Query 027603
Match_columns 221
No_of_seqs 26 out of 28
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 21:07:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nrp_A Periplasmic protein-pro 35.0 48 0.0016 27.5 4.6 83 23-117 56-151 (160)
2 3n8e_A Stress-70 protein, mito 31.4 49 0.0017 26.9 4.1 23 105-127 99-121 (182)
3 1dx8_A Rubredoxin; electron tr 30.6 33 0.0011 24.6 2.6 38 43-80 30-69 (70)
4 3h0x_A 78 kDa glucose-regulate 30.5 73 0.0025 24.9 4.9 23 105-127 79-101 (152)
5 3ssc_A ECOKMCRBC, 5-methylcyto 29.4 95 0.0032 26.1 5.6 50 78-127 31-82 (170)
6 3dqg_A Heat shock 70 kDa prote 26.9 64 0.0022 25.3 3.9 22 105-126 79-100 (151)
7 3lzq_A P19 protein; copper bin 26.8 53 0.0018 27.3 3.6 90 22-117 53-156 (159)
8 1dpj_B IA3, proteinase inhibit 26.2 20 0.0007 22.7 0.7 11 190-200 9-19 (33)
9 4e81_A Chaperone protein DNAK; 22.3 61 0.0021 26.9 3.2 25 103-127 78-102 (219)
10 1x4p_A Putative splicing facto 21.9 37 0.0013 24.7 1.5 12 195-206 10-21 (66)
11 1q5l_A Chaperone protein DNAK; 20.6 1.1E+02 0.0036 23.5 4.0 23 105-127 96-118 (135)
No 1
>3nrp_A Periplasmic protein-probably involved in high-AFF transport; immunoglobulin-like fold, iron transporter, copper binding; 1.60A {Escherichia coli} PDB: 3nrq_A
Probab=35.02 E-value=48 Score=27.55 Aligned_cols=83 Identities=12% Similarity=0.215 Sum_probs=52.5
Q ss_pred hccCCCCCccc--------ccccceeccCcceeecccCCCCCcccccceEEeeccccCCCCCCCceeEEEEeCCCcceec
Q 027603 23 SLAYRPGDIVP--------MSKMSQYHNSRTVWHDVIGKHCPIFAVNREALIPIAKPTGFTGADPVKISFQVGREKFRVP 94 (221)
Q Consensus 23 ~~ayr~GDiVp--------~sr~~Q~H~sRT~WhDl~g~hcP~F~vdr~V~vpipKP~g~~~~d~YKIsFsf~~dkf~tp 94 (221)
.++|-.||.|| +.+-+..-.+.|-|.-+. +.-|.||-|=. +.+...|+++|.++..--. .
T Consensus 56 ~~Gf~~G~~vPyL~v~y~i~~~~~~~v~~g~~mPMvA-~dGpHYG~Nvk----------L~G~G~Y~v~~~I~pPs~~-~ 123 (160)
T 3nrp_A 56 KNGFGAGEWIPYLTISYTLVNNDTGEKQEGTFMPMVA-SDGPHYGANIK----------MMGVGNYKVTYHIEPPSKA-G 123 (160)
T ss_dssp SSSCCTTCBCCSCEEEEEEEETTTCCEEEEECEEEEE-TTEEEEEEEEC----------CCSSEEEEEEEEEECGGGG-T
T ss_pred cCcCcCCCCCCCceeEEEEEeCCCCeEEEeeccceec-CCCCccccccC----------CCCCccEEEEEEECCCccc-c
Confidence 45688899999 333332233455676666 88899998743 2466899999999865311 3
Q ss_pred eEEEecCCC-----CCcCeEEEEEEEeC
Q 027603 95 WLFVINRKS-----SQVPMIDVHLRYSG 117 (221)
Q Consensus 95 Wl~vi~~~~-----~~vpmIDv~l~ysg 117 (221)
|+.-.|+-+ .+.=-.+++|.|+|
T Consensus 124 ~~rHtDketGV~~w~~p~t~~~~F~y~g 151 (160)
T 3nrp_A 124 MHRHTDSETGVGRWWKPFDVSYEFKYVG 151 (160)
T ss_dssp CEEBCSTTTCCCCCCCCEEEEEEEEECC
T ss_pred cceecccccCCcccCCCEEEEEEEEecC
Confidence 555555543 12234567888887
No 2
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens}
Probab=31.42 E-value=49 Score=26.95 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.0
Q ss_pred CcCeEEEEEEEeCCeEeeeeeee
Q 027603 105 QVPMIDVHLRYSGNDLLGVTAKI 127 (221)
Q Consensus 105 ~vpmIDv~l~ysg~dllgVtakv 127 (221)
-+|.|+|+|.+.-+-|+-|+|+-
T Consensus 99 G~~~IeVtf~iD~nGiL~VsA~d 121 (182)
T 3n8e_A 99 GVPQIEVTFDIDANGIVHVSAKD 121 (182)
T ss_dssp TCSCEEEEEEECTTCCEEEEEEE
T ss_pred CCeeEEEEEEEecCCEEEEEEEE
Confidence 46899999999999999999983
No 3
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=30.60 E-value=33 Score=24.57 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=31.0
Q ss_pred CcceeecccCC-CCCcccccceEEeeccc-cCCCCCCCce
Q 027603 43 SRTVWHDVIGK-HCPIFAVNREALIPIAK-PTGFTGADPV 80 (221)
Q Consensus 43 sRT~WhDl~g~-hcP~F~vdr~V~vpipK-P~g~~~~d~Y 80 (221)
..|.|.|+... .||.-+.+++-+.++.+ |.||.++-.|
T Consensus 30 pGT~f~~lPddw~CP~Cga~K~~F~~~~~~~sgf~en~~y 69 (70)
T 1dx8_A 30 PGTPFVDLSDSFMCPACRSPKNQFKSIKKVIAGFAENQKY 69 (70)
T ss_dssp SSCCGGGSCTTCBCTTTCCBGGGEEECCCBCCCSCCCSCC
T ss_pred CCCchhhCCCCCcCCCCCCCHHHceEccccCCChhhhccc
Confidence 46889998654 79999999999998876 6689887655
No 4
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Probab=30.51 E-value=73 Score=24.87 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=21.0
Q ss_pred CcCeEEEEEEEeCCeEeeeeeee
Q 027603 105 QVPMIDVHLRYSGNDLLGVTAKI 127 (221)
Q Consensus 105 ~vpmIDv~l~ysg~dllgVtakv 127 (221)
-.|.|+|+|.+.-+-|+-|+|+.
T Consensus 79 G~~~I~Vtf~iD~nGiL~V~a~d 101 (152)
T 3h0x_A 79 GVPQIEVTFALDANGILKVSATD 101 (152)
T ss_dssp TCSCEEEEEEECTTSEEEEEEEE
T ss_pred CCceEEEEEEEcCCCEEEEEEEE
Confidence 46899999999999999999983
No 5
>3ssc_A ECOKMCRBC, 5-methylcytosine-specific restriction enzyme B; protein-DNA complex; HET: DNA 5CM; 2.10A {Escherichia coli} PDB: 3ssd_A* 3sse_A*
Probab=29.37 E-value=95 Score=26.11 Aligned_cols=50 Identities=22% Similarity=0.399 Sum_probs=35.9
Q ss_pred CceeEEEEeCCCcc-eeceEEEecCCCCCcCeE-EEEEEEeCCeEeeeeeee
Q 027603 78 DPVKISFQVGREKF-RVPWLFVINRKSSQVPMI-DVHLRYSGNDLLGVTAKI 127 (221)
Q Consensus 78 d~YKIsFsf~~dkf-~tpWl~vi~~~~~~vpmI-Dv~l~ysg~dllgVtakv 127 (221)
..|+|..|||..++ .+|||-+.+++.+.-.=| -|-|.|++.+-+=++.-|
T Consensus 31 ~~~~Vk~S~GqGn~A~IPWia~~~~~~tt~~GiY~VyLf~~d~~~LyLs~Gv 82 (170)
T 3ssc_A 31 RNLRVKLSFGYGNFTSIPWFAFLGEGQEASNGIYPVILYYKDFDELVLAYGI 82 (170)
T ss_dssp TTEEEEEEEESSSEEEEEEEEEECTTCCSSSSEEEEEEEEGGGTEEEEEEEE
T ss_pred CCeEEEEeccCCccccCcEEEEEcCCcceecceEEEEEEEcCCCEEEEEEEe
Confidence 67999999998887 699999999975544444 345566666655555554
No 6
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans}
Probab=26.87 E-value=64 Score=25.32 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=20.7
Q ss_pred CcCeEEEEEEEeCCeEeeeeee
Q 027603 105 QVPMIDVHLRYSGNDLLGVTAK 126 (221)
Q Consensus 105 ~vpmIDv~l~ysg~dllgVtak 126 (221)
-.|.|+|+|.+.-+-|+-|+|+
T Consensus 79 G~~~IeVtf~iD~nGiL~Vsa~ 100 (151)
T 3dqg_A 79 GVPQVEVTFDIDANGIVNVSAR 100 (151)
T ss_dssp TCSCEEEEEEECTTSEEEEEEE
T ss_pred CCcEEEEEEEeccCcEEEEEEE
Confidence 4699999999999999999998
No 7
>3lzq_A P19 protein; copper binding, iron transport, iron uptake, P19 delition, T protein; 1.41A {Campylobacter jejuni} PDB: 3lzn_A 3lzo_A 3lzp_A 3lzl_A 3lzr_A
Probab=26.76 E-value=53 Score=27.31 Aligned_cols=90 Identities=14% Similarity=0.231 Sum_probs=55.8
Q ss_pred hhccCCCCCccc--------ccccceeccCcceeecccCCCCCcccccceEEeeccc-cCCCCCCCceeEEEEeCCCcce
Q 027603 22 ISLAYRPGDIVP--------MSKMSQYHNSRTVWHDVIGKHCPIFAVNREALIPIAK-PTGFTGADPVKISFQVGREKFR 92 (221)
Q Consensus 22 ~~~ayr~GDiVp--------~sr~~Q~H~sRT~WhDl~g~hcP~F~vdr~V~vpipK-P~g~~~~d~YKIsFsf~~dkf~ 92 (221)
-.++|-.||.|| +.+-+..-.+.|-|--+ ++.-|.||-|= .+|+ ..|..+...|+++|.++..--.
T Consensus 53 n~~Gf~~G~wvPyL~v~y~i~~~~~~~v~~g~~mPMv-A~dGpHYG~Nv----kL~~~~~~~~G~G~Y~v~~~I~pP~~~ 127 (159)
T 3lzq_A 53 NPNGFPEGFWMPYLTIAYELKNTDTGAIKRGTLMPMV-ADDGPHYGANI----AMEKDKKGGFGVGNYELTFYISNPEKQ 127 (159)
T ss_dssp CTTCCCTTCBCCSCEEEEEEEETTTCCEEEEECEEEE-ETTEEEEEEEE----CSTTCTTCCCSSEEEEEEEEEECGGGG
T ss_pred CCCcccCCcCCcCceEEEEEEeCCCCeEEEeecceee-cCCCCccccce----eccccccCCCCCccEEEEEEECCcccc
Confidence 357799999999 33333233345667744 49999999772 2332 2355678899999999866311
Q ss_pred eceEEEecCCCC-----CcCeEEEEEEEeC
Q 027603 93 VPWLFVINRKSS-----QVPMIDVHLRYSG 117 (221)
Q Consensus 93 tpWl~vi~~~~~-----~vpmIDv~l~ysg 117 (221)
.|+.-.|+-+. +.=-.+++|.|+|
T Consensus 128 -~~~rHtDkeTGvg~w~ep~t~~~~F~y~g 156 (159)
T 3lzq_A 128 -GFGRHVDEETGVGKWFEPFKVDYKFKYTG 156 (159)
T ss_dssp -TCEEECSTTTCCCCCCCCEEEEEEEEECC
T ss_pred -ccceecccccCcccccCCEEEEEEEEecC
Confidence 35555554321 1224567788876
No 8
>1dpj_B IA3, proteinase inhibitor IA3 peptide; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: a.137.7.1 PDB: 1g0v_B*
Probab=26.18 E-value=20 Score=22.70 Aligned_cols=11 Identities=45% Similarity=0.634 Sum_probs=9.3
Q ss_pred hhhhccHHHHH
Q 027603 190 YILESSREKFT 200 (221)
Q Consensus 190 yil~~~~~kl~ 200 (221)
-|.|||+|||.
T Consensus 9 eifqsskeklq 19 (33)
T 1dpj_B 9 EIFQSSKEKLQ 19 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhHHHhc
Confidence 36899999995
No 9
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=22.29 E-value=61 Score=26.88 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.9
Q ss_pred CCCcCeEEEEEEEeCCeEeeeeeee
Q 027603 103 SSQVPMIDVHLRYSGNDLLGVTAKI 127 (221)
Q Consensus 103 ~~~vpmIDv~l~ysg~dllgVtakv 127 (221)
..-+|.|+|+|.+.-+-|+-|+|+.
T Consensus 78 p~G~~~IeVtf~iD~nGiL~V~a~d 102 (219)
T 4e81_A 78 PRGMPQIEVTFDIDADGILHVSAKD 102 (219)
T ss_dssp STTCSCEEEEEEECTTCCEEEEEEE
T ss_pred CCCCceEEEEEEeCCCCCEeeeeec
Confidence 3356999999999999999999983
No 10
>1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain, SFRS14 protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=21.93 E-value=37 Score=24.74 Aligned_cols=12 Identities=8% Similarity=0.202 Sum_probs=9.4
Q ss_pred cHHHHHHHHHHH
Q 027603 195 SREKFTRFLQET 206 (221)
Q Consensus 195 ~~~kl~rf~~e~ 206 (221)
.-|||+|||.|-
T Consensus 10 ~ieKLa~fVaeG 21 (66)
T 1x4p_A 10 TIDQLVKRVIEG 21 (66)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcc
Confidence 358999998863
No 11
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1
Probab=20.63 E-value=1.1e+02 Score=23.47 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.8
Q ss_pred CcCeEEEEEEEeCCeEeeeeeee
Q 027603 105 QVPMIDVHLRYSGNDLLGVTAKI 127 (221)
Q Consensus 105 ~vpmIDv~l~ysg~dllgVtakv 127 (221)
-.|.|+|+|.+..+-++-|+|+-
T Consensus 96 G~~~IeVtf~iD~nGiL~V~a~d 118 (135)
T 1q5l_A 96 GMPQIEVTFDIDADGILHVSAKD 118 (135)
T ss_dssp SSCCEEEEEEECTTSEEEEEEEE
T ss_pred ceeEEEEEEEECCCCEEEEEEEE
Confidence 45799999999999999999983
Done!