Query 027604
Match_columns 221
No_of_seqs 41 out of 43
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 21:09:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027604.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027604hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g40a1 g.18.1.1 (A:1-64) Comp 18.8 15 0.0011 24.5 0.6 17 194-218 33-49 (64)
2 d1sg1x4 g.24.1.1 (X:138-161) L 6.0 92 0.0067 17.3 1.0 13 66-78 12-24 (26)
3 d1xoya_ b.18.1.26 (A:) Hypothe 5.9 76 0.0055 23.8 0.8 13 67-79 46-58 (161)
4 d1t4wa_ b.2.5.2 (A:) Transcrip 5.2 81 0.0059 24.7 0.5 16 201-216 141-156 (196)
5 d1kqha_ g.3.6.2 (A:) ACTX-HI:O 4.9 1.3E+02 0.0096 17.9 1.2 18 189-206 11-28 (38)
6 d1dmta_ d.92.1.4 (A:) Neutral 4.1 86 0.0062 26.0 -0.2 6 77-82 26-31 (696)
7 d1efub4 d.43.1.1 (B:55-139) El 4.0 38 0.0028 23.0 -2.1 18 71-88 17-35 (85)
8 d1v59a3 d.87.1.1 (A:356-478) D 3.5 91 0.0066 21.4 -0.5 14 127-140 101-114 (123)
9 d1fwoa_ g.3.16.1 (A:) Oryzain 3.2 2.1E+02 0.015 16.9 1.1 14 75-88 2-15 (35)
10 d1k1aa_ d.211.1.1 (A:) bcl-3 { 3.0 1.1E+02 0.008 19.8 -0.5 7 91-97 2-8 (228)
No 1
>d1g40a1 g.18.1.1 (A:1-64) Complement control protein {Vaccinia virus [TaxId: 10245]}
Probab=18.82 E-value=15 Score=24.53 Aligned_cols=17 Identities=24% Similarity=0.751 Sum_probs=14.0
Q ss_pred CcccCccccccchhhhhcccCcccc
Q 027604 194 QCCIPSFMRSRSFSERKKRLSSANT 218 (221)
Q Consensus 194 ~cClP~~v~~~Sf~eRrkk~s~a~~ 218 (221)
--|||.. |||||.|-||
T Consensus 33 ylclpgy--------rkqkmgpiya 49 (64)
T d1g40a1 33 YLCLPGY--------RKQKMGPIYA 49 (64)
T ss_dssp EECCTTC--------EECSSCCSCE
T ss_pred eeeccch--------hhhccCCeee
Confidence 3688876 8999999876
No 2
>d1sg1x4 g.24.1.1 (X:138-161) Low affinity neurotrophin receptor p75NTR {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.01 E-value=92 Score=17.34 Aligned_cols=13 Identities=38% Similarity=1.191 Sum_probs=10.4
Q ss_pred cccccccccCCCc
Q 027604 66 FLDSHPWLDSDCE 78 (221)
Q Consensus 66 ffds~~wl~SDce 78 (221)
.-++.||-|..||
T Consensus 12 lrectpwadaece 24 (26)
T d1sg1x4 12 LRECTPWADAECE 24 (26)
T ss_dssp SBCCBTTBCCBCC
T ss_pred HHhCCCccccccc
Confidence 4578899998886
No 3
>d1xoya_ b.18.1.26 (A:) Hypothetical protein AT3g04780/F7O18_27 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=5.94 E-value=76 Score=23.79 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=10.6
Q ss_pred ccccccccCCCcc
Q 027604 67 LDSHPWLDSDCED 79 (221)
Q Consensus 67 fds~~wl~SDceD 79 (221)
.|...||+||||+
T Consensus 46 ~~~~~~l~SD~D~ 58 (161)
T d1xoya_ 46 EDEGLNLESDADE 58 (161)
T ss_dssp CTTTCCEECSSCS
T ss_pred cCCCceEecCCCh
Confidence 3568899999994
No 4
>d1t4wa_ b.2.5.2 (A:) Transcription factor CEP-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=5.18 E-value=81 Score=24.66 Aligned_cols=16 Identities=19% Similarity=0.374 Sum_probs=12.5
Q ss_pred ccccchhhhhcccCcc
Q 027604 201 MRSRSFSERKKRLSSA 216 (221)
Q Consensus 201 v~~~Sf~eRrkk~s~a 216 (221)
-.|+.+.||||+|--|
T Consensus 141 ~~cldl~~rrk~mcla 156 (196)
T d1t4wa_ 141 EKCLDLDDRRKTMCLA 156 (196)
T ss_dssp GGGSCHHHHTSEEEEE
T ss_pred HHhcCHHHhhhceEEE
Confidence 3678889999998544
No 5
>d1kqha_ g.3.6.2 (A:) ACTX-HI:OB4219 {Funnel-web spider (Hadronyche infensa) [TaxId: 153481]}
Probab=4.86 E-value=1.3e+02 Score=17.90 Aligned_cols=18 Identities=22% Similarity=0.528 Sum_probs=14.9
Q ss_pred cccCCCcccCccccccch
Q 027604 189 SIQSAQCCIPSFMRSRSF 206 (221)
Q Consensus 189 ~~~S~~cClP~~v~~~Sf 206 (221)
+|.-..||-|-|-+|+=|
T Consensus 11 pwsgdscckpylcsciff 28 (38)
T d1kqha_ 11 PWSGDSCCKPYLCSCIFF 28 (38)
T ss_dssp SSSSCCBCTTCEEECCSS
T ss_pred CCcCCccccceeeeEEEE
Confidence 566678999999999866
No 6
>d1dmta_ d.92.1.4 (A:) Neutral endopeptidase (neprilysin) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.08 E-value=86 Score=26.00 Aligned_cols=6 Identities=50% Similarity=1.569 Sum_probs=5.2
Q ss_pred Cccccc
Q 027604 77 CEDYFS 82 (221)
Q Consensus 77 ceDf~S 82 (221)
|||||.
T Consensus 26 CdDFY~ 31 (696)
T d1dmta_ 26 CTDFFK 31 (696)
T ss_dssp TTCHHH
T ss_pred chhHHH
Confidence 999995
No 7
>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]}
Probab=3.99 E-value=38 Score=22.96 Aligned_cols=18 Identities=17% Similarity=0.571 Sum_probs=14.7
Q ss_pred ccccCCCc-ccccccCCCC
Q 027604 71 PWLDSDCE-DYFSVNGDLT 88 (221)
Q Consensus 71 ~wl~SDce-Df~SV~gD~t 88 (221)
+.+|=-|| ||-+-|.+|.
T Consensus 17 ~ivEvncETDFVAkne~F~ 35 (85)
T d1efub4 17 IILEVNCQTDFVAKDAGFQ 35 (85)
T ss_dssp EEEEEEESCHHHHTCHHHH
T ss_pred EEEEEeccCcchhcchHHH
Confidence 56777899 9999888886
No 8
>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.45 E-value=91 Score=21.43 Aligned_cols=14 Identities=43% Similarity=0.515 Sum_probs=9.3
Q ss_pred CChhHHHHHHHHhc
Q 027604 127 PSPTLFELFRESFG 140 (221)
Q Consensus 127 pSPtL~ELfrEs~~ 140 (221)
+=|||.|.|+|+..
T Consensus 101 ~hPT~sE~~~~Aa~ 114 (123)
T d1v59a3 101 AHPTLSEAFKEANM 114 (123)
T ss_dssp CTTCTTHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 44677777777654
No 9
>d1fwoa_ g.3.16.1 (A:) Oryzain beta chain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=3.19 E-value=2.1e+02 Score=16.90 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=8.9
Q ss_pred CCCcccccccCCCC
Q 027604 75 SDCEDYFSVNGDLT 88 (221)
Q Consensus 75 SDceDf~SV~gD~t 88 (221)
+=||||||-..+-|
T Consensus 2 ~vCD~~~sCp~~~T 15 (35)
T d1fwoa_ 2 HVCDDNFSCPAGST 15 (35)
T ss_dssp CCSSSSCCCCSSSE
T ss_pred ccccCcccCCCCCc
Confidence 34788887765543
No 10
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.96 E-value=1.1e+02 Score=19.75 Aligned_cols=7 Identities=57% Similarity=1.208 Sum_probs=0.0
Q ss_pred CCCCCcc
Q 027604 91 HGSTPVH 97 (221)
Q Consensus 91 ~g~TP~h 97 (221)
+|.||.|
T Consensus 2 dG~TpLh 8 (228)
T d1k1aa_ 2 DGDTPLH 8 (228)
T ss_dssp TTCCHHH
T ss_pred CCccHHH
Done!