Query 027604
Match_columns 221
No_of_seqs 41 out of 43
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 21:09:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4day_C Fanconi anemia group M 9.6 68 0.0023 21.0 0.1 12 76-87 8-20 (37)
2 4fgq_A Periplasmic protein; DU 7.9 59 0.002 27.5 -0.9 7 74-80 83-89 (193)
3 1xoy_A Hypothetical protein AT 7.0 1.4E+02 0.0049 24.0 1.0 13 67-79 46-58 (161)
4 1fwo_A Oryzain beta chain; bet 5.2 2.4E+02 0.0083 17.9 1.1 14 74-87 1-14 (35)
5 2lv4_A Putative outer membrane 4.8 6.4E+02 0.022 20.6 3.6 13 85-97 17-29 (146)
6 3u7d_B Protein HEG homolog 1; 4.1 3E+02 0.01 16.6 0.9 15 49-63 8-22 (26)
7 1lmr_A Toxin ADO1; ICK; NMR {A 4.0 2.6E+02 0.0091 17.9 0.6 15 193-209 17-31 (35)
8 1wwy_A Thioredoxin-like protei 3.9 3E+02 0.01 22.4 1.1 11 69-79 39-49 (171)
9 2olm_A Nucleoporin-like protei 3.9 1.8E+02 0.0062 23.0 -0.3 11 3-13 50-60 (140)
10 2owa_A Arfgap-like finger doma 3.7 1.6E+02 0.0056 23.3 -0.8 12 3-14 61-72 (138)
No 1
>4day_C Fanconi anemia group M protein; OB fold, protein binding-hydrolase complex; 3.30A {Homo sapiens}
Probab=9.59 E-value=68 Score=21.02 Aligned_cols=12 Identities=67% Similarity=1.046 Sum_probs=10.5
Q ss_pred CCc-ccccccCCC
Q 027604 76 DCE-DYFSVNGDL 87 (221)
Q Consensus 76 Dce-Df~SV~gD~ 87 (221)
||- |.||||=|.
T Consensus 8 D~S~~LFSVnFDL 20 (37)
T 4day_C 8 DCSRDLFSVTFDL 20 (37)
T ss_pred ccccceEEEEecc
Confidence 788 999999886
No 2
>4fgq_A Periplasmic protein; DUF920, protease, calcium binding, hydrolase; 1.65A {Legionella pneumophila subsp} PDB: 4fgo_A 4fgp_A
Probab=7.88 E-value=59 Score=27.54 Aligned_cols=7 Identities=57% Similarity=1.431 Sum_probs=5.7
Q ss_pred cCCCccc
Q 027604 74 DSDCEDY 80 (221)
Q Consensus 74 ~SDceDf 80 (221)
--|||||
T Consensus 83 ~GDCEDy 89 (193)
T 4fgq_A 83 GGDCEDF 89 (193)
T ss_dssp EECHHHH
T ss_pred CcCcHHH
Confidence 3799998
No 3
>1xoy_A Hypothetical protein AT3G04780.1; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: b.18.1.26
Probab=7.03 E-value=1.4e+02 Score=24.05 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=10.5
Q ss_pred ccccccccCCCcc
Q 027604 67 LDSHPWLDSDCED 79 (221)
Q Consensus 67 fds~~wl~SDceD 79 (221)
.+...|++||||+
T Consensus 46 ~~~~~~leSD~De 58 (161)
T 1xoy_A 46 EDEGLNLESDADE 58 (161)
T ss_dssp CTTTCCEECSSCS
T ss_pred ccCCccCcCCCCc
Confidence 4567899999994
No 4
>1fwo_A Oryzain beta chain; beta-hairpin stack fold, granulin/epithelin-like protein repeats, hydrolase; NMR {Synthetic} SCOP: g.3.16.1
Probab=5.22 E-value=2.4e+02 Score=17.90 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=9.1
Q ss_pred cCCCcccccccCCC
Q 027604 74 DSDCEDYFSVNGDL 87 (221)
Q Consensus 74 ~SDceDf~SV~gD~ 87 (221)
++.||||||-...-
T Consensus 1 ~~~CD~~~sCP~~~ 14 (35)
T 1fwo_A 1 DHVCDDNFSCPAGS 14 (35)
T ss_dssp CCCSSSSCCCCSSS
T ss_pred CccCCCcccCCCCC
Confidence 35678888766544
No 5
>2lv4_A Putative outer membrane or exported protein; antivirulence, adhesion, protein binding; NMR {Salmonella enterica subsp}
Probab=4.78 E-value=6.4e+02 Score=20.60 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCcc
Q 027604 85 GDLTPSHGSTPVH 97 (221)
Q Consensus 85 gD~tp~~g~TP~h 97 (221)
-|..++.|.||+-
T Consensus 17 TDmaSAsGYtPvP 29 (146)
T 2lv4_A 17 TDMASASGYTPVP 29 (146)
T ss_dssp CCCCCCCCCCCCC
T ss_pred ccccccCCCccCC
Confidence 4788999999983
No 6
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=4.15 E-value=3e+02 Score=16.59 Aligned_cols=15 Identities=13% Similarity=-0.048 Sum_probs=9.2
Q ss_pred CCCCCCccCCCCccc
Q 027604 49 AMGQADSFRDLSNTE 63 (221)
Q Consensus 49 ~~~~~~~f~d~~s~e 63 (221)
|+.+||+|-.-.|+.
T Consensus 8 pgqynpsfisddsrr 22 (26)
T 3u7d_B 8 PGQYNPSFISDESRR 22 (26)
T ss_pred cCccCcccccCcchh
Confidence 556889985434443
No 7
>1lmr_A Toxin ADO1; ICK; NMR {Agriosphodrus dohrni} SCOP: g.3.6.3
Probab=3.95 E-value=2.6e+02 Score=17.94 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=10.6
Q ss_pred CCcccCccccccchhhh
Q 027604 193 AQCCIPSFMRSRSFSER 209 (221)
Q Consensus 193 ~~cClP~~v~~~Sf~eR 209 (221)
.+||-| .+|.++-.|
T Consensus 17 K~CC~~--t~C~~YANr 31 (35)
T 1lmr_A 17 KQCCKG--TTCMFYANR 31 (35)
T ss_dssp CCCCTT--EEEETTTTE
T ss_pred CCccCc--hhHHHhhhh
Confidence 589998 777766543
No 8
>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical protein, regulatory protei apoptosis, cancer; NMR {Homo sapiens}
Probab=3.94 E-value=3e+02 Score=22.41 Aligned_cols=11 Identities=36% Similarity=1.041 Sum_probs=9.2
Q ss_pred ccccccCCCcc
Q 027604 69 SHPWLDSDCED 79 (221)
Q Consensus 69 s~~wl~SDceD 79 (221)
...|++||||+
T Consensus 39 ~~~~leSD~De 49 (171)
T 1wwy_A 39 DTTFLESDCDE 49 (171)
T ss_dssp SSCCBCCSSCS
T ss_pred CCCcCcCCCCc
Confidence 56799999994
No 9
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=3.94 E-value=1.8e+02 Score=22.99 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=9.2
Q ss_pred CccccccCCCC
Q 027604 3 NCVSSHKSTDM 13 (221)
Q Consensus 3 ~CaSvhk~~~m 13 (221)
.|++||++.|.
T Consensus 50 ~CsgiHR~LG~ 60 (140)
T 2olm_A 50 SCSGSLRGLNP 60 (140)
T ss_dssp HHHHHHTTSSS
T ss_pred hccchhccCCC
Confidence 49999999875
No 10
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=3.65 E-value=1.6e+02 Score=23.32 Aligned_cols=12 Identities=33% Similarity=0.764 Sum_probs=9.6
Q ss_pred CccccccCCCCc
Q 027604 3 NCVSSHKSTDMK 14 (221)
Q Consensus 3 ~CaSvhk~~~mk 14 (221)
.|++||++.|..
T Consensus 61 ~CsgiHR~LG~h 72 (138)
T 2owa_A 61 NCSSDHRKMGVH 72 (138)
T ss_dssp HHHHHHHTTCTT
T ss_pred hhhHHHhCCCCC
Confidence 499999998754
Done!