BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027603
         (221 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7XKC0|ANM61_ORYSJ Probable protein arginine N-methyltransferase 6.1 OS=Oryza sativa
           subsp. japonica GN=PRMT6.1 PE=2 SV=2
          Length = 391

 Score = 31.2 bits (69), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 26/105 (24%)

Query: 9   MTSLLLLLLSLPSISLA----YRPGDIV----------PMSKMSQYHNSRTVWHDVIGKH 54
           M  +LL    LPS+  A     +PG ++          P++   +Y  S   W DV G  
Sbjct: 158 MGYMLLYESMLPSVLFARDKWLKPGGLILPSHATLFMAPITNSERYEGSVDFWSDVYG-- 215

Query: 55  CPIFAVNREALIPIAKPTGFTGADPVKISFQVGREKFRVPWLFVI 99
                +N  AL+P+AK   FT  +P   S ++   +  + W FV+
Sbjct: 216 -----INMSALVPLAKK--FTSEEP---SIEIIGGENVLSWPFVV 250


>sp|A2XYY8|ANM61_ORYSI Probable protein arginine N-methyltransferase 6.1 OS=Oryza sativa
           subsp. indica GN=PRMT6.1 PE=2 SV=1
          Length = 379

 Score = 31.2 bits (69), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 26/105 (24%)

Query: 9   MTSLLLLLLSLPSISLA----YRPGDIV----------PMSKMSQYHNSRTVWHDVIGKH 54
           M  +LL    LPS+  A     +PG ++          P++   +Y  S   W DV G  
Sbjct: 158 MGYMLLYESMLPSVLFARDKWLKPGGLILPSHATLFMAPITNSERYEGSVDFWSDVYG-- 215

Query: 55  CPIFAVNREALIPIAKPTGFTGADPVKISFQVGREKFRVPWLFVI 99
                +N  AL+P+AK   FT  +P   S ++   +  + W FV+
Sbjct: 216 -----INMSALVPLAK--KFTSEEP---SIEIIGGENVLSWPFVV 250


>sp|Q8A9K9|SYI_BACTN Isoleucine--tRNA ligase OS=Bacteroides thetaiotaomicron (strain
           ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
           GN=ileS PE=3 SV=1
          Length = 1162

 Score = 31.2 bits (69), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 14/80 (17%)

Query: 76  GADPVKISFQVGREKFRVPWLFVINRKSSQVPMIDVHLRYSGNDLLGVTAKIVDMPQRYV 135
           GAD   ++   G     +P LF+IN+K    PM+         DL G    + ++ + +V
Sbjct: 368 GADDANVARAAG-----IPSLFMINKKGETRPMV---------DLTGKFYMLDELDENFV 413

Query: 136 EIHPDLPKYFWQPESWPKHV 155
           +   D+ KY     +W K+ 
Sbjct: 414 KECVDVDKYKEYQGAWVKNA 433


>sp|Q67MD4|ADDB_SYMTH ATP-dependent helicase/deoxyribonuclease subunit B
           OS=Symbiobacterium thermophilum (strain T / IAM 14863)
           GN=addB PE=3 SV=1
          Length = 1165

 Score = 30.4 bits (67), Expect = 9.2,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 113 LRYSGNDLLGVTAKIVDMPQRYVEIHPDLPKYFWQPESWPKHVLIRYTWEEQS 165
            RY   DL GV+   +D+ + YV  H    + + Q E W    L RYT EE +
Sbjct: 405 FRYLKTDLTGVSRAEIDLLENYVIEHGIRGRAWQQQEPW--QYLRRYTLEEDA 455


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.138    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,535,990
Number of Sequences: 539616
Number of extensions: 3278429
Number of successful extensions: 6844
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6844
Number of HSP's gapped (non-prelim): 6
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)