Query 027603
Match_columns 221
No_of_seqs 26 out of 28
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 21:07:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027603.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027603hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yuwa1 b.130.1.1 (A:385-543) 33.8 20 0.0014 26.8 4.0 29 99-127 80-108 (159)
2 d1dx8a_ g.41.5.1 (A:) Rubredox 33.4 13 0.00093 25.4 2.6 38 43-80 30-69 (70)
3 d2g0ia1 d.64.2.1 (A:1-111) Hyp 32.1 20 0.0015 25.3 3.7 19 108-126 1-19 (111)
4 d1dpjb_ a.137.7.1 (B:) Protein 30.4 7.4 0.00054 22.7 0.7 11 190-200 8-18 (29)
5 d1pzra_ a.38.2.1 (A:) Erythron 29.9 11 0.00083 25.0 1.8 14 196-209 30-43 (60)
6 d1u00a2 b.130.1.1 (A:389-503) 29.5 25 0.0018 24.9 3.8 28 102-129 74-101 (115)
7 d1dkza2 b.130.1.1 (A:389-506) 29.3 28 0.002 24.8 4.1 30 99-128 74-103 (118)
8 d1v43a1 b.40.6.3 (A:246-299) H 23.0 18 0.0013 22.6 1.7 51 104-157 1-51 (54)
9 d1s4ca1 b.82.2.7 (A:1-143) Hyp 21.0 45 0.0032 24.3 3.9 20 107-126 67-86 (143)
10 d2nn6i1 b.40.4.5 (I:61-185) Ex 16.3 22 0.0016 25.7 1.1 14 21-34 57-70 (125)
No 1
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=33.78 E-value=20 Score=26.84 Aligned_cols=29 Identities=31% Similarity=0.411 Sum_probs=24.4
Q ss_pred ecCCCCCcCeEEEEEEEeCCeEeeeeeee
Q 027603 99 INRKSSQVPMIDVHLRYSGNDLLGVTAKI 127 (221)
Q Consensus 99 i~~~~~~vpmIDv~l~ysg~dllgVtakv 127 (221)
+.....-.|.|+|+|.|.-+-|+-|+|+.
T Consensus 80 ip~~~~G~~~I~Vtf~id~nGil~V~A~d 108 (159)
T d1yuwa1 80 IPPAPRGVPQIEVTFDIDANGILNVSAVD 108 (159)
T ss_dssp CCCCSTTCCCEEEEEEECTTCCEEEEEEE
T ss_pred CCcCCCCCceEEEEEEEcCCCeEEEEEEE
Confidence 33455577889999999999999999994
No 2
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}
Probab=33.42 E-value=13 Score=25.35 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=31.6
Q ss_pred CcceeecccCC-CCCcccccceEEeeccc-cCCCCCCCce
Q 027603 43 SRTVWHDVIGK-HCPIFAVNREALIPIAK-PTGFTGADPV 80 (221)
Q Consensus 43 sRT~WhDl~g~-hcP~F~vdr~V~vpipK-P~g~~~~d~Y 80 (221)
..|.|.||... .||.=+..|+.+.++.+ +.||..+--|
T Consensus 30 pGT~F~dLP~dW~CP~Cga~K~~F~~~~~~~agf~~N~~y 69 (70)
T d1dx8a_ 30 PGTPFVDLSDSFMCPACRSPKNQFKSIKKVIAGFAENQKY 69 (70)
T ss_dssp SSCCGGGSCTTCBCTTTCCBGGGEEECCCBCCCSCCCSCC
T ss_pred CCCChHHCCCCCCCcCCCCcHHHheEcccccCChHHhccc
Confidence 47999999977 89999999999999986 5688776544
No 3
>d2g0ia1 d.64.2.1 (A:1-111) Hypothetical protein Smu.848 {Streptococcus mutans [TaxId: 1309]}
Probab=32.11 E-value=20 Score=25.28 Aligned_cols=19 Identities=21% Similarity=0.106 Sum_probs=18.2
Q ss_pred eEEEEEEEeCCeEeeeeee
Q 027603 108 MIDVHLRYSGNDLLGVTAK 126 (221)
Q Consensus 108 mIDv~l~ysg~dllgVtak 126 (221)
||.+++++.+|.+.+.+++
T Consensus 1 MI~v~~~~~~~~i~~f~v~ 19 (111)
T d2g0ia1 1 MIQATFIRRKGILESVELT 19 (111)
T ss_dssp CEEEEEEEETTEEEEEEEE
T ss_pred CEEEEEEEcCCeEEEEEEE
Confidence 8999999999999999988
No 4
>d1dpjb_ a.137.7.1 (B:) Proteinase A inhibitor IA3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.37 E-value=7.4 Score=22.66 Aligned_cols=11 Identities=45% Similarity=0.634 Sum_probs=9.3
Q ss_pred hhhhccHHHHH
Q 027603 190 YILESSREKFT 200 (221)
Q Consensus 190 yil~~~~~kl~ 200 (221)
-|.|||+|||.
T Consensus 8 eifqsskeklq 18 (29)
T d1dpjb_ 8 EIFQSSKEKLQ 18 (29)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhHHHhc
Confidence 36899999995
No 5
>d1pzra_ a.38.2.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=29.91 E-value=11 Score=24.99 Aligned_cols=14 Identities=50% Similarity=0.828 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhc
Q 027603 196 REKFTRFLQETVAE 209 (221)
Q Consensus 196 ~~kl~rf~~e~v~e 209 (221)
+|||.|+++.+|+|
T Consensus 30 edkLRRYLkRTv~e 43 (60)
T d1pzra_ 30 EEKLRRYLKRTVTE 43 (60)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 79999999999987
No 6
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=29.49 E-value=25 Score=24.86 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=23.1
Q ss_pred CCCCcCeEEEEEEEeCCeEeeeeeeeec
Q 027603 102 KSSQVPMIDVHLRYSGNDLLGVTAKIVD 129 (221)
Q Consensus 102 ~~~~vpmIDv~l~ysg~dllgVtakvvd 129 (221)
...-.|.|+|+|.|+-+-++-|+|.-++
T Consensus 74 ~p~G~~~I~Vtf~id~nGiL~V~A~d~~ 101 (115)
T d1u00a2 74 LPAGGAHIRVTFQVDADGLLSVTAMEKS 101 (115)
T ss_dssp CSTTCSCEEEEEEECTTCCEEEEEEETT
T ss_pred CccccccEEEEEEccCCceEEEEEEECC
Confidence 3345889999999999999999998543
No 7
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Probab=29.31 E-value=28 Score=24.76 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=24.3
Q ss_pred ecCCCCCcCeEEEEEEEeCCeEeeeeeeee
Q 027603 99 INRKSSQVPMIDVHLRYSGNDLLGVTAKIV 128 (221)
Q Consensus 99 i~~~~~~vpmIDv~l~ysg~dllgVtakvv 128 (221)
+.....-.|.|+|+|.|+.+-++-|+|+-+
T Consensus 74 ip~~p~G~~~I~Vtf~iD~nGiL~V~a~d~ 103 (118)
T d1dkza2 74 INPAPRGMPQIEVTFDIDADGILHVSAKDK 103 (118)
T ss_dssp CCSCCTTCSCEEEEEEECTTCCEEEEEEET
T ss_pred CccCCCCCcEEEEEEEecCCCeEEEEEEEC
Confidence 444445678899999999999999999843
No 8
>d1v43a1 b.40.6.3 (A:246-299) Hypothetical protein PH0022, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=23.03 E-value=18 Score=22.64 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=27.1
Q ss_pred CCcCeEEEEEEEeCCeEeeeeeeeecCChhhhhhCCCCcccccCCCCCCceEEE
Q 027603 104 SQVPMIDVHLRYSGNDLLGVTAKIVDMPQRYVEIHPDLPKYFWQPESWPKHVLI 157 (221)
Q Consensus 104 ~~vpmIDv~l~ysg~dllgVtakvvdmp~~yv~~H~~~~~ef~d~~~WPKhvlV 157 (221)
|.+|+++.++ +++.+..=..+ +.+|..+.+.=.++..+..--+-.|.|+.+
T Consensus 1 P~MNfl~~~v--~~~~~~~~~~~-i~lp~~~~~~l~~~~g~~v~lGIRPE~i~~ 51 (54)
T d1v43a1 1 PEMNILEVSV--GDGYLEGRGFR-IELPQDLMDLLKDYVGKTVLFGIRPEHMTV 51 (54)
T ss_dssp SCCEEEEEEE--ETTEEEETTEE-EECCC--CCTTGGGBTSEEEEEECGGGEEE
T ss_pred CCceeEEEEE--ECCEEEECCEE-EECCHHHHHHHhhcCCCEEEEEEChhhcEe
Confidence 4678888887 56666554444 688887653322222222223445666554
No 9
>d1s4ca1 b.82.2.7 (A:1-143) Hypothetical protein HI0227 {Haemophilus influenzae [TaxId: 727]}
Probab=21.03 E-value=45 Score=24.26 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=17.8
Q ss_pred CeEEEEEEEeCCeEeeeeee
Q 027603 107 PMIDVHLRYSGNDLLGVTAK 126 (221)
Q Consensus 107 pmIDv~l~ysg~dllgVtak 126 (221)
.+|||++.-+|.+..|++..
T Consensus 67 ~YiDIq~vl~G~E~i~~~~~ 86 (143)
T d1s4ca1 67 EYLDVQVLIRGTENIEVGAT 86 (143)
T ss_dssp SEEEEEEEEESCEEEEECCS
T ss_pred ceEEEEEEeeCceEEEEecC
Confidence 58999999999999998754
No 10
>d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.28 E-value=22 Score=25.66 Aligned_cols=14 Identities=50% Similarity=0.819 Sum_probs=11.3
Q ss_pred hhhccCCCCCcccc
Q 027603 21 SISLAYRPGDIVPM 34 (221)
Q Consensus 21 ~~~~ayr~GDiVp~ 34 (221)
.+.+.||+||+|.-
T Consensus 57 ~m~~~fr~GDiV~A 70 (125)
T d2nn6i1 57 EIYKSFRPGDIVLA 70 (125)
T ss_dssp CGGGTCCSSSEEEE
T ss_pred hHHHhcCCCCEEEE
Confidence 36688999999973
Done!