BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027604
MGNCVSSHKSTDMKLTVQIQSPIKENKTVKTDQHMAAGAGQSFLGHTSAMGQADSFRDLS
NTEEAFLDSHPWLDSDCEDYFSVNGDLTPSHGSTPVHEKSFIEDPAPQPQLDKIPHTDSV
PDSISKPSPTLFELFRESFGDNPANGNQNLHGHNEAIPTISPPKSTRNPFTRSSETTPYR
VSHDRKENSIQSAQCCIPSFMRSRSFSERKKRLSSANTDGR

High Scoring Gene Products

Symbol, full name Information P value
AT3G01860 protein from Arabidopsis thaliana 9.8e-16
AT3G27210 protein from Arabidopsis thaliana 3.4e-13
AT5G40860 protein from Arabidopsis thaliana 1.0e-07

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027604
        (221 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2082284 - symbol:AT3G01860 "AT3G01860" species...   197  9.8e-16   1
TAIR|locus:2086533 - symbol:AT3G27210 "AT3G27210" species...   173  3.4e-13   1
TAIR|locus:2164511 - symbol:AT5G40860 "AT5G40860" species...   138  1.0e-07   1


>TAIR|locus:2082284 [details] [associations]
            symbol:AT3G01860 "AT3G01860" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0046686 "response to cadmium ion"
            evidence=IEP] [GO:0006612 "protein targeting to membrane"
            evidence=RCA] [GO:0009963 "positive regulation of flavonoid
            biosynthetic process" evidence=RCA] [GO:0010363 "regulation of
            plant-type hypersensitive response" evidence=RCA] GO:GO:0046686
            EMBL:CP002686 EMBL:AK229823 IPI:IPI00546056 RefSeq:NP_186835.2
            UniGene:At.41221 PRIDE:Q0WMJ7 EnsemblPlants:AT3G01860.1
            GeneID:820070 KEGG:ath:AT3G01860 TAIR:At3g01860 OMA:CLWIRTP
            PhylomeDB:Q0WMJ7 Genevestigator:Q3EBD5 Uniprot:Q0WMJ7
        Length = 223

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 71/231 (30%), Positives = 115/231 (49%)

Query:     1 MGNCVSSHKSTDMKLT---VQIQSPI-KENKT--VKTDQHMAAGAGQSFLGHTSAMGQAD 54
             MG+CVSS +S     +   V++ S I K + T  +KTD  + +    +  G+       D
Sbjct:     1 MGSCVSSSQSKSSSASDSVVKLASFISKPDSTPPLKTDVMITSS---TINGNPPI----D 53

Query:    55 SFR-DLSNTEEA-FLDSHPWLDSDCEDYF-SVNGDLTPSHGSTPVHEKSFIEDPAPQPQL 111
             S R D  N E+  F DS  WLDSDC+D F SV G+ TPS G+TPVH K F +    Q + 
Sbjct:    54 SGRWDSGNKEDMIFFDSRGWLDSDCDDDFMSVGGEFTPSRGTTPVHHK-FCDQTPHQGEE 112

Query:   112 DKIPHTDSVPD-SISKPSPTLFELFRESFGDNPANGNQNLHGHNEAIPTISPPKSTRNPF 170
             +K  H +   + S +     L ELF+E+  D      ++     +A   +      R P 
Sbjct:   113 NK--HGEEEEEASPTDNKKRLLELFKET-QDEEDEEEEDYVAEGKARACLW----IRTPV 165

Query:   171 TRSSETTPYRVSHDRKEN--SIQSAQC--CIPSFMRSRSFSERKKRLSSAN 217
               S+  TPY  + +R++    ++SA    C+P  +   SF++R++ + +++
Sbjct:   166 RSSAPATPYNNNKERQQKFKRVRSAALGRCVPRLVSCSSFTDRRRNMMTSH 216


>TAIR|locus:2086533 [details] [associations]
            symbol:AT3G27210 "AT3G27210" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0006612 "protein targeting to membrane" evidence=RCA]
            [GO:0009963 "positive regulation of flavonoid biosynthetic process"
            evidence=RCA] [GO:0010286 "heat acclimation" evidence=RCA]
            [GO:0010363 "regulation of plant-type hypersensitive response"
            evidence=RCA] GO:GO:0005886 EMBL:CP002686 GenomeReviews:BA000014_GR
            EMBL:AP000381 EMBL:AY049232 EMBL:AY079119 IPI:IPI00519638
            RefSeq:NP_566811.1 UniGene:At.6167 IntAct:Q9LK32 STRING:Q9LK32
            PaxDb:Q9LK32 PRIDE:Q9LK32 EnsemblPlants:AT3G27210.1 GeneID:822340
            KEGG:ath:AT3G27210 TAIR:At3g27210 eggNOG:NOG279001
            HOGENOM:HOG000155287 InParanoid:Q9LK32 OMA:NSPIRAD PhylomeDB:Q9LK32
            ProtClustDB:CLSN2688826 Genevestigator:Q9LK32 Uniprot:Q9LK32
        Length = 234

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 64/207 (30%), Positives = 90/207 (43%)

Query:    17 VQIQSPIKENKTVKTDQHMAAGAGQSFLGHTSAMGQADSFRDLSNTEEAFLDSHPWLDSD 76
             V I SP  +       +  +  A  +     S    + S +   + +E F DS PWL SD
Sbjct:    36 VSILSPSVKKSFESPRKSTSIPANNNLTPVKSRWSFSSSKKSFGSKDETFFDSQPWLQSD 95

Query:    77 CEDYF-SVNGDLTPSHGSTPVHEKSFIEDPAPQPQLDKIPHTDSVPD-SISKPSPT---- 130
              +D F SVNGD TPS G+TP  + SF + P   P+   +   +  P    S P+P     
Sbjct:    96 SDDDFHSVNGDFTPSLGNTP--KSSFSDRP---PRFHNLIFHEKKPSRGSSSPAPLPRRK 150

Query:   131 -LFELFRESFGDNPANGNQNLHGHNEAIPTISPPKSTRNPFTRSSETTPYRVSHDRKENS 189
              L ELFR+S  +          G + AI T  P  S  N    S E     +  + K+ S
Sbjct:   151 KLGELFRDSIREEREES-----GSSSAIST--PYLSGAN----SREFNDTAIEKEEKKKS 199

Query:   190 IQSAQCCIPSFMR-SRSFSERKKRLSS 215
                   C+P F     SF ER+K++SS
Sbjct:   200 NWHHHRCLPGFSSCGGSFMERRKKMSS 226


>TAIR|locus:2164511 [details] [associations]
            symbol:AT5G40860 "AT5G40860" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0010093 "specification of floral organ identity"
            evidence=RCA] [GO:0048440 "carpel development" evidence=RCA]
            EMBL:CP002688 ProtClustDB:CLSN2688826 EMBL:DQ447025 IPI:IPI00759303
            RefSeq:NP_198902.2 UniGene:At.70791 EnsemblPlants:AT5G40860.1
            GeneID:834087 KEGG:ath:AT5G40860 TAIR:At5g40860 InParanoid:Q1PDP3
            OMA:FGSSKDE PhylomeDB:Q1PDP3 ArrayExpress:Q1PDP3
            Genevestigator:Q1PDP3 Uniprot:Q1PDP3
        Length = 246

 Score = 138 (53.6 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 59/204 (28%), Positives = 86/204 (42%)

Query:    20 QSPIKENKT-VKTDQHMAAGAGQSFLGHTSAMGQADSFRDLSNTEEAFLDSHPWLDSDCE 78
             +SP+KEN   V T + +  G         S      SF   S+ +E + DSH W  SD E
Sbjct:    49 ESPVKENLAPVATPKTVDNGLSAQVKSRWSFSSSKRSFG--SSKDETYFDSHQWQQSDSE 106

Query:    79 D-YFSVNGDLTPSHGSTP---VHEK-SFIEDPAPQPQLDKIPHTDSVPDSISKPSPTLFE 133
             D ++SV GD TPS G+TP   + EK   I  P  + +  ++  + S      K    L E
Sbjct:   107 DDFYSVRGDFTPSVGNTPRCSISEKLPRIHSPLFEGEKPRVSFSHSPAPRRKK----LGE 162

Query:   134 LFRESFGDNPANGNQNLHGHNEAIPTISPPKSTRNPFTRSSETTPYRVSHDRKEN---SI 190
             LFR+S  +  A     L   +E        KS ++    S E      S   K+N    +
Sbjct:   163 LFRDSIREERA---VILEESSE----YQSEKSKKSSCDNSGELKVIEESVKEKKNLKSPL 215

Query:   191 QSAQCCIPSF--MRSRSFSERKKR 212
                  C+P F   +     +RKK+
Sbjct:   216 NYHHRCLPRFSSFKGSLMDKRKKK 239


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.126   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      221       221   0.00095  112 3  11 23  0.47    33
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  588 (63 KB)
  Total size of DFA:  176 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.09u 0.07s 26.16t   Elapsed:  00:00:03
  Total cpu time:  26.09u 0.07s 26.16t   Elapsed:  00:00:03
  Start:  Sat May 11 00:52:53 2013   End:  Sat May 11 00:52:56 2013

Back to top