Query 027604
Match_columns 221
No_of_seqs 41 out of 43
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 12:25:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027604.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027604hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13471 Transglut_core3: Tran 22.0 33 0.00072 26.4 0.3 32 62-96 84-115 (117)
2 PF05278 PEARLI-4: Arabidopsis 21.0 82 0.0018 29.3 2.6 38 88-130 20-57 (269)
3 PF10461 Peptidase_S68: Peptid 17.4 49 0.0011 22.4 0.3 12 193-204 19-30 (35)
4 PF09316 Cmyb_C: C-myb, C-term 16.3 67 0.0014 28.0 0.9 22 125-146 90-112 (167)
5 PF14009 DUF4228: Domain of un 15.5 64 0.0014 25.3 0.5 9 1-9 1-9 (181)
6 PF05950 Orthopox_A36R: Orthop 12.9 51 0.0011 28.4 -0.7 14 74-87 61-74 (158)
7 KOG2251 Homeobox transcription 12.8 2.1E+02 0.0045 26.3 3.0 56 80-142 6-63 (228)
8 KOG0706 Predicted GTPase-activ 10.7 68 0.0015 32.0 -0.8 21 62-82 86-107 (454)
9 PF04736 Eclosion: Eclosion ho 9.4 1.1E+02 0.0023 23.1 0.1 15 70-84 42-56 (62)
10 PF08895 DUF1840: Domain of un 8.2 2.6E+02 0.0057 22.3 1.8 15 131-145 89-103 (105)
No 1
>PF13471 Transglut_core3: Transglutaminase-like superfamily
Probab=22.02 E-value=33 Score=26.36 Aligned_cols=32 Identities=22% Similarity=0.558 Sum_probs=21.2
Q ss_pred cccccccccccccCCCcccccccCCCCCCCCCCCc
Q 027604 62 TEEAFLDSHPWLDSDCEDYFSVNGDLTPSHGSTPV 96 (221)
Q Consensus 62 ~ee~ffds~~wl~SDceDf~SV~gD~tp~~g~TP~ 96 (221)
+++.=|.+|+|++ |+|- -|+|+.-...++||+
T Consensus 84 ~~~~~~~aHAWve--~~g~-~v~~~~~~~~~f~~i 115 (117)
T PF13471_consen 84 KDDDPFAAHAWVE--CGGR-VVTGGPENVRRFTPI 115 (117)
T ss_pred eCCCCceEEEEEE--ECCE-EEcCCCCCccCeeec
Confidence 3333688999999 4432 266666677777776
No 2
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=20.99 E-value=82 Score=29.35 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=22.7
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCChh
Q 027604 88 TPSHGSTPVHEKSFIEDPAPQPQLDKIPHTDSVPDSISKPSPT 130 (221)
Q Consensus 88 tp~~g~TP~hq~~~~~tp~~~pq~~~~~~~~~~~~s~~epSPt 130 (221)
.++|..||+|+.. ++|.++--.++. ...+..+++.||.
T Consensus 20 ~~s~~~~~~~~~~--~~~~~~~~~~~~---~~e~~~l~~~s~s 57 (269)
T PF05278_consen 20 PVSRSITPVHEKY--RIPSVEDYEQEN---NLEPPELPDESQS 57 (269)
T ss_pred CCCCccccccccc--cCccccchhhhc---ccCCCCCCCcCcc
Confidence 4678899999988 676442111111 1234567777776
No 3
>PF10461 Peptidase_S68: Peptidase S68; InterPro: IPR019502 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry contains serine peptidases belonging to MEROPS peptidase family S68 (PIDD auto-processing protein, clan S-). These proteins are known as Pidd (short for p53-induced protein with a death domain) proteins. Pidd forms a complex with Raidd and procaspase-2 that is known as the 'Piddosome'. The Piddosome forms when DNA damage occurs and either activates NF-kappaB, leading to cell survival, or caspase-2, which leads to apoptosis.
Probab=17.42 E-value=49 Score=22.41 Aligned_cols=12 Identities=33% Similarity=0.587 Sum_probs=10.8
Q ss_pred CCcccCcccccc
Q 027604 193 AQCCIPSFMRSR 204 (221)
Q Consensus 193 ~~cClP~~v~~~ 204 (221)
++|++|.|.|.+
T Consensus 19 A~C~V~hFSWFl 30 (35)
T PF10461_consen 19 ACCSVPHFSWFL 30 (35)
T ss_pred EEecccccEEEE
Confidence 799999999976
No 4
>PF09316 Cmyb_C: C-myb, C-terminal; InterPro: IPR015395 This entry represents the C-terminal domain of the proto-oncogene c-myb and the viral transforming protein myb. Truncation of the domain results in 'activation' of c-myb and subsequent tumourigenesis [].
Probab=16.33 E-value=67 Score=28.02 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=16.0
Q ss_pred CCCChh-HHHHHHHHhcCCCCCC
Q 027604 125 SKPSPT-LFELFRESFGDNPANG 146 (221)
Q Consensus 125 ~epSPt-L~ELfrEs~~~d~~~~ 146 (221)
..++|+ |.|=++|.|..+.+++
T Consensus 90 lp~tPs~L~EDi~EvikqE~~~~ 112 (167)
T PF09316_consen 90 LPQTPSHLEEDIREVIKQEQGEE 112 (167)
T ss_pred CCCchHHHHHHHHHHHHhccccc
Confidence 445554 8899999999887643
No 5
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=15.50 E-value=64 Score=25.29 Aligned_cols=9 Identities=67% Similarity=1.054 Sum_probs=7.8
Q ss_pred CCCcccccc
Q 027604 1 MGNCVSSHK 9 (221)
Q Consensus 1 MG~CaSvhk 9 (221)
||||.+...
T Consensus 1 MGn~~~~~~ 9 (181)
T PF14009_consen 1 MGNCVSCCL 9 (181)
T ss_pred CCCcccccc
Confidence 999999865
No 6
>PF05950 Orthopox_A36R: Orthopoxvirus A36R protein; InterPro: IPR010274 This family consists of several Orthopoxvirus A36R proteins. The A36R protein is predicted to be a type Ib membrane protein [].
Probab=12.91 E-value=51 Score=28.40 Aligned_cols=14 Identities=36% Similarity=0.266 Sum_probs=11.2
Q ss_pred cCCCcccccccCCC
Q 027604 74 DSDCEDYFSVNGDL 87 (221)
Q Consensus 74 ~SDceDf~SV~gD~ 87 (221)
||||||.||--+|-
T Consensus 61 esd~~d~~sa~~~~ 74 (158)
T PF05950_consen 61 ESDWEDHCSAMEQN 74 (158)
T ss_pred cchHHHHHHHHHhc
Confidence 79999999875554
No 7
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=12.82 E-value=2.1e+02 Score=26.34 Aligned_cols=56 Identities=18% Similarity=0.114 Sum_probs=35.0
Q ss_pred cccccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCChh--HHHHHHHHhcCC
Q 027604 80 YFSVNGDLTPSHGSTPVHEKSFIEDPAPQPQLDKIPHTDSVPDSISKPSPT--LFELFRESFGDN 142 (221)
Q Consensus 80 f~SV~gD~tp~~g~TP~hq~~~~~tp~~~pq~~~~~~~~~~~~s~~epSPt--L~ELfrEs~~~d 142 (221)
.|+|+++.+-....+..|.... -| +....-..+..+...-..+. |.+||.|.|--|
T Consensus 6 ~~~~~~~~fa~p~~d~~h~~~~--vP-----~~~~pRkqRRERTtFtr~QlevLe~LF~kTqYPD 63 (228)
T KOG2251|consen 6 PYAVNGLAFAAPYMDLLHPKPG--VP-----YSSGPRKQRRERTTFTRKQLEVLEALFAKTQYPD 63 (228)
T ss_pred CCCcCccccccccccccccCCC--CC-----cCccchhcccccceecHHHHHHHHHHHHhhcCcc
Confidence 5788888887777777775442 22 22223333444455555555 999999988766
No 8
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=10.67 E-value=68 Score=31.99 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=16.7
Q ss_pred cccccccccccccCCCc-cccc
Q 027604 62 TEEAFLDSHPWLDSDCE-DYFS 82 (221)
Q Consensus 62 ~ee~ffds~~wl~SDce-Df~S 82 (221)
+--.||.-+-|-.-||+ =|+|
T Consensus 86 nA~~FFkqhg~~t~d~~aKY~S 107 (454)
T KOG0706|consen 86 NARVFFKQHGCVTLDANAKYNS 107 (454)
T ss_pred hHHHHHHHcCCcchhhhhhhcc
Confidence 44568888888888888 7776
No 9
>PF04736 Eclosion: Eclosion hormone; InterPro: IPR006825 Eclosion hormone is an insect neuropeptide that triggers the performance of ecdysis behaviour, which causes shedding of the old cuticle at the end of a molt [, ].; GO: 0008255 ecdysis-triggering hormone activity, 0007218 neuropeptide signaling pathway, 0018990 ecdysis, chitin-based cuticle
Probab=9.41 E-value=1.1e+02 Score=23.09 Aligned_cols=15 Identities=40% Similarity=0.454 Sum_probs=11.3
Q ss_pred cccccCCCccccccc
Q 027604 70 HPWLDSDCEDYFSVN 84 (221)
Q Consensus 70 ~~wl~SDceDf~SV~ 84 (221)
..-+--||||+.|+.
T Consensus 42 kGk~iPDCed~~SI~ 56 (62)
T PF04736_consen 42 KGKLIPDCEDIDSIA 56 (62)
T ss_pred CCCcCCCccchhhHH
Confidence 345668999999874
No 10
>PF08895 DUF1840: Domain of unknown function (DUF1840); InterPro: IPR014991 This group of proteins are functionally uncharacterised.
Probab=8.19 E-value=2.6e+02 Score=22.35 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCC
Q 027604 131 LFELFRESFGDNPAN 145 (221)
Q Consensus 131 L~ELfrEs~~~d~~~ 145 (221)
|+||||.++.++.++
T Consensus 89 Li~mL~~A~~~~~~V 103 (105)
T PF08895_consen 89 LIEMLRAAAKAGCDV 103 (105)
T ss_pred HHHHHHHHHHcCCCC
Done!