Query 027605
Match_columns 221
No_of_seqs 131 out of 580
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 21:11:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027605.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027605hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jfi_B DR1 protein, transcript 100.0 1.5E-31 5.3E-36 226.5 12.5 115 13-128 1-115 (179)
2 2byk_B Chrac-14; nucleosome sl 100.0 7.3E-31 2.5E-35 211.2 10.8 108 19-126 1-108 (128)
3 1n1j_A NF-YB; histone-like PAI 100.0 1.2E-28 4.2E-33 186.7 10.6 92 21-112 2-93 (93)
4 3b0c_W CENP-W, centromere prot 99.9 6.7E-22 2.3E-26 145.4 7.4 69 25-94 2-70 (76)
5 1f1e_A Histone fold protein; a 99.8 8.4E-20 2.9E-24 151.4 8.3 75 26-101 3-77 (154)
6 1b67_A Protein (histone HMFA); 99.7 3.3E-18 1.1E-22 122.2 8.1 66 27-94 2-67 (68)
7 3b0c_T CENP-T, centromere prot 99.7 6.1E-18 2.1E-22 133.1 9.2 92 23-116 3-94 (111)
8 2byk_A Chrac-16; nucleosome sl 99.7 5.5E-18 1.9E-22 138.3 4.1 97 23-120 15-115 (140)
9 4g92_C HAPE; transcription fac 99.7 1.9E-16 6.6E-21 125.5 8.1 78 22-100 36-113 (119)
10 1f1e_A Histone fold protein; a 99.6 7.9E-16 2.7E-20 127.6 8.8 73 20-94 75-147 (154)
11 1n1j_B NF-YC; histone-like PAI 99.6 8.5E-16 2.9E-20 117.5 7.0 81 21-102 13-93 (97)
12 1id3_B Histone H4; nucleosome 99.5 9.6E-15 3.3E-19 113.3 7.9 77 21-99 22-98 (102)
13 2hue_C Histone H4; mini beta s 99.5 7.1E-15 2.4E-19 109.9 6.9 76 22-99 5-80 (84)
14 1ku5_A HPHA, archaeal histon; 99.5 7E-14 2.4E-18 100.7 7.7 64 27-92 6-69 (70)
15 1tzy_D Histone H4-VI; histone- 99.5 8.9E-14 3.1E-18 107.5 7.7 77 21-99 23-99 (103)
16 2yfw_B Histone H4, H4; cell cy 99.5 1.3E-13 4.3E-18 106.7 7.3 76 22-99 24-99 (103)
17 1jfi_A Transcription regulator 99.3 4E-12 1.4E-16 97.5 5.9 78 24-102 8-85 (98)
18 2hue_B Histone H3; mini beta s 98.8 2.8E-08 9.7E-13 74.1 8.5 71 25-95 1-74 (77)
19 3vh5_A CENP-S; histone fold, c 98.7 1.8E-08 6.1E-13 82.7 6.3 77 32-114 24-101 (140)
20 1taf_B TFIID TBP associated fa 98.6 1.2E-07 4.1E-12 69.5 8.3 65 26-92 5-69 (70)
21 4dra_A Centromere protein S; D 98.6 1E-07 3.4E-12 75.8 7.6 77 32-114 32-109 (113)
22 3nqj_A Histone H3-like centrom 98.6 8.8E-08 3E-12 72.2 6.7 67 26-92 2-73 (82)
23 2yfv_A Histone H3-like centrom 98.6 8.2E-08 2.8E-12 74.7 6.5 70 22-91 22-97 (100)
24 3v9r_A MHF1, uncharacterized p 98.5 2.6E-07 8.7E-12 70.7 7.5 63 32-94 17-80 (90)
25 3b0b_B CENP-S, centromere prot 98.5 4.3E-07 1.5E-11 71.3 8.2 77 32-114 24-101 (107)
26 3r45_A Histone H3-like centrom 98.5 1.7E-07 5.9E-12 78.1 6.2 71 22-92 72-147 (156)
27 3nqu_A Histone H3-like centrom 98.5 1.9E-07 6.6E-12 76.6 6.1 74 22-95 56-134 (140)
28 1tzy_C Histone H3; histone-fol 98.4 4.9E-07 1.7E-11 73.7 7.7 73 22-94 57-132 (136)
29 1f66_C Histone H2A.Z; nucleoso 98.4 6.7E-07 2.3E-11 71.9 6.5 70 24-93 24-93 (128)
30 1taf_A TFIID TBP associated fa 98.2 5.5E-06 1.9E-10 60.3 7.9 61 31-93 5-65 (68)
31 2nqb_C Histone H2A; nucleosome 98.2 4.4E-06 1.5E-10 66.7 7.9 69 24-93 20-88 (123)
32 1tzy_A Histone H2A-IV; histone 98.2 5.6E-06 1.9E-10 66.6 7.9 68 24-92 22-89 (129)
33 1id3_C Histone H2A.1; nucleoso 98.1 5.1E-06 1.8E-10 67.0 7.3 70 23-93 21-90 (131)
34 2f8n_G Core histone macro-H2A. 98.1 7.2E-06 2.5E-10 65.2 7.7 68 24-92 19-86 (120)
35 2ly8_A Budding yeast chaperone 98.1 4.5E-06 1.6E-10 66.9 6.1 53 46-98 64-116 (121)
36 2f8n_K Histone H2A type 1; nuc 98.1 9.4E-06 3.2E-10 67.0 7.7 69 24-93 41-109 (149)
37 2nqb_D Histone H2B; nucleosome 98.1 9.6E-06 3.3E-10 65.3 7.2 63 31-94 37-99 (123)
38 1tzy_B Histone H2B; histone-fo 98.0 1.2E-05 4.2E-10 64.9 7.2 63 31-94 40-102 (126)
39 4dra_E Centromere protein X; D 98.0 2.9E-05 9.8E-10 58.8 8.6 75 19-93 4-79 (84)
40 2jss_A Chimera of histone H2B. 97.9 2.5E-05 8.4E-10 66.0 7.7 69 24-92 102-170 (192)
41 3b0b_C CENP-X, centromere prot 97.9 5.8E-05 2E-09 56.6 8.1 70 23-92 4-74 (81)
42 2l5a_A Histone H3-like centrom 97.8 1.7E-05 5.8E-10 69.8 4.8 59 35-95 169-227 (235)
43 2jss_A Chimera of histone H2B. 97.8 6.4E-05 2.2E-09 63.5 7.8 63 31-94 7-69 (192)
44 1h3o_B Transcription initiatio 97.5 0.00039 1.3E-08 51.6 8.2 66 27-93 5-70 (76)
45 1bh9_B TAFII28; histone fold, 97.5 0.00036 1.2E-08 53.0 7.9 68 27-96 16-84 (89)
46 2l5a_A Histone H3-like centrom 97.2 0.00048 1.6E-08 60.6 6.3 71 25-95 9-85 (235)
47 3v9r_B MHF2, uncharacterized p 96.5 0.0047 1.6E-07 47.2 5.9 50 27-76 1-51 (88)
48 2ly8_A Budding yeast chaperone 94.5 0.084 2.9E-06 42.1 6.3 63 28-91 2-73 (121)
49 3uk6_A RUVB-like 2; hexameric 90.2 0.45 1.6E-05 40.5 5.8 66 28-93 259-329 (368)
50 1fnn_A CDC6P, cell division co 83.4 4.5 0.00015 34.1 8.1 77 28-104 193-284 (389)
51 2c9o_A RUVB-like 1; hexameric 80.8 2.2 7.4E-05 38.7 5.5 66 28-93 366-436 (456)
52 2v1u_A Cell division control p 80.1 3.4 0.00012 34.6 6.1 66 30-95 203-277 (387)
53 3ksy_A SOS-1, SON of sevenless 76.3 7 0.00024 39.8 8.2 67 24-92 101-167 (1049)
54 2qby_A CDC6 homolog 1, cell di 75.4 7 0.00024 32.6 6.7 71 28-98 197-276 (386)
55 3kw6_A 26S protease regulatory 71.7 3.5 0.00012 28.5 3.4 43 52-94 27-73 (78)
56 1khy_A CLPB protein; alpha hel 69.1 11 0.00038 28.2 6.0 38 46-95 5-42 (148)
57 2r44_A Uncharacterized protein 67.3 22 0.00077 29.8 8.1 51 44-94 224-297 (331)
58 3k1j_A LON protease, ATP-depen 65.9 35 0.0012 32.0 9.8 49 45-93 313-374 (604)
59 3fh2_A Probable ATP-dependent 65.8 7.4 0.00025 29.7 4.4 37 46-94 6-42 (146)
60 2y1q_A CLPC N-domain, negative 64.6 9.1 0.00031 28.8 4.7 38 46-95 5-42 (150)
61 1g8p_A Magnesium-chelatase 38 61.2 20 0.00069 29.8 6.6 51 44-94 265-322 (350)
62 2dzn_B 26S protease regulatory 61.0 7.8 0.00027 27.1 3.5 31 66-96 40-70 (82)
63 1k6k_A ATP-dependent CLP prote 60.9 7.1 0.00024 29.2 3.4 34 47-92 2-35 (143)
64 3vlf_B 26S protease regulatory 60.7 8.3 0.00028 27.6 3.6 35 63-97 40-74 (88)
65 3aji_B S6C, proteasome (prosom 60.6 7 0.00024 27.2 3.1 33 63-95 40-72 (83)
66 2qby_B CDC6 homolog 3, cell di 59.2 20 0.00067 30.2 6.2 66 28-95 197-271 (384)
67 3fes_A ATP-dependent CLP endop 58.4 17 0.00057 27.7 5.2 38 46-95 7-44 (145)
68 2krk_A 26S protease regulatory 57.2 9.4 0.00032 27.4 3.4 32 63-94 50-81 (86)
69 2chg_A Replication factor C sm 56.1 15 0.0005 27.6 4.5 63 28-92 161-224 (226)
70 1in4_A RUVB, holliday junction 55.5 33 0.0011 29.4 7.1 68 31-98 183-254 (334)
71 1yfs_A Alanyl-tRNA synthetase; 52.0 35 0.0012 32.6 7.2 48 75-122 372-426 (465)
72 3fes_A ATP-dependent CLP endop 51.0 21 0.00071 27.1 4.7 40 44-95 79-118 (145)
73 3fwb_A Cell division control p 47.7 73 0.0025 22.6 8.6 80 25-107 37-138 (161)
74 3fh2_A Probable ATP-dependent 46.8 48 0.0016 25.0 6.1 39 45-95 80-118 (146)
75 3pm8_A PFCDPK2, calcium-depend 46.5 36 0.0012 26.4 5.5 81 25-108 19-100 (197)
76 1k6k_A ATP-dependent CLP prote 45.9 46 0.0016 24.6 5.8 38 45-94 78-115 (143)
77 1njg_A DNA polymerase III subu 45.6 26 0.00089 26.3 4.4 64 28-92 185-249 (250)
78 3zri_A CLPB protein, CLPV; cha 44.5 18 0.00062 29.1 3.5 38 46-95 24-61 (171)
79 5pal_A Parvalbumin; calcium-bi 42.6 76 0.0026 21.6 6.2 71 28-109 6-88 (109)
80 1wwi_A Hypothetical protein TT 41.4 53 0.0018 26.9 5.8 58 28-87 3-60 (148)
81 3h4m_A Proteasome-activating n 40.0 26 0.00088 28.5 3.8 33 62-94 226-258 (285)
82 3bos_A Putative DNA replicatio 39.3 43 0.0015 25.6 4.9 60 31-92 177-241 (242)
83 3b9p_A CG5977-PA, isoform A; A 37.7 1.1E+02 0.0038 24.9 7.4 60 45-104 207-282 (297)
84 1uxc_A FRUR (1-57), fructose r 37.7 41 0.0014 23.0 4.0 36 26-62 10-45 (65)
85 1w5s_A Origin recognition comp 37.6 1.1E+02 0.0039 25.6 7.6 68 27-95 214-294 (412)
86 2zbk_B Type 2 DNA topoisomeras 37.1 18 0.00063 34.3 2.8 57 38-94 427-485 (530)
87 2f3n_A SH3 and multiple ankyri 35.9 22 0.00074 24.8 2.4 23 82-104 5-27 (76)
88 3vfd_A Spastin; ATPase, microt 34.5 1.7E+02 0.0057 25.3 8.4 69 29-97 283-368 (389)
89 1r4v_A Hypothetical protein AQ 34.3 52 0.0018 27.6 4.8 63 23-87 20-84 (171)
90 4ds7_A Calmodulin, CAM; protei 33.6 1.2E+02 0.004 21.0 9.7 40 71-110 90-129 (147)
91 3d8b_A Fidgetin-like protein 1 32.4 1E+02 0.0036 26.5 6.7 51 45-95 269-335 (357)
92 2y1q_A CLPC N-domain, negative 32.2 56 0.0019 24.3 4.4 38 45-94 78-115 (150)
93 3bq7_A Diacylglycerol kinase d 32.0 27 0.00093 24.6 2.4 24 81-104 9-32 (81)
94 3zri_A CLPB protein, CLPV; cha 31.5 57 0.0019 26.1 4.5 39 44-94 96-135 (171)
95 1lv7_A FTSH; alpha/beta domain 30.9 51 0.0018 26.4 4.2 34 63-96 221-254 (257)
96 4b4t_K 26S protease regulatory 30.1 30 0.001 32.0 2.9 31 63-93 383-413 (428)
97 1wlz_A DJBP, CAP-binding prote 30.0 1.3E+02 0.0044 20.3 6.0 28 70-97 29-56 (105)
98 1hqc_A RUVB; extended AAA-ATPa 30.0 59 0.002 26.7 4.5 70 28-97 168-241 (324)
99 1bu3_A Calcium-binding protein 29.8 1.3E+02 0.0045 20.3 6.7 80 27-108 6-88 (109)
100 4b4t_L 26S protease subunit RP 29.6 42 0.0014 31.1 3.8 32 63-94 391-422 (437)
101 4b4t_I 26S protease regulatory 29.5 41 0.0014 31.5 3.8 67 26-93 350-422 (437)
102 2ovk_B RLC, myosin regulatory 29.1 1.4E+02 0.0047 21.2 5.9 36 72-107 92-127 (153)
103 3pvs_A Replication-associated 29.1 70 0.0024 29.1 5.2 67 28-95 165-245 (447)
104 1khy_A CLPB protein; alpha hel 28.8 65 0.0022 23.8 4.2 35 46-92 82-116 (148)
105 3sjs_A URE3-BP sequence specif 28.8 2.1E+02 0.0072 22.4 8.4 72 27-108 83-160 (220)
106 4b4t_H 26S protease regulatory 28.3 42 0.0014 31.7 3.6 32 63-94 419-450 (467)
107 4b4t_M 26S protease regulatory 28.0 42 0.0014 31.1 3.6 33 62-94 390-422 (434)
108 4b4t_J 26S protease regulatory 27.9 47 0.0016 30.7 3.8 32 62-93 357-388 (405)
109 2i7a_A Calpain 13; calcium-dep 27.5 2.1E+02 0.0071 22.0 9.3 38 69-107 80-121 (174)
110 3pxg_A Negative regulator of g 27.4 84 0.0029 28.4 5.4 38 46-95 5-42 (468)
111 1tiz_A Calmodulin-related prot 27.1 89 0.003 18.9 4.0 35 73-107 9-43 (67)
112 2d8c_A Phosphatidylcholine:cer 26.7 28 0.00096 26.0 1.7 23 81-103 19-41 (97)
113 1ofh_A ATP-dependent HSL prote 26.3 1E+02 0.0034 24.9 5.2 52 45-96 233-301 (310)
114 1sxj_D Activator 1 41 kDa subu 26.1 54 0.0018 27.1 3.6 68 27-95 191-264 (353)
115 1ygt_A Cytoplasmic dynein ligh 24.9 79 0.0027 23.5 4.0 22 21-42 3-24 (111)
116 3qrx_A Centrin; calcium-bindin 24.8 1.8E+02 0.0063 20.8 6.0 23 76-98 39-61 (169)
117 3mse_B Calcium-dependent prote 24.6 2.2E+02 0.0074 21.2 7.7 28 70-97 44-71 (180)
118 2qz4_A Paraplegin; AAA+, SPG7, 23.9 32 0.0011 27.3 1.7 33 62-94 217-249 (262)
119 3pfi_A Holliday junction ATP-d 23.8 1.1E+02 0.0036 25.5 5.0 69 29-97 185-257 (338)
120 2gle_A Neurabin-1; SAM domain, 23.6 30 0.001 23.6 1.3 22 82-103 7-28 (74)
121 1jr3_A DNA polymerase III subu 23.5 62 0.0021 27.0 3.5 67 27-94 177-244 (373)
122 1pva_A Parvalbumin; calcium bi 23.4 1.3E+02 0.0044 20.3 4.7 57 28-95 7-72 (110)
123 2kz2_A Calmodulin, CAM; TR2C, 22.8 1.2E+02 0.0042 20.6 4.5 36 72-107 36-71 (94)
124 3i5g_B Myosin regulatory light 22.8 2E+02 0.0068 21.4 6.0 55 41-107 4-58 (153)
125 3h4s_E KCBP interacting Ca2+-b 22.4 1.2E+02 0.0041 22.0 4.5 27 70-96 45-71 (135)
126 3bow_A Calpain-2 catalytic sub 22.2 3.5E+02 0.012 26.0 8.9 85 25-109 545-649 (714)
127 2ovk_B RLC, myosin regulatory 22.1 1.6E+02 0.0056 20.8 5.2 56 42-109 5-60 (153)
128 3qrx_A Centrin; calcium-bindin 22.0 2.2E+02 0.0075 20.3 10.2 37 72-108 108-144 (169)
129 2q2e_B Type 2 DNA topoisomeras 21.9 31 0.0011 33.6 1.5 56 38-93 435-492 (621)
130 2kfn_A Klenow fragment of DNA 21.6 2.4E+02 0.0081 26.7 7.5 48 25-75 205-252 (605)
131 1kw4_A Polyhomeotic; SAM domai 21.6 50 0.0017 24.0 2.2 24 81-104 16-40 (89)
132 2joj_A Centrin protein; N-term 21.3 1.6E+02 0.0054 18.4 4.8 23 75-97 17-39 (77)
133 3sg6_A Gcamp2, myosin light ch 21.3 2.5E+02 0.0086 26.0 7.5 41 70-110 390-430 (450)
134 2lmt_A Calmodulin-related prot 21.1 2.3E+02 0.008 20.3 5.9 41 69-109 87-127 (148)
135 1rwy_A Parvalbumin alpha; EF-h 21.0 1.5E+02 0.0051 19.9 4.6 65 28-94 6-70 (109)
136 2ktg_A Calmodulin, putative; e 20.8 1.7E+02 0.006 18.7 5.1 36 72-107 21-56 (85)
137 3f8t_A Predicted ATPase involv 20.0 2.6E+02 0.0089 26.8 7.4 66 27-92 393-481 (506)
No 1
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.97 E-value=1.5e-31 Score=226.53 Aligned_cols=115 Identities=27% Similarity=0.581 Sum_probs=97.5
Q ss_pred CCCCCCCCCCccccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHh
Q 027605 13 SPTSGNISDKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMT 92 (221)
Q Consensus 13 sp~~~~~s~~eeD~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe 92 (221)
+|+..+....++|+.||+|+|.||||++|| +++||+||+++|++||++||+|||++|+++|.+++||||+++||++||+
T Consensus 1 ~~h~~~~~~~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~ 79 (179)
T 1jfi_B 1 GPHMASSSGNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE 79 (179)
T ss_dssp -----------CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCCcccCCCchhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 356666678899999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcchHHHHHHHHHHHHHHhhhhhhhhhhhccC
Q 027605 93 TLGFENYVSPLKIYLNKYRETEGEKNSMARQEDQAA 128 (221)
Q Consensus 93 ~LGF~~yv~~Lk~~Le~yRe~~k~Kks~~k~~~~~~ 128 (221)
+|||++|+++|+.+|++||+..+.|+....+-..+.
T Consensus 80 ~LgF~~fv~~lk~~L~~yre~~~~kkr~~~K~~~sg 115 (179)
T 1jfi_B 80 SLGFGSYISEVKEVLQECKTVALKRRKASSRLENLG 115 (179)
T ss_dssp HHTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hcChHHHHHHHHHHHHHHHHHHHhCccccchhhccC
Confidence 999999999999999999999988876544444433
No 2
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.97 E-value=7.3e-31 Score=211.18 Aligned_cols=108 Identities=31% Similarity=0.519 Sum_probs=88.5
Q ss_pred CCCCccccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCCc
Q 027605 19 ISDKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEN 98 (221)
Q Consensus 19 ~s~~eeD~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~~ 98 (221)
|+.+++|+.||+|+|.||||+++|++++||+||+.+|++||++||+|||++|+++|.+++||||+++||++||+++||.+
T Consensus 1 m~e~~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~ 80 (128)
T 2byk_B 1 MVERIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFES 80 (128)
T ss_dssp ----------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTT
T ss_pred CCCccccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 027605 99 YVSPLKIYLNKYRETEGEKNSMARQEDQ 126 (221)
Q Consensus 99 yv~~Lk~~Le~yRe~~k~Kks~~k~~~~ 126 (221)
|+++|+.+|++||+.++.|+..++.+..
T Consensus 81 fl~~lk~~l~~yr~~~~~kk~~~~~~~~ 108 (128)
T 2byk_B 81 FVPSLTQDLEVYRKVVKEKKESKASKKD 108 (128)
T ss_dssp THHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 9999999999999999999987655544
No 3
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.95 E-value=1.2e-28 Score=186.74 Aligned_cols=92 Identities=68% Similarity=1.140 Sum_probs=86.0
Q ss_pred CCccccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCCcch
Q 027605 21 DKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV 100 (221)
Q Consensus 21 ~~eeD~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~~yv 100 (221)
.+++|+.||+++|.||||+.+|++.+||+||+++|++||++||.||+.+|++.|.+++||||+++||+.||++|||.+|+
T Consensus 2 ~~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~i 81 (93)
T 1n1j_A 2 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYV 81 (93)
T ss_dssp -----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGGH
T ss_pred CCcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhhH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 027605 101 SPLKIYLNKYRE 112 (221)
Q Consensus 101 ~~Lk~~Le~yRe 112 (221)
++++.+|++||+
T Consensus 82 ~~~~~~l~~~r~ 93 (93)
T 1n1j_A 82 EPLKLYLQKFRE 93 (93)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999985
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.86 E-value=6.7e-22 Score=145.37 Aligned_cols=69 Identities=20% Similarity=0.306 Sum_probs=64.9
Q ss_pred ccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhc
Q 027605 25 DRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 25 D~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~L 94 (221)
...||+|+|.||||+++| +++||+||+++|++|+++||++|+++|++.|.+++||||+++||+.||+.+
T Consensus 2 ~~~LP~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 2 RRTVPRGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp --CCCHHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 368999999999999999 799999999999999999999999999999999999999999999998764
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.80 E-value=8.4e-20 Score=151.42 Aligned_cols=75 Identities=21% Similarity=0.328 Sum_probs=71.8
Q ss_pred cCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCCcchH
Q 027605 26 RFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVS 101 (221)
Q Consensus 26 ~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~~yv~ 101 (221)
..||+++|.||||+.||. .+||+||+++|++|+++|+.+|+++|++.|++++||||+++||++||..|||++|++
T Consensus 3 ~~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d 77 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVED 77 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTT
T ss_pred ccCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCc
Confidence 379999999999999986 999999999999999999999999999999999999999999999999999998765
No 6
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.75 E-value=3.3e-18 Score=122.23 Aligned_cols=66 Identities=29% Similarity=0.424 Sum_probs=63.9
Q ss_pred CCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhc
Q 027605 27 FLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 27 ~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~L 94 (221)
.||+++|.||||+. ++.+||+||+.+|++|+++||.+|+.+|++.|.+++||||+++||..|++.|
T Consensus 2 ~lP~a~v~Ri~k~~--~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 59999999999999 5799999999999999999999999999999999999999999999999987
No 7
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.74 E-value=6.1e-18 Score=133.05 Aligned_cols=92 Identities=16% Similarity=0.286 Sum_probs=80.2
Q ss_pred ccccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCCcchHH
Q 027605 23 EQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSP 102 (221)
Q Consensus 23 eeD~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~~yv~~ 102 (221)
.+|+.||++.|.||||.. ...+||+|+.++|.+|+.+|+..|+.+|...|++++||||+++||+.||+++|+..|..+
T Consensus 3 ~~d~~lP~a~I~Ri~r~~--g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~ 80 (111)
T 3b0c_T 3 TREPEIASSLIKQIFSHY--VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMP 80 (111)
T ss_dssp -------CHHHHHHHHHH--HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBC
T ss_pred CCCCCCCHHHHHHHHHHC--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcccccc
Confidence 368899999999999999 479999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 027605 103 LKIYLNKYRETEGE 116 (221)
Q Consensus 103 Lk~~Le~yRe~~k~ 116 (221)
+..++++|...+-.
T Consensus 81 l~~l~~~~lp~E~~ 94 (111)
T 3b0c_T 81 LHVLVERHLPLEYR 94 (111)
T ss_dssp HHHHHHHHSCHHHH
T ss_pred HHHHHHHhCcHHHH
Confidence 99999999544433
No 8
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.70 E-value=5.5e-18 Score=138.32 Aligned_cols=97 Identities=23% Similarity=0.354 Sum_probs=62.4
Q ss_pred ccccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCccCcchHHHHHhh---cCCCc
Q 027605 23 EQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKC-QREKRKTINGDDLLWAMTT---LGFEN 98 (221)
Q Consensus 23 eeD~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic-~~ekRKTIsaeDVl~ALe~---LGF~~ 98 (221)
..++.||++.|.||||.. |+..+||+||..+|++|++.||.+|+.+|+..| +..+||||+++||..|+.. |+|..
T Consensus 15 ~~~~~LPlaRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 15 TAETFLPLSRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp --------------CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred ccCCCCCHHHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 467899999999999998 778899999999999999999999999999999 9999999999999999985 55555
Q ss_pred chHHHHHHHHHHHHHHhhhhhh
Q 027605 99 YVSPLKIYLNKYRETEGEKNSM 120 (221)
Q Consensus 99 yv~~Lk~~Le~yRe~~k~Kks~ 120 (221)
++-|.+..+.+|+++.+.|+..
T Consensus 94 divP~ki~l~~~~~~~~~~~~~ 115 (140)
T 2byk_A 94 QIVPQKIRVHQFQEMLRLNRSA 115 (140)
T ss_dssp TTSCSCC---------------
T ss_pred ccccchhhHHHHHHHHHhcccc
Confidence 5559999999999998887765
No 9
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.66 E-value=1.9e-16 Score=125.47 Aligned_cols=78 Identities=24% Similarity=0.324 Sum_probs=70.3
Q ss_pred CccccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCCcch
Q 027605 22 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV 100 (221)
Q Consensus 22 ~eeD~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~~yv 100 (221)
......||++.|.||||.. |+..+||+||..+|++|+++||.+|+.+|++.|+..+||||+++||..|++..+.-+|+
T Consensus 36 d~k~~~lPvaRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL 113 (119)
T 4g92_C 36 DYKIHQLPLARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFL 113 (119)
T ss_dssp CSSCCSSCHHHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred ccccCCCCHHHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHH
Confidence 3446679999999999976 88899999999999999999999999999999999999999999999999876654554
No 10
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.62 E-value=7.9e-16 Score=127.61 Aligned_cols=73 Identities=21% Similarity=0.299 Sum_probs=68.6
Q ss_pred CCCccccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhc
Q 027605 20 SDKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 20 s~~eeD~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~L 94 (221)
-++.+|+.||+++|.||||+. ...+||+||++.|++|+++|+.+|+.+|.+.|++++||||+++||++||+..
T Consensus 75 v~d~~~l~lP~a~V~Ri~k~~--g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 75 VEDYDGELFGRATVRRILKRA--GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp STTCCSCCCCHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCccccccCCccHHHHHHHHc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 456788999999999999999 4789999999999999999999999999999999999999999999999853
No 11
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.61 E-value=8.5e-16 Score=117.54 Aligned_cols=81 Identities=25% Similarity=0.285 Sum_probs=69.8
Q ss_pred CCccccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCCcch
Q 027605 21 DKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV 100 (221)
Q Consensus 21 ~~eeD~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~~yv 100 (221)
....+..||.+.|.||||.. |+..+||+||..+|++|++.||.+|+.+|.+.|++.+||||+++||..|++..++.+|+
T Consensus 13 ~~~~~~~lP~arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL 91 (97)
T 1n1j_B 13 KDFRVQELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFL 91 (97)
T ss_dssp -------CCHHHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred CCcCCCcCCHHHHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHH
Confidence 34566789999999999998 66789999999999999999999999999999999999999999999999988888776
Q ss_pred HH
Q 027605 101 SP 102 (221)
Q Consensus 101 ~~ 102 (221)
..
T Consensus 92 ~d 93 (97)
T 1n1j_B 92 ID 93 (97)
T ss_dssp TT
T ss_pred Hh
Confidence 53
No 12
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.55 E-value=9.6e-15 Score=113.33 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=70.5
Q ss_pred CCccccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCCcc
Q 027605 21 DKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENY 99 (221)
Q Consensus 21 ~~eeD~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~~y 99 (221)
.++....||+++|.||++... ..+||+|+.+.|++|+++|+..|+.+|.+.|++++||||+++||..||+.++|.-|
T Consensus 22 ~r~~i~~ip~~~I~Rlar~~G--v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lY 98 (102)
T 1id3_B 22 LRDNIQGITKPAIRRLARRGG--VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 98 (102)
T ss_dssp --CCGGGSCHHHHHHHHHHTT--CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEE
T ss_pred HHhccCCCCHHHHHHHHHHcC--chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 345667799999999999986 37899999999999999999999999999999999999999999999999999766
No 13
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.55 E-value=7.1e-15 Score=109.94 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=70.6
Q ss_pred CccccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCCcc
Q 027605 22 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENY 99 (221)
Q Consensus 22 ~eeD~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~~y 99 (221)
++....||+++|.||+|... ..+||+|+.+.|++|+++|+..|+.+|.+.|++++||||+++||..||+.+||+-|
T Consensus 5 r~~~~~ip~~~I~Riar~~G--v~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 5 RDNIQGITKPAIRRLARRGG--VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp GGGCCSSCHHHHHHHHHHTT--CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred cccCCCCCHHHHHHHHHHcC--chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 45566899999999999986 37899999999999999999999999999999999999999999999999998765
No 14
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.49 E-value=7e-14 Score=100.69 Aligned_cols=64 Identities=28% Similarity=0.458 Sum_probs=61.5
Q ss_pred CCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHh
Q 027605 27 FLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMT 92 (221)
Q Consensus 27 ~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe 92 (221)
.||++.|.||+|+. ...+||+++..+|++++.+|+..|+.+|+..|++.|||||+++||..|++
T Consensus 6 ~lp~a~v~Rl~r~~--g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc--CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 69999999999997 36899999999999999999999999999999999999999999999986
No 15
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.47 E-value=8.9e-14 Score=107.46 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=70.9
Q ss_pred CCccccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCCcc
Q 027605 21 DKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENY 99 (221)
Q Consensus 21 ~~eeD~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~~y 99 (221)
.++.+..||+++|.||++.... .+||.|+.+.|.+++++|+..|+.+|...|++++||||+++||..||+.++|+-|
T Consensus 23 ~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lY 99 (103)
T 1tzy_D 23 LRDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99 (103)
T ss_dssp CCCGGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEE
T ss_pred hhhhcccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCc
Confidence 3455666999999999999864 6899999999999999999999999999999999999999999999999998755
No 16
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.45 E-value=1.3e-13 Score=106.72 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=64.2
Q ss_pred CccccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCCcc
Q 027605 22 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENY 99 (221)
Q Consensus 22 ~eeD~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~~y 99 (221)
++....||+++|.||++.... .+||.|+.+.|.+++++|+..|+.+|...|++++||||+++||..||+.++|+-|
T Consensus 24 r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lY 99 (103)
T 2yfw_B 24 RDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99 (103)
T ss_dssp ------CCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC----
T ss_pred hhhhccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCc
Confidence 455566999999999999864 6899999999999999999999999999999999999999999999999998755
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.28 E-value=4e-12 Score=97.51 Aligned_cols=78 Identities=15% Similarity=0.191 Sum_probs=59.9
Q ss_pred cccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCCcchHH
Q 027605 24 QDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSP 102 (221)
Q Consensus 24 eD~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~~yv~~ 102 (221)
-...||.+.|.||||.. |+..+||.||..+|.++++.|+.+|+..|...|+..+||||+++||..|++.-+..+|+..
T Consensus 8 ~~~~fPvaRIkrimK~~-~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~d 85 (98)
T 1jfi_A 8 YNARFPPARIKKIMQTD-EEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANKA 85 (98)
T ss_dssp --CCCCHHHHHHHHTTS-TTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC----------
T ss_pred cCCCCChHHHHHHHHcC-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHHh
Confidence 45789999999999975 5567999999999999999999999999999999999999999999999987666655543
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.77 E-value=2.8e-08 Score=74.09 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=63.9
Q ss_pred ccCCchhHHHHHHhhcCC---CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcC
Q 027605 25 DRFLPIANVSRIMKKSLP---ANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLG 95 (221)
Q Consensus 25 D~~LPrAtV~RImK~aLP---~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LG 95 (221)
++.||++.+.||+|++.. .+.+++.+|..+||++++.|+--|...|+..|.+.||+||.++||--|.+--|
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 478999999999999943 46899999999999999999999999999999999999999999998876433
No 19
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.71 E-value=1.8e-08 Score=82.73 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=65.2
Q ss_pred HHHHHHhhcCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCCcchHHHHHHHHHH
Q 027605 32 NVSRIMKKSLP-ANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKY 110 (221)
Q Consensus 32 tV~RImK~aLP-~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~~yv~~Lk~~Le~y 110 (221)
+|.||+++... .++.||++++.+|.+.+..|+.-|+..+...|++.|||||+++||.-++++. +.|..+|..|
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn------~~L~~~L~~~ 97 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 57888888754 3689999999999999999999999999999999999999999999999984 4555555555
Q ss_pred HHHH
Q 027605 111 RETE 114 (221)
Q Consensus 111 Re~~ 114 (221)
.+..
T Consensus 98 ~~el 101 (140)
T 3vh5_A 98 SDEL 101 (140)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 20
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.64 E-value=1.2e-07 Score=69.49 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=61.1
Q ss_pred cCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHh
Q 027605 26 RFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMT 92 (221)
Q Consensus 26 ~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe 92 (221)
-.||.++|.+|+++.. -.+||+|+...|.+-++..+..|+.+|.+.+++.+|||++++||-.||+
T Consensus 5 s~lp~~~v~~iaes~G--i~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIG--VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTT--CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 3699999999999984 3589999999999999999999999999999999999999999999985
No 21
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.61 E-value=1e-07 Score=75.81 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=68.4
Q ss_pred HHHHHHhhcCCC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCCcchHHHHHHHHHH
Q 027605 32 NVSRIMKKSLPA-NAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKY 110 (221)
Q Consensus 32 tV~RImK~aLP~-n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~~yv~~Lk~~Le~y 110 (221)
+|.||+++...+ ++.||++++.+|.+.+..|+.-|+..+...|++.|||||+++||.-++++. +.|..+|..|
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~------~~L~~~l~~~ 105 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS------NSLLKYITDK 105 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 588999988643 578999999999999999999999999999999999999999999999984 6777777777
Q ss_pred HHHH
Q 027605 111 RETE 114 (221)
Q Consensus 111 Re~~ 114 (221)
.+..
T Consensus 106 ~~el 109 (113)
T 4dra_A 106 SEEI 109 (113)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 22
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.60 E-value=8.8e-08 Score=72.22 Aligned_cols=67 Identities=16% Similarity=0.125 Sum_probs=61.7
Q ss_pred cCCchhHHHHHHhhcCC-----CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHh
Q 027605 26 RFLPIANVSRIMKKSLP-----ANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMT 92 (221)
Q Consensus 26 ~~LPrAtV~RImK~aLP-----~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe 92 (221)
+.||++.+.||+|++.. .+.+++.+|..+||++++.|+--|...|+..|.+.||+||.++|+--|.+
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 46899999999999873 26799999999999999999999999999999999999999999988865
No 23
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.59 E-value=8.2e-08 Score=74.66 Aligned_cols=70 Identities=17% Similarity=0.169 Sum_probs=59.6
Q ss_pred CccccCCchhHHHHHHhhcCCC------CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHH
Q 027605 22 KEQDRFLPIANVSRIMKKSLPA------NAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAM 91 (221)
Q Consensus 22 ~eeD~~LPrAtV~RImK~aLP~------n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~AL 91 (221)
+..++.||++.+.||+|++..+ +.+++.+|..+||++++.|+--|...|+..|.+.+|+||.++||--|.
T Consensus 22 kst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ 97 (100)
T 2yfv_A 22 RSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLAR 97 (100)
T ss_dssp ------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred ccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHH
Confidence 4567889999999999999732 689999999999999999999999999999999999999999998775
No 24
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.52 E-value=2.6e-07 Score=70.67 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=59.2
Q ss_pred HHHHHHhhcCCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhc
Q 027605 32 NVSRIMKKSLPAN-AKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 32 tV~RImK~aLP~n-~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~L 94 (221)
+|.||+.+.++.. +.||+++..+|.+.+..++.-|+..+...|++.|||||+++||.-++++.
T Consensus 17 ~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn 80 (90)
T 3v9r_A 17 RVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQ 80 (90)
T ss_dssp HHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 5789999999865 89999999999999999999999999999999999999999999998874
No 25
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.48 E-value=4.3e-07 Score=71.34 Aligned_cols=77 Identities=13% Similarity=0.130 Sum_probs=66.5
Q ss_pred HHHHHHhhcCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCCcchHHHHHHHHHH
Q 027605 32 NVSRIMKKSLP-ANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKY 110 (221)
Q Consensus 32 tV~RImK~aLP-~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~~yv~~Lk~~Le~y 110 (221)
+|.||+++..- .+.++|+++..+|.+.+..|+.-|+.+|...|++.|||||+.+||.-|+++. +.|...|..|
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn------~~l~~~l~~~ 97 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC------HHHHHHHHHH
Confidence 48899988862 2479999999999999999999999999999999999999999999999984 5666666666
Q ss_pred HHHH
Q 027605 111 RETE 114 (221)
Q Consensus 111 Re~~ 114 (221)
.+..
T Consensus 98 ~~el 101 (107)
T 3b0b_B 98 SDEL 101 (107)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 26
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.48 E-value=1.7e-07 Score=78.10 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=63.0
Q ss_pred CccccCCchhHHHHHHhhcCCC-----CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHh
Q 027605 22 KEQDRFLPIANVSRIMKKSLPA-----NAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMT 92 (221)
Q Consensus 22 ~eeD~~LPrAtV~RImK~aLP~-----n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe 92 (221)
+..++.||++.+.||||++..+ +.+++.+|+++||++++.|+--|...|+..|.+.+|+||.++||--|+.
T Consensus 72 kSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArr 147 (156)
T 3r45_A 72 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 147 (156)
T ss_dssp ---CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 4567889999999999998732 5799999999999999999999999999999999999999999988764
No 27
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.47 E-value=1.9e-07 Score=76.55 Aligned_cols=74 Identities=18% Similarity=0.148 Sum_probs=64.7
Q ss_pred CccccCCchhHHHHHHhhcCC-----CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcC
Q 027605 22 KEQDRFLPIANVSRIMKKSLP-----ANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLG 95 (221)
Q Consensus 22 ~eeD~~LPrAtV~RImK~aLP-----~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LG 95 (221)
+..++.||++.+.|||+++.. .+.+++.+|+++||++++.|+--|...|+..|.+.+|+||.++||--|..=-|
T Consensus 56 kst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg 134 (140)
T 3nqu_A 56 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 134 (140)
T ss_dssp ---CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred cccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhcc
Confidence 456789999999999999873 26799999999999999999999999999999999999999999988876433
No 28
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.44 E-value=4.9e-07 Score=73.75 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=65.9
Q ss_pred CccccCCchhHHHHHHhhcCC---CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhc
Q 027605 22 KEQDRFLPIANVSRIMKKSLP---ANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 22 ~eeD~~LPrAtV~RImK~aLP---~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~L 94 (221)
+..++.||++.+.||++++.. .+.+++.+|+++||++++.|+--|...|+..|.+.+|+||.++||--|..--
T Consensus 57 kst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rir 132 (136)
T 1tzy_C 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 (136)
T ss_dssp HCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHh
Confidence 346788999999999999942 4789999999999999999999999999999999999999999999887643
No 29
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.35 E-value=6.7e-07 Score=71.94 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=64.1
Q ss_pred cccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhh
Q 027605 24 QDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTT 93 (221)
Q Consensus 24 eD~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~ 93 (221)
-.+.||.+.|.|+||+.-....+|+.+|...|..+.+-|+..|...|...|.+.+|++|+++||..|++.
T Consensus 24 agLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 24 AGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp HTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 4689999999999999864345999999999999999999999999999999999999999999999874
No 30
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.20 E-value=5.5e-06 Score=60.29 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=56.4
Q ss_pred hHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhh
Q 027605 31 ANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTT 93 (221)
Q Consensus 31 AtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~ 93 (221)
..|.||+|+.. -.+++.++...|.+.+..++.-|..+|...|.+.+||||+++||--|++.
T Consensus 5 ~~i~~iLk~~G--~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKELN--VQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHTT--CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHCC--CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 36899999984 45899999999999999999999999999999999999999999999874
No 31
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.19 E-value=4.4e-06 Score=66.71 Aligned_cols=69 Identities=13% Similarity=0.203 Sum_probs=63.3
Q ss_pred cccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhh
Q 027605 24 QDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTT 93 (221)
Q Consensus 24 eD~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~ 93 (221)
-.+.||.+.|.|+||+.-- .-+|+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|++.
T Consensus 20 agL~fPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 20 AGLQFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HTCSSCHHHHHHHHHHTTS-CSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCeeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 4689999999999999843 34999999999999999999999999999999999999999999999883
No 32
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.16 E-value=5.6e-06 Score=66.62 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=63.1
Q ss_pred cccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHh
Q 027605 24 QDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMT 92 (221)
Q Consensus 24 eD~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe 92 (221)
-.+.||.+.|.|+||+.-. .-+|+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|++
T Consensus 22 agLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 22 AGLQFPVGRVHRLLRKGNY-AERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp HTCSSCHHHHHHHHHHTTS-SSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CceeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 4689999999999999743 3499999999999999999999999999999999999999999999988
No 33
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.14 E-value=5.1e-06 Score=67.01 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=63.8
Q ss_pred ccccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhh
Q 027605 23 EQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTT 93 (221)
Q Consensus 23 eeD~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~ 93 (221)
.-.+.||.+.|.|+||+.-- .-+|+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|++.
T Consensus 21 ragLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 21 KAGLTFPVGRVHRLLRRGNY-AQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp GGTCSSCHHHHHHHHHTTCS-CSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cCCeecCHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 35689999999999999743 34999999999999999999999999999999999999999999999883
No 34
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.12 E-value=7.2e-06 Score=65.20 Aligned_cols=68 Identities=18% Similarity=0.265 Sum_probs=63.2
Q ss_pred cccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHh
Q 027605 24 QDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMT 92 (221)
Q Consensus 24 eD~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe 92 (221)
-.+.||.+.|.|+||+.-- .-+|+.+|...|..+.+.|...|...|...|++.+|++|+++||..|++
T Consensus 19 agLqfPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 19 AGVIFPVGRMLRYIKKGHP-KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp HTCSSCHHHHHHHHHHHSS-SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cCccCChHHHHHHHHcCcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 4689999999999999853 4599999999999999999999999999999999999999999999988
No 35
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.09 E-value=4.5e-06 Score=66.89 Aligned_cols=53 Identities=23% Similarity=0.339 Sum_probs=45.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCCc
Q 027605 46 KISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEN 98 (221)
Q Consensus 46 kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~~ 98 (221)
+||.|+.+.+.+...+|+.-|..+|...|++.+||||+++||.-||++.|-.-
T Consensus 64 RIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~l 116 (121)
T 2ly8_A 64 RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTL 116 (121)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGG
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcC
Confidence 57777777777777777788888999999999999999999999999988643
No 36
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.07 E-value=9.4e-06 Score=67.00 Aligned_cols=69 Identities=16% Similarity=0.216 Sum_probs=63.4
Q ss_pred cccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhh
Q 027605 24 QDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTT 93 (221)
Q Consensus 24 eD~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~ 93 (221)
-.+.||.+.|.|+||+.-- .-+|+.+|...|..+.+.|+..|...|...|+..+|++|+++||..|++.
T Consensus 41 agLqFPVgrI~R~LK~~~~-a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 41 AGLQFPVGRVHRLLRKGNY-SERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HTCSSCHHHHHHHHHHTTS-CSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCeeccHHHHHHHHHcccc-ccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 4688999999999999843 35999999999999999999999999999999999999999999999883
No 37
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.05 E-value=9.6e-06 Score=65.32 Aligned_cols=63 Identities=25% Similarity=0.347 Sum_probs=59.3
Q ss_pred hHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhc
Q 027605 31 ANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 31 AtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~L 94 (221)
.-|+|++|++-| ++.||.+|...|...+..+..-|+.||...|...+|+||+..||..|++-|
T Consensus 37 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 37 IYIYTVLKQVHP-DTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 568999999998 689999999999999999999999999999999999999999999998754
No 38
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.01 E-value=1.2e-05 Score=64.92 Aligned_cols=63 Identities=29% Similarity=0.391 Sum_probs=59.3
Q ss_pred hHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhc
Q 027605 31 ANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 31 AtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~L 94 (221)
.-|+|++|++-| ++.||.+|...|...+..+..-|+.||...|...+|+||+..||..|++-|
T Consensus 40 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 40 IYVYKVLKQVHP-DTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 469999999998 689999999999999999999999999999999999999999999998754
No 39
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=98.00 E-value=2.9e-05 Score=58.78 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=62.7
Q ss_pred CCCCccccCCchhHHHHHHhhcCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhh
Q 027605 19 ISDKEQDRFLPIANVSRIMKKSLP-ANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTT 93 (221)
Q Consensus 19 ~s~~eeD~~LPrAtV~RImK~aLP-~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~ 93 (221)
|....-+..+|..+|.||++.... +++||++||..++.+...+||.--...|.+.++.++..+|..+|+-+.+-.
T Consensus 4 ~~~~~~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQ 79 (84)
T 4dra_E 4 MEGAGAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQ 79 (84)
T ss_dssp -------CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cccCCCCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 344455778999999999998885 689999999999999999999999999999999999999999999887643
No 40
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.92 E-value=2.5e-05 Score=65.99 Aligned_cols=69 Identities=14% Similarity=0.217 Sum_probs=63.3
Q ss_pred cccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHh
Q 027605 24 QDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMT 92 (221)
Q Consensus 24 eD~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe 92 (221)
..+.||.+.|.|+||+.-....+|+.+|...|..+.+.++..|...|...|++.+|++|+++||..|++
T Consensus 102 agl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 102 AGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp SSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 468999999999999974323589999999999999999999999999999999999999999999987
No 41
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.86 E-value=5.8e-05 Score=56.60 Aligned_cols=70 Identities=13% Similarity=0.218 Sum_probs=62.1
Q ss_pred ccccCCchhHHHHHHhhcCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHh
Q 027605 23 EQDRFLPIANVSRIMKKSLP-ANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMT 92 (221)
Q Consensus 23 eeD~~LPrAtV~RImK~aLP-~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe 92 (221)
+.+..+|..+|.||++.... +.+||++||..++.+....||.--...|.+.++.++-..|..+|+-+.+-
T Consensus 4 ~~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~p 74 (81)
T 3b0b_C 4 EREGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLP 74 (81)
T ss_dssp ---CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHH
Confidence 45778999999999999886 57899999999999999999999999999999989999999999988664
No 42
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.79 E-value=1.7e-05 Score=69.80 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=53.1
Q ss_pred HHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcC
Q 027605 35 RIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLG 95 (221)
Q Consensus 35 RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LG 95 (221)
||++... .-+||.++.+.+.+...+|+.-|..+|...|++.+||||+++||.-||+.+|
T Consensus 169 RlaRrgG--VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 169 EDGDKGG--VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp TTSCCTT--CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred HHhhcCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 5555552 3579999999999999999999999999999999999999999999999775
No 43
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.77 E-value=6.4e-05 Score=63.46 Aligned_cols=63 Identities=21% Similarity=0.361 Sum_probs=59.1
Q ss_pred hHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhc
Q 027605 31 ANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 31 AtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~L 94 (221)
.-|+|++|+.-| ++.||+||...|...+..+..-|+.+|.+.+...+|+||+..||..|++-+
T Consensus 7 ~yi~kvLkqv~p-~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 7 SYIYKVLKQTHP-DTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp HHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHcccCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 468999999998 688999999999999999999999999999999999999999999998843
No 44
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.54 E-value=0.00039 Score=51.60 Aligned_cols=66 Identities=15% Similarity=0.320 Sum_probs=62.1
Q ss_pred CCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhh
Q 027605 27 FLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTT 93 (221)
Q Consensus 27 ~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~ 93 (221)
-|++..+..++++.=| +..+.+|+.++|.+.|.+||.-++..|-..|++.+-.||...||.-.|++
T Consensus 5 vl~k~~L~~Lv~~idp-~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDP-NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 4789999999999976 79999999999999999999999999999999999999999999988875
No 45
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.52 E-value=0.00036 Score=52.98 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=61.9
Q ss_pred CCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccCcchHHHHHhhcCC
Q 027605 27 FLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREK-RKTINGDDLLWAMTTLGF 96 (221)
Q Consensus 27 ~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ek-RKTIsaeDVl~ALe~LGF 96 (221)
.||++.|.|||...+ +..|+.+...+|.=.+.+||--|..+|.+++.+.+ +.-|.+.||-+|.+.|.-
T Consensus 16 ~f~k~~vKrl~~~~~--~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~~ 84 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT--GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKS 84 (89)
T ss_dssp CCCHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Confidence 699999999999998 67999999999999999999999999999999864 558999999999887753
No 46
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.00048 Score=60.64 Aligned_cols=71 Identities=17% Similarity=0.166 Sum_probs=62.0
Q ss_pred ccCCchhHHHHHHhhcCCC------CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcC
Q 027605 25 DRFLPIANVSRIMKKSLPA------NAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLG 95 (221)
Q Consensus 25 D~~LPrAtV~RImK~aLP~------n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LG 95 (221)
.+.+|+....|++++...+ +.+++.+|..+||++++.|+--|-..+|-.|.+.+|.||.+.|+--|..--|
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 4678999999999988643 5799999999999999999999999999999999999999999999976443
No 47
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0047 Score=47.21 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=41.9
Q ss_pred CCchhHHHHHHhhcCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027605 27 FLPIANVSRIMKKSLP-ANAKISKEAKETVQECVSEFISFITGEASDKCQR 76 (221)
Q Consensus 27 ~LPrAtV~RImK~aLP-~n~kISkDAk~al~kcateFI~yLTseAneic~~ 76 (221)
.||+.+|.||++.... +++||++||..++++...+||.--...|.+..+.
T Consensus 1 ~ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 1 MLSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp CCCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999997774 4799999999999999999998777777655433
No 48
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=94.46 E-value=0.084 Score=42.13 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=48.3
Q ss_pred CchhHHHHHHhhcC----C--CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCccCcchHHHHH
Q 027605 28 LPIANVSRIMKKSL----P--ANAKISKEAKETVQECVSEFISFITGEASDKCQRE---KRKTINGDDLLWAM 91 (221)
Q Consensus 28 LPrAtV~RImK~aL----P--~n~kISkDAk~al~kcateFI~yLTseAneic~~e---kRKTIsaeDVl~AL 91 (221)
+|+....|++++.. + .+.+.+.+|..+||++++.|+--|-..+|-.|.+. |-|-|+.+ +...+
T Consensus 2 I~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~-iy~e~ 73 (121)
T 2ly8_A 2 ISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGL-IYEEV 73 (121)
T ss_dssp CSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSC-HHHHH
T ss_pred CCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHH-HHHHH
Confidence 67777788877653 2 26899999999999999999999999998777765 33677764 44444
No 49
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.19 E-value=0.45 Score=40.51 Aligned_cols=66 Identities=14% Similarity=0.214 Sum_probs=49.5
Q ss_pred CchhHHHHHHhhcCC-CCcccCHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccCcchHHHHHhh
Q 027605 28 LPIANVSRIMKKSLP-ANAKISKEAKETVQECVS----EFISFITGEASDKCQREKRKTINGDDLLWAMTT 93 (221)
Q Consensus 28 LPrAtV~RImK~aLP-~n~kISkDAk~al~kcat----eFI~yLTseAneic~~ekRKTIsaeDVl~ALe~ 93 (221)
++...+..|++..+. .+..++.++.+.|.+.+. -.+.-+...|...|...++++|+.+||..|++.
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 455666667665543 246799999999988876 244445556777888889999999999999986
No 50
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=83.44 E-value=4.5 Score=34.10 Aligned_cols=77 Identities=14% Similarity=0.101 Sum_probs=55.2
Q ss_pred CchhHHHHHHhhcCCC---CcccCHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhcCCCccCcchHHHHHh
Q 027605 28 LPIANVSRIMKKSLPA---NAKISKEAKETVQECV------------SEFISFITGEASDKCQREKRKTINGDDLLWAMT 92 (221)
Q Consensus 28 LPrAtV~RImK~aLP~---n~kISkDAk~al~kca------------teFI~yLTseAneic~~ekRKTIsaeDVl~ALe 92 (221)
|+...+..+++..+.. ...++.++...+.+.+ --++.-+...|...|..+++.+|+.+||..+++
T Consensus 193 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 4446666666655432 3479999999888887 234455556777888888899999999999999
Q ss_pred hcCCCcchHHHH
Q 027605 93 TLGFENYVSPLK 104 (221)
Q Consensus 93 ~LGF~~yv~~Lk 104 (221)
.+....+...++
T Consensus 273 ~~~~~~~~~~l~ 284 (389)
T 1fnn_A 273 EVLFGISEEVLI 284 (389)
T ss_dssp HHSCCCCHHHHH
T ss_pred HHhhhhHHHHHH
Confidence 887665554443
No 51
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=80.82 E-value=2.2 Score=38.65 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=47.9
Q ss_pred CchhHHHHHHhhcCC-CCcccCHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCccCcchHHHHHhh
Q 027605 28 LPIANVSRIMKKSLP-ANAKISKEAKETVQECV-S---EFISFITGEASDKCQREKRKTINGDDLLWAMTT 93 (221)
Q Consensus 28 LPrAtV~RImK~aLP-~n~kISkDAk~al~kca-t---eFI~yLTseAneic~~ekRKTIsaeDVl~ALe~ 93 (221)
++...+..+++..+. .+..++.++...+.+.+ . -....|...|..+|..+++..|+.+||..|+.-
T Consensus 366 ~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 366 YTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 445556666654432 24578999998888877 2 244555567888899999999999999999865
No 52
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=80.15 E-value=3.4 Score=34.61 Aligned_cols=66 Identities=6% Similarity=0.089 Sum_probs=50.2
Q ss_pred hhHHHHHHhhcCC---CCcccCHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcC
Q 027605 30 IANVSRIMKKSLP---ANAKISKEAKETVQECVS------EFISFITGEASDKCQREKRKTINGDDLLWAMTTLG 95 (221)
Q Consensus 30 rAtV~RImK~aLP---~n~kISkDAk~al~kcat------eFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LG 95 (221)
...+..|++..+. ....++.++.+.+.+.+. -.+.-+...|...|..+++.+|+.+||..|++++.
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 5666666665442 146799999998888876 34555666777888888899999999999998874
No 53
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=76.30 E-value=7 Score=39.79 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=50.0
Q ss_pred cccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHh
Q 027605 24 QDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMT 92 (221)
Q Consensus 24 eD~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe 92 (221)
-.+.+|...|.|++|... .-+|+..|...|.-..+-...-|--.|-..|+..+++.|++.||..|+.
T Consensus 101 ~~l~~pv~~~~~~l~~~~--~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 101 NPLSLPVEKIHPLLKEVL--GYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp SSCSSCHHHHHHHHHHHH--CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred CCccccHHHHHHHhhccc--ccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCcccccccc
Confidence 457899999999997776 3589988877776544433333444455667778899999999998886
No 54
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=75.38 E-value=7 Score=32.56 Aligned_cols=71 Identities=7% Similarity=0.067 Sum_probs=51.3
Q ss_pred CchhHHHHHHhhcCC---CCcccCHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCCc
Q 027605 28 LPIANVSRIMKKSLP---ANAKISKEAKETVQECVS------EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEN 98 (221)
Q Consensus 28 LPrAtV~RImK~aLP---~n~kISkDAk~al~kcat------eFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~~ 98 (221)
|....+..|++..+. ....++.++...+.+.+. ..+.-+...|...+..+++.+|+.+||..|++++....
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~ 276 (386)
T 2qby_A 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERDR 276 (386)
T ss_dssp CCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhch
Confidence 455667777765432 135789999988888775 23444666777888888899999999999999875433
No 55
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=71.73 E-value=3.5 Score=28.48 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=32.7
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCccCcchHHHHHhhc
Q 027605 52 KETVQECVSEF----ISFITGEASDKCQREKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 52 k~al~kcateF----I~yLTseAneic~~ekRKTIsaeDVl~ALe~L 94 (221)
...|.+.+.-| |.-|..+|...|..+++..|+.+|+..||+++
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 34444444434 66777888888888999999999999999864
No 56
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=69.05 E-value=11 Score=28.18 Aligned_cols=38 Identities=11% Similarity=0.133 Sum_probs=31.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcC
Q 027605 46 KISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLG 95 (221)
Q Consensus 46 kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LG 95 (221)
+.+..++.+|.. |.+.|...+...|.++|++.||=+-+
T Consensus 5 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 5 RLTNKFQLALAD------------AQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred hhhHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 577777777766 78889999999999999999985443
No 57
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=67.31 E-value=22 Score=29.76 Aligned_cols=51 Identities=14% Similarity=0.051 Sum_probs=36.1
Q ss_pred CcccCHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhcCCCccCcchHHHHHhhc
Q 027605 44 NAKISKEAKETVQECVSEF-----------------------ISFITGEASDKCQREKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 44 n~kISkDAk~al~kcateF-----------------------I~yLTseAneic~~ekRKTIsaeDVl~ALe~L 94 (221)
++.|++++.+.+.+.+... ...|...|...|.-++|..|+.+||..++...
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 5678888888887655322 12233455566777899999999999998854
No 58
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=65.86 E-value=35 Score=32.02 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=38.9
Q ss_pred cccCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhcCCCccCcchHHHHHhh
Q 027605 45 AKISKEAKETVQECVS-------------EFISFITGEASDKCQREKRKTINGDDLLWAMTT 93 (221)
Q Consensus 45 ~kISkDAk~al~kcat-------------eFI~yLTseAneic~~ekRKTIsaeDVl~ALe~ 93 (221)
..++.|+...|.+.+. --+.-|...|..+|..+++..|+.+||.+|++.
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4689999999988654 233344557888999999999999999999964
No 59
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=65.85 E-value=7.4 Score=29.69 Aligned_cols=37 Identities=11% Similarity=0.243 Sum_probs=31.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhc
Q 027605 46 KISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 46 kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~L 94 (221)
+++..++.+|.. |.+.|...+...|.++|++.||=+-
T Consensus 6 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~ 42 (146)
T 3fh2_A 6 RFTDRARRVIVL------------AQEEARMLNHNYIGTEHILLGLIHE 42 (146)
T ss_dssp GBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHH------------HHHHHHHcCCCCchHHHHHHHHHhC
Confidence 577888888776 7788999999999999999998654
No 60
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=64.56 E-value=9.1 Score=28.83 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=31.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcC
Q 027605 46 KISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLG 95 (221)
Q Consensus 46 kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LG 95 (221)
++++.++.+|.. |.+.|...+...|.++|++.||=+-+
T Consensus 5 ~~t~~~~~al~~------------A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (150)
T 2y1q_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (150)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 577888888766 77889999999999999999985544
No 61
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=61.20 E-value=20 Score=29.79 Aligned_cols=51 Identities=12% Similarity=-0.040 Sum_probs=39.6
Q ss_pred CcccCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCccCcchHHHHHhhc
Q 027605 44 NAKISKEAKETVQECVSE-------FISFITGEASDKCQREKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 44 n~kISkDAk~al~kcate-------FI~yLTseAneic~~ekRKTIsaeDVl~ALe~L 94 (221)
.+.+++++.+.|.+.+.. -+.-+...|...|..++|.+|+.+||..|+..+
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 468999999999887653 334455566677878899999999999998854
No 62
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=60.97 E-value=7.8 Score=27.15 Aligned_cols=31 Identities=32% Similarity=0.163 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCCccCcchHHHHHhhcCC
Q 027605 66 ITGEASDKCQREKRKTINGDDLLWAMTTLGF 96 (221)
Q Consensus 66 LTseAneic~~ekRKTIsaeDVl~ALe~LGF 96 (221)
|..+|.-.|..+++..|+.+|+..||++.-.
T Consensus 40 l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~ 70 (82)
T 2dzn_B 40 IMQEAGLRAVRKNRYVILQSDLEEAYATQVK 70 (82)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHHHHHHc
Confidence 3345666677778899999999999998743
No 63
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=60.93 E-value=7.1 Score=29.20 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=27.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHh
Q 027605 47 ISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMT 92 (221)
Q Consensus 47 ISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe 92 (221)
++++++.+|+. |.+.|...+...|.++|++.||=
T Consensus 2 ~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl 35 (143)
T 1k6k_A 2 LNQELELSLNM------------AFARAREHRHEFMTVEHLLLALL 35 (143)
T ss_dssp BCHHHHHHHHH------------HHHHHHHHTBSEECHHHHHHHHT
T ss_pred CCHHHHHHHHH------------HHHHHHHcCCCCcCHHHHHHHHH
Confidence 45666666655 77888888999999999999983
No 64
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=60.70 E-value=8.3 Score=27.57 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCC
Q 027605 63 ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE 97 (221)
Q Consensus 63 I~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~ 97 (221)
|.-|..+|.-.|.++.+..|+.+|+..||+++-..
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcC
Confidence 56666677778888889999999999999976543
No 65
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=60.58 E-value=7 Score=27.18 Aligned_cols=33 Identities=27% Similarity=0.187 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhcCCCccCcchHHHHHhhcC
Q 027605 63 ISFITGEASDKCQREKRKTINGDDLLWAMTTLG 95 (221)
Q Consensus 63 I~yLTseAneic~~ekRKTIsaeDVl~ALe~LG 95 (221)
|.-|..+|...|..+.+..|+.+|+..||++.-
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 444566777888888899999999999999764
No 66
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=59.16 E-value=20 Score=30.22 Aligned_cols=66 Identities=9% Similarity=-0.008 Sum_probs=45.7
Q ss_pred CchhHHHHHHhhcCC---CCcccCHHHHHHHHHHHH---H---HHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcC
Q 027605 28 LPIANVSRIMKKSLP---ANAKISKEAKETVQECVS---E---FISFITGEASDKCQREKRKTINGDDLLWAMTTLG 95 (221)
Q Consensus 28 LPrAtV~RImK~aLP---~n~kISkDAk~al~kcat---e---FI~yLTseAneic~~ekRKTIsaeDVl~ALe~LG 95 (221)
|....+..|++..+. ....++.++...+.+.+. = .+.-+...|...|. ++.+|+.+||..+++++.
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 456677777776432 146799999988888776 1 23334445556665 678999999999999874
No 67
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=58.35 E-value=17 Score=27.72 Aligned_cols=38 Identities=11% Similarity=0.248 Sum_probs=32.3
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcC
Q 027605 46 KISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLG 95 (221)
Q Consensus 46 kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LG 95 (221)
+++..++.+|.. |.+.|...+...|.++|++.||=+-+
T Consensus 7 ~~T~~a~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~~ 44 (145)
T 3fes_A 7 RFTQRAKKAIDL------------AFESAKSLGHNIVGSEHILLGLLREE 44 (145)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 578888888876 77889999999999999999986544
No 68
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=57.17 E-value=9.4 Score=27.42 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhcCCCccCcchHHHHHhhc
Q 027605 63 ISFITGEASDKCQREKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 63 I~yLTseAneic~~ekRKTIsaeDVl~ALe~L 94 (221)
|.-|..+|.-.|.++.+..|+.+|+..||++.
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33455677777888889999999999999864
No 69
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=56.06 E-value=15 Score=27.58 Aligned_cols=63 Identities=8% Similarity=0.086 Sum_probs=40.8
Q ss_pred CchhHHHHHHhhcCCC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHh
Q 027605 28 LPIANVSRIMKKSLPA-NAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMT 92 (221)
Q Consensus 28 LPrAtV~RImK~aLP~-n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe 92 (221)
|+...+.++++..+.. +..++.++...|.+.+.--+..+-......+... ++|+.+||..++.
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4556666666655421 4568999888888776544444444444444433 7899999998875
No 70
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=55.48 E-value=33 Score=29.38 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=44.8
Q ss_pred hHHHHHHhhcCC-CCcccCHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCCc
Q 027605 31 ANVSRIMKKSLP-ANAKISKEAKETVQECVS---EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEN 98 (221)
Q Consensus 31 AtV~RImK~aLP-~n~kISkDAk~al~kcat---eFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~~ 98 (221)
..+..|++.... .++.++.|+...|.+.+. -.+.-+...+.+.|...++..|+.++|..||+.++++.
T Consensus 183 ~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~~ 254 (334)
T 1in4_A 183 KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDD 254 (334)
T ss_dssp HHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCc
Confidence 345555543321 146788888888876532 22333344566677777888999999999999988754
No 71
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=51.95 E-value=35 Score=32.57 Aligned_cols=48 Identities=27% Similarity=0.422 Sum_probs=31.8
Q ss_pred HhcCCCccCcchHHHHHhhcCCC-cchHHHHHH------HHHHHHHHhhhhhhhh
Q 027605 75 QREKRKTINGDDLLWAMTTLGFE-NYVSPLKIY------LNKYRETEGEKNSMAR 122 (221)
Q Consensus 75 ~~ekRKTIsaeDVl~ALe~LGF~-~yv~~Lk~~------Le~yRe~~k~Kks~~k 122 (221)
+++++++|+++++++.-+..||+ ++...+-+. .+.|.+..++.+..+|
T Consensus 372 ~~~~~~~l~G~~af~LyDTyGfP~dLt~eia~e~g~~vD~~gF~~~m~~q~~rar 426 (465)
T 1yfs_A 372 LEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERAR 426 (465)
T ss_dssp HHTTCCEECHHHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHTTT
T ss_pred HhcCCCcCCHHHHHhhhhccCCCHHHHHHHHHHcCCeeCHHHHHHHHHHHHHHHH
Confidence 34466789999999999999997 444444322 3456666555554444
No 72
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=50.99 E-value=21 Score=27.15 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=32.7
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcC
Q 027605 44 NAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLG 95 (221)
Q Consensus 44 n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LG 95 (221)
...+|.++..+|.+ |...|+..+...|+.+||+-||=+-+
T Consensus 79 ~~~~s~~~~~vl~~------------A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 79 DIVLSPRSKQILEL------------SGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp CCEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 35688888888876 66778888999999999999986554
No 73
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=47.65 E-value=73 Score=22.62 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=44.6
Q ss_pred ccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHH----------HHHHHHHHH------------HHHHHHHhcCCCcc
Q 027605 25 DRFLPIANVSRIMKKSLPANAKISKEAKETVQECV----------SEFISFITG------------EASDKCQREKRKTI 82 (221)
Q Consensus 25 D~~LPrAtV~RImK~aLP~n~kISkDAk~al~kca----------teFI~yLTs------------eAneic~~ekRKTI 82 (221)
+-.|+..-+.++++.. +..++.+....+-+.+ .+|+.++.. .+....-.++.-.|
T Consensus 37 ~G~i~~~e~~~~l~~~---~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i 113 (161)
T 3fwb_A 37 DGFLDYHELKVAMKAL---GFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKI 113 (161)
T ss_dssp SSEECHHHHHHHHHHT---TCCCCHHHHHHHHHHHCTTSSSCEEHHHHHHHHHHHHHTCCHHHHHHHHHHHHCTTCSSEE
T ss_pred CCcCcHHHHHHHHHHc---CCCCCHHHHHHHHHHhCcCCCCeEeHHHHHHHHHHHHhcCCcHHHHHHHHHHHcCCCCCeE
Confidence 3346666666666653 2344444444333332 566666653 22233334566689
Q ss_pred CcchHHHHHhhcCCCcchHHHHHHH
Q 027605 83 NGDDLLWAMTTLGFENYVSPLKIYL 107 (221)
Q Consensus 83 saeDVl~ALe~LGF~~yv~~Lk~~L 107 (221)
+.+++..+|+.+|..--.+.++..+
T Consensus 114 ~~~el~~~l~~~~~~~~~~~~~~~~ 138 (161)
T 3fwb_A 114 SIKNLRRVAKELGETLTDEELRAMI 138 (161)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred eHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 9999999998888654334444443
No 74
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=46.81 E-value=48 Score=25.02 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=32.1
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcC
Q 027605 45 AKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLG 95 (221)
Q Consensus 45 ~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LG 95 (221)
..+|.++..+|.+ |...|+..+...|+.+||+-||-+-+
T Consensus 80 ~~~s~~~~~vL~~------------A~~~a~~~~~~~i~~eHlLlall~~~ 118 (146)
T 3fh2_A 80 IPFTPRAKKVLEL------------SLREGLQMGHKYIGTEFLLLGLIREG 118 (146)
T ss_dssp CCBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHH------------HHHHHHHcCCCcCcHHHHHHHHHhCC
Confidence 5688888888877 66778888999999999999986543
No 75
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=46.47 E-value=36 Score=26.36 Aligned_cols=81 Identities=10% Similarity=0.160 Sum_probs=42.4
Q ss_pred ccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCCcchHHH
Q 027605 25 DRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEF-ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPL 103 (221)
Q Consensus 25 D~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateF-I~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~~yv~~L 103 (221)
+..|....+.|+-+-. ...++.+.+...|.+..+.- +..| .++....-.++.-+|+.+++..+|+.+|+.--...+
T Consensus 19 ~~~l~~~~~~~l~~f~--~~~~lk~~~l~~i~~~l~~~e~~~l-~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~ 95 (197)
T 3pm8_A 19 HVELSSTLLKNLKNFK--KENELKKIALTIIAKHLCDVEINNL-RNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDI 95 (197)
T ss_dssp SCCCCTTHHHHHHHTT--TSCHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHCTTCSSEECHHHHHHHHHHHC----CHHH
T ss_pred CCCCCHHHHHHHHHHH--HccHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHH
Confidence 4446667777765533 23445555444443322111 1111 122333445677799999999999999885434444
Q ss_pred HHHHH
Q 027605 104 KIYLN 108 (221)
Q Consensus 104 k~~Le 108 (221)
...++
T Consensus 96 ~~l~~ 100 (197)
T 3pm8_A 96 HQVLR 100 (197)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 76
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=45.86 E-value=46 Score=24.62 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=30.3
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhc
Q 027605 45 AKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 45 ~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~L 94 (221)
..+|..++.+|.+ |...++.-+...|+.+|++-||=+-
T Consensus 78 ~~~s~~~~~~l~~------------A~~~A~~~~~~~i~~ehLLlall~~ 115 (143)
T 1k6k_A 78 TQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFSE 115 (143)
T ss_dssp CEECHHHHHHHHH------------HHHHHHSSSCSCBCHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHhC
Confidence 4577887777765 6777888889999999999999653
No 77
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=45.60 E-value=26 Score=26.33 Aligned_cols=64 Identities=5% Similarity=0.024 Sum_probs=41.6
Q ss_pred CchhHHHHHHhhcCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHh
Q 027605 28 LPIANVSRIMKKSLP-ANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMT 92 (221)
Q Consensus 28 LPrAtV~RImK~aLP-~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe 92 (221)
|+...+..+++..+. .+..++.++...|.+.+.=-..++-......+ ...+++|+.+||-+++.
T Consensus 185 l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~-~~~~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 185 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAMLG 249 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH-TTTTSSBCHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-hccCceecHHHHHHHhC
Confidence 445666666665442 24678999988888877655555554443333 33456899999988863
No 78
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=44.51 E-value=18 Score=29.11 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=30.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcC
Q 027605 46 KISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLG 95 (221)
Q Consensus 46 kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LG 95 (221)
+.+..++.+|+. |.+.|...+...|.++|++.||=+-+
T Consensus 24 kfT~~a~~aL~~------------A~~~A~~~~h~~I~~EHLLlaLL~~~ 61 (171)
T 3zri_A 24 KLNAQSKLALEQ------------AASLCIERQHPEVTLEHYLDVLLDNP 61 (171)
T ss_dssp HBCHHHHHHHHH------------HHHHHHHHTCSEECHHHHHHHHTTCT
T ss_pred HcCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHHcc
Confidence 456667766665 77889999999999999999986543
No 79
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=42.61 E-value=76 Score=21.58 Aligned_cols=71 Identities=11% Similarity=0.181 Sum_probs=44.7
Q ss_pred CchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCCccCcchHHHHHhhc---C
Q 027605 28 LPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFIT---------GEASDKCQREKRKTINGDDLLWAMTTL---G 95 (221)
Q Consensus 28 LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLT---------seAneic~~ekRKTIsaeDVl~ALe~L---G 95 (221)
++..-|.++++..=. +..|+-+ +|+.++. ..+....-.++.-.|+.+++..+|..+ |
T Consensus 6 ~s~~ei~~~~~~~d~-~g~i~~~----------eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g 74 (109)
T 5pal_A 6 LKADDINKAISAFKD-PGTFDYK----------RFFHLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHG 74 (109)
T ss_dssp SCHHHHHHHHHHTCS-TTCCCHH----------HHHHHHTCTTCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTC
T ss_pred CCHHHHHHHHHHhCC-CCcCcHH----------HHHHHHhhccCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcC
Confidence 667788888887643 4566643 2333321 234455556777899999999999998 6
Q ss_pred CCcchHHHHHHHHH
Q 027605 96 FENYVSPLKIYLNK 109 (221)
Q Consensus 96 F~~yv~~Lk~~Le~ 109 (221)
..--.+.++..++.
T Consensus 75 ~~~~~~~~~~~~~~ 88 (109)
T 5pal_A 75 RDLNDTETKALLAA 88 (109)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 65444455544443
No 80
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=41.43 E-value=53 Score=26.94 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=51.0
Q ss_pred CchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchH
Q 027605 28 LPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDL 87 (221)
Q Consensus 28 LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDV 87 (221)
+|.+-+.|+++.+. +.-|.|+-..-+.+.+..=+.-|.--|.+.|+.++|.+|...|+
T Consensus 3 m~~~~~e~lFR~aa--~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 3 MKVAEFERLFRQAA--GLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp SCHHHHHHHHHHHH--CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred CCHHHHHHHHHHHh--ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 57788999999996 57788888888888888888888889999999999999999885
No 81
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=40.01 E-value=26 Score=28.47 Aligned_cols=33 Identities=27% Similarity=0.244 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhcCCCccCcchHHHHHhhc
Q 027605 62 FISFITGEASDKCQREKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 62 FI~yLTseAneic~~ekRKTIsaeDVl~ALe~L 94 (221)
-|.-|..+|...|..+++.+|+.+||..|++++
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 456677788888888999999999999998755
No 82
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=39.34 E-value=43 Score=25.63 Aligned_cols=60 Identities=0% Similarity=0.036 Sum_probs=34.7
Q ss_pred hHHHHHHhhcCC-CCcccCHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccCcchHHHHHh
Q 027605 31 ANVSRIMKKSLP-ANAKISKEAKETVQECVS----EFISFITGEASDKCQREKRKTINGDDLLWAMT 92 (221)
Q Consensus 31 AtV~RImK~aLP-~n~kISkDAk~al~kcat----eFI~yLTseAneic~~ekRKTIsaeDVl~ALe 92 (221)
..+.++++..+. .+..++.++.+.|.+.+. +.+..|. .+...+..++ ++|+.+||..+|+
T Consensus 177 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~-~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 177 DEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLD-RLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp GGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHH-HHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHH-HHHHHHHHhC-CCCcHHHHHHHhh
Confidence 344444444331 246788898888877654 3333333 3333444344 5699999988875
No 83
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=37.73 E-value=1.1e+02 Score=24.86 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=37.5
Q ss_pred cccCHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcC------------CCccCcchHHHHHhhcCCCcchHHHH
Q 027605 45 AKISKEAKETVQECVSEF----ISFITGEASDKCQREK------------RKTINGDDLLWAMTTLGFENYVSPLK 104 (221)
Q Consensus 45 ~kISkDAk~al~kcateF----I~yLTseAneic~~ek------------RKTIsaeDVl~ALe~LGF~~yv~~Lk 104 (221)
..++.++...|.+.+.-| |..|..+|.-.+.++. ...|+.+|+..|++.+.-.-..+.++
T Consensus 207 ~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~ 282 (297)
T 3b9p_A 207 SPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLN 282 (297)
T ss_dssp CCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHH
Confidence 347788777777655432 3344555554444432 36899999999999876554443333
No 84
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=37.70 E-value=41 Score=22.96 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=26.7
Q ss_pred cCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHH
Q 027605 26 RFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEF 62 (221)
Q Consensus 26 ~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateF 62 (221)
..+.+++|.|++...- ....|+.|.++-|.+++.++
T Consensus 10 aGVS~sTVSrvLng~~-~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 10 AGVSRTTASYVINGKA-KQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp HTSCHHHHHHHHHTCT-TTTTCTTHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHcCCC-CCCCCCHHHHHHHHHHHHHh
Confidence 3578899999998642 12368999988888877665
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=37.65 E-value=1.1e+02 Score=25.65 Aligned_cols=68 Identities=10% Similarity=0.059 Sum_probs=49.5
Q ss_pred CCchhHHHHHHhhc----CCCCcccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcCCCccCcchHHHHHhh
Q 027605 27 FLPIANVSRIMKKS----LPANAKISKEAKETVQECVS---------EFISFITGEASDKCQREKRKTINGDDLLWAMTT 93 (221)
Q Consensus 27 ~LPrAtV~RImK~a----LP~n~kISkDAk~al~kcat---------eFI~yLTseAneic~~ekRKTIsaeDVl~ALe~ 93 (221)
.|+..-+..|++.. .+ ...++.++...+.+.+. -++..|...|...+...++.+|+.+||..++.+
T Consensus 214 ~l~~~e~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 214 AYKSRELYTILEQRAELGLR-DTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 292 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHBC-TTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 35556677776543 32 24588998888888776 366677777778888888899999999999987
Q ss_pred cC
Q 027605 94 LG 95 (221)
Q Consensus 94 LG 95 (221)
+.
T Consensus 293 ~~ 294 (412)
T 1w5s_A 293 NE 294 (412)
T ss_dssp C-
T ss_pred Hh
Confidence 64
No 86
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=37.09 E-value=18 Score=34.33 Aligned_cols=57 Identities=16% Similarity=0.255 Sum_probs=41.5
Q ss_pred hhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC--cchHHHHHhhc
Q 027605 38 KKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTIN--GDDLLWAMTTL 94 (221)
Q Consensus 38 K~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIs--aeDVl~ALe~L 94 (221)
|+++.+.--|-+|.+.+|++||...=.||.......-..++++++. -.+|..+|..+
T Consensus 427 Ke~i~~~~ei~~ei~~a~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (530)
T 2zbk_B 427 KESIAEVENIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKLLAYLKYIPEVSRSLATF 485 (530)
T ss_dssp CSCBCCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555444568899999999999999999998766655555555554 35677777753
No 87
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=35.86 E-value=22 Score=24.80 Aligned_cols=23 Identities=4% Similarity=-0.097 Sum_probs=19.2
Q ss_pred cCcchHHHHHhhcCCCcchHHHH
Q 027605 82 INGDDLLWAMTTLGFENYVSPLK 104 (221)
Q Consensus 82 IsaeDVl~ALe~LGF~~yv~~Lk 104 (221)
=+++||..-|+.+||++|++...
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~F~ 27 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDRFE 27 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHH
Confidence 36889999999999998887654
No 88
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=34.46 E-value=1.7e+02 Score=25.31 Aligned_cols=69 Identities=10% Similarity=0.081 Sum_probs=43.8
Q ss_pred chhHHHHHHhhcCCC-CcccCHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc------------CCCccCcchHHHHH
Q 027605 29 PIANVSRIMKKSLPA-NAKISKEAKETVQECVSE----FISFITGEASDKCQRE------------KRKTINGDDLLWAM 91 (221)
Q Consensus 29 PrAtV~RImK~aLP~-n~kISkDAk~al~kcate----FI~yLTseAneic~~e------------kRKTIsaeDVl~AL 91 (221)
+......|++..+.. +..++.+....|.+.+.- -|..|..+|...+.++ ....|+.+|+..+|
T Consensus 283 ~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al 362 (389)
T 3vfd_A 283 NEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESL 362 (389)
T ss_dssp CHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHH
Confidence 334445555544432 356888888877776543 4455555665555544 45689999999999
Q ss_pred hhcCCC
Q 027605 92 TTLGFE 97 (221)
Q Consensus 92 e~LGF~ 97 (221)
+...-.
T Consensus 363 ~~~~~s 368 (389)
T 3vfd_A 363 KKIKRS 368 (389)
T ss_dssp HHCCCS
T ss_pred HHcCCC
Confidence 976543
No 89
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=34.31 E-value=52 Score=27.62 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=54.8
Q ss_pred cccc--CCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchH
Q 027605 23 EQDR--FLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDL 87 (221)
Q Consensus 23 eeD~--~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDV 87 (221)
+++. -+|.+-+.|+.+.+. +.-|.|+-..-+.+.+..=+.-|.--|.+.|+.++|.+|...|+
T Consensus 20 ~~~Mm~vmg~~kferlFR~aa--gLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 20 IETMLRPKGFDKLDHYFRTEL--DIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp -CCTTSCTTHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred HHHHHhcCChHHHHHHHHHHh--ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 4455 789999999999996 57888998888999998888888888999999999999999885
No 90
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=33.61 E-value=1.2e+02 Score=21.01 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=27.3
Q ss_pred HHHHHhcCCCccCcchHHHHHhhcCCCcchHHHHHHHHHH
Q 027605 71 SDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKY 110 (221)
Q Consensus 71 neic~~ekRKTIsaeDVl~ALe~LGF~~yv~~Lk~~Le~y 110 (221)
....-.++.-.|+.+++..+|..+|..-=...++..+..+
T Consensus 90 F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (147)
T 4ds7_A 90 FKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREV 129 (147)
T ss_dssp HHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 3444456777899999999999998654444555555544
No 91
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=32.39 E-value=1e+02 Score=26.49 Aligned_cols=51 Identities=22% Similarity=0.124 Sum_probs=32.9
Q ss_pred cccCHHHHHHHHHHHH----HHHHHHHHHHHHHHHh------------cCCCccCcchHHHHHhhcC
Q 027605 45 AKISKEAKETVQECVS----EFISFITGEASDKCQR------------EKRKTINGDDLLWAMTTLG 95 (221)
Q Consensus 45 ~kISkDAk~al~kcat----eFI~yLTseAneic~~------------ekRKTIsaeDVl~ALe~LG 95 (221)
..++++....|.+.+. .-|..|..+|.-.+.+ ...+.|+.+|+..||++..
T Consensus 269 ~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 335 (357)
T 3d8b_A 269 CCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVR 335 (357)
T ss_dssp BCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHG
T ss_pred CCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcC
Confidence 4577887777776543 2345555555544443 3447899999999998764
No 92
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=32.18 E-value=56 Score=24.34 Aligned_cols=38 Identities=11% Similarity=0.227 Sum_probs=28.9
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhc
Q 027605 45 AKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 45 ~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~L 94 (221)
..+|.++..+|.. |...|..-+...|+.+|++.||=+-
T Consensus 78 ~~~s~~~~~vL~~------------A~~~A~~~~~~~i~~ehlLlall~~ 115 (150)
T 2y1q_A 78 IHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIRE 115 (150)
T ss_dssp CEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHhC
Confidence 4567776666655 6677777788999999999998643
No 93
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=32.00 E-value=27 Score=24.58 Aligned_cols=24 Identities=8% Similarity=0.111 Sum_probs=20.2
Q ss_pred ccCcchHHHHHhhcCCCcchHHHH
Q 027605 81 TINGDDLLWAMTTLGFENYVSPLK 104 (221)
Q Consensus 81 TIsaeDVl~ALe~LGF~~yv~~Lk 104 (221)
.=+++||..-|+.+||+.|++...
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F~ 32 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIFT 32 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHHH
Confidence 457899999999999999987654
No 94
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=31.46 E-value=57 Score=26.13 Aligned_cols=39 Identities=18% Similarity=0.062 Sum_probs=32.5
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCccCcchHHHHHhhc
Q 027605 44 NAKISKEAKETVQECVSEFISFITGEASDKCQ-REKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 44 n~kISkDAk~al~kcateFI~yLTseAneic~-~ekRKTIsaeDVl~ALe~L 94 (221)
...+|.+++.+|++ |...|+ +-+...|+.+|||-||=+-
T Consensus 96 ~~~~S~~l~~vL~~------------A~~~A~l~~gd~~I~teHLLLALl~~ 135 (171)
T 3zri_A 96 YPAFSPLLVELLQE------------AWLLSSTELEQAELRSGAIFLAALTR 135 (171)
T ss_dssp CCEECHHHHHHHHH------------HHHHHHTTTCCSSBCHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHH------------HHHHHHHHcCCCEEcHHHHHHHHHhC
Confidence 35689998888887 778888 8899999999999998543
No 95
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=30.92 E-value=51 Score=26.44 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCC
Q 027605 63 ISFITGEASDKCQREKRKTINGDDLLWAMTTLGF 96 (221)
Q Consensus 63 I~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF 96 (221)
|.-+..+|...|...++++|+.+||..|++++-.
T Consensus 221 l~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 221 LANLVNEAALFAARGNKRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHhc
Confidence 4445567777888888999999999999987643
No 96
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.09 E-value=30 Score=31.96 Aligned_cols=31 Identities=35% Similarity=0.281 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhcCCCccCcchHHHHHhh
Q 027605 63 ISFITGEASDKCQREKRKTINGDDLLWAMTT 93 (221)
Q Consensus 63 I~yLTseAneic~~ekRKTIsaeDVl~ALe~ 93 (221)
|.-|..+|.-.|.+++|..|+.+|+..|+++
T Consensus 383 i~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 383 IAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 6677778888888999999999999999874
No 97
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=30.01 E-value=1.3e+02 Score=20.34 Aligned_cols=28 Identities=11% Similarity=-0.019 Sum_probs=21.9
Q ss_pred HHHHHHhcCCCccCcchHHHHHhhcCCC
Q 027605 70 ASDKCQREKRKTINGDDLLWAMTTLGFE 97 (221)
Q Consensus 70 Aneic~~ekRKTIsaeDVl~ALe~LGF~ 97 (221)
+....-.++.-.|+.+++..+|+.+|+.
T Consensus 29 ~F~~~D~d~~G~i~~~el~~~l~~~g~~ 56 (105)
T 1wlz_A 29 EFENFDTMKTNTISREEFRAICNRRVQI 56 (105)
T ss_dssp HHHHHCTTCSSCBCHHHHHHHHHHHTCC
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 4455556677889999999999999875
No 98
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=29.99 E-value=59 Score=26.65 Aligned_cols=70 Identities=14% Similarity=0.172 Sum_probs=44.6
Q ss_pred CchhHHHHHHhhcCC-CCcccCHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCC
Q 027605 28 LPIANVSRIMKKSLP-ANAKISKEAKETVQECVSEFI---SFITGEASDKCQREKRKTINGDDLLWAMTTLGFE 97 (221)
Q Consensus 28 LPrAtV~RImK~aLP-~n~kISkDAk~al~kcateFI---~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~ 97 (221)
+|..-+..+++..+. .+..++.++...|.+.+.-.+ .-+...+...|...++..|+.+||..+++.+..+
T Consensus 168 ~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 241 (324)
T 1hqc_A 168 YTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD 241 (324)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccc
Confidence 455556666655442 146799999988888752222 2222333344445567789999999999887654
No 99
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=29.85 E-value=1.3e+02 Score=20.33 Aligned_cols=80 Identities=16% Similarity=0.056 Sum_probs=43.3
Q ss_pred CCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhc---CCCcchHHH
Q 027605 27 FLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTL---GFENYVSPL 103 (221)
Q Consensus 27 ~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~L---GF~~yv~~L 103 (221)
.+...-|.+|++..= .+..|+-+--..+......-... ...+-...-.++.-+|+.+++..+|..+ |..--...+
T Consensus 6 ~~~~~e~~~~~~~~d-~~g~i~~~eF~~~~~~~~~~~~~-l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~ 83 (109)
T 1bu3_A 6 ILADADVAAALKACE-AADSFNYKAFFAKVGLTAKSADD-IKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAET 83 (109)
T ss_dssp SSCHHHHHHHHHHTC-STTCCCHHHHHHHHTGGGSCHHH-HHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHH
T ss_pred cCCHHHHHHHHHHhC-CCCcCcHHHHHHHHHcChhhHHH-HHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHH
Confidence 466777888888754 35566654211111000000000 1234445555677789999999999998 544333444
Q ss_pred HHHHH
Q 027605 104 KIYLN 108 (221)
Q Consensus 104 k~~Le 108 (221)
+..++
T Consensus 84 ~~~~~ 88 (109)
T 1bu3_A 84 KAFLK 88 (109)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 100
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.58 E-value=42 Score=31.11 Aligned_cols=32 Identities=34% Similarity=0.352 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhcCCCccCcchHHHHHhhc
Q 027605 63 ISFITGEASDKCQREKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 63 I~yLTseAneic~~ekRKTIsaeDVl~ALe~L 94 (221)
|.-|..+|.-.|.+++|..|+.+|+..||++.
T Consensus 391 i~~l~~eA~~~air~~~~~i~~~d~~~Al~~v 422 (437)
T 4b4t_L 391 IRNCATEAGFFAIRDDRDHINPDDLMKAVRKV 422 (437)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 56667788888888999999999999998753
No 101
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.54 E-value=41 Score=31.52 Aligned_cols=67 Identities=19% Similarity=0.154 Sum_probs=41.9
Q ss_pred cCCchhH-HHHHHhhcCCCCcccCHHH-HHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccCcchHHHHHhh
Q 027605 26 RFLPIAN-VSRIMKKSLPANAKISKEA-KETVQECVS----EFISFITGEASDKCQREKRKTINGDDLLWAMTT 93 (221)
Q Consensus 26 ~~LPrAt-V~RImK~aLP~n~kISkDA-k~al~kcat----eFI~yLTseAneic~~ekRKTIsaeDVl~ALe~ 93 (221)
+.||-.. -..|++-.+. .+.++.|. .+.|.+.+. -=|.-|..+|.-.|.+++|..|+.+|+..|+++
T Consensus 350 v~lPd~~~R~~Il~~~l~-~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 350 FENPDLSTKKKILGIHTS-KMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp CCCCCHHHHHHHHHHHHT-TSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHhc-CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 4566332 2344444442 34455442 334444332 236667778888888999999999999999875
No 102
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=29.10 E-value=1.4e+02 Score=21.20 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=22.5
Q ss_pred HHHHhcCCCccCcchHHHHHhhcCCCcchHHHHHHH
Q 027605 72 DKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYL 107 (221)
Q Consensus 72 eic~~ekRKTIsaeDVl~ALe~LGF~~yv~~Lk~~L 107 (221)
...-.++.-.|+.+++..+|..+|..-=...+...+
T Consensus 92 ~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~ 127 (153)
T 2ovk_B 92 SMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVW 127 (153)
T ss_dssp HTTCSSCSSCCCHHHHHHHHHHSSSCCCHHHHHHHH
T ss_pred HHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 333345667899999999998888643333344333
No 103
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=29.08 E-value=70 Score=29.14 Aligned_cols=67 Identities=9% Similarity=0.240 Sum_probs=44.1
Q ss_pred CchhHHHHHHhhcCC--------CCcccCHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc--CCCccCcchHHHHHhh
Q 027605 28 LPIANVSRIMKKSLP--------ANAKISKEAKETVQECVS----EFISFITGEASDKCQRE--KRKTINGDDLLWAMTT 93 (221)
Q Consensus 28 LPrAtV~RImK~aLP--------~n~kISkDAk~al~kcat----eFI~yLTseAneic~~e--kRKTIsaeDVl~ALe~ 93 (221)
|+...+..|++..+. ....|+.++.+.|.+.+. +.++.|- .+...|... ++++|+.+||..++..
T Consensus 165 l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le-~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 165 LSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE-MMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH-HHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH-HHHHhcccccCCCCccCHHHHHHHHhh
Confidence 566667777766553 246799999999988753 3333333 233344322 5678999999999986
Q ss_pred cC
Q 027605 94 LG 95 (221)
Q Consensus 94 LG 95 (221)
.-
T Consensus 244 ~~ 245 (447)
T 3pvs_A 244 RS 245 (447)
T ss_dssp CC
T ss_pred hh
Confidence 53
No 104
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=28.84 E-value=65 Score=23.84 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=26.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHh
Q 027605 46 KISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMT 92 (221)
Q Consensus 46 kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe 92 (221)
.+|.++..+|.+ |...++..+...|+.+|++-||=
T Consensus 82 ~~s~~~~~vl~~------------A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 82 QPSQDLVRVLNL------------CDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHHTCSSBCHHHHHHHHH
T ss_pred CcCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHH
Confidence 456666665554 66667777889999999999987
No 105
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=28.80 E-value=2.1e+02 Score=22.44 Aligned_cols=72 Identities=21% Similarity=0.155 Sum_probs=41.6
Q ss_pred CCchhHHHHHHhhcC-CCCcccCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhcCCCccCcchHHHHHhhcCCCcch
Q 027605 27 FLPIANVSRIMKKSL-PANAKISKEAKETVQECVSEFISFIT-----GEASDKCQREKRKTINGDDLLWAMTTLGFENYV 100 (221)
Q Consensus 27 ~LPrAtV~RImK~aL-P~n~kISkDAk~al~kcateFI~yLT-----seAneic~~ekRKTIsaeDVl~ALe~LGF~~yv 100 (221)
.++...+.++++..= ..+..|+-+ +|+.++. ..+....-.++.-+|+.+++..+|..+|..-=.
T Consensus 83 ~~~~~~~~~l~~~~D~d~dg~I~~~----------EF~~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~ 152 (220)
T 3sjs_A 83 RLSPQTALRMMRIFDTDFNGHISFY----------EFMAMYKFMELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQ 152 (220)
T ss_dssp CCCHHHHHHHHHHHCTTCSSCBCHH----------HHHHHHHHHHHHHHHHHHHCCSSTTEECHHHHHHHHHHHTCCCCH
T ss_pred CCCHHHHHHHHHHhCCCCCCcCCHH----------HHHHHHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHhCCCCCH
Confidence 355556666665542 223455543 3333332 234455555677889999999999999875433
Q ss_pred HHHHHHHH
Q 027605 101 SPLKIYLN 108 (221)
Q Consensus 101 ~~Lk~~Le 108 (221)
+.++..++
T Consensus 153 ~~~~~l~~ 160 (220)
T 3sjs_A 153 RTSLLLHR 160 (220)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 106
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.29 E-value=42 Score=31.73 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhcCCCccCcchHHHHHhhc
Q 027605 63 ISFITGEASDKCQREKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 63 I~yLTseAneic~~ekRKTIsaeDVl~ALe~L 94 (221)
|.-|..+|.-.|.+++|+.|+.+|++.||++.
T Consensus 419 I~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 419 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 56677788888888999999999999999864
No 107
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.04 E-value=42 Score=31.05 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhcCCCccCcchHHHHHhhc
Q 027605 62 FISFITGEASDKCQREKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 62 FI~yLTseAneic~~ekRKTIsaeDVl~ALe~L 94 (221)
-|.-|..+|.-.|.+++++.|+.+|++.||++.
T Consensus 390 Di~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 390 QLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 356677788888888999999999999999864
No 108
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.94 E-value=47 Score=30.69 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhcCCCccCcchHHHHHhh
Q 027605 62 FISFITGEASDKCQREKRKTINGDDLLWAMTT 93 (221)
Q Consensus 62 FI~yLTseAneic~~ekRKTIsaeDVl~ALe~ 93 (221)
=|.-|..+|.-.|.+++|..|+.+|+..||++
T Consensus 357 Di~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 357 DVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 35667778888888999999999999999875
No 109
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=27.54 E-value=2.1e+02 Score=21.96 Aligned_cols=38 Identities=18% Similarity=0.104 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCccCcchHHHHHhhc----CCCcchHHHHHHH
Q 027605 69 EASDKCQREKRKTINGDDLLWAMTTL----GFENYVSPLKIYL 107 (221)
Q Consensus 69 eAneic~~ekRKTIsaeDVl~ALe~L----GF~~yv~~Lk~~L 107 (221)
+|-+..- ++.-+|+.+++..+|+.+ |+.-=.+.++..+
T Consensus 80 ~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~~~~~~~~~l~ 121 (174)
T 2i7a_A 80 HVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVT 121 (174)
T ss_dssp HHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCCCCHHHHHHHH
T ss_pred HHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCCCCHHHHHHHH
Confidence 4556666 777799999999999999 8753233344433
No 110
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=27.41 E-value=84 Score=28.45 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=31.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcC
Q 027605 46 KISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLG 95 (221)
Q Consensus 46 kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LG 95 (221)
+++..++.+|.. |.+.|...+...|..+|+|.||=+-+
T Consensus 5 ~ft~~a~~al~~------------A~~~A~~~~h~~v~~eHLLlaLl~~~ 42 (468)
T 3pxg_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (468)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhcc
Confidence 577888888776 77889999999999999999987654
No 111
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=27.06 E-value=89 Score=18.94 Aligned_cols=35 Identities=9% Similarity=0.047 Sum_probs=22.1
Q ss_pred HHHhcCCCccCcchHHHHHhhcCCCcchHHHHHHH
Q 027605 73 KCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYL 107 (221)
Q Consensus 73 ic~~ekRKTIsaeDVl~ALe~LGF~~yv~~Lk~~L 107 (221)
..-.++.-.|+.+++..+|+.+|..--...+...+
T Consensus 9 ~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 43 (67)
T 1tiz_A 9 KFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFF 43 (67)
T ss_dssp HHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHH
T ss_pred HHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 33345666788888888888887653333444333
No 112
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=26.66 E-value=28 Score=25.98 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=20.0
Q ss_pred ccCcchHHHHHhhcCCCcchHHH
Q 027605 81 TINGDDLLWAMTTLGFENYVSPL 103 (221)
Q Consensus 81 TIsaeDVl~ALe~LGF~~yv~~L 103 (221)
.-+.+||..-|+++||++|++..
T Consensus 19 ~Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 19 YWSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp SCCTTHHHHHHHHTTCTTTTTTT
T ss_pred hCCHHHHHHHHHHcCCHHHHHHH
Confidence 45899999999999999998664
No 113
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=26.35 E-value=1e+02 Score=24.86 Aligned_cols=52 Identities=8% Similarity=0.054 Sum_probs=31.9
Q ss_pred cccCHHHHHHHHHHHHH------------HHHHHHHH----HHHHHHhcCCC-ccCcchHHHHHhhcCC
Q 027605 45 AKISKEAKETVQECVSE------------FISFITGE----ASDKCQREKRK-TINGDDLLWAMTTLGF 96 (221)
Q Consensus 45 ~kISkDAk~al~kcate------------FI~yLTse----Aneic~~ekRK-TIsaeDVl~ALe~LGF 96 (221)
..+++++.+.|.+.+.. ....|-.. +.+.+..++++ +|+.+||..+++++..
T Consensus 233 ~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 233 IAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVE 301 (310)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSSS
T ss_pred eccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhhh
Confidence 47999999999887732 22222221 11222223332 5999999999987654
No 114
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.06 E-value=54 Score=27.11 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=41.3
Q ss_pred CCchhHHHHHHhhcCC-CCcccCHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcC-CCccCcchHHHHHhhcC
Q 027605 27 FLPIANVSRIMKKSLP-ANAKISKEAKETVQECVS----EFISFITGEASDKCQREK-RKTINGDDLLWAMTTLG 95 (221)
Q Consensus 27 ~LPrAtV~RImK~aLP-~n~kISkDAk~al~kcat----eFI~yLTseAneic~~ek-RKTIsaeDVl~ALe~LG 95 (221)
.++...+.++++..+. .++.|+.++...|.+.+. ..+..|-..+ ..+...+ ++.|+.+||..++..+.
T Consensus 191 ~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~-~~~~~~~~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSAS-KGAQYLGDGKNITSTQVEELAGVVP 264 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTH-HHHHHHCSCCCCCHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-HhcCCCccCccccHHHHHHHhCCCC
Confidence 3455556666655432 356799999998888643 3444443322 2333333 33899999999888543
No 115
>1ygt_A Cytoplasmic dynein light chain; domain swapping, protein transport; 1.70A {Drosophila melanogaster} PDB: 2pg1_E 3fm7_A
Probab=24.91 E-value=79 Score=23.53 Aligned_cols=22 Identities=18% Similarity=0.444 Sum_probs=14.6
Q ss_pred CCccccCCchhHHHHHHhhcCC
Q 027605 21 DKEQDRFLPIANVSRIMKKSLP 42 (221)
Q Consensus 21 ~~eeD~~LPrAtV~RImK~aLP 42 (221)
.+.++..+|...|.+||+++|-
T Consensus 3 ~~~~~~~F~~~~v~~ii~~~l~ 24 (111)
T 1ygt_A 3 DSREESQFIVDDVSKTIKEAIE 24 (111)
T ss_dssp -----CCCCCCHHHHHHHHHHH
T ss_pred CcccCCCCCHHHHHHHHHHHHH
Confidence 3456677999999999998873
No 116
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=24.77 E-value=1.8e+02 Score=20.75 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=14.3
Q ss_pred hcCCCccCcchHHHHHhhcCCCc
Q 027605 76 REKRKTINGDDLLWAMTTLGFEN 98 (221)
Q Consensus 76 ~ekRKTIsaeDVl~ALe~LGF~~ 98 (221)
.++--.|+.+++..+|..+|+.-
T Consensus 39 ~d~~G~i~~~el~~~l~~~~~~~ 61 (169)
T 3qrx_A 39 TDGSGTIDAKELKVAMRALGFEP 61 (169)
T ss_dssp TTCCSEECHHHHHHHHHHTSCCC
T ss_pred CCCCCcCcHHHHHHHHHHcCCCC
Confidence 34455677777777777666643
No 117
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=24.63 E-value=2.2e+02 Score=21.15 Aligned_cols=28 Identities=7% Similarity=0.209 Sum_probs=22.4
Q ss_pred HHHHHHhcCCCccCcchHHHHHhhcCCC
Q 027605 70 ASDKCQREKRKTINGDDLLWAMTTLGFE 97 (221)
Q Consensus 70 Aneic~~ekRKTIsaeDVl~ALe~LGF~ 97 (221)
+...+-.++.-+|+.+++..+|+.+|+.
T Consensus 44 ~F~~~D~d~~G~i~~~El~~~l~~~g~~ 71 (180)
T 3mse_B 44 LFYKLDTNHNGSLSHREIYTVLASVGIK 71 (180)
T ss_dssp HHHHHCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred HHHHhCCCCCCcCCHHHHHHHHHHcCCC
Confidence 3344445677899999999999999986
No 118
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=23.89 E-value=32 Score=27.25 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhcCCCccCcchHHHHHhhc
Q 027605 62 FISFITGEASDKCQREKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 62 FI~yLTseAneic~~ekRKTIsaeDVl~ALe~L 94 (221)
-|.-|..+|...|..+++++|+.+||..|++++
T Consensus 217 ~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 217 DIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 344555566667777788899999999888765
No 119
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=23.76 E-value=1.1e+02 Score=25.52 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=45.9
Q ss_pred chhHHHHHHhhcCC-CCcccCHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCC
Q 027605 29 PIANVSRIMKKSLP-ANAKISKEAKETVQECVSEF---ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE 97 (221)
Q Consensus 29 PrAtV~RImK~aLP-~n~kISkDAk~al~kcateF---I~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~ 97 (221)
+...+..|++..+. .+..++.++...|.+.+.-. +.-+...+...|...++..|+.+||-.+++.+++.
T Consensus 185 ~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 185 KDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp CHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc
Confidence 34555555554432 14668999999888854322 22333345567777788899999999999987765
No 120
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=23.57 E-value=30 Score=23.59 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=18.0
Q ss_pred cCcchHHHHHhhcCCCcchHHH
Q 027605 82 INGDDLLWAMTTLGFENYVSPL 103 (221)
Q Consensus 82 IsaeDVl~ALe~LGF~~yv~~L 103 (221)
=+.+||..-|+.+||++|++..
T Consensus 7 Ws~~~V~~WL~~~gl~~y~~~F 28 (74)
T 2gle_A 7 WSVQQVSHWLVGLSLDQYVSEF 28 (74)
T ss_dssp CCSGGGHHHHHHTTTHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999999988876644
No 121
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=23.52 E-value=62 Score=26.96 Aligned_cols=67 Identities=7% Similarity=0.046 Sum_probs=40.3
Q ss_pred CCchhHHHHHHhhcCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhc
Q 027605 27 FLPIANVSRIMKKSLP-ANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 27 ~LPrAtV~RImK~aLP-~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~L 94 (221)
.++...+..+++..+. .+..++.++...|.+.+.--+..+-....+.+. ....+|+.+||..++...
T Consensus 177 ~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~-~~~~~i~~~~v~~~~~~~ 244 (373)
T 1jr3_A 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLGTL 244 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHH-HTTTCBCHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcCCcccHHHHHHHhCCC
Confidence 3556666777765442 146789999888887654433333333322222 234679999988877644
No 122
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=23.44 E-value=1.3e+02 Score=20.30 Aligned_cols=57 Identities=9% Similarity=0.287 Sum_probs=35.7
Q ss_pred CchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCCccCcchHHHHHhhcC
Q 027605 28 LPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFIT---------GEASDKCQREKRKTINGDDLLWAMTTLG 95 (221)
Q Consensus 28 LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLT---------seAneic~~ekRKTIsaeDVl~ALe~LG 95 (221)
+...-|.++++..= .+..|+-+ +|+.++. ..+....-.++.-.|+.+++..+|..++
T Consensus 7 ~t~~e~~~~~~~~d-~~g~i~~~----------ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~ 72 (110)
T 1pva_A 7 LKADDIKKALDAVK-AEGSFNHK----------KFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFA 72 (110)
T ss_dssp SCHHHHHHHHHHTC-STTCCCHH----------HHHHHHTCTTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTC
T ss_pred CCHHHHHHHHHhcC-CCCcCcHH----------HHHHHHccCcchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHh
Confidence 55667777777643 34455543 2222221 2344555567778999999999999993
No 123
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=22.81 E-value=1.2e+02 Score=20.65 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=24.2
Q ss_pred HHHHhcCCCccCcchHHHHHhhcCCCcchHHHHHHH
Q 027605 72 DKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYL 107 (221)
Q Consensus 72 eic~~ekRKTIsaeDVl~ALe~LGF~~yv~~Lk~~L 107 (221)
...-.++.-.|+.+++..+|+.+|+.-=...++..+
T Consensus 36 ~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~ 71 (94)
T 2kz2_A 36 RVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 71 (94)
T ss_dssp HHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 334456677899999999999998753333444333
No 124
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=22.80 E-value=2e+02 Score=21.40 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=36.3
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCCcchHHHHHHH
Q 027605 41 LPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYL 107 (221)
Q Consensus 41 LP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~~yv~~Lk~~L 107 (221)
.|..+++|++=+.-|.+ .| ...=.++--+|+.+++..+|+.||+.--...+...+
T Consensus 4 ~~~~~~Lt~~qi~elk~---~F---------~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~ 58 (153)
T 3i5g_B 4 APRRVKLSQRQMQELKE---AF---------TMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAML 58 (153)
T ss_dssp ---CTTCCHHHHHHHHH---HH---------HHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred cccccCCCHHHHHHHHH---HH---------HHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHH
Confidence 45667888886555544 23 334456667899999999999999975555554443
No 125
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=22.39 E-value=1.2e+02 Score=21.98 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=20.0
Q ss_pred HHHHHHhcCCCccCcchHHHHHhhcCC
Q 027605 70 ASDKCQREKRKTINGDDLLWAMTTLGF 96 (221)
Q Consensus 70 Aneic~~ekRKTIsaeDVl~ALe~LGF 96 (221)
+....-.++.-.|+.+++..+|..+|+
T Consensus 45 ~F~~~D~d~~G~I~~~el~~~l~~~g~ 71 (135)
T 3h4s_E 45 GFSLLADPERHLITAESLRRNSGILGI 71 (135)
T ss_dssp HHHHHSBTTTTBBCHHHHHHHGGGGTC
T ss_pred HHHHHCCCCCCcCCHHHHHHHHHHhCC
Confidence 344445566778888888888888886
No 126
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=22.20 E-value=3.5e+02 Score=26.02 Aligned_cols=85 Identities=15% Similarity=0.230 Sum_probs=48.5
Q ss_pred ccCCchhHHHHHHhhcCCC-----CcccCHHHHHHHHHHH----------HHHHHHHHH-----HHHHHHHhcCCCccCc
Q 027605 25 DRFLPIANVSRIMKKSLPA-----NAKISKEAKETVQECV----------SEFISFITG-----EASDKCQREKRKTING 84 (221)
Q Consensus 25 D~~LPrAtV~RImK~aLP~-----n~kISkDAk~al~kca----------teFI~yLTs-----eAneic~~ekRKTIsa 84 (221)
|-.|...-+.++++..+.. +..++.+....|.+.. .||+.++.. ++.+..-.++.-+|+.
T Consensus 545 dG~Is~~El~~~L~~l~~~~~~~~g~~~s~~~~~~l~~~~D~d~~G~I~f~EF~~l~~~~~~l~~~F~~~D~d~dG~Is~ 624 (714)
T 3bow_A 545 DAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNS 624 (714)
T ss_dssp GTSBCHHHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHCCSSCSSBCHHHHHHHHHHHHHHHHHHHHHCTTCCSSEEH
T ss_pred CCcCCHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHHHHHhCCCCCCeECH
Confidence 3445666666666664321 3345554444443332 456655543 3334444567778999
Q ss_pred chHHHHHhhcCCCcchHHHHHHHHH
Q 027605 85 DDLLWAMTTLGFENYVSPLKIYLNK 109 (221)
Q Consensus 85 eDVl~ALe~LGF~~yv~~Lk~~Le~ 109 (221)
+++..+|+.+|+.--...++..+..
T Consensus 625 ~El~~~L~~~G~~ls~~~~~~l~~~ 649 (714)
T 3bow_A 625 YEMRKALEEAGFKLPCQLHQVIVAR 649 (714)
T ss_dssp HHHHHHHHHTTEECCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999875433444444443
No 127
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=22.12 E-value=1.6e+02 Score=20.78 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=34.5
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhcCCCcchHHHHHHHHH
Q 027605 42 PANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNK 109 (221)
Q Consensus 42 P~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~LGF~~yv~~Lk~~Le~ 109 (221)
|....++.+-+..+.+ .| ...-.++.-+|+.+++..+|+.+|+.--...+...+..
T Consensus 5 ~~~~~l~~~~~~~l~~---~F---------~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 60 (153)
T 2ovk_B 5 PRRVKLSQRQMQELKE---AF---------TMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKE 60 (153)
T ss_dssp --CTTCCHHHHHHHHH---HH---------HHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHH---HH---------HHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3445566664444433 33 33334566789999999999999986555555555543
No 128
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=22.04 E-value=2.2e+02 Score=20.30 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=24.7
Q ss_pred HHHHhcCCCccCcchHHHHHhhcCCCcchHHHHHHHH
Q 027605 72 DKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLN 108 (221)
Q Consensus 72 eic~~ekRKTIsaeDVl~ALe~LGF~~yv~~Lk~~Le 108 (221)
...-.++.-.|+.+++..+|..+|..--.+.+...++
T Consensus 108 ~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 144 (169)
T 3qrx_A 108 RLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIA 144 (169)
T ss_dssp HHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4444567778999999999999885433344444443
No 129
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=21.95 E-value=31 Score=33.59 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=38.8
Q ss_pred hhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC--cchHHHHHhh
Q 027605 38 KKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTIN--GDDLLWAMTT 93 (221)
Q Consensus 38 K~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIs--aeDVl~ALe~ 93 (221)
|+++-+.--|-+|.+.||++||...=.||.......-++++++++. -.+|..+|..
T Consensus 435 ke~ia~~~ei~~ei~~a~~~~~r~l~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 492 (621)
T 2q2e_B 435 KDAIADIPVIKEEIDLAIKEVARKLKHYLSKQSNLKKRREKEIIITKVLPKLAAKVAH 492 (621)
T ss_dssp SSSBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHTTSSHHHHTTTTTTT
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444333468899999999999999999998776665555555554 2344444443
No 130
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=21.60 E-value=2.4e+02 Score=26.69 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=38.4
Q ss_pred ccCCchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027605 25 DRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQ 75 (221)
Q Consensus 25 D~~LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~ 75 (221)
++++|...|---|... ++.|..+....+.+....-+.-|..++.+.+-
T Consensus 205 ~iE~Pl~~vLa~ME~~---Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~~g 252 (605)
T 2kfn_A 205 NIEMPLVPVLSRIERN---GVKIDPKVLHNHSEELTLRLAELEKKAHEIAG 252 (605)
T ss_dssp HTHHHHHHHHHHHHHH---CBCBCHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHhHHHHHHHHHHHc---CeEeCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567777776666665 68999999999999998888999888888763
No 131
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=21.58 E-value=50 Score=24.00 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=19.7
Q ss_pred ccCcchHHHHHhhc-CCCcchHHHH
Q 027605 81 TINGDDLLWAMTTL-GFENYVSPLK 104 (221)
Q Consensus 81 TIsaeDVl~ALe~L-GF~~yv~~Lk 104 (221)
.=+.+||..-|+.+ ||++|++..+
T Consensus 16 ~Ws~edV~~wL~~l~gl~~y~~~F~ 40 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPGCQDYVDDFI 40 (89)
T ss_dssp GCCHHHHHHHHHTSTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCcChHHHHHHHH
Confidence 45789999999999 9988876544
No 132
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=21.33 E-value=1.6e+02 Score=18.41 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=16.5
Q ss_pred HhcCCCccCcchHHHHHhhcCCC
Q 027605 75 QREKRKTINGDDLLWAMTTLGFE 97 (221)
Q Consensus 75 ~~ekRKTIsaeDVl~ALe~LGF~ 97 (221)
-.++.-.|+.+++..+|+.+|+.
T Consensus 17 D~d~~G~i~~~el~~~l~~~g~~ 39 (77)
T 2joj_A 17 DTNKTGSIDYHELKVAMRALGFD 39 (77)
T ss_dssp CCSSSSEEEHHHHHHHHHHHTCC
T ss_pred CCCCCCCCcHHHHHHHHHHhCCC
Confidence 34555678888888888888764
No 133
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=21.31 E-value=2.5e+02 Score=26.01 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCccCcchHHHHHhhcCCCcchHHHHHHHHHH
Q 027605 70 ASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNKY 110 (221)
Q Consensus 70 Aneic~~ekRKTIsaeDVl~ALe~LGF~~yv~~Lk~~Le~y 110 (221)
+.+..-.++.-+|+.+++..+|+.+|+.-=.+.++..+..|
T Consensus 390 aFk~fD~D~dG~Is~eELr~~L~~lG~~ls~eei~~Lf~~~ 430 (450)
T 3sg6_A 390 AFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 430 (450)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 44445456677899999999999988754444555544443
No 134
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=21.07 E-value=2.3e+02 Score=20.29 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCccCcchHHHHHhhcCCCcchHHHHHHHHH
Q 027605 69 EASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYLNK 109 (221)
Q Consensus 69 eAneic~~ekRKTIsaeDVl~ALe~LGF~~yv~~Lk~~Le~ 109 (221)
.|-...-.++.-+|+.+++..+|..+|..--...++..++.
T Consensus 87 ~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~ 127 (148)
T 2lmt_A 87 EAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIRE 127 (148)
T ss_dssp HHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHH
Confidence 34555556777789999999999999876555555555443
No 135
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=20.97 E-value=1.5e+02 Score=19.95 Aligned_cols=65 Identities=9% Similarity=0.038 Sum_probs=35.6
Q ss_pred CchhHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcchHHHHHhhc
Q 027605 28 LPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTL 94 (221)
Q Consensus 28 LPrAtV~RImK~aLP~n~kISkDAk~al~kcateFI~yLTseAneic~~ekRKTIsaeDVl~ALe~L 94 (221)
+...-|.++++..= .+..|+-+--..+......-.. -...+-...-.++.-.|+.+++..+|..+
T Consensus 6 ~t~~e~~~~~~~~d-~~g~i~~~eF~~~~~~~~~~~~-~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 70 (109)
T 1rwy_A 6 LSAEDIKKAIGAFT-AADSFDHKKFFQMVGLKKKSAD-DVKKVFHILDKDKSGFIEEDELGSILKGF 70 (109)
T ss_dssp SCHHHHHHHHHTTC-STTCCCHHHHHHHHTGGGSCHH-HHHHHHHHHSTTCSSEECHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHcC-CCCcEeHHHHHHHHhcCcchHH-HHHHHHHHHCCCCCCeEcHHHHHHHHHHH
Confidence 45667777777643 3455664421111110000000 01234455556677789999999999998
No 136
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=20.84 E-value=1.7e+02 Score=18.67 Aligned_cols=36 Identities=11% Similarity=0.200 Sum_probs=23.6
Q ss_pred HHHHhcCCCccCcchHHHHHhhcCCCcchHHHHHHH
Q 027605 72 DKCQREKRKTINGDDLLWAMTTLGFENYVSPLKIYL 107 (221)
Q Consensus 72 eic~~ekRKTIsaeDVl~ALe~LGF~~yv~~Lk~~L 107 (221)
...-.++.-.|+.+++..+|+.+|+.-=...+...+
T Consensus 21 ~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 56 (85)
T 2ktg_A 21 QLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIV 56 (85)
T ss_dssp HHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 344456667899999999999888753333444433
No 137
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=20.03 E-value=2.6e+02 Score=26.84 Aligned_cols=66 Identities=9% Similarity=0.107 Sum_probs=32.6
Q ss_pred CCchhHHHHHHhhcC--CCCcccCHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHhcCCCccC
Q 027605 27 FLPIANVSRIMKKSL--PANAKISKEAKETVQECVSEFI---------------------SFITGEASDKCQREKRKTIN 83 (221)
Q Consensus 27 ~LPrAtV~RImK~aL--P~n~kISkDAk~al~kcateFI---------------------~yLTseAneic~~ekRKTIs 83 (221)
.++...+.+.+..+= --...|++++.+.|.+....-= ..|-..|.-.|.-.+|..|+
T Consensus 393 ~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 393 VPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp -CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 355555555444321 0135677777776665433221 11222334445556666666
Q ss_pred cchHHHHHh
Q 027605 84 GDDLLWAMT 92 (221)
Q Consensus 84 aeDVl~ALe 92 (221)
.+||..|++
T Consensus 473 ~eDV~~Ai~ 481 (506)
T 3f8t_A 473 PEDVDIAAE 481 (506)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
Done!