BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027605
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana
GN=NFYB3 PE=2 SV=1
Length = 161
Score = 201 bits (511), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 96/116 (82%), Positives = 103/116 (88%), Gaps = 1/116 (0%)
Query: 12 GSPTSGNISDKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEAS 71
G GN S +EQDRFLPIANVSRIMKK+LPANAKISK+AKETVQECVSEFISFITGEAS
Sbjct: 10 GHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEAS 69
Query: 72 DKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGEKNSMA-RQEDQ 126
DKCQREKRKTINGDDLLWAMTTLGFE+YV PLK+YL KYRE EGEK + A RQ D+
Sbjct: 70 DKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGDK 125
>sp|Q9FGJ3|NFYB2_ARATH Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana
GN=NFYB2 PE=2 SV=1
Length = 190
Score = 189 bits (479), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 84/104 (80%), Positives = 97/104 (93%)
Query: 19 ISDKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREK 78
+S +EQDRFLPIANVSRIMKK+LPANAKISK+AKET+QECVSEFISF+TGEASDKCQ+EK
Sbjct: 23 LSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEK 82
Query: 79 RKTINGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGEKNSMAR 122
RKTINGDDLLWAMTTLGFE+YV PLK+YL ++RE EGE+ + R
Sbjct: 83 RKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGR 126
>sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana
GN=NFYB7 PE=2 SV=1
Length = 215
Score = 183 bits (464), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 88/115 (76%), Positives = 102/115 (88%), Gaps = 5/115 (4%)
Query: 7 QTSPIGSPTSGNISD----KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEF 62
+T+P GSP+S ++ KEQDRFLPIANV RIMKK LP N KISK+AKETVQECVSEF
Sbjct: 17 ETNP-GSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEF 75
Query: 63 ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGEK 117
ISF+TGEASDKCQREKRKTINGDD++WA+TTLGFE+YV+PLK+YL KYR+TEGEK
Sbjct: 76 ISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEK 130
>sp|P25209|NFYB_MAIZE Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2
SV=1
Length = 179
Score = 183 bits (464), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 81/104 (77%), Positives = 92/104 (88%)
Query: 22 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKT 81
+EQDRFLPIAN+SRIMKK++PAN KI+K+AKETVQECVSEFISFIT EASDKCQREKRKT
Sbjct: 30 REQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 89
Query: 82 INGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGEKNSMARQED 125
INGDDLLWAM TLGFE+Y+ PLK+YL KYRE EG+ A+ D
Sbjct: 90 INGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKSSD 133
>sp|Q60EQ4|NFYB3_ORYSJ Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp.
japonica GN=NFYB3 PE=1 SV=2
Length = 185
Score = 181 bits (458), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 81/104 (77%), Positives = 92/104 (88%)
Query: 22 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKT 81
+EQDRFLPIAN+SRIMKK++PAN KI+K+AKETVQECVSEFISFIT EASDKCQREKRKT
Sbjct: 37 REQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 96
Query: 82 INGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGEKNSMARQED 125
INGDDLLWAM TLGFE+Y+ PLK+YL KYRE EG+ A+ D
Sbjct: 97 INGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKAGD 140
>sp|Q67XJ2|NFYBA_ARATH Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana
GN=NFYB10 PE=2 SV=1
Length = 176
Score = 176 bits (447), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 79/104 (75%), Positives = 92/104 (88%), Gaps = 2/104 (1%)
Query: 13 SPTSGNISDKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASD 72
SP S N+ +EQDRFLPIAN+SRIMK+ LP N KI+K+AKET+QECVSEFISF+T EASD
Sbjct: 21 SPRSLNV--REQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASD 78
Query: 73 KCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGE 116
KCQREKRKTINGDDLLWAM TLGFE+Y+ PLK+YL +YRE EG+
Sbjct: 79 KCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGD 122
>sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana
GN=NFYB8 PE=2 SV=1
Length = 173
Score = 176 bits (447), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 95/113 (84%), Gaps = 2/113 (1%)
Query: 13 SPTSGNISDKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASD 72
SP S ++ +EQDRFLPIAN+SRIMK+ LPAN KI+K+AKE VQECVSEFISF+T EASD
Sbjct: 22 SPRSLHV--REQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASD 79
Query: 73 KCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGEKNSMARQED 125
KCQREKRKTINGDDLLWAM TLGFE+Y+ PLK+YL +YRE EG+ A+ D
Sbjct: 80 KCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGSAKGGD 132
>sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana
GN=NFYB1 PE=1 SV=2
Length = 141
Score = 174 bits (440), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 80/118 (67%), Positives = 94/118 (79%)
Query: 8 TSPIGSPTSGNISDKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFIT 67
+SP G S +EQDR+LPIAN+SRIMKK+LP N KI K+AK+TVQECVSEFISFIT
Sbjct: 6 SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65
Query: 68 GEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGEKNSMARQED 125
EASDKCQ+EKRKT+NGDDLLWAM TLGFE+Y+ PLKIYL +YRE EG+ + D
Sbjct: 66 SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGD 123
>sp|Q5QMG3|NFYB2_ORYSJ Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp.
japonica GN=NFYB2 PE=2 SV=1
Length = 178
Score = 171 bits (434), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 78/103 (75%), Positives = 92/103 (89%), Gaps = 2/103 (1%)
Query: 14 PTSGNISDKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDK 73
P SG + +EQDRFLPIAN+SRIMKK++PAN KI+K+AKET+QECVSEFISF+T EASDK
Sbjct: 27 PRSGGV--REQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDK 84
Query: 74 CQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGE 116
CQ+EKRKTING+DLL+AM TLGFE YV PLKIYL+KYRE G+
Sbjct: 85 CQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREVIGD 127
>sp|Q54WV0|NFYB_DICDI Nuclear transcription factor Y subunit beta OS=Dictyostelium
discoideum GN=nfyB PE=3 SV=1
Length = 490
Score = 166 bits (420), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 74/98 (75%), Positives = 88/98 (89%)
Query: 21 DKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRK 80
D+EQDR+LPIAN+ RIMKK+LP NAK++K+AKETVQ+CVSEFISFIT EASDKCQ+EKRK
Sbjct: 46 DREQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRK 105
Query: 81 TINGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGEKN 118
TING+D++ AM +LGFENYV PLK+YL KYRETE N
Sbjct: 106 TINGEDIIAAMVSLGFENYVEPLKVYLLKYRETEKNSN 143
>sp|Q65XK1|NFYB4_ORYSJ Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp.
japonica GN=NFYB4 PE=2 SV=2
Length = 143
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 74/116 (63%), Positives = 94/116 (81%), Gaps = 5/116 (4%)
Query: 22 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKT 81
KEQDRFLPIAN+ RIM++++P N KI+K++KE+VQECVSEFISFIT EASDKC +EKRKT
Sbjct: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
Query: 82 INGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGEK-----NSMARQEDQAANPNP 132
INGDDL+W+M TLGFE+YV PLK+YL YRETEG+ + + ++D N +P
Sbjct: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGDTKGSRASELPVKKDVVLNGDP 136
>sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana
GN=NFYB5 PE=2 SV=1
Length = 160
Score = 160 bits (406), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 72/96 (75%), Positives = 83/96 (86%)
Query: 22 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKT 81
KEQDR LPIANV RIMK LPANAK+SKEAKET+QECVSEFISF+TGEASDKC +EKRKT
Sbjct: 50 KEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKT 109
Query: 82 INGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGEK 117
+NGDD+ WAM LGF++Y + LK YL++YR EGEK
Sbjct: 110 VNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEK 145
>sp|Q9SFD8|NFYB9_ARATH Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana
GN=NFYB9 PE=1 SV=2
Length = 238
Score = 156 bits (394), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 64/103 (62%), Positives = 90/103 (87%)
Query: 22 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKT 81
+EQD+++PIANV RIM+K+LP++AKIS +AKET+QECVSE+ISF+TGEA+++CQRE+RKT
Sbjct: 58 REQDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKT 117
Query: 82 INGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGEKNSMARQE 124
I +D+LWAM+ LGF+NYV PL +++N+YRE E ++ S R E
Sbjct: 118 ITAEDILWAMSKLGFDNYVDPLTVFINRYREIETDRGSALRGE 160
>sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana
GN=NFYB6 PE=1 SV=2
Length = 234
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 64/96 (66%), Positives = 87/96 (90%)
Query: 22 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKT 81
+EQDRF+PIANV RIM++ LPA+AKIS ++KET+QECVSE+ISFITGEA+++CQRE+RKT
Sbjct: 57 REQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQRKT 116
Query: 82 INGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGEK 117
I +D+LWAM+ LGF++Y+ PL +YL++YRE EGE+
Sbjct: 117 ITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152
>sp|P25210|NFYB_PETMA Nuclear transcription factor Y subunit beta OS=Petromyzon marinus
GN=NFYB PE=2 SV=1
Length = 209
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/154 (51%), Positives = 107/154 (69%), Gaps = 9/154 (5%)
Query: 22 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKT 81
+EQD +LPIANV+RIMK S+P++ KI+K+AKE VQECVSEFISFIT EAS++C +EKRKT
Sbjct: 54 REQDIYLPIANVARIMKTSIPSSGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 113
Query: 82 INGDDLLWAMTTLGFENYVSPLKIYLNKYRET-EGEKNSMARQEDQAANPNPSHAAAAEI 140
ING+D+L+AM+TLGF++YV PLK YL KYRE+ +GEK A + A E+
Sbjct: 114 INGEDILFAMSTLGFDSYVEPLKQYLQKYRESMKGEKGI------NATVVTTTDAIPEEL 167
Query: 141 NKANNS--FSSSDNKADFQNFNMGFYSLGAQVAP 172
+ + S ++S AD Q N+ Y+ Q P
Sbjct: 168 TEESFSGPLATSIITADGQQQNVMVYTTAYQQIP 201
>sp|Q6RG77|NFYB_HORSE Nuclear transcription factor Y subunit beta OS=Equus caballus
GN=NFYB PE=2 SV=1
Length = 207
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/97 (68%), Positives = 85/97 (87%), Gaps = 1/97 (1%)
Query: 22 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKT 81
+EQD +LPIANV+RIMK ++P KI+K+AKE VQECVSEFISFIT EAS++C +EKRKT
Sbjct: 53 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 112
Query: 82 INGDDLLWAMTTLGFENYVSPLKIYLNKYRET-EGEK 117
ING+D+L+AM+TLGF++YV PLK+YL K+RE +GEK
Sbjct: 113 INGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 149
>sp|P63140|NFYB_RAT Nuclear transcription factor Y subunit beta OS=Rattus norvegicus
GN=Nfyb PE=1 SV=1
Length = 207
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/97 (68%), Positives = 85/97 (87%), Gaps = 1/97 (1%)
Query: 22 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKT 81
+EQD +LPIANV+RIMK ++P KI+K+AKE VQECVSEFISFIT EAS++C +EKRKT
Sbjct: 53 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 112
Query: 82 INGDDLLWAMTTLGFENYVSPLKIYLNKYRET-EGEK 117
ING+D+L+AM+TLGF++YV PLK+YL K+RE +GEK
Sbjct: 113 INGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 149
>sp|P63139|NFYB_MOUSE Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb
PE=1 SV=1
Length = 207
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/97 (68%), Positives = 85/97 (87%), Gaps = 1/97 (1%)
Query: 22 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKT 81
+EQD +LPIANV+RIMK ++P KI+K+AKE VQECVSEFISFIT EAS++C +EKRKT
Sbjct: 53 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 112
Query: 82 INGDDLLWAMTTLGFENYVSPLKIYLNKYRET-EGEK 117
ING+D+L+AM+TLGF++YV PLK+YL K+RE +GEK
Sbjct: 113 INGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 149
>sp|Q32KW0|NFYB_BOVIN Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB
PE=2 SV=1
Length = 207
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/97 (68%), Positives = 85/97 (87%), Gaps = 1/97 (1%)
Query: 22 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKT 81
+EQD +LPIANV+RIMK ++P KI+K+AKE VQECVSEFISFIT EAS++C +EKRKT
Sbjct: 53 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 112
Query: 82 INGDDLLWAMTTLGFENYVSPLKIYLNKYRET-EGEK 117
ING+D+L+AM+TLGF++YV PLK+YL K+RE +GEK
Sbjct: 113 INGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 149
>sp|P25208|NFYB_HUMAN Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB
PE=1 SV=2
Length = 207
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/97 (68%), Positives = 85/97 (87%), Gaps = 1/97 (1%)
Query: 22 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKT 81
+EQD +LPIANV+RIMK ++P KI+K+AKE VQECVSEFISFIT EAS++C +EKRKT
Sbjct: 53 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 112
Query: 82 INGDDLLWAMTTLGFENYVSPLKIYLNKYRET-EGEK 117
ING+D+L+AM+TLGF++YV PLK+YL K+RE +GEK
Sbjct: 113 INGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 149
>sp|P25207|NFYB_CHICK Nuclear transcription factor Y subunit beta OS=Gallus gallus
GN=NFYB PE=2 SV=2
Length = 205
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/97 (68%), Positives = 85/97 (87%), Gaps = 1/97 (1%)
Query: 22 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKT 81
+EQD +LPIANV+RIMK ++P KI+K+AKE VQECVSEFISFIT EAS++C +EKRKT
Sbjct: 51 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 110
Query: 82 INGDDLLWAMTTLGFENYVSPLKIYLNKYRET-EGEK 117
ING+D+L+AM+TLGF++YV PLK+YL K+RE +GEK
Sbjct: 111 INGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEK 147
>sp|O04027|NFYB4_ARATH Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana
GN=NFYB4 PE=1 SV=1
Length = 139
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/95 (64%), Positives = 79/95 (83%)
Query: 23 EQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTI 82
++DR LPIANV R+MK+ LP+NAKISKEAK+TVQEC +EFISF+T EAS+KC RE RKT+
Sbjct: 3 DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTV 62
Query: 83 NGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGEK 117
NGDD+ WA++TLG +NY + +L+KYRE E E+
Sbjct: 63 NGDDIWWALSTLGLDNYADAVGRHLHKYREAERER 97
>sp|P13434|HAP3_YEAST Transcriptional activator HAP3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP3 PE=1 SV=1
Length = 144
Score = 141 bits (356), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 63/109 (57%), Positives = 84/109 (77%)
Query: 22 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKT 81
+EQDR+LPI NV+R+MK +LP +AK+SK+AKE +QECVSE ISF+T EASD+C +KRKT
Sbjct: 36 REQDRWLPINNVARLMKNTLPPSAKVSKDAKECMQECVSELISFVTSEASDRCAADKRKT 95
Query: 82 INGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGEKNSMARQEDQAANP 130
ING+D+L ++ LGFENY LKIYL KYR+ + KN + ++D P
Sbjct: 96 INGEDILISLHALGFENYAEVLKIYLAKYRQQQALKNQLMYEQDDEEVP 144
>sp|P36611|HAP3_SCHPO Transcriptional activator hap3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap3 PE=3 SV=1
Length = 116
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
Query: 27 FLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDD 86
LPIANV+RIMK +LP NAKISKEAK+ VQ+CVSEFISF+TGEAS++C +EKRKTI G+D
Sbjct: 11 LLPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGED 70
Query: 87 LLWAMTTLGFENYVSPLKIYLNKYRETEGEKNSMARQEDQAANPNP 132
+L A+ TLGFENY LKI L KYRE + SM ++ Q+ + P
Sbjct: 71 VLLALNTLGFENYAEVLKISLTKYREQQARSASM-KETKQSRSEEP 115
>sp|P40914|HAP3_KLULA Transcriptional activator HAP3 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=HAP3 PE=3 SV=1
Length = 205
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/98 (63%), Positives = 77/98 (78%)
Query: 23 EQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTI 82
EQDR+LPI NV+R+MK +LPA K+SK+AKE +QECVSEFISF+T EA D+C KRKTI
Sbjct: 22 EQDRWLPINNVARLMKNTLPATTKVSKDAKECMQECVSEFISFVTSEACDRCTSGKRKTI 81
Query: 83 NGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGEKNSM 120
NG+D+L ++ LGFENY LKIYL KYR+ + KN M
Sbjct: 82 NGEDILLSLHALGFENYAEVLKIYLAKYRQQQAIKNQM 119
>sp|P25211|NFYB_XENLA Nuclear transcription factor Y subunit beta (Fragment) OS=Xenopus
laevis GN=nfyb PE=2 SV=1
Length = 122
Score = 104 bits (259), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 65/95 (68%), Gaps = 8/95 (8%)
Query: 55 VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYRE-T 113
VQECVSEFISFIT EAS++C +EKRKTING+D+L+AM+TLGF++YV PLK+YL K+RE
Sbjct: 1 VQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAM 60
Query: 114 EGEK-------NSMARQEDQAANPNPSHAAAAEIN 141
+GEK ED A P S A I
Sbjct: 61 KGEKGIGGTVTTGDGLGEDLAEEPFTSQIPAGLIT 95
>sp|Q6Z348|NFYB1_ORYSJ Nuclear transcription factor Y subunit B-1 OS=Oryza sativa subsp.
japonica GN=NFYB1 PE=1 SV=2
Length = 186
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 55/87 (63%)
Query: 28 LPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDL 87
LP+AN+ R++KK LP AKI AK +C EF+ F+ EAS+K + E R+T+ +D
Sbjct: 34 LPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
Query: 88 LWAMTTLGFENYVSPLKIYLNKYRETE 114
L + LGF+ YV P+ Y++ YRE E
Sbjct: 94 LGSFGDLGFDRYVDPMDAYIHGYREFE 120
>sp|Q55DJ5|NC2B_DICDI Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1
Length = 178
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 61/95 (64%)
Query: 17 GNISDKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQR 76
G+ +DKE + LP A VS+++K+ LP + K S E ++ + EC EFI I+ EA+D C R
Sbjct: 2 GDKNDKEDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGR 61
Query: 77 EKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYR 111
E+++TI + ++ A+T LGF +Y + +K++
Sbjct: 62 EQKRTIAAEHVIKALTELGFSDYTQKVSDVYDKHK 96
>sp|Q9JKP7|DPOE3_MOUSE DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2 SV=1
Length = 145
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 62/105 (59%)
Query: 19 ISDKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREK 78
++++ +D LP A ++RI+K++LP ISKEA+ + S F+ + T A++ + K
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK 60
Query: 79 RKTINGDDLLWAMTTLGFENYVSPLKIYLNKYRETEGEKNSMARQ 123
RKT+N D+L AM + F+ +++PLK L YR E K + Q
Sbjct: 61 RKTLNASDVLSAMEEMEFQRFITPLKEALEAYRRDEKGKKEASEQ 105
>sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1
Length = 147
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 19 ISDKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREK 78
++++ +D LP A ++RI+K++LP ISKEA+ + S F+ + T A++ + K
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK 60
Query: 79 RKTINGDDLLWAMTTLGFENYVSPLKIYLNKY-RETEGEKNS 119
RKT+N D+L AM + F+ +V+PLK L Y RE +G+K +
Sbjct: 61 RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEA 102
>sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1
Length = 147
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 19 ISDKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREK 78
++++ +D LP A ++RI+K++LP ISKEA+ + S F+ + T A++ + K
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK 60
Query: 79 RKTINGDDLLWAMTTLGFENYVSPLKIYLNKY-RETEGEKNS 119
RKT+N D+L AM + F+ +V+PLK L Y RE +G+K +
Sbjct: 61 RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEA 102
>sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1
Length = 147
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 19 ISDKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREK 78
++++ +D LP A ++RI+K++LP ISKEA+ + S F+ + T A++ + K
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK 60
Query: 79 RKTINGDDLLWAMTTLGFENYVSPLKIYLNKY-RETEGEKNS 119
RKT+N D+L AM + F+ +V+PLK L Y RE +G+K +
Sbjct: 61 RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEA 102
>sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=2
SV=1
Length = 145
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 19 ISDKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREK 78
++++ +D LP A ++RI+K++LP ISKEA+ + S F+ + T A++ + K
Sbjct: 1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK 60
Query: 79 RKTINGDDLLWAMTTLGFENYVSPLKIYLNKY-RETEGEKNS 119
RKT+N D+L AM + F+ +V+PLK L Y RE +G+K +
Sbjct: 61 RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEA 102
>sp|P49592|NC2B_ARATH Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1
Length = 159
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 53/77 (68%)
Query: 24 QDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTIN 83
+D LP A +++I+K+ LP + +++++A++ + EC EFI+ ++ E++D C +E ++TI
Sbjct: 12 EDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIA 71
Query: 84 GDDLLWAMTTLGFENYV 100
+ +L A+ LGF Y+
Sbjct: 72 PEHVLKALQVLGFGEYI 88
>sp|Q5XI68|NC2B_RAT Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1
Length = 176
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 65/97 (67%), Gaps = 5/97 (5%)
Query: 15 TSGNISDKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKC 74
+SGN + D +P A +++++K++LP N +++ +A+E V C +EFI I+ EA++ C
Sbjct: 4 SSGN----DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEIC 58
Query: 75 QREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYR 111
+ ++KTI+ + ++ A+ +LGF +Y+S +K L + +
Sbjct: 59 NKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95
>sp|Q91WV0|NC2B_MOUSE Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1
Length = 176
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 65/97 (67%), Gaps = 5/97 (5%)
Query: 15 TSGNISDKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKC 74
+SGN + D +P A +++++K++LP N +++ +A+E V C +EFI I+ EA++ C
Sbjct: 4 SSGN----DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEIC 58
Query: 75 QREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYR 111
+ ++KTI+ + ++ A+ +LGF +Y+S +K L + +
Sbjct: 59 NKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95
>sp|Q01658|NC2B_HUMAN Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1
Length = 176
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 65/97 (67%), Gaps = 5/97 (5%)
Query: 15 TSGNISDKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKC 74
+SGN + D +P A +++++K++LP N +++ +A+E V C +EFI I+ EA++ C
Sbjct: 4 SSGN----DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEIC 58
Query: 75 QREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYR 111
+ ++KTI+ + ++ A+ +LGF +Y+S +K L + +
Sbjct: 59 NKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95
>sp|Q5ZMV3|NC2B_CHICK Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1
Length = 176
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 65/97 (67%), Gaps = 5/97 (5%)
Query: 15 TSGNISDKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKC 74
+SGN + D +P A +++++K++LP N +++ +A+E V C +EFI I+ EA++ C
Sbjct: 4 SSGN----DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEIC 58
Query: 75 QREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYR 111
+ ++KTI+ + ++ A+ +LGF +Y+S +K L + +
Sbjct: 59 NKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95
>sp|Q9VJQ5|NC2B_DROME Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1
Length = 183
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 28 LPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDL 87
LP A++++I+K+ +P +++ E++E + C SEFI I+ EA++ C +KTIN + +
Sbjct: 20 LPRASINKIIKELVP-TVRVANESRELILNCCSEFIHLISSEANEVCNMRNKKTINAEHV 78
Query: 88 LWAMTTLGFENYVSPLKIYLNKYRETEGEK 117
L A+ LGF +Y + L+ +E ++
Sbjct: 79 LEALERLGFHDYKQEAEAVLHDCKEVAAKR 108
>sp|O14348|NC2B_SCHPO Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ncb2 PE=3 SV=1
Length = 161
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 28 LPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDL 87
LP A V +++ LP + +KEA++ + EC EFI ++ EA++ C++E +KTI + +
Sbjct: 12 LPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTIAAEHI 71
Query: 88 LWAMTTLGFENYVS 101
+ A+ L F+ Y++
Sbjct: 72 IKALENLEFKEYIA 85
>sp|Q75JQ9|DPOE3_DICDI DNA polymerase epsilon subunit 3 OS=Dictyostelium discoideum
GN=pole3 PE=3 SV=1
Length = 138
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 28 LPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDL 87
LP A V+RI+K SLP +KE++ + + +I ++T + D R TI+ D+
Sbjct: 7 LPGAIVNRIIKASLPEGVLCAKESRLAIAKAAKVWIHYLTAASIDFSSHSGRSTISPKDV 66
Query: 88 LWAMTTLGFENYVSPLKIYL 107
A+ + FEN+ L+ YL
Sbjct: 67 FQAIEEIDFENFKPQLEEYL 86
>sp|Q6CHS6|DPB4_YARLI DNA polymerase epsilon subunit D OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB4 PE=3 SV=1
Length = 163
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 25 DRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTING 84
D P + + + K++LP +A ISK+A +Q + F+S++ + + RK I
Sbjct: 34 DLLYPKSTIKNLAKETLPDDAIISKDALTAIQRAATLFVSYMASHGNASAEAGGRKKITP 93
Query: 85 DDLLWAMTTLGFENYVSPLKIYLNKYRE--TEGEKNSMAR-QEDQ 126
D+ A+ + +V + +N++ + + +K+ + R Q+DQ
Sbjct: 94 QDVFVALKDVDLAQFVPSVTQSVNEFEQEVAQRKKDKVVRAQDDQ 138
>sp|P87174|DPB4_SCHPO DNA polymerase epsilon subunit D OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb4 PE=1 SV=1
Length = 210
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%)
Query: 25 DRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTING 84
D LP + + R++K LP + + KEA + + + F+SF+T + + RK +
Sbjct: 14 DLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGEIATNNNRKILMP 73
Query: 85 DDLLWAMTTLGFENYVSPLKIYLNKYRETEGEK 117
D+L A+ + + + LK +L Y EK
Sbjct: 74 QDVLNALDEIEYPEFSKTLKKHLEAYELALKEK 106
>sp|Q92317|NCB2_YEAST Negative cofactor 2 complex subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NCB2 PE=1
SV=1
Length = 146
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 28 LPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDL 87
LP A V +++ + L + +K+A+E + EFI ++ AS+ E +KTI + +
Sbjct: 10 LPKATVQKMISEILDQDLMFTKDAREIIINSGIEFIMILSSMASEMADNEAKKTIAPEHV 69
Query: 88 LWAMTTLGFENYVSPL-KIYLN-----KYRETEGEK 117
+ A+ L + ++ L +I LN K +ET K
Sbjct: 70 IKALEELEYNEFIPFLEEILLNFKGSQKVKETRDSK 105
>sp|O29910|HAF1_ARCFU Probable archaeal histone A1-1 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-1 PE=3 SV=1
Length = 72
Score = 37.0 bits (84), Expect = 0.095, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 28 LPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDL 87
LP+A V R+++K+ +++S++AK + + + E+ I +A++ + RKT+ DD+
Sbjct: 8 LPLAPVERLLRKA--GASRVSEDAKVELAKAIEEYAMQIGKKAAELAKHAGRKTVKVDDI 65
Query: 88 LWAMTTL 94
A+ L
Sbjct: 66 KLALREL 72
>sp|Q6BIP4|DPB4_DEBHA DNA polymerase epsilon subunit D OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB4 PE=3 SV=2
Length = 247
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 27 FLPIANVSRIMKKSLPA-------NAKISKEAKETVQECVSEFISFITGEASDKCQREKR 79
P A V ++ K + A N ++K++ +Q + F+S + +A + E R
Sbjct: 30 LFPRATVQKLAKNIMNASSDEGASNMILAKDSMIALQRSSTVFVSHLMFQARQISKDEGR 89
Query: 80 KTINGDDLLWAMTTLGFENYVSPLKIYLNKY 110
KTIN D+L A+ F ++ +K L+ +
Sbjct: 90 KTINAQDILSALEKAEFSGFIPEVKQKLSVF 120
>sp|Q04603|DPB4_YEAST DNA polymerase epsilon subunit D OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DPB4 PE=1 SV=1
Length = 196
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 14 PTSGNISDKE----QDRFLP---IANVSRIMKKSLPANAKISKEAKETVQECVSEFISFI 66
PT+ I ++E QD P I N++R + + I+K+A +Q + F++ +
Sbjct: 15 PTTSYIKEQENITIQDLLFPKSTIVNLAREVPQQSGKKLLINKDASLALQRGATVFVNHL 74
Query: 67 TGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKYR 111
A + + + +K+ + DD+L A+ +G P++ L++Y+
Sbjct: 75 LLFAREIAKSQDKKSCSVDDVLSALDHIGHSALKGPVRDKLDEYQ 119
>sp|Q06512|NOC4_YEAST Nucleolar complex protein 4 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NOC4 PE=1 SV=1
Length = 552
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 12/125 (9%)
Query: 97 ENYVSPLKIYLNKYRETEGEKNSMARQEDQAANPNPSHAAAAEINKANNSFSSSDNKADF 156
ENYV P ++ + T +S+ + +P+ A A+I A S N DF
Sbjct: 440 ENYVDPFDVHESDPELTHALDSSLWELASLMEHYHPNVATLAKIF-AQPFKKLSYNMEDF 498
Query: 157 QNFNMGFYSLGAQVAPNSNGEGTRVMGYGENLGVEAFNLSRIYDNGDGNGGNRSAMAAHV 216
++N SL N E +R + L EAF + ++DN DG+ S ++
Sbjct: 499 LDWNYD--SLL-------NAESSRKLKTLPTLEFEAF--TNVFDNEDGDSEASSQGNVYL 547
Query: 217 HGVGW 221
GV W
Sbjct: 548 PGVAW 552
>sp|O28779|HAF2_ARCFU Probable archaeal histone A1-2 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-2 PE=3 SV=1
Length = 67
Score = 34.7 bits (78), Expect = 0.57, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 28 LPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDL 87
LP+A V R+++K+ ++S +A E + E + ++ + +A + + RKT+ DD+
Sbjct: 4 LPMAPVDRLIRKA--GAERVSADAVEKMVEVLEDYAITVAKKAVEIAKHSGRKTVTADDI 61
Query: 88 LWAMT 92
A++
Sbjct: 62 KLALS 66
>sp|O60840|CAC1F_HUMAN Voltage-dependent L-type calcium channel subunit alpha-1F OS=Homo
sapiens GN=CACNA1F PE=1 SV=2
Length = 1977
Score = 34.3 bits (77), Expect = 0.62, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 48 SKEAKETVQECVSEFISFITGEASDKCQREK---RKTINGDDLLWAMTTL----GFENYV 100
+ EAK T QEC F+ + G+ S RE+ N D++L AM L FE +
Sbjct: 1030 TDEAKHTPQECKGSFLVYPDGDVSRPLVRERLWVNSDFNFDNVLSAMMALFTVSTFEGWP 1089
Query: 101 SPLKIYLNKYRETEG 115
+ L ++ Y E G
Sbjct: 1090 ALLYKAIDAYAEDHG 1104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,716,089
Number of Sequences: 539616
Number of extensions: 3514736
Number of successful extensions: 7786
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 7688
Number of HSP's gapped (non-prelim): 135
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)