCCcEEeCccCCCCCCcc-cccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCCCCCCcCCC--cCC
Q 027602 112 PSLLDLEHLSYLDLSFNDFQGVQI-PRFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRNFLYVVNFG--WLS 188 (221)
Q Consensus 112 ~~l~~l~~L~~L~L~~n~l~g~~i-p~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N~l~~~~~p--~~~ 188 (221)
..+.++..|+.+.+..+ ++ .+ ...+..+.+|+.+.+..+ +...-...+.++++|+.+.+.++.++ .++ .|.
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~--~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~--~I~~~aF~ 307 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VT--SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE--TLEPRVFM 307 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CC--EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC--EECTTTTT
T ss_pred ccccCCccceEEEcCCC-cc--EeCccccceeehhcccccccc-ceeccccccccccccccccccccccc--eehhhhhc
Confidence 45667788888888665 44 33 345677888999988764 33222346788999999999988875 444 788
Q ss_pred CCCCCCEEEcccC
Q 027602 189 GLSFLEHLDFSTT 201 (221)
Q Consensus 189 ~l~~L~~L~l~~N 201 (221)
++.+|+.+.+..+
T Consensus 308 ~c~~L~~i~lp~~ 320 (379)
T 4h09_A 308 DCVKLSSVTLPTA 320 (379)
T ss_dssp TCTTCCEEECCTT
T ss_pred CCCCCCEEEcCcc
Confidence 8999999988643
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.30 E-value=1.2e+02 Score=19.67 Aligned_cols=40 Identities=10% Similarity=0.079 Sum_probs=26.0
Q ss_pred ccccCCCCCcEEEccCCcCCCCCccccCCCCCCCEEeCcCC
Q 027602 137 RFIGSMGNQKYLNLLGSQFGGVIPHQLGNLSSLRYLDLSRN 177 (221)
Q Consensus 137 ~~~~~l~~L~~L~l~~N~l~g~~p~~l~~l~~L~~L~l~~N 177 (221)
..|..+++|+.+.+..+- +..-...|.++.+|+.+.+...
T Consensus 14 ~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred HHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 456777888888877653 3223346677788888877653
Done!