Query 027607
Match_columns 221
No_of_seqs 171 out of 1837
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 12:28:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03071 GTP-binding nuclear p 100.0 3.9E-39 8.4E-44 241.1 24.5 218 1-218 1-218 (219)
2 PTZ00132 GTP-binding nuclear p 100.0 3.9E-37 8.5E-42 230.3 24.7 210 9-218 5-214 (215)
3 KOG0084 GTPase Rab1/YPT1, smal 100.0 2.1E-37 4.5E-42 217.1 17.2 172 11-182 7-182 (205)
4 KOG0092 GTPase Rab5/YPT51 and 100.0 6.1E-36 1.3E-40 208.9 16.9 165 11-175 3-170 (200)
5 smart00176 RAN Ran (Ras-relate 100.0 2.7E-34 5.9E-39 211.3 20.9 187 19-205 1-187 (200)
6 KOG0078 GTP-binding protein SE 100.0 6.3E-35 1.4E-39 207.5 16.5 168 9-176 8-178 (207)
7 KOG0080 GTPase Rab18, small G 100.0 6.1E-35 1.3E-39 197.6 15.2 167 12-178 10-180 (209)
8 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 6.2E-35 1.4E-39 204.0 15.7 167 8-174 17-187 (221)
9 cd04121 Rab40 Rab40 subfamily. 100.0 2.5E-34 5.5E-39 209.9 19.6 165 12-176 5-171 (189)
10 KOG0394 Ras-related GTPase [Ge 100.0 3.2E-34 6.9E-39 198.5 15.9 166 11-176 7-182 (210)
11 KOG0098 GTPase Rab2, small G p 100.0 1.3E-34 2.7E-39 200.9 13.9 165 11-175 4-171 (216)
12 cd04133 Rop_like Rop subfamily 100.0 2E-33 4.3E-38 203.1 19.7 158 14-172 2-173 (176)
13 cd00877 Ran Ran (Ras-related n 100.0 2.7E-33 5.9E-38 201.4 19.9 164 14-177 1-164 (166)
14 cd04120 Rab12 Rab12 subfamily. 100.0 2.2E-33 4.7E-38 206.8 18.8 161 14-174 1-165 (202)
15 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 4.1E-33 8.9E-38 202.6 18.7 160 12-172 4-180 (182)
16 KOG0079 GTP-binding protein H- 100.0 2.3E-34 5E-39 192.2 10.4 162 13-174 8-171 (198)
17 cd01875 RhoG RhoG subfamily. 100.0 8.6E-33 1.9E-37 203.0 19.1 161 12-173 2-178 (191)
18 cd04131 Rnd Rnd subfamily. Th 100.0 1.2E-32 2.6E-37 199.8 18.9 159 13-172 1-176 (178)
19 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.1E-32 2.4E-37 206.3 19.1 168 6-174 6-190 (232)
20 KOG0096 GTPase Ran/TC4/GSP1 (n 100.0 8.1E-33 1.8E-37 192.3 15.0 215 1-218 1-215 (216)
21 cd04122 Rab14 Rab14 subfamily. 100.0 4.4E-32 9.5E-37 195.2 18.8 161 13-173 2-165 (166)
22 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4.5E-32 9.9E-37 200.9 18.8 163 14-176 1-172 (201)
23 cd04128 Spg1 Spg1p. Spg1p (se 100.0 5.4E-32 1.2E-36 197.1 18.7 161 14-175 1-169 (182)
24 cd04124 RabL2 RabL2 subfamily. 100.0 1.4E-31 3E-36 191.6 18.8 159 14-173 1-159 (161)
25 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.3E-31 2.8E-36 193.6 18.2 161 13-174 2-166 (172)
26 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.7E-31 3.8E-36 193.4 18.7 157 14-171 2-174 (175)
27 cd04117 Rab15 Rab15 subfamily. 100.0 1.4E-31 3.1E-36 191.5 17.9 157 14-170 1-160 (161)
28 cd04110 Rab35 Rab35 subfamily. 100.0 2.7E-31 5.7E-36 196.4 19.2 165 12-176 5-171 (199)
29 cd01867 Rab8_Rab10_Rab13_like 100.0 2.5E-31 5.5E-36 191.4 18.6 162 12-173 2-166 (167)
30 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 2.9E-31 6.3E-36 190.9 18.8 160 13-172 2-164 (166)
31 cd01865 Rab3 Rab3 subfamily. 100.0 3.1E-31 6.7E-36 190.6 18.8 159 14-172 2-163 (165)
32 KOG0086 GTPase Rab4, small G p 100.0 2.7E-32 5.8E-37 183.4 11.6 167 12-178 8-177 (214)
33 KOG0093 GTPase Rab3, small G p 100.0 3.2E-32 7E-37 181.7 11.8 167 8-175 17-186 (193)
34 cd04127 Rab27A Rab27a subfamil 100.0 2.8E-31 6.1E-36 193.4 17.9 162 12-173 3-178 (180)
35 cd04119 RJL RJL (RabJ-Like) su 100.0 3.2E-31 7E-36 190.8 18.0 159 14-172 1-167 (168)
36 PTZ00369 Ras-like protein; Pro 100.0 4.3E-31 9.4E-36 193.8 18.6 163 11-174 3-169 (189)
37 cd01871 Rac1_like Rac1-like su 100.0 4.7E-31 1E-35 191.0 18.5 156 14-170 2-173 (174)
38 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.9E-31 4.1E-36 189.0 15.8 168 9-176 10-180 (222)
39 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 6.9E-31 1.5E-35 195.7 19.1 162 13-175 1-179 (222)
40 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 5.9E-31 1.3E-35 189.8 18.2 159 15-173 2-166 (170)
41 cd04136 Rap_like Rap-like subf 100.0 5.2E-31 1.1E-35 188.9 17.7 158 13-171 1-162 (163)
42 PF00071 Ras: Ras family; Int 100.0 7.1E-31 1.5E-35 188.1 18.4 158 15-172 1-161 (162)
43 cd04175 Rap1 Rap1 subgroup. T 100.0 6.9E-31 1.5E-35 188.6 18.1 159 13-172 1-163 (164)
44 cd04106 Rab23_lke Rab23-like s 100.0 7.2E-31 1.6E-35 188.1 17.3 157 14-170 1-161 (162)
45 cd04134 Rho3 Rho3 subfamily. 100.0 1.4E-30 3.1E-35 191.0 19.1 159 14-173 1-175 (189)
46 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.8E-30 4E-35 185.8 18.2 158 13-171 1-161 (162)
47 cd01868 Rab11_like Rab11-like. 100.0 1.9E-30 4.1E-35 186.5 18.3 160 12-171 2-164 (165)
48 cd04176 Rap2 Rap2 subgroup. T 100.0 1.7E-30 3.8E-35 186.3 18.0 158 13-171 1-162 (163)
49 KOG0095 GTPase Rab30, small G 100.0 1.2E-31 2.6E-36 179.6 10.6 164 12-175 6-172 (213)
50 cd01864 Rab19 Rab19 subfamily. 100.0 2.4E-30 5.2E-35 186.0 17.9 159 12-170 2-164 (165)
51 cd04109 Rab28 Rab28 subfamily. 100.0 2.6E-30 5.6E-35 193.3 18.3 161 14-174 1-168 (215)
52 cd04118 Rab24 Rab24 subfamily. 100.0 5.6E-30 1.2E-34 188.6 19.7 162 14-175 1-169 (193)
53 cd04125 RabA_like RabA-like su 100.0 3E-30 6.4E-35 189.3 18.1 162 14-175 1-165 (188)
54 cd01866 Rab2 Rab2 subfamily. 100.0 4.5E-30 9.8E-35 185.1 18.7 162 12-173 3-167 (168)
55 cd04116 Rab9 Rab9 subfamily. 100.0 3.9E-30 8.5E-35 185.7 18.3 159 12-170 4-169 (170)
56 PLN03110 Rab GTPase; Provision 100.0 4.1E-30 8.9E-35 192.1 18.8 172 1-173 1-175 (216)
57 cd04112 Rab26 Rab26 subfamily. 100.0 3.4E-30 7.4E-35 189.4 18.1 162 14-175 1-166 (191)
58 cd04111 Rab39 Rab39 subfamily. 100.0 3.8E-30 8.3E-35 191.5 17.9 164 12-175 1-169 (211)
59 cd04113 Rab4 Rab4 subfamily. 100.0 4.2E-30 9.1E-35 183.9 17.4 157 14-170 1-160 (161)
60 cd04132 Rho4_like Rho4-like su 100.0 3.7E-30 8E-35 188.7 17.4 162 14-176 1-171 (187)
61 cd04140 ARHI_like ARHI subfami 100.0 5.7E-30 1.2E-34 184.0 17.8 155 14-169 2-162 (165)
62 cd04144 Ras2 Ras2 subfamily. 100.0 2.9E-30 6.3E-35 189.6 16.4 161 15-176 1-167 (190)
63 cd04115 Rab33B_Rab33A Rab33B/R 100.0 7.1E-30 1.5E-34 184.4 18.1 159 13-171 2-168 (170)
64 cd04145 M_R_Ras_like M-Ras/R-R 100.0 8.9E-30 1.9E-34 182.7 18.1 159 12-171 1-163 (164)
65 smart00174 RHO Rho (Ras homolo 100.0 1.2E-29 2.6E-34 183.8 18.3 157 16-173 1-173 (174)
66 cd01873 RhoBTB RhoBTB subfamil 100.0 1.2E-29 2.5E-34 186.4 18.3 156 13-170 2-194 (195)
67 cd01860 Rab5_related Rab5-rela 100.0 1.4E-29 3E-34 181.6 18.2 159 13-171 1-162 (163)
68 smart00175 RAB Rab subfamily o 100.0 1.2E-29 2.6E-34 182.0 17.9 160 14-173 1-163 (164)
69 smart00173 RAS Ras subfamily o 100.0 1.3E-29 2.8E-34 181.9 17.6 158 14-172 1-162 (164)
70 PLN03108 Rab family protein; P 100.0 1.3E-29 2.9E-34 188.7 18.1 163 12-174 5-170 (210)
71 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.5E-29 3.1E-34 181.7 17.8 158 14-171 1-163 (164)
72 cd04148 RGK RGK subfamily. Th 100.0 5.8E-29 1.3E-33 186.4 21.0 167 14-182 1-173 (221)
73 cd01862 Rab7 Rab7 subfamily. 100.0 2.4E-29 5.2E-34 181.8 18.2 161 14-174 1-169 (172)
74 cd04126 Rab20 Rab20 subfamily. 100.0 2.8E-29 6.2E-34 187.0 18.1 155 14-173 1-191 (220)
75 cd04142 RRP22 RRP22 subfamily. 100.0 5.2E-29 1.1E-33 183.5 19.2 163 14-176 1-178 (198)
76 cd01861 Rab6 Rab6 subfamily. 100.0 3E-29 6.4E-34 179.5 17.3 157 14-170 1-160 (161)
77 cd04130 Wrch_1 Wrch-1 subfamil 100.0 5.2E-29 1.1E-33 180.3 18.6 155 14-169 1-171 (173)
78 cd01892 Miro2 Miro2 subfamily. 100.0 3.6E-29 7.8E-34 180.4 17.7 161 11-172 2-166 (169)
79 cd01863 Rab18 Rab18 subfamily. 100.0 5.8E-29 1.3E-33 178.0 18.6 157 14-170 1-160 (161)
80 KOG0088 GTPase Rab21, small G 100.0 2.3E-30 5E-35 175.0 10.5 170 6-175 6-178 (218)
81 cd04103 Centaurin_gamma Centau 100.0 3.9E-29 8.4E-34 178.1 17.0 150 14-170 1-157 (158)
82 cd04135 Tc10 TC10 subfamily. 100.0 8.4E-29 1.8E-33 179.4 19.0 157 14-171 1-173 (174)
83 PLN00223 ADP-ribosylation fact 100.0 3.3E-29 7.1E-34 182.4 16.3 160 10-174 14-180 (181)
84 cd04149 Arf6 Arf6 subfamily. 100.0 2.6E-29 5.6E-34 180.9 15.0 156 9-169 5-167 (168)
85 PLN03118 Rab family protein; P 100.0 1.2E-28 2.5E-33 183.9 19.1 165 11-176 12-181 (211)
86 cd04143 Rhes_like Rhes_like su 100.0 9E-29 1.9E-33 187.7 17.6 157 14-171 1-170 (247)
87 cd04146 RERG_RasL11_like RERG/ 100.0 8.5E-29 1.8E-33 177.9 16.3 157 15-172 1-164 (165)
88 cd04158 ARD1 ARD1 subfamily. 100.0 8.3E-29 1.8E-33 178.6 16.2 158 15-177 1-166 (169)
89 cd04177 RSR1 RSR1 subgroup. R 100.0 2.4E-28 5.2E-33 176.1 18.6 159 13-172 1-164 (168)
90 KOG0091 GTPase Rab39, small G 100.0 1.4E-29 3E-34 172.1 11.3 163 11-173 6-174 (213)
91 cd04123 Rab21 Rab21 subfamily. 100.0 2.5E-28 5.4E-33 174.7 18.1 158 14-171 1-161 (162)
92 cd00154 Rab Rab family. Rab G 100.0 1.4E-28 3.1E-33 175.0 16.5 155 14-168 1-158 (159)
93 KOG0081 GTPase Rab27, small G 100.0 7E-31 1.5E-35 177.7 4.0 162 13-174 9-183 (219)
94 cd01870 RhoA_like RhoA-like su 100.0 4.1E-28 9E-33 175.9 18.8 158 13-171 1-174 (175)
95 smart00177 ARF ARF-like small 100.0 1.3E-28 2.9E-33 178.4 16.0 157 10-171 10-173 (175)
96 PTZ00133 ADP-ribosylation fact 100.0 2E-28 4.4E-33 178.4 15.9 161 9-174 13-180 (182)
97 cd04139 RalA_RalB RalA/RalB su 100.0 5E-28 1.1E-32 173.5 17.7 158 14-172 1-162 (164)
98 cd04114 Rab30 Rab30 subfamily. 100.0 1.2E-27 2.6E-32 172.5 19.0 160 12-171 6-168 (169)
99 cd04150 Arf1_5_like Arf1-Arf5- 100.0 2.4E-28 5.3E-33 174.4 14.9 151 14-169 1-158 (159)
100 cd04129 Rho2 Rho2 subfamily. 100.0 2.4E-27 5.2E-32 173.7 19.4 161 13-174 1-175 (187)
101 cd04154 Arl2 Arl2 subfamily. 100.0 4.3E-28 9.3E-33 175.5 15.1 155 10-169 11-172 (173)
102 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 8.6E-28 1.9E-32 175.4 16.2 162 12-174 2-172 (183)
103 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 2.6E-28 5.6E-33 175.1 12.5 149 16-168 2-162 (164)
104 cd00157 Rho Rho (Ras homology) 100.0 3.7E-27 8.1E-32 170.2 18.1 155 14-169 1-170 (171)
105 cd01893 Miro1 Miro1 subfamily. 100.0 4.5E-27 9.7E-32 169.1 17.3 158 14-173 1-165 (166)
106 cd04157 Arl6 Arl6 subfamily. 100.0 1.1E-27 2.4E-32 171.5 13.7 151 15-169 1-161 (162)
107 cd00876 Ras Ras family. The R 100.0 3.5E-27 7.5E-32 168.4 15.9 155 15-170 1-159 (160)
108 cd04147 Ras_dva Ras-dva subfam 100.0 9.9E-27 2.2E-31 171.9 17.6 160 15-175 1-166 (198)
109 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 4.5E-27 9.7E-32 170.3 15.3 154 11-169 13-173 (174)
110 KOG0097 GTPase Rab14, small G 100.0 2.2E-27 4.8E-32 157.9 11.9 165 12-176 10-177 (215)
111 KOG0395 Ras-related GTPase [Ge 100.0 6.3E-27 1.4E-31 171.0 15.2 161 12-173 2-166 (196)
112 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.1E-26 2.3E-31 171.0 15.3 147 14-160 1-178 (202)
113 PF00025 Arf: ADP-ribosylation 99.9 1.9E-26 4.1E-31 166.9 16.3 156 11-171 12-175 (175)
114 cd04137 RheB Rheb (Ras Homolog 99.9 2.5E-26 5.5E-31 167.3 16.8 161 14-175 2-166 (180)
115 cd00879 Sar1 Sar1 subfamily. 99.9 1E-26 2.2E-31 170.8 14.8 155 11-170 17-189 (190)
116 KOG0083 GTPase Rab26/Rab37, sm 99.9 1.5E-28 3.3E-33 161.7 4.2 158 18-175 2-163 (192)
117 cd04161 Arl2l1_Arl13_like Arl2 99.9 9.8E-27 2.1E-31 167.4 13.6 150 15-169 1-166 (167)
118 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.1E-26 2.3E-31 166.1 13.5 151 15-169 1-159 (160)
119 KOG0393 Ras-related small GTPa 99.9 7E-27 1.5E-31 167.2 12.0 164 12-176 3-183 (198)
120 cd04151 Arl1 Arl1 subfamily. 99.9 3.4E-26 7.3E-31 163.2 14.4 150 15-169 1-157 (158)
121 cd04160 Arfrp1 Arfrp1 subfamil 99.9 2.9E-26 6.2E-31 165.0 14.1 151 15-169 1-166 (167)
122 smart00178 SAR Sar1p-like memb 99.9 5E-26 1.1E-30 166.2 15.0 155 11-170 15-183 (184)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.9 8.4E-26 1.8E-30 161.1 15.0 150 15-169 1-157 (158)
124 KOG0073 GTP-binding ADP-ribosy 99.9 1.9E-25 4E-30 152.1 15.0 157 12-173 15-179 (185)
125 PLN00023 GTP-binding protein; 99.9 1.8E-25 3.9E-30 172.1 15.8 140 8-147 16-189 (334)
126 cd01890 LepA LepA subfamily. 99.9 2.4E-25 5.1E-30 162.0 14.3 154 15-171 2-176 (179)
127 cd01897 NOG NOG1 is a nucleola 99.9 9E-25 2E-29 157.3 16.1 156 14-171 1-167 (168)
128 cd04159 Arl10_like Arl10-like 99.9 5.5E-25 1.2E-29 156.6 14.8 150 16-169 2-158 (159)
129 cd04155 Arl3 Arl3 subfamily. 99.9 8.1E-25 1.8E-29 158.3 14.7 155 10-169 11-172 (173)
130 KOG0070 GTP-binding ADP-ribosy 99.9 4.7E-25 1E-29 154.0 12.2 162 7-173 11-179 (181)
131 cd01898 Obg Obg subfamily. Th 99.9 1.1E-24 2.4E-29 157.1 13.6 154 15-170 2-169 (170)
132 KOG4252 GTP-binding protein [S 99.9 1.2E-26 2.6E-31 160.3 1.9 163 12-174 19-183 (246)
133 PRK15494 era GTPase Era; Provi 99.9 7.8E-24 1.7E-28 167.6 18.1 167 10-182 49-226 (339)
134 TIGR00436 era GTP-binding prot 99.9 9.3E-24 2E-28 162.9 15.3 162 15-181 2-173 (270)
135 TIGR00231 small_GTP small GTP- 99.9 6.4E-23 1.4E-27 145.7 16.2 156 13-168 1-160 (161)
136 PTZ00099 rab6; Provisional 99.9 7.8E-23 1.7E-27 147.8 16.3 140 36-175 3-145 (176)
137 cd01878 HflX HflX subfamily. 99.9 2.9E-23 6.3E-28 154.1 13.8 155 10-170 38-203 (204)
138 cd04171 SelB SelB subfamily. 99.9 6.2E-23 1.3E-27 147.0 14.3 153 14-169 1-163 (164)
139 TIGR02528 EutP ethanolamine ut 99.9 2E-23 4.3E-28 146.3 11.3 133 15-168 2-141 (142)
140 PRK12299 obgE GTPase CgtA; Rev 99.9 5.3E-23 1.2E-27 161.9 14.9 159 15-175 160-331 (335)
141 PF02421 FeoB_N: Ferrous iron 99.9 2.1E-23 4.5E-28 145.8 11.0 147 14-167 1-156 (156)
142 cd01891 TypA_BipA TypA (tyrosi 99.9 5.3E-23 1.1E-27 151.5 12.5 146 14-162 3-172 (194)
143 PRK04213 GTP-binding protein; 99.9 6.9E-23 1.5E-27 151.8 12.2 155 11-175 7-195 (201)
144 COG1100 GTPase SAR1 and relate 99.9 4.1E-22 8.8E-27 149.6 16.1 164 12-175 4-188 (219)
145 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2.1E-22 4.5E-27 164.1 15.6 153 11-173 201-361 (442)
146 PRK12298 obgE GTPase CgtA; Rev 99.9 3E-22 6.5E-27 160.6 15.7 162 15-178 161-339 (390)
147 PRK05291 trmE tRNA modificatio 99.9 2.6E-22 5.6E-27 164.4 14.5 150 12-173 214-371 (449)
148 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 4.7E-22 1E-26 143.1 14.0 154 15-171 2-165 (168)
149 cd00882 Ras_like_GTPase Ras-li 99.9 6E-22 1.3E-26 139.5 14.1 150 18-168 1-156 (157)
150 cd04164 trmE TrmE (MnmE, ThdF, 99.9 6.8E-22 1.5E-26 140.5 13.8 147 14-171 2-156 (157)
151 cd01879 FeoB Ferrous iron tran 99.9 8.6E-22 1.9E-26 140.3 14.2 146 18-170 1-155 (158)
152 KOG0075 GTP-binding ADP-ribosy 99.9 1.2E-22 2.5E-27 136.1 8.6 155 12-170 19-180 (186)
153 PF08477 Miro: Miro-like prote 99.9 6E-22 1.3E-26 134.6 11.9 114 15-128 1-119 (119)
154 COG1159 Era GTPase [General fu 99.9 2.9E-21 6.4E-26 145.2 16.4 168 10-181 3-181 (298)
155 KOG0071 GTP-binding ADP-ribosy 99.9 7.3E-22 1.6E-26 131.2 11.5 160 7-171 11-177 (180)
156 TIGR02729 Obg_CgtA Obg family 99.9 8.6E-22 1.9E-26 155.0 13.9 156 14-171 158-328 (329)
157 cd01881 Obg_like The Obg-like 99.9 5.1E-22 1.1E-26 143.9 11.3 151 18-170 1-175 (176)
158 TIGR01393 lepA GTP-binding pro 99.9 1.1E-21 2.4E-26 165.1 14.6 155 14-171 4-179 (595)
159 PRK03003 GTP-binding protein D 99.9 9.4E-22 2E-26 162.6 14.0 153 14-173 39-200 (472)
160 PRK12297 obgE GTPase CgtA; Rev 99.9 2.5E-21 5.5E-26 156.1 15.9 159 15-177 160-332 (424)
161 TIGR03156 GTP_HflX GTP-binding 99.9 1.1E-21 2.4E-26 155.7 13.5 150 13-170 189-350 (351)
162 PRK00089 era GTPase Era; Revie 99.9 4.6E-21 9.9E-26 149.8 16.7 164 11-179 3-178 (292)
163 cd01894 EngA1 EngA1 subfamily. 99.9 1.3E-21 2.9E-26 139.1 12.0 147 17-170 1-156 (157)
164 cd01888 eIF2_gamma eIF2-gamma 99.9 4.1E-21 9E-26 142.2 13.6 111 62-173 83-200 (203)
165 cd00881 GTP_translation_factor 99.9 3.5E-21 7.6E-26 141.0 12.5 154 15-171 1-186 (189)
166 cd01889 SelB_euk SelB subfamil 99.9 4E-21 8.6E-26 141.3 12.5 157 14-173 1-187 (192)
167 PRK03003 GTP-binding protein D 99.9 3.3E-21 7.1E-26 159.4 13.3 159 11-173 209-383 (472)
168 cd01895 EngA2 EngA2 subfamily. 99.9 2.1E-20 4.5E-25 134.9 15.2 154 13-170 2-173 (174)
169 TIGR03594 GTPase_EngA ribosome 99.9 1.6E-20 3.4E-25 154.3 16.2 158 11-172 170-344 (429)
170 cd04163 Era Era subfamily. Er 99.9 2.4E-20 5.2E-25 133.6 15.2 155 12-170 2-167 (168)
171 PRK00454 engB GTP-binding prot 99.9 1.4E-20 3E-25 138.8 14.3 158 9-172 20-194 (196)
172 KOG0076 GTP-binding ADP-ribosy 99.9 5.6E-22 1.2E-26 136.6 6.2 160 10-174 14-189 (197)
173 COG0486 ThdF Predicted GTPase 99.9 1.6E-20 3.4E-25 149.1 15.0 156 11-174 215-378 (454)
174 PRK12296 obgE GTPase CgtA; Rev 99.9 1E-20 2.2E-25 154.5 14.1 160 14-175 160-343 (500)
175 PRK15467 ethanolamine utilizat 99.9 9.7E-21 2.1E-25 134.7 12.4 138 15-171 3-146 (158)
176 TIGR03598 GTPase_YsxC ribosome 99.9 1.2E-20 2.7E-25 137.2 12.3 148 8-161 13-179 (179)
177 PRK09554 feoB ferrous iron tra 99.9 8.1E-20 1.8E-24 157.3 19.0 153 12-171 2-167 (772)
178 KOG1673 Ras GTPases [General f 99.8 1.6E-20 3.5E-25 127.0 11.0 167 9-175 16-189 (205)
179 PRK11058 GTPase HflX; Provisio 99.8 2.3E-20 5E-25 151.4 14.0 156 14-174 198-364 (426)
180 KOG0074 GTP-binding ADP-ribosy 99.8 1.1E-20 2.4E-25 125.8 9.8 157 10-170 14-177 (185)
181 TIGR00487 IF-2 translation ini 99.8 6.7E-20 1.5E-24 153.7 16.8 155 10-169 84-247 (587)
182 PF00009 GTP_EFTU: Elongation 99.8 8.9E-21 1.9E-25 138.9 9.8 157 12-171 2-186 (188)
183 PRK00093 GTP-binding protein D 99.8 3.2E-20 6.8E-25 152.7 13.0 148 14-170 2-160 (435)
184 TIGR03594 GTPase_EngA ribosome 99.8 4.1E-20 8.9E-25 151.9 13.3 152 15-173 1-161 (429)
185 COG1160 Predicted GTPases [Gen 99.8 2.1E-20 4.6E-25 148.0 10.2 153 14-172 4-165 (444)
186 PRK00093 GTP-binding protein D 99.8 2E-19 4.3E-24 148.0 16.3 158 11-172 171-344 (435)
187 cd04105 SR_beta Signal recogni 99.8 1.3E-19 2.8E-24 134.1 13.7 116 15-131 2-123 (203)
188 PRK05433 GTP-binding protein L 99.8 8.7E-20 1.9E-24 153.9 14.3 156 13-171 7-183 (600)
189 KOG3883 Ras family small GTPas 99.8 4.5E-19 9.7E-24 119.8 14.6 164 12-176 8-179 (198)
190 CHL00189 infB translation init 99.8 1.1E-19 2.3E-24 154.8 14.0 157 11-170 242-408 (742)
191 PRK09518 bifunctional cytidyla 99.8 2.1E-19 4.6E-24 155.1 15.0 155 12-173 274-437 (712)
192 PRK05306 infB translation init 99.8 3.6E-19 7.8E-24 152.8 16.1 155 10-169 287-449 (787)
193 KOG0072 GTP-binding ADP-ribosy 99.8 4.9E-20 1.1E-24 123.1 8.0 157 12-173 17-180 (182)
194 TIGR00437 feoB ferrous iron tr 99.8 3.2E-19 6.9E-24 150.3 14.4 145 20-171 1-154 (591)
195 TIGR00475 selB selenocysteine- 99.8 4.9E-19 1.1E-23 149.1 15.0 152 14-173 1-167 (581)
196 PRK12317 elongation factor 1-a 99.8 3.9E-19 8.5E-24 145.5 14.0 155 10-164 3-197 (425)
197 PRK09518 bifunctional cytidyla 99.8 2.6E-19 5.7E-24 154.5 13.5 158 12-173 449-622 (712)
198 KOG1423 Ras-like GTPase ERA [C 99.8 1.1E-18 2.4E-23 131.0 14.8 180 8-190 67-289 (379)
199 cd00880 Era_like Era (E. coli 99.8 5.5E-19 1.2E-23 125.5 12.5 149 18-170 1-162 (163)
200 TIGR00483 EF-1_alpha translati 99.8 1.2E-18 2.5E-23 142.7 14.4 155 10-164 4-199 (426)
201 cd01876 YihA_EngB The YihA (En 99.8 1.6E-18 3.4E-23 124.5 12.9 148 15-170 1-169 (170)
202 PRK10218 GTP-binding protein; 99.8 2.7E-18 5.7E-23 144.4 15.6 156 13-171 5-194 (607)
203 COG1160 Predicted GTPases [Gen 99.8 4.7E-18 1E-22 134.8 15.9 158 12-173 177-352 (444)
204 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.4E-18 3.1E-23 129.2 11.7 146 15-162 1-184 (208)
205 cd01896 DRG The developmentall 99.8 3.5E-18 7.7E-23 128.8 13.6 150 15-171 2-225 (233)
206 TIGR01394 TypA_BipA GTP-bindin 99.8 1.8E-18 3.8E-23 145.6 13.0 154 15-171 3-190 (594)
207 COG0370 FeoB Fe2+ transport sy 99.8 1.6E-17 3.5E-22 137.4 16.0 157 12-175 2-167 (653)
208 PF10662 PduV-EutP: Ethanolami 99.8 4.4E-18 9.6E-23 116.4 10.2 134 15-168 3-142 (143)
209 cd04170 EF-G_bact Elongation f 99.8 6.4E-19 1.4E-23 136.0 6.3 152 15-169 1-170 (268)
210 COG2229 Predicted GTPase [Gene 99.8 2.5E-17 5.4E-22 115.3 13.4 157 9-170 6-176 (187)
211 cd01884 EF_Tu EF-Tu subfamily. 99.8 2.2E-17 4.7E-22 121.1 13.7 147 12-161 1-172 (195)
212 TIGR00491 aIF-2 translation in 99.8 1.5E-17 3.2E-22 139.5 14.0 152 12-169 3-213 (590)
213 TIGR03680 eif2g_arch translati 99.8 1.6E-17 3.4E-22 135.0 13.3 159 11-171 2-195 (406)
214 cd01883 EF1_alpha Eukaryotic e 99.8 6.9E-18 1.5E-22 126.4 9.7 146 15-161 1-194 (219)
215 cd04168 TetM_like Tet(M)-like 99.7 1.4E-17 3E-22 125.8 11.0 117 15-134 1-133 (237)
216 KOG4423 GTP-binding protein-li 99.7 1.3E-19 2.9E-24 126.3 -0.4 164 13-176 25-198 (229)
217 COG0218 Predicted GTPase [Gene 99.7 1.1E-16 2.4E-21 114.5 14.3 155 12-172 23-197 (200)
218 PRK04000 translation initiatio 99.7 4.4E-17 9.6E-22 132.4 13.5 159 10-171 6-200 (411)
219 KOG1707 Predicted Ras related/ 99.7 2.1E-17 4.6E-22 133.7 11.0 191 7-205 3-202 (625)
220 cd04169 RF3 RF3 subfamily. Pe 99.7 5.6E-17 1.2E-21 124.5 12.5 118 14-134 3-140 (267)
221 cd01886 EF-G Elongation factor 99.7 7E-18 1.5E-22 129.6 7.5 115 15-132 1-131 (270)
222 PRK04004 translation initiatio 99.7 1.4E-16 3E-21 134.1 14.7 153 11-169 4-215 (586)
223 PRK10512 selenocysteinyl-tRNA- 99.7 2.3E-16 5E-21 133.5 15.8 154 14-171 1-165 (614)
224 cd04104 p47_IIGP_like p47 (47- 99.7 1.4E-16 3.1E-21 117.4 12.3 158 13-177 1-189 (197)
225 cd04165 GTPBP1_like GTPBP1-lik 99.7 1.5E-16 3.3E-21 119.1 12.6 152 15-169 1-220 (224)
226 COG1084 Predicted GTPase [Gene 99.7 1.9E-16 4.1E-21 120.5 12.8 159 9-170 164-334 (346)
227 KOG1489 Predicted GTP-binding 99.7 2.1E-16 4.5E-21 119.5 12.7 152 15-169 198-364 (366)
228 PRK12736 elongation factor Tu; 99.7 2.6E-16 5.7E-21 127.4 13.8 159 10-171 9-200 (394)
229 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 4.5E-16 9.7E-21 116.1 13.8 160 15-176 1-180 (232)
230 cd04167 Snu114p Snu114p subfam 99.7 1.8E-16 3.9E-21 118.4 11.5 113 15-130 2-136 (213)
231 PRK12735 elongation factor Tu; 99.7 3.8E-16 8.2E-21 126.6 14.2 159 9-170 8-201 (396)
232 TIGR00485 EF-Tu translation el 99.7 3E-16 6.5E-21 127.2 13.0 147 9-158 8-179 (394)
233 KOG0077 Vesicle coat complex C 99.7 6.2E-17 1.4E-21 111.0 7.0 154 12-170 19-191 (193)
234 cd01850 CDC_Septin CDC/Septin. 99.7 1.3E-15 2.8E-20 117.5 13.6 140 12-155 3-185 (276)
235 KOG1191 Mitochondrial GTPase [ 99.7 9.2E-16 2E-20 122.2 12.8 161 12-173 267-451 (531)
236 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 2.2E-15 4.8E-20 111.1 13.9 163 14-178 1-190 (196)
237 cd01899 Ygr210 Ygr210 subfamil 99.7 1.5E-15 3.3E-20 118.8 13.2 165 16-181 1-278 (318)
238 CHL00071 tufA elongation facto 99.7 2.5E-15 5.4E-20 122.3 13.8 147 10-159 9-180 (409)
239 PRK13351 elongation factor G; 99.7 1.6E-15 3.5E-20 131.1 13.0 117 12-131 7-139 (687)
240 COG2262 HflX GTPases [General 99.7 5.2E-15 1.1E-19 116.0 14.4 170 9-184 188-368 (411)
241 cd01885 EF2 EF2 (for archaea a 99.7 4.5E-16 9.6E-21 116.1 8.1 113 15-130 2-138 (222)
242 TIGR02034 CysN sulfate adenyly 99.6 2.2E-15 4.8E-20 122.5 12.5 147 14-162 1-187 (406)
243 PLN00043 elongation factor 1-a 99.6 3E-15 6.5E-20 122.6 13.3 149 10-161 4-202 (447)
244 PRK05124 cysN sulfate adenylyl 99.6 2E-15 4.4E-20 124.6 12.2 152 10-163 24-216 (474)
245 TIGR00484 EF-G translation elo 99.6 4.3E-16 9.3E-21 134.4 8.5 143 12-157 9-171 (689)
246 PF09439 SRPRB: Signal recogni 99.6 6.8E-16 1.5E-20 110.4 7.7 117 12-132 2-127 (181)
247 PF01926 MMR_HSR1: 50S ribosom 99.6 1.9E-15 4E-20 102.1 9.3 107 15-126 1-116 (116)
248 PRK00741 prfC peptide chain re 99.6 2.2E-15 4.8E-20 125.4 11.7 121 11-134 8-148 (526)
249 PTZ00141 elongation factor 1- 99.6 6.3E-15 1.4E-19 120.8 13.7 151 10-162 4-203 (446)
250 PRK00049 elongation factor Tu; 99.6 7.5E-15 1.6E-19 119.0 13.9 157 10-169 9-200 (396)
251 PLN03126 Elongation factor Tu; 99.6 3E-15 6.5E-20 123.2 11.4 148 9-159 77-249 (478)
252 PRK09602 translation-associate 99.6 3.1E-14 6.7E-19 114.7 16.6 164 14-181 2-280 (396)
253 KOG0462 Elongation factor-type 99.6 6.4E-15 1.4E-19 118.7 11.9 159 11-172 58-235 (650)
254 PRK05506 bifunctional sulfate 99.6 7.3E-15 1.6E-19 125.8 13.1 152 9-162 20-211 (632)
255 COG3596 Predicted GTPase [Gene 99.6 4.6E-15 1E-19 110.6 10.2 171 8-181 34-231 (296)
256 TIGR00503 prfC peptide chain r 99.6 7.2E-15 1.6E-19 122.4 11.7 119 11-132 9-147 (527)
257 PLN03127 Elongation factor Tu; 99.6 2.7E-14 5.8E-19 117.0 14.6 158 10-170 58-250 (447)
258 PRK12739 elongation factor G; 99.6 2.4E-14 5.2E-19 123.6 12.6 117 12-131 7-139 (691)
259 COG1163 DRG Predicted GTPase [ 99.6 6.8E-14 1.5E-18 106.5 13.0 152 13-171 63-288 (365)
260 PRK00007 elongation factor G; 99.6 9.5E-15 2E-19 126.1 9.2 150 12-164 9-179 (693)
261 COG0536 Obg Predicted GTPase [ 99.6 5.1E-14 1.1E-18 107.9 11.9 158 16-175 162-336 (369)
262 COG0532 InfB Translation initi 99.6 1.1E-13 2.5E-18 111.9 14.6 153 12-170 4-168 (509)
263 PTZ00327 eukaryotic translatio 99.6 4.8E-14 1E-18 115.4 12.1 161 9-171 30-232 (460)
264 COG0481 LepA Membrane GTPase L 99.6 8.3E-14 1.8E-18 110.8 12.3 156 14-172 10-186 (603)
265 COG5256 TEF1 Translation elong 99.5 9.6E-14 2.1E-18 109.0 11.8 153 10-162 4-201 (428)
266 KOG1145 Mitochondrial translat 99.5 2.3E-13 5E-18 109.9 13.1 156 9-169 149-313 (683)
267 PRK09866 hypothetical protein; 99.5 9.8E-13 2.1E-17 109.3 16.1 107 62-169 230-350 (741)
268 PRK12740 elongation factor G; 99.5 2.4E-13 5.3E-18 117.4 11.8 110 19-131 1-126 (668)
269 KOG0090 Signal recognition par 99.5 2.2E-13 4.8E-18 97.7 8.6 112 14-130 39-158 (238)
270 TIGR00490 aEF-2 translation el 99.5 2.6E-13 5.7E-18 117.6 10.0 117 12-131 18-152 (720)
271 KOG1532 GTPase XAB1, interacts 99.5 1E-12 2.2E-17 98.0 10.7 111 62-175 116-267 (366)
272 cd01853 Toc34_like Toc34-like 99.4 1.4E-12 3.1E-17 98.9 11.3 120 9-130 27-162 (249)
273 TIGR00991 3a0901s02IAP34 GTP-b 99.4 1.3E-12 2.8E-17 100.8 11.0 120 9-130 34-166 (313)
274 COG1121 ZnuC ABC-type Mn/Zn tr 99.4 4.3E-13 9.3E-18 100.4 7.2 69 137-212 122-190 (254)
275 PF04548 AIG1: AIG1 family; I 99.4 2.3E-12 5.1E-17 96.0 11.1 163 14-178 1-192 (212)
276 COG4917 EutP Ethanolamine util 99.4 5.7E-13 1.2E-17 87.5 6.6 136 15-169 3-143 (148)
277 PRK13768 GTPase; Provisional 99.4 1.4E-12 3E-17 99.6 9.4 113 63-175 98-250 (253)
278 cd00066 G-alpha G protein alph 99.4 5.5E-12 1.2E-16 99.4 12.8 72 59-130 158-241 (317)
279 smart00275 G_alpha G protein a 99.4 8.2E-13 1.8E-17 104.9 7.2 71 60-130 182-264 (342)
280 COG0480 FusA Translation elong 99.4 1.2E-12 2.5E-17 111.5 7.8 136 11-149 8-160 (697)
281 COG1217 TypA Predicted membran 99.4 2.4E-11 5.3E-16 96.7 13.7 156 13-171 5-194 (603)
282 cd01882 BMS1 Bms1. Bms1 is an 99.4 2E-11 4.2E-16 91.8 12.1 141 9-160 35-184 (225)
283 TIGR00101 ureG urease accessor 99.3 2.1E-11 4.6E-16 89.8 11.9 98 62-171 92-195 (199)
284 PLN00116 translation elongatio 99.3 2.4E-12 5.2E-17 113.3 8.0 116 12-130 18-163 (843)
285 PRK09435 membrane ATPase/prote 99.3 4.2E-11 9.2E-16 94.1 12.9 102 61-172 148-260 (332)
286 PTZ00416 elongation factor 2; 99.3 4.7E-12 1E-16 111.3 8.2 116 12-130 18-157 (836)
287 KOG1490 GTP-binding protein CR 99.3 6.8E-12 1.5E-16 100.6 8.0 159 9-169 164-338 (620)
288 PF03029 ATP_bind_1: Conserved 99.3 2.9E-12 6.4E-17 96.7 5.7 109 63-171 92-236 (238)
289 PTZ00258 GTP-binding protein; 99.3 7.4E-11 1.6E-15 94.4 13.4 84 11-96 19-126 (390)
290 COG5257 GCD11 Translation init 99.3 3.8E-11 8.3E-16 91.5 11.1 161 11-173 8-203 (415)
291 smart00010 small_GTPase Small 99.3 3.2E-12 6.9E-17 87.0 4.9 113 14-161 1-115 (124)
292 KOG0458 Elongation factor 1 al 99.3 8.7E-11 1.9E-15 95.9 13.8 159 5-163 169-373 (603)
293 COG2895 CysN GTPases - Sulfate 99.3 3.3E-11 7.1E-16 93.0 10.6 149 11-161 4-192 (431)
294 KOG3905 Dynein light intermedi 99.3 9E-11 1.9E-15 89.7 12.6 158 13-173 52-291 (473)
295 KOG1707 Predicted Ras related/ 99.3 1.5E-10 3.3E-15 94.5 14.6 164 8-176 420-586 (625)
296 TIGR00157 ribosome small subun 99.3 2.4E-11 5.1E-16 92.4 9.2 95 73-169 24-120 (245)
297 PRK14845 translation initiatio 99.3 7.1E-11 1.5E-15 104.5 12.9 103 64-169 528-670 (1049)
298 TIGR00073 hypB hydrogenase acc 99.3 9.9E-11 2.1E-15 87.0 11.9 151 10-170 19-205 (207)
299 PF05049 IIGP: Interferon-indu 99.3 1E-11 2.2E-16 98.3 6.5 161 10-176 32-222 (376)
300 COG1126 GlnQ ABC-type polar am 99.3 5.8E-11 1.3E-15 86.0 9.7 51 158-213 138-188 (240)
301 COG1120 FepC ABC-type cobalami 99.3 8.7E-12 1.9E-16 93.9 5.7 54 150-210 134-187 (258)
302 PRK07560 elongation factor EF- 99.2 2.8E-11 6.2E-16 105.3 9.1 116 12-130 19-152 (731)
303 PRK09601 GTP-binding protein Y 99.2 2E-10 4.3E-15 91.0 11.8 81 14-96 3-107 (364)
304 TIGR02836 spore_IV_A stage IV 99.2 5.7E-10 1.2E-14 88.7 13.3 152 13-166 17-231 (492)
305 PF05783 DLIC: Dynein light in 99.2 9.2E-10 2E-14 90.3 15.0 164 9-175 21-267 (472)
306 PF00350 Dynamin_N: Dynamin fa 99.2 1.3E-10 2.8E-15 83.5 8.9 63 63-127 102-168 (168)
307 COG1117 PstB ABC-type phosphat 99.2 2.7E-11 5.8E-16 87.5 5.0 54 152-210 145-198 (253)
308 PF00735 Septin: Septin; Inte 99.2 5.6E-10 1.2E-14 86.3 12.5 116 13-131 4-156 (281)
309 KOG3886 GTP-binding protein [S 99.2 7.8E-11 1.7E-15 85.8 7.2 160 13-175 4-181 (295)
310 KOG0461 Selenocysteine-specifi 99.2 9.1E-10 2E-14 84.9 12.8 159 13-175 7-196 (522)
311 KOG0705 GTPase-activating prot 99.2 6.8E-11 1.5E-15 95.8 6.6 158 9-173 26-190 (749)
312 TIGR00750 lao LAO/AO transport 99.1 4.9E-10 1.1E-14 87.9 10.3 101 61-171 126-237 (300)
313 KOG1144 Translation initiation 99.1 3.7E-10 8.1E-15 94.5 9.7 160 8-170 470-685 (1064)
314 KOG0082 G-protein alpha subuni 99.1 3.2E-10 6.9E-15 88.8 7.8 119 55-173 188-345 (354)
315 PF03308 ArgK: ArgK protein; 99.1 3.5E-10 7.7E-15 84.6 7.7 99 62-170 122-228 (266)
316 COG4108 PrfC Peptide chain rel 99.1 5.8E-10 1.3E-14 88.4 9.1 137 12-151 11-167 (528)
317 COG3638 ABC-type phosphate/pho 99.1 7.7E-11 1.7E-15 86.5 3.8 55 149-210 142-196 (258)
318 smart00053 DYNc Dynamin, GTPas 99.1 5E-10 1.1E-14 84.3 8.0 69 62-132 125-207 (240)
319 KOG0468 U5 snRNP-specific prot 99.1 9.1E-10 2E-14 91.3 9.7 115 12-129 127-261 (971)
320 COG1131 CcmA ABC-type multidru 99.1 3.1E-09 6.7E-14 83.0 11.9 46 161-211 141-186 (293)
321 TIGR00993 3a0901s04IAP86 chlor 99.0 1.5E-09 3.3E-14 90.9 10.1 119 12-131 117-250 (763)
322 COG0378 HypB Ni2+-binding GTPa 99.0 3.2E-09 6.9E-14 75.9 10.1 76 87-171 119-200 (202)
323 COG3276 SelB Selenocysteine-sp 99.0 2.5E-09 5.5E-14 85.1 10.6 155 15-171 2-161 (447)
324 COG1703 ArgK Putative periplas 99.0 3E-09 6.4E-14 80.9 10.4 100 62-171 144-253 (323)
325 COG0012 Predicted GTPase, prob 99.0 6.5E-09 1.4E-13 81.5 12.2 82 13-96 2-108 (372)
326 KOG2655 Septin family protein 99.0 1.8E-08 4E-13 79.1 13.8 162 13-180 21-222 (366)
327 COG1136 SalX ABC-type antimicr 99.0 8.1E-09 1.8E-13 76.5 11.1 48 158-210 144-191 (226)
328 PRK10463 hydrogenase nickel in 99.0 5.9E-09 1.3E-13 80.2 10.4 54 117-170 230-287 (290)
329 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 1.6E-09 3.4E-14 75.6 6.4 54 15-72 85-138 (141)
330 COG0411 LivG ABC-type branched 99.0 7.7E-10 1.7E-14 81.7 4.8 45 161-210 154-198 (250)
331 cd01858 NGP_1 NGP-1. Autoanti 99.0 2.3E-09 5E-14 76.2 7.1 56 12-71 101-156 (157)
332 cd01900 YchF YchF subfamily. 99.0 1.5E-09 3.2E-14 83.4 6.5 79 16-96 1-103 (274)
333 COG2884 FtsE Predicted ATPase 99.0 1.7E-09 3.7E-14 76.9 5.8 50 159-213 140-189 (223)
334 cd03293 ABC_NrtD_SsuB_transpor 98.9 2.4E-08 5.2E-13 75.0 12.3 48 157-209 132-179 (220)
335 cd03222 ABC_RNaseL_inhibitor T 98.9 1.4E-08 3E-13 73.3 10.5 47 159-210 74-120 (177)
336 COG3839 MalK ABC-type sugar tr 98.9 4.9E-09 1.1E-13 82.2 8.6 47 159-210 136-182 (338)
337 PRK13537 nodulation ABC transp 98.9 2.2E-08 4.7E-13 78.8 12.3 49 158-211 140-188 (306)
338 COG0410 LivF ABC-type branched 98.9 2.2E-08 4.8E-13 73.5 11.2 51 155-210 135-185 (237)
339 COG4555 NatA ABC-type Na+ tran 98.9 4.1E-09 8.8E-14 75.8 7.1 46 162-212 139-184 (245)
340 PRK13536 nodulation factor exp 98.9 2.4E-08 5.1E-13 79.6 12.1 49 158-211 174-222 (340)
341 COG5019 CDC3 Septin family pro 98.9 7.7E-08 1.7E-12 75.2 14.5 137 12-151 22-200 (373)
342 cd04178 Nucleostemin_like Nucl 98.9 4.1E-09 9E-14 75.8 7.0 55 13-71 117-171 (172)
343 COG1122 CbiO ABC-type cobalt t 98.9 2.6E-09 5.5E-14 80.3 6.2 53 152-211 136-188 (235)
344 COG1124 DppF ABC-type dipeptid 98.9 6E-09 1.3E-13 77.0 7.8 48 158-210 143-190 (252)
345 COG1116 TauB ABC-type nitrate/ 98.9 4.1E-09 8.9E-14 78.4 6.8 48 158-210 132-179 (248)
346 COG4598 HisP ABC-type histidin 98.9 5.6E-09 1.2E-13 73.8 7.1 50 159-213 155-204 (256)
347 KOG2486 Predicted GTPase [Gene 98.9 2.6E-09 5.6E-14 80.2 5.6 153 10-169 133-313 (320)
348 TIGR01188 drrA daunorubicin re 98.9 2.2E-08 4.7E-13 78.8 11.2 49 158-211 126-174 (302)
349 COG1135 AbcC ABC-type metal io 98.9 5.5E-09 1.2E-13 79.8 7.4 48 158-210 143-190 (339)
350 COG1137 YhbG ABC-type (unclass 98.9 5.5E-10 1.2E-14 80.1 1.5 53 155-212 138-190 (243)
351 KOG1547 Septin CDC10 and relat 98.9 4.3E-08 9.3E-13 72.2 11.1 141 12-156 45-227 (336)
352 TIGR03608 L_ocin_972_ABC putat 98.9 5E-08 1.1E-12 72.5 11.9 49 158-211 136-184 (206)
353 TIGR01189 ccmA heme ABC export 98.9 7.4E-08 1.6E-12 71.1 12.6 49 158-211 129-177 (198)
354 COG4161 ArtP ABC-type arginine 98.9 3.4E-09 7.5E-14 73.5 5.0 50 159-213 144-193 (242)
355 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.9 4.1E-08 9E-13 73.6 11.2 47 158-209 142-188 (218)
356 cd03218 ABC_YhbG The ABC trans 98.9 6.7E-08 1.4E-12 73.2 12.5 49 158-211 135-183 (232)
357 KOG0465 Mitochondrial elongati 98.9 1.8E-09 3.9E-14 88.7 4.1 201 11-220 37-255 (721)
358 TIGR00960 3a0501s02 Type II (G 98.9 4E-08 8.6E-13 73.6 11.1 51 156-211 138-188 (216)
359 PRK13538 cytochrome c biogenes 98.9 6.1E-08 1.3E-12 71.9 11.9 49 158-211 131-179 (204)
360 cd03266 ABC_NatA_sodium_export 98.9 4.2E-08 9E-13 73.6 11.1 49 158-211 138-186 (218)
361 COG2274 SunT ABC-type bacterio 98.9 5.5E-09 1.2E-13 90.0 7.0 48 158-210 611-658 (709)
362 TIGR01288 nodI ATP-binding ABC 98.9 5.5E-08 1.2E-12 76.5 12.1 49 158-211 137-185 (303)
363 COG3842 PotA ABC-type spermidi 98.9 5.8E-09 1.3E-13 82.2 6.4 54 150-210 132-185 (352)
364 cd01855 YqeH YqeH. YqeH is an 98.9 5.2E-09 1.1E-13 76.8 5.8 56 13-71 127-189 (190)
365 TIGR01166 cbiO cobalt transpor 98.9 1E-08 2.3E-13 75.2 7.4 49 158-211 129-177 (190)
366 cd03231 ABC_CcmA_heme_exporter 98.9 7.3E-08 1.6E-12 71.3 11.9 49 158-211 127-175 (201)
367 cd03219 ABC_Mj1267_LivG_branch 98.9 8.1E-08 1.8E-12 72.9 12.4 49 158-211 145-193 (236)
368 cd03226 ABC_cobalt_CbiO_domain 98.9 9E-08 2E-12 71.1 12.4 49 158-211 128-176 (205)
369 PF00503 G-alpha: G-protein al 98.8 1.3E-08 2.7E-13 82.9 8.3 70 60-129 234-315 (389)
370 cd03261 ABC_Org_Solvent_Resist 98.8 5.9E-08 1.3E-12 73.6 11.4 47 158-209 138-184 (235)
371 COG4152 ABC-type uncharacteriz 98.8 1.6E-08 3.5E-13 74.8 7.8 72 135-213 108-182 (300)
372 cd01855 YqeH YqeH. YqeH is an 98.8 1.8E-08 3.8E-13 74.0 8.1 107 75-186 24-139 (190)
373 cd03269 ABC_putative_ATPase Th 98.8 5.6E-08 1.2E-12 72.4 10.9 49 158-211 130-178 (210)
374 cd03292 ABC_FtsE_transporter F 98.8 5.9E-08 1.3E-12 72.5 11.0 50 157-211 137-186 (214)
375 cd03259 ABC_Carb_Solutes_like 98.8 6.1E-08 1.3E-12 72.4 11.1 47 158-209 132-178 (213)
376 TIGR02673 FtsE cell division A 98.8 7.7E-08 1.7E-12 71.9 11.6 50 157-211 138-187 (214)
377 PRK12289 GTPase RsgA; Reviewed 98.8 2.2E-08 4.7E-13 79.8 9.0 92 76-169 80-172 (352)
378 COG0050 TufB GTPases - transla 98.8 2.4E-08 5.2E-13 75.7 8.6 143 10-155 9-176 (394)
379 cd03262 ABC_HisP_GlnQ_permease 98.8 7.4E-08 1.6E-12 71.9 11.4 49 158-211 137-185 (213)
380 KOG0464 Elongation factor G [T 98.8 5.7E-09 1.2E-13 82.5 5.4 155 11-168 35-207 (753)
381 cd03225 ABC_cobalt_CbiO_domain 98.8 1.5E-08 3.3E-13 75.5 7.5 49 158-211 136-184 (211)
382 KOG0410 Predicted GTP binding 98.8 1.3E-08 2.8E-13 78.0 7.0 158 10-176 175-345 (410)
383 cd01859 MJ1464 MJ1464. This f 98.8 1.8E-08 3.8E-13 71.6 7.4 93 78-173 5-97 (156)
384 cd03268 ABC_BcrA_bacitracin_re 98.8 9.4E-08 2E-12 71.1 11.5 48 159-211 129-176 (208)
385 PRK13651 cobalt transporter AT 98.8 6E-08 1.3E-12 76.3 10.9 52 155-211 164-215 (305)
386 cd01856 YlqF YlqF. Proteins o 98.8 1.6E-08 3.4E-13 72.9 7.1 58 11-72 113-170 (171)
387 PRK10619 histidine/lysine/argi 98.8 1.2E-07 2.6E-12 72.9 12.3 49 158-211 154-202 (257)
388 TIGR03864 PQQ_ABC_ATP ABC tran 98.8 1.4E-07 3E-12 71.6 12.4 47 158-209 134-180 (236)
389 cd03264 ABC_drug_resistance_li 98.8 8.6E-08 1.9E-12 71.5 11.1 48 158-210 132-179 (211)
390 cd03263 ABC_subfamily_A The AB 98.8 1.1E-07 2.5E-12 71.3 11.8 47 158-209 135-181 (220)
391 PRK10908 cell division protein 98.8 1.1E-07 2.4E-12 71.5 11.6 48 158-210 139-186 (222)
392 cd03230 ABC_DR_subfamily_A Thi 98.8 1.3E-07 2.7E-12 68.4 11.5 48 159-211 98-145 (173)
393 cd01854 YjeQ_engC YjeQ/EngC. 98.8 2.4E-08 5.3E-13 77.8 8.3 88 80-169 73-161 (287)
394 cd03301 ABC_MalK_N The N-termi 98.8 1.3E-07 2.8E-12 70.7 11.9 47 158-209 132-178 (213)
395 cd03215 ABC_Carb_Monos_II This 98.8 3.9E-08 8.5E-13 71.6 8.9 48 159-211 107-154 (182)
396 cd03265 ABC_DrrA DrrA is the A 98.8 1.1E-07 2.4E-12 71.4 11.6 47 159-210 134-180 (220)
397 cd03258 ABC_MetN_methionine_tr 98.8 8.5E-08 1.8E-12 72.6 11.0 49 157-210 141-189 (233)
398 PRK13631 cbiO cobalt transport 98.8 8.7E-08 1.9E-12 75.8 11.4 53 154-211 174-226 (320)
399 PRK11153 metN DL-methionine tr 98.8 7.9E-08 1.7E-12 76.8 11.3 48 158-210 142-189 (343)
400 cd03237 ABC_RNaseL_inhibitor_d 98.8 1.4E-07 3.1E-12 71.9 12.2 47 158-209 117-163 (246)
401 cd03216 ABC_Carb_Monos_I This 98.8 4.1E-08 8.9E-13 70.2 8.7 48 159-211 85-132 (163)
402 PRK11264 putative amino-acid A 98.8 1.2E-07 2.6E-12 72.6 11.9 49 158-211 146-194 (250)
403 cd03238 ABC_UvrA The excision 98.8 5.1E-08 1.1E-12 70.3 9.2 47 159-210 90-138 (176)
404 PRK13641 cbiO cobalt transport 98.8 1.5E-07 3.3E-12 73.5 12.5 51 156-211 145-195 (287)
405 PRK13637 cbiO cobalt transport 98.8 2.5E-08 5.3E-13 77.9 8.0 49 157-210 145-193 (287)
406 cd03267 ABC_NatA_like Similar 98.8 1.9E-07 4.2E-12 70.8 12.6 48 158-210 155-202 (236)
407 TIGR03740 galliderm_ABC gallid 98.8 2.3E-07 4.9E-12 69.8 12.8 49 158-211 126-174 (223)
408 PRK09536 btuD corrinoid ABC tr 98.8 2.9E-08 6.2E-13 80.6 8.4 50 157-211 140-189 (402)
409 COG4619 ABC-type uncharacteriz 98.8 4E-08 8.6E-13 68.8 7.9 49 156-209 133-181 (223)
410 PRK11650 ugpC glycerol-3-phosp 98.8 9.1E-08 2E-12 76.8 11.2 49 157-210 135-183 (356)
411 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.8 1.3E-07 2.8E-12 66.1 10.6 42 161-207 75-116 (144)
412 PRK13543 cytochrome c biogenes 98.8 2.9E-07 6.3E-12 68.8 13.1 50 157-211 138-187 (214)
413 COG3845 ABC-type uncharacteriz 98.8 1.9E-08 4.1E-13 81.3 7.0 73 134-213 117-192 (501)
414 cd03295 ABC_OpuCA_Osmoprotecti 98.8 1.3E-07 2.8E-12 72.1 11.4 47 158-209 137-183 (242)
415 PRK13646 cbiO cobalt transport 98.8 9.9E-08 2.1E-12 74.5 10.9 50 155-209 144-193 (286)
416 PRK11629 lolD lipoprotein tran 98.8 1.3E-07 2.9E-12 71.6 11.2 47 158-209 147-193 (233)
417 PRK13540 cytochrome c biogenes 98.8 1.9E-07 4E-12 69.1 11.8 49 158-211 129-177 (200)
418 PRK10895 lipopolysaccharide AB 98.8 1.3E-07 2.9E-12 72.0 11.2 48 159-211 140-187 (241)
419 TIGR02211 LolD_lipo_ex lipopro 98.8 1.3E-07 2.8E-12 71.1 11.1 47 158-209 143-189 (221)
420 PRK09563 rbgA GTPase YlqF; Rev 98.8 3.2E-08 6.9E-13 77.2 8.0 58 11-72 119-176 (287)
421 cd03233 ABC_PDR_domain1 The pl 98.8 1.8E-07 4E-12 69.2 11.6 47 159-210 121-167 (202)
422 TIGR02314 ABC_MetN D-methionin 98.8 1.2E-07 2.6E-12 75.6 11.3 48 158-210 142-189 (343)
423 TIGR03522 GldA_ABC_ATP gliding 98.8 1.7E-07 3.8E-12 73.6 12.1 46 159-209 136-181 (301)
424 TIGR03258 PhnT 2-aminoethylpho 98.8 1.7E-07 3.6E-12 75.4 12.0 50 156-210 137-186 (362)
425 PRK11248 tauB taurine transpor 98.8 2E-07 4.3E-12 71.6 12.0 46 158-208 130-175 (255)
426 PRK13643 cbiO cobalt transport 98.8 1.9E-07 4.1E-12 72.9 12.1 51 156-211 144-194 (288)
427 PRK11247 ssuB aliphatic sulfon 98.8 1.2E-07 2.7E-12 72.7 10.8 47 158-209 135-181 (257)
428 cd01859 MJ1464 MJ1464. This f 98.8 3.2E-08 7E-13 70.2 7.1 56 12-71 100-155 (156)
429 cd03229 ABC_Class3 This class 98.8 9.5E-08 2.1E-12 69.3 9.7 47 159-210 103-149 (178)
430 TIGR01184 ntrCD nitrate transp 98.8 2.3E-07 5E-12 70.1 12.1 48 158-210 116-163 (230)
431 TIGR03596 GTPase_YlqF ribosome 98.8 2.8E-08 6.1E-13 77.1 7.2 58 11-72 116-173 (276)
432 PRK11124 artP arginine transpo 98.8 1.6E-07 3.5E-12 71.6 11.2 49 158-211 143-191 (242)
433 PRK13539 cytochrome c biogenes 98.8 1.8E-07 4E-12 69.5 11.2 49 158-211 129-177 (207)
434 COG1161 Predicted GTPases [Gen 98.8 2.4E-08 5.1E-13 78.9 6.7 58 11-72 130-187 (322)
435 PRK11831 putative ABC transpor 98.7 2E-07 4.3E-12 72.1 11.8 48 158-210 145-192 (269)
436 cd03235 ABC_Metallic_Cations A 98.7 8.3E-08 1.8E-12 71.7 9.4 49 158-211 134-182 (213)
437 cd03297 ABC_ModC_molybdenum_tr 98.7 2.1E-07 4.5E-12 69.6 11.5 47 159-210 134-180 (214)
438 PRK11144 modC molybdate transp 98.7 2.3E-07 5E-12 74.5 12.3 48 158-210 130-177 (352)
439 cd03224 ABC_TM1139_LivF_branch 98.7 1.1E-07 2.3E-12 71.5 9.9 47 159-210 135-181 (222)
440 TIGR02142 modC_ABC molybdenum 98.7 3.2E-07 6.9E-12 73.8 13.1 49 157-210 132-180 (354)
441 PRK11300 livG leucine/isoleuci 98.7 1.7E-07 3.7E-12 72.0 11.2 48 158-210 155-202 (255)
442 COG1127 Ttg2A ABC-type transpo 98.7 4.4E-08 9.5E-13 72.4 7.4 43 163-210 152-194 (263)
443 cd03294 ABC_Pro_Gly_Bertaine T 98.7 2.9E-07 6.2E-12 71.3 12.3 47 158-209 162-208 (269)
444 PRK00098 GTPase RsgA; Reviewed 98.7 5.5E-08 1.2E-12 76.2 8.4 85 82-168 77-163 (298)
445 TIGR03265 PhnT2 putative 2-ami 98.7 2.4E-07 5.3E-12 74.2 12.2 51 155-210 133-183 (353)
446 PRK10584 putative ABC transpor 98.7 2.2E-07 4.7E-12 70.2 11.3 48 158-210 148-195 (228)
447 COG0396 sufC Cysteine desulfur 98.7 2.5E-07 5.5E-12 68.0 11.1 50 158-212 146-195 (251)
448 cd03296 ABC_CysA_sulfate_impor 98.7 2.5E-07 5.5E-12 70.3 11.7 47 158-209 138-184 (239)
449 PRK13638 cbiO cobalt transport 98.7 8.8E-08 1.9E-12 74.2 9.3 49 158-211 138-186 (271)
450 PRK13634 cbiO cobalt transport 98.7 2.1E-07 4.6E-12 72.7 11.5 49 157-210 146-194 (290)
451 COG5192 BMS1 GTP-binding prote 98.7 1.7E-07 3.7E-12 77.0 11.2 137 10-156 66-210 (1077)
452 PRK10851 sulfate/thiosulfate t 98.7 2E-07 4.3E-12 74.7 11.6 49 157-210 137-185 (353)
453 TIGR00972 3a0107s01c2 phosphat 98.7 3.5E-07 7.5E-12 69.9 12.4 49 157-210 145-193 (247)
454 COG1125 OpuBA ABC-type proline 98.7 1.2E-08 2.5E-13 76.1 4.0 48 158-210 137-184 (309)
455 TIGR01186 proV glycine betaine 98.7 2.1E-07 4.5E-12 74.7 11.5 48 157-209 130-177 (363)
456 KOG3887 Predicted small GTPase 98.7 8.7E-08 1.9E-12 70.7 8.4 158 14-174 28-204 (347)
457 PRK11432 fbpC ferric transport 98.7 2.8E-07 6.1E-12 73.8 12.2 49 157-210 137-185 (351)
458 PRK09493 glnQ glutamine ABC tr 98.7 3E-07 6.5E-12 70.0 11.8 49 158-211 138-186 (240)
459 PRK13647 cbiO cobalt transport 98.7 1.6E-07 3.4E-12 72.9 10.4 51 156-211 138-188 (274)
460 PRK11000 maltose/maltodextrin 98.7 2.5E-07 5.5E-12 74.6 11.9 49 157-210 134-182 (369)
461 cd03246 ABCC_Protease_Secretio 98.7 8.4E-08 1.8E-12 69.3 8.2 48 159-211 99-146 (173)
462 TIGR02769 nickel_nikE nickel i 98.7 7.6E-08 1.7E-12 74.3 8.5 48 158-210 152-199 (265)
463 cd03257 ABC_NikE_OppD_transpor 98.7 6.1E-08 1.3E-12 73.1 7.7 48 158-210 147-194 (228)
464 cd01849 YlqF_related_GTPase Yl 98.7 5E-08 1.1E-12 69.2 6.7 57 11-71 98-154 (155)
465 COG3840 ThiQ ABC-type thiamine 98.7 1E-07 2.2E-12 67.7 8.0 48 158-210 131-178 (231)
466 PRK13644 cbiO cobalt transport 98.7 2.7E-07 5.8E-12 71.6 11.2 49 158-211 138-186 (274)
467 COG0488 Uup ATPase components 98.7 2E-07 4.2E-12 78.1 11.1 49 156-209 153-201 (530)
468 TIGR03415 ABC_choXWV_ATP choli 98.7 2.3E-07 5E-12 74.8 11.1 49 157-210 165-213 (382)
469 PRK13649 cbiO cobalt transport 98.7 4.9E-07 1.1E-11 70.4 12.7 49 158-211 147-195 (280)
470 TIGR01277 thiQ thiamine ABC tr 98.7 5.8E-07 1.2E-11 67.2 12.6 48 158-210 130-177 (213)
471 cd03214 ABC_Iron-Siderophores_ 98.7 7.1E-08 1.5E-12 70.1 7.5 47 159-210 100-146 (180)
472 cd03298 ABC_ThiQ_thiamine_tran 98.7 3.1E-07 6.7E-12 68.5 11.1 47 158-209 130-176 (211)
473 PRK14250 phosphate ABC transpo 98.7 3.7E-07 8E-12 69.5 11.7 47 158-209 133-179 (241)
474 PRK13541 cytochrome c biogenes 98.7 4.6E-07 1E-11 66.7 11.9 49 158-211 125-173 (195)
475 PRK15079 oligopeptide ABC tran 98.7 2.2E-07 4.8E-12 73.9 10.8 49 157-210 162-210 (331)
476 PRK14247 phosphate ABC transpo 98.7 6.8E-07 1.5E-11 68.4 13.1 48 157-209 147-194 (250)
477 COG1129 MglA ABC-type sugar tr 98.7 7.2E-08 1.6E-12 79.1 8.0 50 159-213 148-197 (500)
478 PRK09452 potA putrescine/sperm 98.7 3.1E-07 6.7E-12 74.1 11.6 48 158-210 146-193 (375)
479 cd03260 ABC_PstB_phosphate_tra 98.7 7E-08 1.5E-12 72.8 7.5 48 158-210 143-190 (227)
480 PRK13652 cbiO cobalt transport 98.7 1.5E-07 3.3E-12 73.1 9.5 49 157-210 138-186 (277)
481 TIGR01978 sufC FeS assembly AT 98.7 7.5E-07 1.6E-11 67.9 13.1 49 158-211 146-194 (243)
482 cd03299 ABC_ModC_like Archeal 98.7 5.9E-07 1.3E-11 68.1 12.4 49 157-210 130-178 (235)
483 cd03232 ABC_PDR_domain2 The pl 98.7 4.4E-07 9.6E-12 66.7 11.3 48 159-211 111-158 (192)
484 TIGR02982 heterocyst_DevA ABC 98.7 3E-07 6.5E-12 69.0 10.6 48 157-209 142-189 (220)
485 PRK15112 antimicrobial peptide 98.7 3.6E-07 7.7E-12 70.7 11.3 46 159-209 152-197 (267)
486 cd03236 ABC_RNaseL_inhibitor_d 98.7 3E-07 6.4E-12 70.5 10.6 48 158-210 141-188 (255)
487 TIGR02868 CydC thiol reductant 98.7 4.7E-08 1E-12 82.8 6.8 47 158-209 472-518 (529)
488 PRK14241 phosphate transporter 98.7 7.3E-07 1.6E-11 68.6 12.8 47 158-209 150-196 (258)
489 cd03213 ABCG_EPDR ABCG transpo 98.7 5.4E-07 1.2E-11 66.3 11.6 48 159-211 114-161 (194)
490 PRK15439 autoinducer 2 ABC tra 98.7 3.1E-07 6.7E-12 77.5 11.5 51 156-211 140-190 (510)
491 PRK10070 glycine betaine trans 98.7 3.4E-07 7.3E-12 74.4 11.2 47 158-209 166-212 (400)
492 TIGR02770 nickel_nikD nickel i 98.7 1.2E-07 2.5E-12 71.7 8.1 47 158-209 127-173 (230)
493 COG4988 CydD ABC-type transpor 98.7 7E-08 1.5E-12 79.7 7.1 48 159-211 459-506 (559)
494 PRK13635 cbiO cobalt transport 98.7 6.8E-08 1.5E-12 75.1 6.8 49 157-210 141-189 (279)
495 PRK10247 putative ABC transpor 98.7 6.2E-07 1.3E-11 67.6 11.9 46 159-209 140-185 (225)
496 PRK10418 nikD nickel transport 98.7 1.7E-07 3.7E-12 71.9 9.0 47 158-209 142-188 (254)
497 PRK11607 potG putrescine trans 98.7 4.9E-07 1.1E-11 73.1 11.9 50 155-209 148-197 (377)
498 TIGR02324 CP_lyasePhnL phospho 98.7 5.2E-07 1.1E-11 67.9 11.4 50 157-211 150-199 (224)
499 TIGR03411 urea_trans_UrtD urea 98.7 7.2E-07 1.6E-11 67.9 12.2 47 158-209 145-191 (242)
500 PRK11022 dppD dipeptide transp 98.7 2.3E-07 5.1E-12 73.6 9.8 48 158-210 155-202 (326)
No 1
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=3.9e-39 Score=241.06 Aligned_cols=218 Identities=99% Similarity=1.562 Sum_probs=195.6
Q ss_pred CCCCCCCcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccc
Q 027607 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (221)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~ 80 (221)
|++|+++..+...+||+++|.+|||||||+++++.+.+...+.++.|.++....+..++..+.+.+|||+|++.+..++.
T Consensus 1 ~~~~~~~~~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 80 (219)
T PLN03071 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (219)
T ss_pred CCCcccCCcCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhH
Confidence 89999999999999999999999999999999999999888999999998888877777789999999999999999999
Q ss_pred cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCCh
Q 027607 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv 160 (221)
.+++.++++++|||++++.+|..+..|+..+.....+.|+++|+||+|+.++....+...++...++.|+++||++|.|+
T Consensus 81 ~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (219)
T ss_pred HHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCH
Confidence 99999999999999999999999999999998777789999999999997655544445677778899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCCCCCCc
Q 027607 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDD 218 (221)
Q Consensus 161 ~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (221)
+++|.+|++.+....+...++.|...++....+....+...+.++..+...+.++++.
T Consensus 161 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (219)
T PLN03071 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQPLPDDDDD 218 (219)
T ss_pred HHHHHHHHHHHHcCcchhcccccccCCcccCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 9999999999998887777888888888888889999999998888887777666553
No 2
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=3.9e-37 Score=230.28 Aligned_cols=210 Identities=78% Similarity=1.296 Sum_probs=189.3
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
.....+||+++|++|||||||+++++.+.+...+.++.+.++....+..+++.+.+.+|||+|++.+..++..++..+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 35677999999999999999999889999888889999998888888888889999999999999888888889999999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
+++|||+++..++..+..|+..+.....+.|+++++||+|+.++....+...+....++.++++|+++|.|++++|.+|+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia 164 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999888776678999999999998765555555567777888999999999999999999999
Q ss_pred HHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCCCCCCc
Q 027607 169 RKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDD 218 (221)
Q Consensus 169 ~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (221)
+.+..+|++.++|||+..+.+..+++.......+.+++++.-++++++|+
T Consensus 165 ~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (215)
T PTZ00132 165 RRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAANVPLPDDDDD 214 (215)
T ss_pred HHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhhCCCCCCcCC
Confidence 99999999999999996666666999999999999999998899888775
No 3
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-37 Score=217.08 Aligned_cols=172 Identities=33% Similarity=0.580 Sum_probs=158.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.|||+++|++|||||+|+.||..+.+...+..|+|+++......++++.+.+++|||+|+++++++..+||++++++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCe-EEEecccCCCChHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~-~~~~s~~~~~gv~~~~~~ 166 (221)
+|||+++..||+++..|+.++..+. .++|.++|+||+|+.+.. + .+++..++...+++ ++++||+++.++++.|..
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~ 166 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLT 166 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHH
Confidence 9999999999999999999998886 577999999999997643 3 34566899999999 999999999999999999
Q ss_pred HHHHHhCCCCCccccC
Q 027607 167 LARKLAGDPNLHFVES 182 (221)
Q Consensus 167 l~~~l~~~~~~~~~~e 182 (221)
|+..+..........+
T Consensus 167 la~~lk~~~~~~~~~~ 182 (205)
T KOG0084|consen 167 LAKELKQRKGLHVKWS 182 (205)
T ss_pred HHHHHHHhcccCCCCC
Confidence 9999988776665554
No 4
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-36 Score=208.94 Aligned_cols=165 Identities=33% Similarity=0.584 Sum_probs=151.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
..++||+++|..+||||||+.|+..+.|.....+|+|..+......++...+.+.||||+|+++++++...||++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 46799999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCC-cc-ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~~-~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
+|||+++.+||..++.|+..+.... +++-+.+|+||+|+.+ +. ..+++..++...+..++++||++|.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 9999999999999999999998765 4566778999999977 33 3456778999999999999999999999999999
Q ss_pred HHHHhCCC
Q 027607 168 ARKLAGDP 175 (221)
Q Consensus 168 ~~~l~~~~ 175 (221)
++.+....
T Consensus 163 a~~lp~~~ 170 (200)
T KOG0092|consen 163 AEKLPCSD 170 (200)
T ss_pred HHhccCcc
Confidence 99886654
No 5
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=2.7e-34 Score=211.29 Aligned_cols=187 Identities=82% Similarity=1.325 Sum_probs=159.9
Q ss_pred EcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEECCCh
Q 027607 19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 98 (221)
Q Consensus 19 ~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 98 (221)
+|.+|||||||+++++.+.+...+.++.|.++....+.++++.+.+.+|||+|++.+..++..++++++++++|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999998888889999999888888888899999999999999999999999999999999999999
Q ss_pred hhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHHhCCCCCc
Q 027607 99 LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLH 178 (221)
Q Consensus 99 ~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~~~~~~ 178 (221)
.+|..+..|+..+.....+.|+++|+||+|+..+.+..+...++...++.++++||++|.|+.++|.+|++.+.....+.
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~~~ 160 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 160 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcccce
Confidence 99999999999998877789999999999987665555556777788899999999999999999999999998876655
Q ss_pred cccCCCCCCCccccchHHHHHHHHHHH
Q 027607 179 FVESPALAPPEVQIDLAAQQQHEAELA 205 (221)
Q Consensus 179 ~~~ep~~~~~~~~~~~~~~~~~~~~~~ 205 (221)
...-|...+.....++...+...+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (200)
T smart00176 161 FVAMPALAPPEVVMDPALAAQYEHDLE 187 (200)
T ss_pred eccCcccCCcccccChhhhhhhhHHHH
Confidence 555555555554455555555555444
No 6
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-35 Score=207.50 Aligned_cols=168 Identities=30% Similarity=0.586 Sum_probs=155.5
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
.-.+-+||+++|++|||||+|+.++..+.+...+..++|+++...++.+++..+.+++|||+|+++++.+...|++.+++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCC-cccc-HHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~ 165 (221)
+++|||+++..||+++..|+..+..+. +.+|.++|+||+|+.. +.+. +...+++.+.++.++++||++|.|+.+.|.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 999999999999999999999999886 4899999999999976 3343 445689999999999999999999999999
Q ss_pred HHHHHHhCCCC
Q 027607 166 YLARKLAGDPN 176 (221)
Q Consensus 166 ~l~~~l~~~~~ 176 (221)
.|++.+....+
T Consensus 168 ~La~~i~~k~~ 178 (207)
T KOG0078|consen 168 SLARDILQKLE 178 (207)
T ss_pred HHHHHHHhhcc
Confidence 99999986443
No 7
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=6.1e-35 Score=197.57 Aligned_cols=167 Identities=31% Similarity=0.549 Sum_probs=154.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
..+||+++|.+|+|||||+.++..+.+.+....++|+++..+...++++...+-+|||+|+++++.+...||+.+.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 45999999999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCcCC-c-cccHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-R-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~-~-~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
|||++.+.+|.++..|.+++..++. ++-.++|+||+|... + ...++...+++++++-++++||++..|++.+|+.+
T Consensus 90 VYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Feel 169 (209)
T KOG0080|consen 90 VYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEEL 169 (209)
T ss_pred EEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHH
Confidence 9999999999999999999998874 555679999999873 3 34557789999999999999999999999999999
Q ss_pred HHHHhCCCCCc
Q 027607 168 ARKLAGDPNLH 178 (221)
Q Consensus 168 ~~~l~~~~~~~ 178 (221)
+..+++.|.+.
T Consensus 170 veKIi~tp~l~ 180 (209)
T KOG0080|consen 170 VEKIIETPSLW 180 (209)
T ss_pred HHHHhcCcchh
Confidence 99999988755
No 8
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-35 Score=203.96 Aligned_cols=167 Identities=31% Similarity=0.560 Sum_probs=150.6
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d 87 (221)
....+.+|++++|+.+||||||+++++.+.+...|..|+|.++...++.+.+..+++++|||+|+++++.+...|++++.
T Consensus 17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 45567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHH
Q 027607 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~ 163 (221)
++|+|||+++..||++..+|+..+..... .+-+++|+||.|+.+. +. ..+....+.+++..|+++|++.|.|+..+
T Consensus 97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~l 176 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQL 176 (221)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHH
Confidence 99999999999999999999999987753 4667799999999763 33 33455788889999999999999999999
Q ss_pred HHHHHHHHhCC
Q 027607 164 FLYLARKLAGD 174 (221)
Q Consensus 164 ~~~l~~~l~~~ 174 (221)
|..|+.++...
T Consensus 177 FrrIaa~l~~~ 187 (221)
T KOG0094|consen 177 FRRIAAALPGM 187 (221)
T ss_pred HHHHHHhccCc
Confidence 99988876554
No 9
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=2.5e-34 Score=209.92 Aligned_cols=165 Identities=22% Similarity=0.498 Sum_probs=147.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
+.+||+++|..|||||||++++..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 45999999999999999999999998888888888888877778888888999999999999999999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
|||++++.+|+.+..|+..+....++.|+++|+||+|+... .+ ..+...++...++.++++||++|.|++++|++|++
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999999999877789999999999999642 33 34566788888999999999999999999999999
Q ss_pred HHhCCCC
Q 027607 170 KLAGDPN 176 (221)
Q Consensus 170 ~l~~~~~ 176 (221)
.+.....
T Consensus 165 ~i~~~~~ 171 (189)
T cd04121 165 IVLMRHG 171 (189)
T ss_pred HHHHhcC
Confidence 8876544
No 10
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=3.2e-34 Score=198.50 Aligned_cols=166 Identities=31% Similarity=0.642 Sum_probs=151.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
...+||.++|++|+|||||+|+|..++|...+..|+|.++-.+.+.+++..+.+++|||+|++++.++...+|+.+|+++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 45599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCcCC---ccccH-HHHHHHhhc-CCeEEEecccCCCCh
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN---RQVKA-KQVTFHRKK-NLQYYEISAKSNYNF 160 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~---~~~~~-~~~~~~~~~-~~~~~~~s~~~~~gv 160 (221)
+|||++++.||+.+..|..++..+. ...|+++++||+|+.+ +.+.. ++..||... +++|+++||+...|+
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV 166 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV 166 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence 9999999999999999999987664 3689999999999965 55544 466888765 589999999999999
Q ss_pred HHHHHHHHHHHhCCCC
Q 027607 161 EKPFLYLARKLAGDPN 176 (221)
Q Consensus 161 ~~~~~~l~~~l~~~~~ 176 (221)
.++|+.+++..+.+..
T Consensus 167 ~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 167 DEAFEEIARRALANED 182 (210)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999998877664
No 11
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-34 Score=200.88 Aligned_cols=165 Identities=32% Similarity=0.541 Sum_probs=154.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.+|+.++|+.|||||+|+.++..+.|.+.+..|+|+++-...+.++++.+.+++|||+|++.+++....||+.+.+++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
+|||++.+++|..+..|+..+.++. ++..+++++||+|+..++ ..+|..+++.++++.++++||+++.|++++|..+
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nt 163 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINT 163 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHH
Confidence 9999999999999999999999985 899999999999997543 3456679999999999999999999999999999
Q ss_pred HHHHhCCC
Q 027607 168 ARKLAGDP 175 (221)
Q Consensus 168 ~~~l~~~~ 175 (221)
++.+++.-
T Consensus 164 a~~Iy~~~ 171 (216)
T KOG0098|consen 164 AKEIYRKI 171 (216)
T ss_pred HHHHHHHH
Confidence 99887643
No 12
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=2e-33 Score=203.06 Aligned_cols=158 Identities=28% Similarity=0.475 Sum_probs=139.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|.+|+|||||+.+++.+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..++++++++++||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888899998655 455677888899999999999999999999999999999999
Q ss_pred ECCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCcCCc------------cccHHHHHHHhhcCC-eEEEecccCCCC
Q 027607 94 DVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR------------QVKAKQVTFHRKKNL-QYYEISAKSNYN 159 (221)
Q Consensus 94 d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~-~~~~~s~~~~~g 159 (221)
|++++.||+.+ ..|+..+....++.|+++|+||+|+.+. ....+...++...++ .++++||++|.|
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n 160 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN 160 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence 99999999998 6899998777678999999999998643 223456678888887 699999999999
Q ss_pred hHHHHHHHHHHHh
Q 027607 160 FEKPFLYLARKLA 172 (221)
Q Consensus 160 v~~~~~~l~~~l~ 172 (221)
++++|..+++.+.
T Consensus 161 V~~~F~~~~~~~~ 173 (176)
T cd04133 161 VKAVFDAAIKVVL 173 (176)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999763
No 13
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=2.7e-33 Score=201.37 Aligned_cols=164 Identities=87% Similarity=1.432 Sum_probs=146.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|++|||||||+++++.+.+...+.++.+.+.........++.+.+.+|||+|++.+..++..++..+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888888889988887777777778899999999999999888889999999999999
Q ss_pred ECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
|+++..++..+..|+..+.....+.|+++|+||+|+.++....+...++...++.++++||++|.|++++|++|++.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 99999999999999999988777899999999999976655555556677778899999999999999999999999987
Q ss_pred CCCC
Q 027607 174 DPNL 177 (221)
Q Consensus 174 ~~~~ 177 (221)
.|++
T Consensus 161 ~~~~ 164 (166)
T cd00877 161 NPNL 164 (166)
T ss_pred cccc
Confidence 7654
No 14
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2.2e-33 Score=206.82 Aligned_cols=161 Identities=29% Similarity=0.602 Sum_probs=141.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+.|+++|..|||||||++++..+.+...+.++.+.++....+.+++..+.+.+|||+|++.++.++..|++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 46999999999999999999999998888899998888888888888899999999999999999999999999999999
Q ss_pred ECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCC-cccc-HHHHHHHhhc-CCeEEEecccCCCChHHHHHHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~~~~-~~~~~~~~~~-~~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
|++++.+|+.+..|+..+.... .+.|+++|+||+|+.+ +.+. .+...++... ++.++++||++|.|+.++|.++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999998887654 5799999999999864 3333 3344566554 788999999999999999999999
Q ss_pred HHhCC
Q 027607 170 KLAGD 174 (221)
Q Consensus 170 ~l~~~ 174 (221)
.+...
T Consensus 161 ~~~~~ 165 (202)
T cd04120 161 DILKK 165 (202)
T ss_pred HHHHh
Confidence 88664
No 15
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=4.1e-33 Score=202.59 Aligned_cols=160 Identities=24% Similarity=0.404 Sum_probs=141.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
..+||+++|++|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++++
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 679999999999999999999999999888888887554 4567788888999999999999999999999999999999
Q ss_pred EEECCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCcCCc--------------cccHHHHHHHhhcCC-eEEEeccc
Q 027607 92 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYEISAK 155 (221)
Q Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~--------------~~~~~~~~~~~~~~~-~~~~~s~~ 155 (221)
|||++++.||+.+ ..|+..+....++.|+++|+||+|+.+. ....+..+++...++ .|++|||+
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk 162 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 162 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcC
Confidence 9999999999997 7999999887788999999999998531 233467788888885 89999999
Q ss_pred CCCC-hHHHHHHHHHHHh
Q 027607 156 SNYN-FEKPFLYLARKLA 172 (221)
Q Consensus 156 ~~~g-v~~~~~~l~~~l~ 172 (221)
+|.| ++++|..++++..
T Consensus 163 ~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 163 QSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 9998 9999999998654
No 16
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.3e-34 Score=192.19 Aligned_cols=162 Identities=33% Similarity=0.590 Sum_probs=152.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (221)
.++.+|+|++|+|||+|+.++..+.|...|..++|.++...++.+++..+.++|||++|+++++.+...|++..+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc--HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607 93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~ 170 (221)
||+++.+||.+++.|++.+...++..|-++|+||.|.+++... .++..++...++.+|++|++.+.+++.+|..|.+.
T Consensus 88 YDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred EECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999887654 46778999999999999999999999999999998
Q ss_pred HhCC
Q 027607 171 LAGD 174 (221)
Q Consensus 171 l~~~ 174 (221)
+.+.
T Consensus 168 vl~~ 171 (198)
T KOG0079|consen 168 VLQA 171 (198)
T ss_pred HHHH
Confidence 7653
No 17
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=8.6e-33 Score=203.00 Aligned_cols=161 Identities=31% Similarity=0.535 Sum_probs=138.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
..+||+++|++|||||||+++++.+.+...+.++.+..+ .....+++..+.+.+|||+|++.++.++..+++++|++++
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 458999999999999999999999999888888988554 3455678888999999999999999999999999999999
Q ss_pred EEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc--------------ccHHHHHHHhhcC-CeEEEeccc
Q 027607 92 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEISAK 155 (221)
Q Consensus 92 v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~--------------~~~~~~~~~~~~~-~~~~~~s~~ 155 (221)
|||++++.||+.+. .|...+....++.|+++|+||.|+.+.. ...+...++...+ +.++++||+
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 99999999999996 5888777666789999999999986431 1234556777777 589999999
Q ss_pred CCCChHHHHHHHHHHHhC
Q 027607 156 SNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 156 ~~~gv~~~~~~l~~~l~~ 173 (221)
+|.|++++|.++++.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999998765
No 18
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.2e-32 Score=199.76 Aligned_cols=159 Identities=23% Similarity=0.389 Sum_probs=139.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (221)
++||+++|++|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 47999999999999999999999999888888887554 45677788889999999999999999999999999999999
Q ss_pred EECCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCcCCc--------------cccHHHHHHHhhcCC-eEEEecccC
Q 027607 93 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYEISAKS 156 (221)
Q Consensus 93 ~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~--------------~~~~~~~~~~~~~~~-~~~~~s~~~ 156 (221)
||++++.||+.+ ..|+..+....++.|+++|+||+|+.+. ....+..+++...++ .|+++||++
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 999999999995 7899999887789999999999998531 233466788888886 799999999
Q ss_pred CCC-hHHHHHHHHHHHh
Q 027607 157 NYN-FEKPFLYLARKLA 172 (221)
Q Consensus 157 ~~g-v~~~~~~l~~~l~ 172 (221)
|.| ++++|..++++..
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 995 9999999998643
No 19
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.1e-32 Score=206.29 Aligned_cols=168 Identities=20% Similarity=0.323 Sum_probs=145.2
Q ss_pred CCcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccc
Q 027607 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85 (221)
Q Consensus 6 ~~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~ 85 (221)
+..-....+||+++|++|||||||+++|+.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..++++
T Consensus 6 ~~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ 84 (232)
T cd04174 6 IPQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSD 84 (232)
T ss_pred cCcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCC
Confidence 333445789999999999999999999999999888889988665 4457778888999999999999999999999999
Q ss_pred ccEEEEEEECCChhhhcc-HHHHHHHHHhhcCCCCEEEEEeCCCcCC-------------cc-ccHHHHHHHhhcCC-eE
Q 027607 86 GQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQ-VKAKQVTFHRKKNL-QY 149 (221)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~-~~~~~~~~~~~~~~-~~ 149 (221)
++++++|||+++..+|+. +..|+..+....++.|+++|+||+|+.. +. ...+...++...++ .|
T Consensus 85 ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~ 164 (232)
T cd04174 85 SDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVY 164 (232)
T ss_pred CcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEE
Confidence 999999999999999998 4789999987777899999999999853 22 23467788999998 69
Q ss_pred EEecccCCC-ChHHHHHHHHHHHhCC
Q 027607 150 YEISAKSNY-NFEKPFLYLARKLAGD 174 (221)
Q Consensus 150 ~~~s~~~~~-gv~~~~~~l~~~l~~~ 174 (221)
++|||++|. |++++|..++..+.+.
T Consensus 165 ~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 165 LECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred EEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 999999997 8999999999987653
No 20
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-33 Score=192.34 Aligned_cols=215 Identities=77% Similarity=1.214 Sum_probs=203.1
Q ss_pred CCCCCCCcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccc
Q 027607 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (221)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~ 80 (221)
|.+|+.. .+.++++++|..|.||||++++.+.+.+...+.++.|...++.....+.+.+++..|||.|++.+..+..
T Consensus 1 M~~p~~~---~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrd 77 (216)
T KOG0096|consen 1 MTSPPQQ---GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRD 77 (216)
T ss_pred CCCCccc---cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeeccccc
Confidence 6666654 7789999999999999999999999999999999999999998887777789999999999999999999
Q ss_pred cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCCh
Q 027607 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv 160 (221)
.|+-+..+.+++||++......++..|...+...+.++|+++++||.|...+....+...+....++.|++.|++++.+.
T Consensus 78 gyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 78 GYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNF 157 (216)
T ss_pred ccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEeeccccccc
Confidence 99999999999999999999999999999999999899999999999999888777888888999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCCCCCCc
Q 027607 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDD 218 (221)
Q Consensus 161 ~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (221)
..-|.|+++.+..+|.+.++..|.+.|++...+...+++.++.+...+.++++++||+
T Consensus 158 ekPFl~LarKl~G~p~Lefva~paLaPpev~~d~~~~~q~e~dl~~a~t~~lp~ed~~ 215 (216)
T KOG0096|consen 158 ERPFLWLARKLTGDPSLEFVAMPALAPPEVIMDYWLQRQHEHDLAEAQTTALPDEDDK 215 (216)
T ss_pred ccchHHHhhhhcCCCCeEEEeccccCCCeeeccchhhHHHHHHHHHHhccCCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999983
No 21
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=4.4e-32 Score=195.21 Aligned_cols=161 Identities=34% Similarity=0.555 Sum_probs=141.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (221)
.+||+++|++|||||||++++..+.+...+.++.+.+.......+++..+.+.+||++|++.+...+..++++++++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999988888888888888777777888889999999999999999999999999999999
Q ss_pred EECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
||++++.+|+.+..|+..+.... ++.|+++|+||+|+.... . ..+...++...++.++++||++|.|+.++|.++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876653 578999999999986543 2 34556777778899999999999999999999998
Q ss_pred HHhC
Q 027607 170 KLAG 173 (221)
Q Consensus 170 ~l~~ 173 (221)
.+.+
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 8754
No 22
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.5e-32 Score=200.87 Aligned_cols=163 Identities=34% Similarity=0.593 Sum_probs=141.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec-CcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (221)
+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.++ +..+.+.+|||+|++.+..++..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999998888888899888777777777 7789999999999999999999999999999999
Q ss_pred EECCChhhhccHHHHHHHHHhh-----cCCCCEEEEEeCCCcCC--ccccHHHHHHHhhcC-CeEEEecccCCCChHHHH
Q 027607 93 FDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKN--RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~-----~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~-~~~~~~s~~~~~gv~~~~ 164 (221)
||++++.+|+.+..|+..+... ..+.|+++|+||+|+.+ .....+...++...+ ..++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 9999999999999998877643 14789999999999963 333445567777777 689999999999999999
Q ss_pred HHHHHHHhCCCC
Q 027607 165 LYLARKLAGDPN 176 (221)
Q Consensus 165 ~~l~~~l~~~~~ 176 (221)
++|++.+.....
T Consensus 161 ~~l~~~l~~~~~ 172 (201)
T cd04107 161 RFLVKNILANDK 172 (201)
T ss_pred HHHHHHHHHhch
Confidence 999998876543
No 23
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=5.4e-32 Score=197.10 Aligned_cols=161 Identities=24% Similarity=0.405 Sum_probs=139.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|++|||||||+++++.+.+...+.++.|.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998889999998888778888888899999999999999999999999999999999
Q ss_pred ECCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCcCCc-------cccHHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-------QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~ 165 (221)
|++++.+|..+..|+..+..... ..| ++|+||+|+... ....+...++...++.++++||++|.|++++|.
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999998876543 455 688999998421 122334467777789999999999999999999
Q ss_pred HHHHHHhCCC
Q 027607 166 YLARKLAGDP 175 (221)
Q Consensus 166 ~l~~~l~~~~ 175 (221)
++++.+..-+
T Consensus 160 ~l~~~l~~~~ 169 (182)
T cd04128 160 IVLAKAFDLP 169 (182)
T ss_pred HHHHHHHhcC
Confidence 9999886543
No 24
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1.4e-31 Score=191.63 Aligned_cols=159 Identities=31% Similarity=0.527 Sum_probs=138.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|.+|||||||+++++.+.+.+...++.+.+.......+++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999888777777777777777777888899999999999999999999999999999999
Q ss_pred ECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
|++++.++..+..|+..+....++.|+++|+||+|+... ...+...++...+++++++|+++|.|+.++|+.+++.+..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS-VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh-HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998776678999999999998543 2233445666678899999999999999999999987654
No 25
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1.3e-31 Score=193.65 Aligned_cols=161 Identities=30% Similarity=0.494 Sum_probs=138.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (221)
.+||+|+|.+|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 48999999999999999999999998877788887444 44567778888999999999999999999999999999999
Q ss_pred EECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 93 FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
||++++.+|..+..|+..+... ..+.|+++|+||+|+.+. .+. .+...++...+++++++||++|.|++++|++|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 9999999999999888777654 257999999999998543 333 345577777889999999999999999999999
Q ss_pred HHHhCC
Q 027607 169 RKLAGD 174 (221)
Q Consensus 169 ~~l~~~ 174 (221)
+.+...
T Consensus 161 ~~~~~~ 166 (172)
T cd04141 161 REIRRK 166 (172)
T ss_pred HHHHHh
Confidence 987753
No 26
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.7e-31 Score=193.44 Aligned_cols=157 Identities=25% Similarity=0.433 Sum_probs=133.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|.+|||||||+++++.+.+...+.++.+..+. ....+++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999998888888875553 44566777889999999999999999999999999999999
Q ss_pred ECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc-------------c-cHHHHHHHhhcC-CeEEEecccCC
Q 027607 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKN-LQYYEISAKSN 157 (221)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~-~~~~~~~~~~~~-~~~~~~s~~~~ 157 (221)
|++++.+|+.+. .|...+....++.|+++|+||+|+.+.. + ..+...++...+ +.++++||++|
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 999999999986 5888887766789999999999985421 1 223345566665 68999999999
Q ss_pred CChHHHHHHHHHHH
Q 027607 158 YNFEKPFLYLARKL 171 (221)
Q Consensus 158 ~gv~~~~~~l~~~l 171 (221)
.|++++|+.++.+.
T Consensus 161 ~~v~~~f~~~~~~~ 174 (175)
T cd01874 161 KGLKNVFDEAILAA 174 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998853
No 27
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1.4e-31 Score=191.53 Aligned_cols=157 Identities=28% Similarity=0.542 Sum_probs=138.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|++|||||||+++++.+.+.+.+.++.+.++....+.+.+..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888889888887777788877889999999999999988899999999999999
Q ss_pred ECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~ 170 (221)
|++++.+|+.+..|+..+.... .+.|+++|+||.|+.... ...+...++...+++++++||++|.|++++|.+|++.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 9999999999999999887655 378999999999986433 2345666777788999999999999999999999874
No 28
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=2.7e-31 Score=196.39 Aligned_cols=165 Identities=32% Similarity=0.554 Sum_probs=145.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 46999999999999999999999988877888898888877777777778899999999999999999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc--cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
|||++++.+|+.+..|+..+.......|+++|+||+|+.+... ..+...++...++.++++|+++|.|+.++|++|.+
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~ 164 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITE 164 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHH
Confidence 9999999999999999999887777899999999999865432 23455667777899999999999999999999999
Q ss_pred HHhCCCC
Q 027607 170 KLAGDPN 176 (221)
Q Consensus 170 ~l~~~~~ 176 (221)
.+.....
T Consensus 165 ~~~~~~~ 171 (199)
T cd04110 165 LVLRAKK 171 (199)
T ss_pred HHHHhhh
Confidence 8876543
No 29
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=2.5e-31 Score=191.42 Aligned_cols=162 Identities=30% Similarity=0.578 Sum_probs=142.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
..+||+++|++|||||||++++..+.+...+.++.+.++....+.+.+..+.+.+||++|++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 45899999999999999999999999988889999988877777788888899999999999988888889999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
|||++++.+|..+..|+..+.... .+.|+++|+||+|+.+.. ...+...++...+++++++|+++|.|++++|+++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999999887654 478999999999997432 22345567777888999999999999999999999
Q ss_pred HHHhC
Q 027607 169 RKLAG 173 (221)
Q Consensus 169 ~~l~~ 173 (221)
+.+..
T Consensus 162 ~~~~~ 166 (167)
T cd01867 162 KDIKK 166 (167)
T ss_pred HHHHh
Confidence 98754
No 30
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=2.9e-31 Score=190.92 Aligned_cols=160 Identities=33% Similarity=0.611 Sum_probs=140.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (221)
.+||+++|++|||||||+++++.+.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999998888777788888887777777787788999999999999988889999999999999
Q ss_pred EECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
||++++.+|..+..|+..+.... .+.|+++|+||+|+.... . ..+...++...+++++++|+++|.|+.++|.+|++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999887665 578999999999985432 2 24455677778899999999999999999999999
Q ss_pred HHh
Q 027607 170 KLA 172 (221)
Q Consensus 170 ~l~ 172 (221)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 775
No 31
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=3.1e-31 Score=190.60 Aligned_cols=159 Identities=28% Similarity=0.573 Sum_probs=138.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|++|||||||++++..+.+...+.++.+.++.......++..+.+.+||++|++.+..++..++++++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988888888887777666666777789999999999999999999999999999999
Q ss_pred ECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~ 170 (221)
|+++..+++.+..|+..+.... ...|+++|+||+|+.+.. ...+...++...+++++++|+++|.|+.++|+++++.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999887664 478999999999986533 2344556677778899999999999999999999986
Q ss_pred Hh
Q 027607 171 LA 172 (221)
Q Consensus 171 l~ 172 (221)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 54
No 32
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-32 Score=183.40 Aligned_cols=167 Identities=29% Similarity=0.549 Sum_probs=152.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
..+|++++|+.|+|||+|+++++.+.+.....+++|+++....+.+.++.+.++||||+|++++++..+.||+.+-+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
|||++++++|+.+..|+...+... +++-+++++||.|+.+. ++. .++..++.+..+.+.++|+++|+++++.|...+
T Consensus 88 VYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~ 167 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA 167 (214)
T ss_pred EEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHH
Confidence 999999999999999999987654 57888999999999653 333 466789999999999999999999999999999
Q ss_pred HHHhCCCCCc
Q 027607 169 RKLAGDPNLH 178 (221)
Q Consensus 169 ~~l~~~~~~~ 178 (221)
+.+...-+.-
T Consensus 168 ~tIl~kIE~G 177 (214)
T KOG0086|consen 168 RTILNKIESG 177 (214)
T ss_pred HHHHHHHhhc
Confidence 9987765433
No 33
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-32 Score=181.72 Aligned_cols=167 Identities=28% Similarity=0.559 Sum_probs=151.8
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d 87 (221)
.++.. +|++|+|+..+|||||+.+++...+.+.+..+.|.++..+++....+.+.+++|||+|+++++.+...|+++++
T Consensus 17 nFDym-fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgam 95 (193)
T KOG0093|consen 17 NFDYM-FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAM 95 (193)
T ss_pred cccce-eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccc
Confidence 34444 69999999999999999999999999999999999999998888888999999999999999999999999999
Q ss_pred EEEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCccc-c-HHHHHHHhhcCCeEEEecccCCCChHHHH
Q 027607 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV-K-AKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~-~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~ 164 (221)
++|++||++|.+||..+..|...+..++ .+.|+|+|+||+|+..++. . +....++..+|+.|+++|++.+.+++.+|
T Consensus 96 gfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~F 175 (193)
T KOG0093|consen 96 GFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVF 175 (193)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHH
Confidence 9999999999999999999999998776 6899999999999976543 3 45668999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 027607 165 LYLARKLAGDP 175 (221)
Q Consensus 165 ~~l~~~l~~~~ 175 (221)
+.+...+....
T Consensus 176 e~lv~~Ic~km 186 (193)
T KOG0093|consen 176 ERLVDIICDKM 186 (193)
T ss_pred HHHHHHHHHHh
Confidence 99998876544
No 34
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=2.8e-31 Score=193.44 Aligned_cols=162 Identities=31% Similarity=0.554 Sum_probs=140.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec----------CcEEEEEEEecCCcccccccccc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN----------CGKIRFYCWDTAGQEKFGGLRDG 81 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~~D~~g~~~~~~~~~~ 81 (221)
+.+||+++|++|||||||++++..+.+...+.++.+.++......+. +..+.+.+||++|++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 56999999999999999999999999988888898877776655544 35688999999999999999999
Q ss_pred ccccccEEEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCC
Q 027607 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSN 157 (221)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~ 157 (221)
+++++|++++|||++++.+|..+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...+++++++||++|
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~ 162 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG 162 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 9999999999999999999999999999887653 57899999999998653 22 23456778888899999999999
Q ss_pred CChHHHHHHHHHHHhC
Q 027607 158 YNFEKPFLYLARKLAG 173 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~ 173 (221)
.|++++|++|++.+.+
T Consensus 163 ~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 163 TNVEKAVERLLDLVMK 178 (180)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987754
No 35
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=3.2e-31 Score=190.78 Aligned_cols=159 Identities=26% Similarity=0.539 Sum_probs=139.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|++|||||||+++++.+.+...+.++.+.++....+.+.+..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888899998888888888888899999999999988888899999999999999
Q ss_pred ECCChhhhccHHHHHHHHHhhc------CCCCEEEEEeCCCcCC-cc-ccHHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRVC------ENIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~------~~~p~ivv~nK~D~~~-~~-~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~ 165 (221)
|++++.++..+..|+..+.... .+.|+++|+||+|+.+ .. ...+...++...+++++++|+++|.|+.++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 9999999999999999887654 3689999999999863 22 23344456777788999999999999999999
Q ss_pred HHHHHHh
Q 027607 166 YLARKLA 172 (221)
Q Consensus 166 ~l~~~l~ 172 (221)
+|.+.+.
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998875
No 36
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=4.3e-31 Score=193.80 Aligned_cols=163 Identities=28% Similarity=0.527 Sum_probs=139.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+++||+++|++|||||||+++++.+.+...+.++.+.++ ...+.+++..+.+.+|||+|++.+..++..+++.+++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 4679999999999999999999999988777888887555 456677888889999999999999999999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~ 166 (221)
+|||++++.+|+.+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|+.++|.+
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 9999999999999999998886653 47899999999998543 22 23445566667889999999999999999999
Q ss_pred HHHHHhCC
Q 027607 167 LARKLAGD 174 (221)
Q Consensus 167 l~~~l~~~ 174 (221)
|++.+...
T Consensus 162 l~~~l~~~ 169 (189)
T PTZ00369 162 LVREIRKY 169 (189)
T ss_pred HHHHHHHH
Confidence 99987653
No 37
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=4.7e-31 Score=191.01 Aligned_cols=156 Identities=28% Similarity=0.499 Sum_probs=132.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+|+|.+|||||||+.+++.+.+...+.++.+ ..+.....+++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 7999999999999999999999999888888876 344445667778899999999999999999999999999999999
Q ss_pred ECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc--------------ccHHHHHHHhhcC-CeEEEecccCC
Q 027607 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEISAKSN 157 (221)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~--------------~~~~~~~~~~~~~-~~~~~~s~~~~ 157 (221)
|++++.+|..+. .|+..+....++.|+++|+||+|+.+.. ...+...++...+ +.++++||++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 999999999986 6888777666789999999999985421 2234456676777 48999999999
Q ss_pred CChHHHHHHHHHH
Q 027607 158 YNFEKPFLYLARK 170 (221)
Q Consensus 158 ~gv~~~~~~l~~~ 170 (221)
.|++++|+.+++.
T Consensus 161 ~~i~~~f~~l~~~ 173 (174)
T cd01871 161 KGLKTVFDEAIRA 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999874
No 38
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-31 Score=188.99 Aligned_cols=168 Identities=30% Similarity=0.486 Sum_probs=155.3
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
.-.+.|||+++|++|+|||-|+.++..+.|.....+|+|++..+....++++.+..+||||+|+++++.+...||+.+-+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCC--ccccHHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN--RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~ 165 (221)
+++|||++...+|+++..|+.+++.+. +++++++|+||+|+.. ....++...++...+..++++||+.+.++.++|.
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~ 169 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFE 169 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHH
Confidence 999999999999999999999999987 6899999999999976 3345567789999999999999999999999999
Q ss_pred HHHHHHhCCCC
Q 027607 166 YLARKLAGDPN 176 (221)
Q Consensus 166 ~l~~~l~~~~~ 176 (221)
.+...++..-.
T Consensus 170 ~~l~~I~~~vs 180 (222)
T KOG0087|consen 170 RVLTEIYKIVS 180 (222)
T ss_pred HHHHHHHHHHH
Confidence 99998876443
No 39
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.98 E-value=6.9e-31 Score=195.70 Aligned_cols=162 Identities=23% Similarity=0.422 Sum_probs=138.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (221)
++||+|+|++|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 479999999999999999999999998888899886554 5667788889999999999999999999999999999999
Q ss_pred EECCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCcCCc--------------cccHHHHHHHhhcCC-eEEEecccC
Q 027607 93 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYEISAKS 156 (221)
Q Consensus 93 ~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~--------------~~~~~~~~~~~~~~~-~~~~~s~~~ 156 (221)
||++++.+|+.+ ..|...+....++.|+++|+||+|+.+. ...++...++...++ .|++|||++
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999998 4677777666778999999999998542 122355677778885 899999999
Q ss_pred CC-ChHHHHHHHHHHHhCCC
Q 027607 157 NY-NFEKPFLYLARKLAGDP 175 (221)
Q Consensus 157 ~~-gv~~~~~~l~~~l~~~~ 175 (221)
+. |++++|..++++.+...
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 160 SERSVRDVFHVATVASLGRG 179 (222)
T ss_pred CCcCHHHHHHHHHHHHHhcc
Confidence 88 59999999999876643
No 40
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.98 E-value=5.9e-31 Score=189.84 Aligned_cols=159 Identities=28% Similarity=0.466 Sum_probs=138.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (221)
||+++|.+|||||||+++++.+.+...+.++.+.++......+.+..+.+.+|||+|++.+..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988899999988877777888888999999999999999999999999999999999
Q ss_pred CCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCccc----cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
+++..++..+..|+..+.... ...|+++|+||.|+.+... ..+...++...+..++++||++|.|+.++|+.|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999876542 3467999999999854321 2234456667788999999999999999999999
Q ss_pred HHHhC
Q 027607 169 RKLAG 173 (221)
Q Consensus 169 ~~l~~ 173 (221)
+.+..
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 97754
No 41
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.98 E-value=5.2e-31 Score=188.92 Aligned_cols=158 Identities=31% Similarity=0.571 Sum_probs=133.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (221)
++||+++|++|||||||+++++.+.+...+.++.+ ..+.....+++..+.+.+|||+|++.+..++..++++++++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 47999999999999999999999888777777776 34445566777788999999999999999999999999999999
Q ss_pred EECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
||+++..+++.+..|+..+.... .+.|+++|+||+|+.+. ... .+...++...+.+++++||++|.|+.++|.+|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988886643 47899999999998642 222 234456666678999999999999999999998
Q ss_pred HHH
Q 027607 169 RKL 171 (221)
Q Consensus 169 ~~l 171 (221)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 754
No 42
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.98 E-value=7.1e-31 Score=188.11 Aligned_cols=158 Identities=36% Similarity=0.701 Sum_probs=145.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (221)
||+|+|++|||||||+++|..+.+...+.++.+.+.......+++..+.+.+||++|++.+..++..+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999988888889999999999999
Q ss_pred CCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCcCC-cccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHH
Q 027607 95 VTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l 171 (221)
++++.||+.+..|+..+..... ..|+++|+||.|+.+ +.+. .+...++...+.+|+++|++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999988876 699999999999876 3333 456788899999999999999999999999999976
Q ss_pred h
Q 027607 172 A 172 (221)
Q Consensus 172 ~ 172 (221)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 4
No 43
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.98 E-value=6.9e-31 Score=188.60 Aligned_cols=159 Identities=30% Similarity=0.547 Sum_probs=135.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (221)
++||+++|.+|||||||+++++.+.+...+.++.+..+ .....+.+..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 47999999999999999999998888777778877544 35566777788999999999999999999999999999999
Q ss_pred EECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcc-cc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
||+++..+|+.+..|+..+.... .+.|+++|+||+|+.+.. .. .+...++...+++++++||++|.|++++|.+|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999988886542 579999999999996533 22 233456677788999999999999999999999
Q ss_pred HHHh
Q 027607 169 RKLA 172 (221)
Q Consensus 169 ~~l~ 172 (221)
+.+.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 8653
No 44
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.98 E-value=7.2e-31 Score=188.06 Aligned_cols=157 Identities=31% Similarity=0.674 Sum_probs=137.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec--CcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
+||+++|++|||||||+++++.+.+...+.++.+.++......+. +..+.+.+|||||++.+...+..++++++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999988888888888888776666666 678899999999999999999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
|||++++.++..+..|+..+.....+.|+++|+||+|+... ... .+...++...+++++++|+++|.|++++|.+|+.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999988777778999999999998643 323 3455677778899999999999999999999876
Q ss_pred H
Q 027607 170 K 170 (221)
Q Consensus 170 ~ 170 (221)
.
T Consensus 161 ~ 161 (162)
T cd04106 161 K 161 (162)
T ss_pred h
Confidence 4
No 45
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.98 E-value=1.4e-30 Score=190.99 Aligned_cols=159 Identities=31% Similarity=0.500 Sum_probs=133.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
.||+++|++|||||||+++|+.+.+...+.++.+..+. ....+++..+.+.+|||+|++.+..++..+++.++++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999988877888775543 44556777789999999999999999999999999999999
Q ss_pred ECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCccc--------------cHHHHHHHhhcC-CeEEEecccCC
Q 027607 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KAKQVTFHRKKN-LQYYEISAKSN 157 (221)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------------~~~~~~~~~~~~-~~~~~~s~~~~ 157 (221)
|++++.+|+.+. .|+..+.....+.|+++|+||+|+.+... ..+...++...+ +.++++||++|
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 999999999886 58888877767899999999999865321 123345555555 78999999999
Q ss_pred CChHHHHHHHHHHHhC
Q 027607 158 YNFEKPFLYLARKLAG 173 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~ 173 (221)
.|++++|.+|++.+..
T Consensus 160 ~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 160 RGVNEAFTEAARVALN 175 (189)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999998764
No 46
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.97 E-value=1.8e-30 Score=185.76 Aligned_cols=158 Identities=30% Similarity=0.561 Sum_probs=134.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (221)
++||+++|++|||||||+++++.+.+...+.++.+..+ .....+++..+.+.+|||+|++.+..++..+++.++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 47999999999999999999999888777777776443 45566777778899999999999999999999999999999
Q ss_pred EECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
||+++..++..+..|+..+.... .+.|+++|+||+|+.++... .+...++...+++++++|+++|.|++++|++|++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999988888877653 47899999999998764433 3445666677889999999999999999999987
Q ss_pred HH
Q 027607 170 KL 171 (221)
Q Consensus 170 ~l 171 (221)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 54
No 47
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.97 E-value=1.9e-30 Score=186.48 Aligned_cols=160 Identities=33% Similarity=0.575 Sum_probs=139.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
..+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 35899999999999999999999888877788888888888888888878899999999999988888999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCcCCc-c-ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-Q-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~-~-~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
|||+++..++..+..|+..+..... +.|+++|+||.|+... . ...+...++...++.++++||++|.|++++|++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999998877654 5899999999998653 2 23344566667788999999999999999999998
Q ss_pred HHH
Q 027607 169 RKL 171 (221)
Q Consensus 169 ~~l 171 (221)
..+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 48
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.97 E-value=1.7e-30 Score=186.29 Aligned_cols=158 Identities=30% Similarity=0.550 Sum_probs=133.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (221)
++||+++|.+|||||||+++++.+.+...+.++.+ ..+.....+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 48999999999999999999999988877777765 44556677777788899999999999999999999999999999
Q ss_pred EECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
||+++..+|..+..|+..+.... .+.|+++|+||+|+... ... .+...++...+++++++||++|.|+.++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988887653 58999999999998542 222 234455566678999999999999999999998
Q ss_pred HHH
Q 027607 169 RKL 171 (221)
Q Consensus 169 ~~l 171 (221)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 754
No 49
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-31 Score=179.64 Aligned_cols=164 Identities=34% Similarity=0.606 Sum_probs=146.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
..|||+++|..|+|||+|++++..|.|++-...++|+++..+++.+++..+.+++|||+|+++++++...|++.++++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cccHH-HHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
|||++...+|..+..|+.++..+. .++-.|+|+||+|+.++ .+++. ...+.......|.++|++...+++++|..++
T Consensus 86 vydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLA 165 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHH
Confidence 999999999999999999998875 45566899999999775 34433 3356666677789999999999999999999
Q ss_pred HHHhCCC
Q 027607 169 RKLAGDP 175 (221)
Q Consensus 169 ~~l~~~~ 175 (221)
..+....
T Consensus 166 ~rli~~a 172 (213)
T KOG0095|consen 166 CRLISEA 172 (213)
T ss_pred HHHHHHH
Confidence 8876544
No 50
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=2.4e-30 Score=185.96 Aligned_cols=159 Identities=33% Similarity=0.604 Sum_probs=136.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
+.+||+++|++|||||||++++..+.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999888887778888877777777778777899999999999888888999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-cc-HHHHHHHhhcCC-eEEEecccCCCChHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~~-~~~~~~~~~~~~-~~~~~s~~~~~gv~~~~~~l 167 (221)
|||++++.+++.+..|+..+.... .+.|+++|+||+|+.... .. .+...++...+. .++++|+++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 999999999999999999887653 578999999999986532 22 344556666654 68999999999999999999
Q ss_pred HHH
Q 027607 168 ARK 170 (221)
Q Consensus 168 ~~~ 170 (221)
++.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 875
No 51
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=2.6e-30 Score=193.27 Aligned_cols=161 Identities=30% Similarity=0.510 Sum_probs=139.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecC-cEEEEEEEecCCccccccccccccccccEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (221)
+||+++|++|||||||+++|+.+.+...+.++.+.+.+.....+++ ..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999998888889999888877777764 478999999999999888999999999999999
Q ss_pred EECCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCcCC-cccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607 93 FDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~ 166 (221)
||++++.+|+.+..|+..+.... ...|+++|+||+|+.. +... .+...++...++.++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999887653 2468999999999863 3333 3445677778889999999999999999999
Q ss_pred HHHHHhCC
Q 027607 167 LARKLAGD 174 (221)
Q Consensus 167 l~~~l~~~ 174 (221)
|++.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99988754
No 52
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.97 E-value=5.6e-30 Score=188.63 Aligned_cols=162 Identities=27% Similarity=0.478 Sum_probs=139.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCC-cccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (221)
+||+|+|++|||||||+++|+.+.+.. .+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988864 6788888877777788888889999999999999888888899999999999
Q ss_pred EECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc-----cc-HHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607 93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~ 166 (221)
||+++..+++.+..|+..+.....+.|+++|+||+|+.... .. .+...++...++.++++|+++|.|++++|++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 160 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQK 160 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999887766689999999999985321 11 2344566667788999999999999999999
Q ss_pred HHHHHhCCC
Q 027607 167 LARKLAGDP 175 (221)
Q Consensus 167 l~~~l~~~~ 175 (221)
|++.+...+
T Consensus 161 i~~~~~~~~ 169 (193)
T cd04118 161 VAEDFVSRA 169 (193)
T ss_pred HHHHHHHhc
Confidence 999887654
No 53
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=3e-30 Score=189.30 Aligned_cols=162 Identities=32% Similarity=0.591 Sum_probs=140.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+|+|++|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999887778889888887777788878889999999999999889999999999999999
Q ss_pred ECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~ 170 (221)
|++++.+|..+..|+..+.... ...|+++|+||.|+.+.. . ......++...+++++++|+++|.|++++|.+|++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999887654 468999999999986432 2 234456667778899999999999999999999999
Q ss_pred HhCCC
Q 027607 171 LAGDP 175 (221)
Q Consensus 171 l~~~~ 175 (221)
+....
T Consensus 161 ~~~~~ 165 (188)
T cd04125 161 IIKRL 165 (188)
T ss_pred HHHHh
Confidence 87643
No 54
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.97 E-value=4.5e-30 Score=185.06 Aligned_cols=162 Identities=31% Similarity=0.557 Sum_probs=140.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
..+||+|+|++|||||||+++++.+.+...+.++.+.+.........+....+.+||++|++.+..++..+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999999888877778888888887888888888899999999999988888889999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
|+|++++.++..+..|+..+.... ++.|+++|+||.|+.+. .. ..+...++...++.++++|+.++.|+.++|.+++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~ 162 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTA 162 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999999887653 68999999999998642 22 3344566777789999999999999999999999
Q ss_pred HHHhC
Q 027607 169 RKLAG 173 (221)
Q Consensus 169 ~~l~~ 173 (221)
+.+.+
T Consensus 163 ~~~~~ 167 (168)
T cd01866 163 KEIYE 167 (168)
T ss_pred HHHHh
Confidence 87643
No 55
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.97 E-value=3.9e-30 Score=185.71 Aligned_cols=159 Identities=32% Similarity=0.625 Sum_probs=137.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
..+||+++|++|||||||+++++.+.+...+.++.+.+.....+.+++..+.+.+||++|++.+..++..+++.+|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 56999999999999999999999998888778888877777777888888999999999999999999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCcCCcccc-HHHHHHHhhcC-CeEEEecccCCCChHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKN-LQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~-~~~~~~s~~~~~gv~~~~ 164 (221)
|||+++..+++.+..|...+.... .+.|+++|+||+|+..+... .+..+++...+ ..++++||++|.|+.++|
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~ 163 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAF 163 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHH
Confidence 999999999999999988776543 36899999999998754433 34556666666 579999999999999999
Q ss_pred HHHHHH
Q 027607 165 LYLARK 170 (221)
Q Consensus 165 ~~l~~~ 170 (221)
.++++.
T Consensus 164 ~~~~~~ 169 (170)
T cd04116 164 EEAVRR 169 (170)
T ss_pred HHHHhh
Confidence 999875
No 56
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=4.1e-30 Score=192.14 Aligned_cols=172 Identities=32% Similarity=0.525 Sum_probs=146.8
Q ss_pred CCCCCCCcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccc
Q 027607 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (221)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~ 80 (221)
|+.......+ ..+||+++|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++.
T Consensus 1 ~~~~~~~~~~-~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~ 79 (216)
T PLN03110 1 MAHRVDHEYD-YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITS 79 (216)
T ss_pred CCCCcccccC-ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHH
Confidence 4444444333 459999999999999999999998888777788999888888888888889999999999999999999
Q ss_pred cccccccEEEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCC
Q 027607 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSN 157 (221)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~ 157 (221)
.+++.++++++|||+++..+|+.+..|+..+.... .+.|+++|+||+|+.+. ... .....++...+++++++||++|
T Consensus 80 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g 159 (216)
T PLN03110 80 AYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEA 159 (216)
T ss_pred HHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 99999999999999999999999999998887664 47999999999998543 233 3445666778899999999999
Q ss_pred CChHHHHHHHHHHHhC
Q 027607 158 YNFEKPFLYLARKLAG 173 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~ 173 (221)
.|+.++|.+|++.+.+
T Consensus 160 ~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 160 TNVEKAFQTILLEIYH 175 (216)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998866
No 57
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=3.4e-30 Score=189.37 Aligned_cols=162 Identities=28% Similarity=0.580 Sum_probs=139.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccC-CcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (221)
+||+++|++|||||||++++..+.+. ..+.++.+.++......+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999888875 35677777777666677788889999999999999988888899999999999
Q ss_pred EECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCC-ccc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
||+++..+++.+..|+..+.... ...|+++|+||+|+.. +.. ..+...+....+++++++|+++|.|++++|.+|++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999998887765 4789999999999853 222 34455667777889999999999999999999999
Q ss_pred HHhCCC
Q 027607 170 KLAGDP 175 (221)
Q Consensus 170 ~l~~~~ 175 (221)
.+....
T Consensus 161 ~~~~~~ 166 (191)
T cd04112 161 ELKHRK 166 (191)
T ss_pred HHHHhc
Confidence 987764
No 58
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=3.8e-30 Score=191.55 Aligned_cols=164 Identities=27% Similarity=0.547 Sum_probs=140.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec-CcEEEEEEEecCCccccccccccccccccEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
+.+||+|+|++|||||||+++++.+.+...+.++.+.++....+.+. +..+.+.+|||+|++.+..++..+++++|+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 35899999999999999999999988877777888887777777664 55789999999999999888889999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~ 166 (221)
+|||++++.+|+.+..|+..+.... ...|+++|+||+|+.+. .. ..+...++...++.++++|+++|.|+.++|++
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999887653 35678999999998653 22 33455677778899999999999999999999
Q ss_pred HHHHHhCCC
Q 027607 167 LARKLAGDP 175 (221)
Q Consensus 167 l~~~l~~~~ 175 (221)
|++.+.+..
T Consensus 161 l~~~~~~~~ 169 (211)
T cd04111 161 LTQEIYERI 169 (211)
T ss_pred HHHHHHHHh
Confidence 999887653
No 59
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=4.2e-30 Score=183.95 Aligned_cols=157 Identities=32% Similarity=0.612 Sum_probs=138.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+|+|++|||||||+++++.+.+...+.++.+.++......+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888887889999999999988888899999999999999
Q ss_pred ECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~ 170 (221)
|+++..++..+..|+..+.... ++.|+++|+||.|+.... ...+...++...++.++++|++++.|+.++|.++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999999988876543 689999999999986432 2334556777778999999999999999999999875
No 60
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=3.7e-30 Score=188.65 Aligned_cols=162 Identities=30% Similarity=0.460 Sum_probs=135.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec-CcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (221)
+||+|+|++|||||||+++|+.+.+...+.++.+..+.. .+... +..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999998887777777655543 34444 5678999999999999988888899999999999
Q ss_pred EECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc------ccHHHHHHHhhcCC-eEEEecccCCCChHHHH
Q 027607 93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQVTFHRKKNL-QYYEISAKSNYNFEKPF 164 (221)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~------~~~~~~~~~~~~~~-~~~~~s~~~~~gv~~~~ 164 (221)
||+++..+|+.+. .|+..+.....+.|+++|+||.|+.... ...+..+++...++ .++++|+++|.|+.++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 159 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVF 159 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHH
Confidence 9999999999886 5887776666789999999999985432 23345567777777 89999999999999999
Q ss_pred HHHHHHHhCCCC
Q 027607 165 LYLARKLAGDPN 176 (221)
Q Consensus 165 ~~l~~~l~~~~~ 176 (221)
..+++.+.....
T Consensus 160 ~~l~~~~~~~~~ 171 (187)
T cd04132 160 DTAIEEALKKEG 171 (187)
T ss_pred HHHHHHHHhhhh
Confidence 999998877654
No 61
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=5.7e-30 Score=183.99 Aligned_cols=155 Identities=28% Similarity=0.453 Sum_probs=130.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|++|||||||+++++.+.+...+.++.+.++ ..........+.+.+|||+|++.+..++..+++.++++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988777777776444 334555667789999999999999888888899999999999
Q ss_pred ECCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCcCC-cccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
|+++..++..+..|+..+.... .+.|+++|+||+|+.+ +... .+...++...++.++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9999999999999987776542 5789999999999865 3333 34456667778899999999999999999998
Q ss_pred HH
Q 027607 168 AR 169 (221)
Q Consensus 168 ~~ 169 (221)
+.
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 75
No 62
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=2.9e-30 Score=189.57 Aligned_cols=161 Identities=32% Similarity=0.540 Sum_probs=134.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (221)
||+|+|.+|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||+|++.+..++..+++.+|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999888777777776443 3445667777889999999999999999999999999999999
Q ss_pred CCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCcCC-ccc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 95 VTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~-~~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
+++..+|+.+..|+..+.... .+.|+++|+||+|+.. +.. ..+...++...++.++++||++|.|++++|.+++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999988876543 4789999999999854 222 2344566677788999999999999999999999
Q ss_pred HHHhCCCC
Q 027607 169 RKLAGDPN 176 (221)
Q Consensus 169 ~~l~~~~~ 176 (221)
+.+.....
T Consensus 160 ~~l~~~~~ 167 (190)
T cd04144 160 RALRQQRQ 167 (190)
T ss_pred HHHHHhhc
Confidence 98865443
No 63
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=7.1e-30 Score=184.38 Aligned_cols=159 Identities=31% Similarity=0.592 Sum_probs=137.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccc-cccccccccccEEEE
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQCAII 91 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~-~~~~~~~~~~d~~i~ 91 (221)
.+||+++|++|||||||+++++.+.+...+.++.+.++....+.+.+..+.+.+||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999988887788888888888888888888999999999998776 567888999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcc-cc-HHHHHHHhhcCCeEEEecccC---CCChHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKS---NYNFEKPF 164 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~---~~gv~~~~ 164 (221)
|||++++.++..+..|+..+.... .+.|+++|+||+|+.+.. .. .....++...+++++++||++ +.++.++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999998887653 579999999999986533 22 344566777789999999998 89999999
Q ss_pred HHHHHHH
Q 027607 165 LYLARKL 171 (221)
Q Consensus 165 ~~l~~~l 171 (221)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998765
No 64
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=8.9e-30 Score=182.69 Aligned_cols=159 Identities=33% Similarity=0.572 Sum_probs=133.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
+.+||+++|++|||||||+++++.+.+...+.++.+.. ......+++..+.+.+|||||++++..++..+++.+|++++
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 35899999999999999999999888777767766633 34445677777899999999999999999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcc-cc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
|||+++..++..+..|+..+.... .+.|+++|+||+|+.... .. .+...++...+++++++||++|.|++++|++|
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 999999999999999988876542 578999999999986533 22 34456666778899999999999999999999
Q ss_pred HHHH
Q 027607 168 ARKL 171 (221)
Q Consensus 168 ~~~l 171 (221)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8754
No 65
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=1.2e-29 Score=183.81 Aligned_cols=157 Identities=29% Similarity=0.480 Sum_probs=132.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEEC
Q 027607 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (221)
Q Consensus 16 i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (221)
|+|+|++|||||||+++++.+.+...+.++.+.. +.....+++..+.+.+|||+|++.+..++..++..+|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 6899999999999999999998877777776544 334566777788999999999999999999999999999999999
Q ss_pred CChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc--------------ccHHHHHHHhhcCC-eEEEecccCCCC
Q 027607 96 TARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKNL-QYYEISAKSNYN 159 (221)
Q Consensus 96 ~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~--------------~~~~~~~~~~~~~~-~~~~~s~~~~~g 159 (221)
++..+|+.+. .|+..+....++.|+++|+||+|+.... ...+...++...+. .++++|+++|.|
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG 159 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 9999999886 5888887777799999999999985421 12234456777775 899999999999
Q ss_pred hHHHHHHHHHHHhC
Q 027607 160 FEKPFLYLARKLAG 173 (221)
Q Consensus 160 v~~~~~~l~~~l~~ 173 (221)
++++|..+++.+.+
T Consensus 160 v~~lf~~l~~~~~~ 173 (174)
T smart00174 160 VREVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987654
No 66
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.2e-29 Score=186.37 Aligned_cols=156 Identities=21% Similarity=0.390 Sum_probs=124.4
Q ss_pred ceEEEEEcCCCCcHHHHHH-HHhcCc-----cCCcccCCcce-eeeeeE--------EEecCcEEEEEEEecCCcccccc
Q 027607 13 SFKLVIVGDGGTGKTTFVK-RHLTGE-----FEKKYEPTIGV-EVHPLD--------FFTNCGKIRFYCWDTAGQEKFGG 77 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~i~~~D~~g~~~~~~ 77 (221)
.+||+++|..|||||||+. ++..+. +...+.+|.+. +.+... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5899999999999999995 554443 34455667652 222222 24677789999999999875 3
Q ss_pred ccccccccccEEEEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCC--------------------ccc-c
Q 027607 78 LRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN--------------------RQV-K 135 (221)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~--------------------~~~-~ 135 (221)
....+++++|++++|||++++.||+.+. .|+..+....++.|+++|+||+|+.+ +.+ .
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 4566899999999999999999999997 59888877667899999999999853 222 3
Q ss_pred HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607 136 AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 136 ~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~ 170 (221)
.+..+++...++.|++|||++|.|++++|+.++++
T Consensus 160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 45678888899999999999999999999999874
No 67
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=1.4e-29 Score=181.57 Aligned_cols=159 Identities=33% Similarity=0.604 Sum_probs=138.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (221)
++||+|+|++|||||||+++++.+.+...+.++.+.++......+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999888777788888778788888888889999999999988888888899999999999
Q ss_pred EECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-c-ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-Q-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~-~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
+|++++.++.....|+..+.... ...|+++++||+|+... . ...+...++...++.++++|+++|.|+.++|.+|++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998887665 57899999999998632 2 233445667777899999999999999999999998
Q ss_pred HH
Q 027607 170 KL 171 (221)
Q Consensus 170 ~l 171 (221)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 68
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=1.2e-29 Score=181.95 Aligned_cols=160 Identities=34% Similarity=0.690 Sum_probs=139.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|++|||||||+++++.+.+...+.++.+.++......+.+..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 68999999999999999999988887777788887777777778777789999999999988888899999999999999
Q ss_pred ECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~ 170 (221)
|++++.+++.+..|+..+..+. ++.|+++|+||+|+... ... .....++...++.++++|+.+|.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999998887765 68999999999998652 222 34556777788999999999999999999999987
Q ss_pred HhC
Q 027607 171 LAG 173 (221)
Q Consensus 171 l~~ 173 (221)
+..
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 643
No 69
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.97 E-value=1.3e-29 Score=181.93 Aligned_cols=158 Identities=30% Similarity=0.571 Sum_probs=132.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+|+|++|||||||+++++.+.+...+.++.+ +.......+++..+.+.+|||||++++..++..+++.++++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998888776666665 333455667777889999999999999999999999999999999
Q ss_pred ECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcc-cc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
|++++.+++.+..|...+.... .+.|+++|+||+|+.... .. .....++...+.+++++||++|.|++++|++|++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 9999999999999988776543 368999999999986532 22 3444666777899999999999999999999998
Q ss_pred HHh
Q 027607 170 KLA 172 (221)
Q Consensus 170 ~l~ 172 (221)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 654
No 70
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=1.3e-29 Score=188.68 Aligned_cols=163 Identities=32% Similarity=0.547 Sum_probs=142.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
..+||+|+|++|||||||+++++.+.+...+.++.+.++....+.+.+..+.+.+|||+|++.+..++..+++.+|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 46999999999999999999999888887778888888877778888888899999999999988888899999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
|||+++..++..+..|+..+.... ...|+++|+||+|+.... . ..+...++...++.++++|++++.|++++|++++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~ 164 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999988776543 578999999999986532 2 3455677778889999999999999999999999
Q ss_pred HHHhCC
Q 027607 169 RKLAGD 174 (221)
Q Consensus 169 ~~l~~~ 174 (221)
+.+.++
T Consensus 165 ~~~~~~ 170 (210)
T PLN03108 165 AKIYKK 170 (210)
T ss_pred HHHHHH
Confidence 988764
No 71
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=1.5e-29 Score=181.66 Aligned_cols=158 Identities=27% Similarity=0.542 Sum_probs=133.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC--ccCCcccCCcceeeeeeEEEec-CcEEEEEEEecCCccccccccccccccccEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
+||+++|++|||||||++++..+ .+...+.++.|.++......+. +..+.+.+|||+|++.+..++..++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999998765 5667788888888777666664 46789999999999988888889999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc-ccH-HHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~-~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
+|||+++..++..+..|+..+.....+.|+++|+||+|+.+.. ... +...+....++.++++|+.+|.|+.++|+.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLA 160 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHH
Confidence 9999999999999999998887766679999999999985432 222 23445566678899999999999999999999
Q ss_pred HHH
Q 027607 169 RKL 171 (221)
Q Consensus 169 ~~l 171 (221)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04101 161 RAF 163 (164)
T ss_pred HHh
Confidence 864
No 72
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=5.8e-29 Score=186.40 Aligned_cols=167 Identities=19% Similarity=0.297 Sum_probs=133.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccC-CcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccc-cccEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI-HGQCAII 91 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~-~~d~~i~ 91 (221)
+||+++|++|||||||+++|+.+.+. ..+.++.+.+.....+.+++....+.+|||+|++ ......++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999998888876 6666666656667777788888999999999987 223344556 8999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
|||++++.+|..+..|+..+.... .+.|+++|+||+|+.+. .+. .+...++...+++++++||++|.|++++|++|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999988886653 57999999999998543 222 23446666778899999999999999999999
Q ss_pred HHHHhCCCCCccccC
Q 027607 168 ARKLAGDPNLHFVES 182 (221)
Q Consensus 168 ~~~l~~~~~~~~~~e 182 (221)
++.+.......-..+
T Consensus 159 ~~~~~~~~~~~~~~~ 173 (221)
T cd04148 159 VRQIRLRRDSKEKNE 173 (221)
T ss_pred HHHHHhhhccccccC
Confidence 998864443333344
No 73
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=2.4e-29 Score=181.85 Aligned_cols=161 Identities=30% Similarity=0.624 Sum_probs=137.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|++|||||||++++..+.+...+.++.+.++......+.+..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999998887777788887777777778888889999999999988888899999999999999
Q ss_pred ECCChhhhccHHHHHHHHHhhcC-----CCCEEEEEeCCCcCC-cc-ccHHHHHHHhhcC-CeEEEecccCCCChHHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ivv~nK~D~~~-~~-~~~~~~~~~~~~~-~~~~~~s~~~~~gv~~~~~ 165 (221)
|++++.++.....|...+..... +.|+++|+||+|+.. .. ...+...++...+ ..++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999988888877655442 789999999999973 22 2334445656665 7899999999999999999
Q ss_pred HHHHHHhCC
Q 027607 166 YLARKLAGD 174 (221)
Q Consensus 166 ~l~~~l~~~ 174 (221)
+|.+.+.+.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999987765
No 74
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.97 E-value=2.8e-29 Score=186.95 Aligned_cols=155 Identities=29% Similarity=0.477 Sum_probs=128.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+|+|.+|||||||+++++.+.+.. +.++.+..+..... ..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998864 46677765544332 4678999999999999999999999999999999
Q ss_pred ECCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCcCC--------------------ccc-cHHHHHHHhhcC-----
Q 027607 94 DVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN--------------------RQV-KAKQVTFHRKKN----- 146 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~--------------------~~~-~~~~~~~~~~~~----- 146 (221)
|+++..+|..+..|+..+... ..+.|+++|+||+|+.+ +.+ .++...++.+.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999998887776554 35789999999999854 222 234556666654
Q ss_pred ---------CeEEEecccCCCChHHHHHHHHHHHhC
Q 027607 147 ---------LQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 147 ---------~~~~~~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
+.|+++||++|.|++++|..+++.+..
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999999998764
No 75
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=5.2e-29 Score=183.54 Aligned_cols=163 Identities=20% Similarity=0.293 Sum_probs=130.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc--------ccccccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH 85 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~--------~~~~~~~ 85 (221)
+||+|+|.+|||||||+++++.+.+...+.++.+.+.+...+.+++..+.+.+|||||...+... ....+..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999887777778776666556667777789999999997543211 2234789
Q ss_pred ccEEEEEEECCChhhhccHHHHHHHHHhh----cCCCCEEEEEeCCCcCCcc-ccHH-HHHHH-hhcCCeEEEecccCCC
Q 027607 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNRQ-VKAK-QVTFH-RKKNLQYYEISAKSNY 158 (221)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~-~~~~-~~~~~-~~~~~~~~~~s~~~~~ 158 (221)
+|++++|||++++.+|+.+..|+..+... ..+.|+++|+||+|+.... ...+ ...++ ...+++++++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 99999999999999999999998887664 2579999999999995532 2222 22333 3467899999999999
Q ss_pred ChHHHHHHHHHHHhCCCC
Q 027607 159 NFEKPFLYLARKLAGDPN 176 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~ 176 (221)
|++++|+.+++.+....+
T Consensus 161 ~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 161 HILLLFKELLISATTRGR 178 (198)
T ss_pred CHHHHHHHHHHHhhccCC
Confidence 999999999998876654
No 76
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=3e-29 Score=179.49 Aligned_cols=157 Identities=32% Similarity=0.568 Sum_probs=135.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|++|||||||+++++.+.+...+.++.+.++......+++..+.+.+||+||+..+...+..+++.++++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999988887777788887888888877777789999999999999888899999999999999
Q ss_pred ECCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCcCC-ccccH-HHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~ 170 (221)
|++++.+|..+..|+..+..... +.|+++|+||+|+.+ +.... +....+...++.++++|+++|.|+++++.+|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999998866543 699999999999943 33333 3456666778999999999999999999999874
No 77
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=5.2e-29 Score=180.35 Aligned_cols=155 Identities=26% Similarity=0.456 Sum_probs=130.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|++|||||||+++++.+.+...+.++. .+.+.....+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 689999999999999999999988887777775 3455556777777889999999999999999999999999999999
Q ss_pred ECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCc-------------ccc-HHHHHHHhhcCC-eEEEecccCC
Q 027607 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKNL-QYYEISAKSN 157 (221)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~-~~~~~~~~~~~~-~~~~~s~~~~ 157 (221)
|++++.+|+.+. .|+..+....++.|+++|+||+|+... .+. .+...++...+. .++++||++|
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~ 159 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ 159 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 999999999875 688777765568999999999998532 122 245566777776 8999999999
Q ss_pred CChHHHHHHHHH
Q 027607 158 YNFEKPFLYLAR 169 (221)
Q Consensus 158 ~gv~~~~~~l~~ 169 (221)
.|++++|+.++.
T Consensus 160 ~~v~~lf~~~~~ 171 (173)
T cd04130 160 KNLKEVFDTAIL 171 (173)
T ss_pred CCHHHHHHHHHh
Confidence 999999988764
No 78
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=3.6e-29 Score=180.40 Aligned_cols=161 Identities=19% Similarity=0.221 Sum_probs=134.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccC-CcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
++-+||+++|.+|||||||+++++.+.+. ..+.++.+..+....+.+++..+.+.+||++|++.+..++..++.++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999999987 77888888777766777777778999999999999988889999999999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCC-eEEEecccCCCChHHHHHH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~-~~~~~s~~~~~gv~~~~~~ 166 (221)
++|+|++++.+++.+..|+..+.. ..+.|+++|+||+|+.+.. . ..+...++...++ .++++||++|.|+.++|..
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~-~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM-LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc-CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence 999999999999988888876532 2379999999999985432 1 2233455566666 4699999999999999999
Q ss_pred HHHHHh
Q 027607 167 LARKLA 172 (221)
Q Consensus 167 l~~~l~ 172 (221)
|++.+.
T Consensus 161 l~~~~~ 166 (169)
T cd01892 161 LATAAQ 166 (169)
T ss_pred HHHHhh
Confidence 999765
No 79
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=5.8e-29 Score=178.01 Aligned_cols=157 Identities=34% Similarity=0.622 Sum_probs=136.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|++|||||||+++++.+.+...+.++.+.++......+.+..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 68999999999999999999988887778888888887777777777889999999999988888888999999999999
Q ss_pred ECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcc-ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~ 170 (221)
|+++..+++.+..|+..+.... .+.|+++|+||+|+.... ...+...++...+++++++|+++|.|+.+++..+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 9999999999999998887664 578999999999997433 3345556777788999999999999999999998875
No 80
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=2.3e-30 Score=175.05 Aligned_cols=170 Identities=26% Similarity=0.455 Sum_probs=150.9
Q ss_pred CCcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccc
Q 027607 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85 (221)
Q Consensus 6 ~~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~ 85 (221)
........|||+++|..-+|||||+-+++.++|......+..-++..+.+.+.+....+.||||+|++++..+-.-||+.
T Consensus 6 ~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRg 85 (218)
T KOG0088|consen 6 NVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRG 85 (218)
T ss_pred cccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeC
Confidence 33444567999999999999999999999999988888888877888888888888999999999999999999999999
Q ss_pred ccEEEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~gv~~ 162 (221)
++++++|||+++..||+.++.|..+++... ..+.+++|+||+|++..+ ..+++...+...+..|+++||+.+.|+.+
T Consensus 86 SnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~e 165 (218)
T KOG0088|consen 86 SNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISE 165 (218)
T ss_pred CCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHH
Confidence 999999999999999999999999998765 467789999999997533 34567788899999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 027607 163 PFLYLARKLAGDP 175 (221)
Q Consensus 163 ~~~~l~~~l~~~~ 175 (221)
+|+.|...+.+..
T Consensus 166 lFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 166 LFESLTAKMIEHS 178 (218)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887755
No 81
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=3.9e-29 Score=178.09 Aligned_cols=150 Identities=23% Similarity=0.367 Sum_probs=121.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|++|||||||+++++.+.+...+.++.+ .+ ...+.+++..+.+.+|||+|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 5899999999999999999998888766555433 33 35667777788999999999864 34678899999999
Q ss_pred ECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCC---ccccH-HHHHHHhhc-CCeEEEecccCCCChHHHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN---RQVKA-KQVTFHRKK-NLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~---~~~~~-~~~~~~~~~-~~~~~~~s~~~~~gv~~~~~~ 166 (221)
|++++.+|+.+..|+..+.... .+.|+++|+||.|+.. +.+.. +..+++... ++.|++|||++|.|++++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999999999887664 5789999999999742 33333 334566554 589999999999999999999
Q ss_pred HHHH
Q 027607 167 LARK 170 (221)
Q Consensus 167 l~~~ 170 (221)
+++.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 9864
No 82
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=8.4e-29 Score=179.40 Aligned_cols=157 Identities=25% Similarity=0.405 Sum_probs=130.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|++|+|||||+++++.+.+...+.++.+ +.....+.+++..+.+.+||++|++.+...+..++..+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999988777777665 334445667777888999999999999999999999999999999
Q ss_pred ECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc-------------c-cHHHHHHHhhcCC-eEEEecccCC
Q 027607 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEISAKSN 157 (221)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~-~~~~~~~~~~~~~-~~~~~s~~~~ 157 (221)
|++++.+|+.+. .|...+.....+.|+++|+||+|+.+.. + ..+...++...++ .++++||++|
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999998885 5777776656789999999999985421 1 2234455666664 7999999999
Q ss_pred CChHHHHHHHHHHH
Q 027607 158 YNFEKPFLYLARKL 171 (221)
Q Consensus 158 ~gv~~~~~~l~~~l 171 (221)
.|++++|+.++.++
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999875
No 83
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=3.3e-29 Score=182.37 Aligned_cols=160 Identities=22% Similarity=0.286 Sum_probs=125.5
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
..+.+||+++|+.|||||||++++..+.+. .+.++.|.+... +....+.+.+||++|++.++.++..+++++|++
T Consensus 14 ~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~----~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~i 88 (181)
T PLN00223 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEE----EEECCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 456799999999999999999998877775 456777765543 233568899999999999999999999999999
Q ss_pred EEEEECCChhhhccHHHHHHHHHh--hcCCCCEEEEEeCCCcCCccccHHHHHHHhhc-----CCeEEEecccCCCChHH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-----NLQYYEISAKSNYNFEK 162 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~gv~~ 162 (221)
|+|+|+++..++.....++..+.. ...+.|+++|+||+|+.+.....+........ .+.++++||++|.|+.+
T Consensus 89 I~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e 168 (181)
T PLN00223 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHH
Confidence 999999999999887777666543 23579999999999997654333322222211 23466899999999999
Q ss_pred HHHHHHHHHhCC
Q 027607 163 PFLYLARKLAGD 174 (221)
Q Consensus 163 ~~~~l~~~l~~~ 174 (221)
+|++|++.+...
T Consensus 169 ~~~~l~~~~~~~ 180 (181)
T PLN00223 169 GLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHhhc
Confidence 999999987653
No 84
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=2.6e-29 Score=180.94 Aligned_cols=156 Identities=19% Similarity=0.280 Sum_probs=122.9
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
+..+.+||+++|++|||||||++++..+.+. .+.++.+.+..... ...+.+.+|||+|++.+..++..+++.+|+
T Consensus 5 ~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ 79 (168)
T cd04149 5 FGNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQG 79 (168)
T ss_pred cCCCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEE----ECCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence 3457899999999999999999998877664 35667776554322 246889999999999998888999999999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHHh-----hcCCeEEEecccCCCChH
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~gv~ 161 (221)
+++|||+++..++.....|+..+... ..+.|+++|+||+|+.+.....+...... ...+.++++||++|.|++
T Consensus 80 ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 80 LIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 99999999999998887777666432 35789999999999875433333333321 223578999999999999
Q ss_pred HHHHHHHH
Q 027607 162 KPFLYLAR 169 (221)
Q Consensus 162 ~~~~~l~~ 169 (221)
++|.+|++
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999865
No 85
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=1.2e-28 Score=183.91 Aligned_cols=165 Identities=31% Similarity=0.562 Sum_probs=137.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
...+||+|+|++|||||||+++|+.+.+ ..+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 3468999999999999999999887766 456778887777777777877889999999999999999999999999999
Q ss_pred EEEECCChhhhccHHH-HHHHHHhhc--CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607 91 IMFDVTARLTYKNVPT-WHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~ 165 (221)
+|||+++..+|..+.. |...+.... ...|+++|+||+|+.... . ..+...++...++.++++|+++|.|++++|.
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~ 170 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFE 170 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999875 555554332 467999999999986432 2 2344566677788999999999999999999
Q ss_pred HHHHHHhCCCC
Q 027607 166 YLARKLAGDPN 176 (221)
Q Consensus 166 ~l~~~l~~~~~ 176 (221)
+|++.+...+.
T Consensus 171 ~l~~~~~~~~~ 181 (211)
T PLN03118 171 ELALKIMEVPS 181 (211)
T ss_pred HHHHHHHhhhh
Confidence 99999987664
No 86
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=9e-29 Score=187.65 Aligned_cols=157 Identities=29% Similarity=0.511 Sum_probs=131.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|.+|||||||+++|+.+.+...+.++.+ +.....+.+++..+.+.+|||+|++.+..++..++..+|++++||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999998877778876 555566777888899999999999988888888899999999999
Q ss_pred ECCChhhhccHHHHHHHHHhh----------cCCCCEEEEEeCCCcCC-cccc-HHHHHHHh-hcCCeEEEecccCCCCh
Q 027607 94 DVTARLTYKNVPTWHRDLCRV----------CENIPIVLCGNKVDVKN-RQVK-AKQVTFHR-KKNLQYYEISAKSNYNF 160 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~----------~~~~p~ivv~nK~D~~~-~~~~-~~~~~~~~-~~~~~~~~~s~~~~~gv 160 (221)
|+++..+|+.+..|+..+... ..+.|+++|+||+|+.. +... .+..++.. ..++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998887643 24789999999999864 3333 23333333 24678999999999999
Q ss_pred HHHHHHHHHHH
Q 027607 161 EKPFLYLARKL 171 (221)
Q Consensus 161 ~~~~~~l~~~l 171 (221)
+++|.+|++..
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999999854
No 87
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.96 E-value=8.5e-29 Score=177.90 Aligned_cols=157 Identities=22% Similarity=0.383 Sum_probs=128.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc-cccccccccccccEEEEEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~-~~~~~~~~~~~~d~~i~v~ 93 (221)
||+++|++|||||||+++++.+.+...+.++.+.. +.....+++..+.+.+||+||+.. .......+++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 68999999999999999999888776666666533 345566777888999999999875 3445667889999999999
Q ss_pred ECCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCC-CChHHHHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSN-YNFEKPFLYL 167 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~-~gv~~~~~~l 167 (221)
|+++..+|+.+..|+..+.... .+.|+++|+||+|+... .. ..+...++...+++++++|+++| .|+.++|..+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999988877653 37999999999998543 22 23455677778899999999999 5999999999
Q ss_pred HHHHh
Q 027607 168 ARKLA 172 (221)
Q Consensus 168 ~~~l~ 172 (221)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98653
No 88
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=8.3e-29 Score=178.61 Aligned_cols=158 Identities=23% Similarity=0.344 Sum_probs=125.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (221)
||+++|++|||||||++++..+.+.. +.+|.+..... +....+.+.+|||||+..+...+..+++.+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~----~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVET----VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEE----EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999988876543 56666655432 23356889999999999888888999999999999999
Q ss_pred CCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHHhhc------CCeEEEecccCCCChHHHHHH
Q 027607 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK------NLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~s~~~~~gv~~~~~~ 166 (221)
++++.++.....|+..+... ..+.|+++|+||+|+.+.....+...+.... .+.++++||++|.|++++|++
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~ 155 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDW 155 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHH
Confidence 99999999988888877643 2468999999999997653333333333211 236889999999999999999
Q ss_pred HHHHHhCCCCC
Q 027607 167 LARKLAGDPNL 177 (221)
Q Consensus 167 l~~~l~~~~~~ 177 (221)
|++.+..++.+
T Consensus 156 l~~~~~~~~~~ 166 (169)
T cd04158 156 LSRQLVAAGVL 166 (169)
T ss_pred HHHHHhhcccc
Confidence 99998887753
No 89
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.96 E-value=2.4e-28 Score=176.07 Aligned_cols=159 Identities=26% Similarity=0.528 Sum_probs=133.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (221)
++||+++|++|||||||++++..+.+...+.++.+.. ......+++..+.+.+|||||++.+..++..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 4799999999999999999999888877777777643 345566777788999999999999999999999999999999
Q ss_pred EECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcC-CeEEEecccCCCChHHHHHHH
Q 027607 93 FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~-~~~~~~s~~~~~gv~~~~~~l 167 (221)
||++++.+++.+..|...+... ..+.|+++++||.|+.... ...+...+....+ ++++++||++|.|+.++|.++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 9999999999999998887653 3579999999999986432 2233445555665 789999999999999999999
Q ss_pred HHHHh
Q 027607 168 ARKLA 172 (221)
Q Consensus 168 ~~~l~ 172 (221)
+..+.
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 98764
No 90
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.4e-29 Score=172.11 Aligned_cols=163 Identities=27% Similarity=0.536 Sum_probs=143.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEe-cCcEEEEEEEecCCccccccccccccccccEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
.+.+++.|+|++-+|||||++.+..|++....+||.|++++..-+.+ ++..+.+++|||+|+++++++...|++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 35699999999999999999999999999999999999988876655 45678999999999999999999999999999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhhc--CCC-CEEEEEeCCCcCC-ccc-cHHHHHHHhhcCCeEEEecccCCCChHHHH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENI-PIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~-p~ivv~nK~D~~~-~~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~ 164 (221)
++|||++|..||+.+..|+.+...+. +.+ -+.+|++|+|+.. +++ .+++..++..+++.|+++|+++|.|+++.|
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF 165 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF 165 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence 99999999999999999998876654 334 4578999999964 333 456778999999999999999999999999
Q ss_pred HHHHHHHhC
Q 027607 165 LYLARKLAG 173 (221)
Q Consensus 165 ~~l~~~l~~ 173 (221)
..|++.+..
T Consensus 166 ~mlaqeIf~ 174 (213)
T KOG0091|consen 166 DMLAQEIFQ 174 (213)
T ss_pred HHHHHHHHH
Confidence 999998754
No 91
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.96 E-value=2.5e-28 Score=174.67 Aligned_cols=158 Identities=31% Similarity=0.567 Sum_probs=133.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|++|||||||+++++.+.+.....++.+.+.......+.+..+.+.+||++|++.+..++..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999988887666666666666666667777789999999999988888888999999999999
Q ss_pred ECCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~ 170 (221)
|+++..+++.+..|+..+..... +.|+++|+||+|+... ... .+..+.....+..++++|++++.|++++++++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999888876643 6899999999998743 222 33445666778899999999999999999999886
Q ss_pred H
Q 027607 171 L 171 (221)
Q Consensus 171 l 171 (221)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 92
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.96 E-value=1.4e-28 Score=175.04 Aligned_cols=155 Identities=36% Similarity=0.716 Sum_probs=137.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|++|||||||++++..+.+...+.++.+.++.............+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988888777888888888888888888899999999999888888899999999999999
Q ss_pred ECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcC--CccccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK--NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
|++++.++..+..|+..+.... ...|+++++||+|+. ......+...+....+.+++++|++++.|+.+++.+|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 9999999999999998887765 579999999999995 33344555567777789999999999999999999876
No 93
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7e-31 Score=177.68 Aligned_cols=162 Identities=32% Similarity=0.594 Sum_probs=144.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec---------CcEEEEEEEecCCcccccccccccc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN---------CGKIRFYCWDTAGQEKFGGLRDGYY 83 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~~D~~g~~~~~~~~~~~~ 83 (221)
-+|.+.+|++|+|||||+.++..++|......+.|+++..+.+.++ +..+.+++|||+|+++++++...++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf 88 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF 88 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999988877653 2347899999999999999999999
Q ss_pred ccccEEEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccH--HHHHHHhhcCCeEEEecccCCCC
Q 027607 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKA--KQVTFHRKKNLQYYEISAKSNYN 159 (221)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~g 159 (221)
+.+-+++++||+++..||-+++.|+..+..+ +++..+++++||+|+++.++.. ++.+++.+.+++|+++||.+|.+
T Consensus 89 RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~N 168 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTN 168 (219)
T ss_pred HhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcC
Confidence 9999999999999999999999999998654 5788999999999998755443 45688999999999999999999
Q ss_pred hHHHHHHHHHHHhCC
Q 027607 160 FEKPFLYLARKLAGD 174 (221)
Q Consensus 160 v~~~~~~l~~~l~~~ 174 (221)
+++..+.+...+++.
T Consensus 169 v~kave~LldlvM~R 183 (219)
T KOG0081|consen 169 VEKAVELLLDLVMKR 183 (219)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888877654
No 94
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=4.1e-28 Score=175.92 Aligned_cols=158 Identities=30% Similarity=0.508 Sum_probs=128.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (221)
+.||+|+|++|||||||+++++.+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..++.++|++++|
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 468999999999999999999998887777777764443 3556777788999999999999888888889999999999
Q ss_pred EECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCccc--------------cHHHHHHHhhcC-CeEEEecccC
Q 027607 93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KAKQVTFHRKKN-LQYYEISAKS 156 (221)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------------~~~~~~~~~~~~-~~~~~~s~~~ 156 (221)
||+++..+|+.+. .|...+.....+.|+++|+||+|+..... ..+..+++...+ ..++++||++
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 9999999998875 57777776667899999999999854221 122334444444 4799999999
Q ss_pred CCChHHHHHHHHHHH
Q 027607 157 NYNFEKPFLYLARKL 171 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l 171 (221)
|.|++++|.+|+++.
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
No 95
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=1.3e-28 Score=178.43 Aligned_cols=157 Identities=24% Similarity=0.328 Sum_probs=123.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
..+.+||+++|++|||||||++++..+.+. .+.++.+....... ...+.+.+||++|++.+..++..+++++|++
T Consensus 10 ~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~----~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~i 84 (175)
T smart00177 10 GNKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVT----YKNISFTVWDVGGQDKIRPLWRHYYTNTQGL 84 (175)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEE----ECCEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 356799999999999999999998877774 35677776554332 2468899999999999999999999999999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~ 162 (221)
++|+|++++.++.....|+..+... ..+.|+++|+||+|+.+.....+..... ....+.++++||++|.|+++
T Consensus 85 i~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 85 IFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence 9999999999998888887776432 3578999999999987543222222211 12234577899999999999
Q ss_pred HHHHHHHHH
Q 027607 163 PFLYLARKL 171 (221)
Q Consensus 163 ~~~~l~~~l 171 (221)
+|.||...+
T Consensus 165 ~~~~l~~~~ 173 (175)
T smart00177 165 GLTWLSNNL 173 (175)
T ss_pred HHHHHHHHh
Confidence 999998864
No 96
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=2e-28 Score=178.42 Aligned_cols=161 Identities=20% Similarity=0.309 Sum_probs=124.9
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
...+++||+++|++|||||||++++..+.+.. +.+|.+...... ....+.+.+|||+|++.++.++..+++.+|+
T Consensus 13 ~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~----~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ 87 (182)
T PTZ00133 13 FGKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETV----EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNG 87 (182)
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEE----EECCEEEEEEECCCCHhHHHHHHHHhcCCCE
Confidence 34567999999999999999999987777754 566777555432 2356889999999999999999999999999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHH-----HhhcCCeEEEecccCCCChH
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~gv~ 161 (221)
+++|+|+++..++.....++..+... ..+.|+++|+||.|+.+.....+.... +....+.++++||++|.|++
T Consensus 88 iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 88 LIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 99999999999998887776665332 357899999999998654322222211 11223457789999999999
Q ss_pred HHHHHHHHHHhCC
Q 027607 162 KPFLYLARKLAGD 174 (221)
Q Consensus 162 ~~~~~l~~~l~~~ 174 (221)
++|++|++.+.+.
T Consensus 168 e~~~~l~~~i~~~ 180 (182)
T PTZ00133 168 EGLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999877653
No 97
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.96 E-value=5e-28 Score=173.49 Aligned_cols=158 Identities=30% Similarity=0.561 Sum_probs=133.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|++|||||||+++++.+.+...+.++.+.. .......++..+.+.+||+||+..+...+..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999999999999888877767666533 3445567777889999999999999999999999999999999
Q ss_pred ECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCC-c-cccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-R-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~-~-~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
|++++.++..+..|+..+.... .+.|+++|+||+|+.. + ....+........+++++++|+++|.|++++|.++++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999988887652 5799999999999865 2 2233444566667789999999999999999999998
Q ss_pred HHh
Q 027607 170 KLA 172 (221)
Q Consensus 170 ~l~ 172 (221)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 764
No 98
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=1.2e-27 Score=172.48 Aligned_cols=160 Identities=34% Similarity=0.614 Sum_probs=133.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
+.++|+++|++|||||||++++..+.+...+.++.+.+.......+.+..+.+.+||++|+..+...+..++..+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 56999999999999999999988787776667777766766677777777899999999998888888889999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCC-ccccHH-HHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
|+|+++..++..+..|+..+.... .+.|+++|+||+|+.+ +..... ...+.......++++|+++|.|++++|++|+
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 999999999999989988876654 3689999999999864 333333 3344555568899999999999999999999
Q ss_pred HHH
Q 027607 169 RKL 171 (221)
Q Consensus 169 ~~l 171 (221)
+.+
T Consensus 166 ~~~ 168 (169)
T cd04114 166 CRL 168 (169)
T ss_pred HHh
Confidence 864
No 99
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=2.4e-28 Score=174.40 Aligned_cols=151 Identities=24% Similarity=0.340 Sum_probs=118.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|.+|||||||++++..+.+. .+.++.+....... ...+.+.+||++|++.+..++..+++++|++++|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~----~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEE----ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999998888776 45677775543222 24688999999999999888999999999999999
Q ss_pred ECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHHHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~~~~~ 166 (221)
|+++..++.....|+..+... ..+.|+++++||+|+.+.....+..... ....+.++++||++|.|++++|++
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~ 155 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDW 155 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHH
Confidence 999999998888777666432 2468999999999997543322222111 122446789999999999999999
Q ss_pred HHH
Q 027607 167 LAR 169 (221)
Q Consensus 167 l~~ 169 (221)
|++
T Consensus 156 l~~ 158 (159)
T cd04150 156 LSN 158 (159)
T ss_pred Hhc
Confidence 864
No 100
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=2.4e-27 Score=173.67 Aligned_cols=161 Identities=30% Similarity=0.469 Sum_probs=130.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (221)
+.||+|+|++|+|||||++++..+.+...+.++.+..+ .....+.+..+.+.+||++|++.+......++..+++++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 46999999999999999999888887666666554333 33455666778899999999988877777778999999999
Q ss_pred EECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc-----------c-cHHHHHHHhhcCC-eEEEecccCCC
Q 027607 93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------V-KAKQVTFHRKKNL-QYYEISAKSNY 158 (221)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~-~~~~~~~~~~~~~-~~~~~s~~~~~ 158 (221)
|++++..+|+.+. .|+..+....++.|+++|+||+|+.+.. . ..+...++...+. .++++||++|.
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 9999999999986 6888887777789999999999985421 1 2344566667764 89999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 027607 159 NFEKPFLYLARKLAGD 174 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~ 174 (221)
|++++|+++++.+...
T Consensus 160 ~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 160 GVDDVFEAATRAALLV 175 (187)
T ss_pred CHHHHHHHHHHHHhcc
Confidence 9999999999877554
No 101
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=4.3e-28 Score=175.55 Aligned_cols=155 Identities=18% Similarity=0.289 Sum_probs=121.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
....++|+++|++|||||||++++..+. ...+.++.+...... .++ .+.+.+||+||++.++.++..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~-~~~~~~t~g~~~~~~--~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGED-IDTISPTLGFQIKTL--EYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCC-CCCcCCccccceEEE--EEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 4467999999999999999999987663 345566666443332 233 57899999999998888888899999999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~ 162 (221)
++|+|+++..++.....|+..+... ..+.|+++|+||+|+.+.....+..... ...+++++++||++|.|+++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 165 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQ 165 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHH
Confidence 9999999999998888887776432 3589999999999987644333333332 23467899999999999999
Q ss_pred HHHHHHH
Q 027607 163 PFLYLAR 169 (221)
Q Consensus 163 ~~~~l~~ 169 (221)
+|++++.
T Consensus 166 l~~~l~~ 172 (173)
T cd04154 166 GIDWLVD 172 (173)
T ss_pred HHHHHhc
Confidence 9999864
No 102
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.96 E-value=8.6e-28 Score=175.41 Aligned_cols=162 Identities=21% Similarity=0.275 Sum_probs=126.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEe-cCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
..+||+++|++|||||||+++++.+.+... .++.+.+........ ++..+.+.+|||+|++.+..++..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 358999999999999999999988777543 566666666555544 335689999999999988888899999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCccccHHHHHHHh------hcCCeEEEecccCCCChHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHR------KKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~gv~~ 162 (221)
+|+|+++..++.....|+..+.... .+.|+++|+||+|+.+.....+...+.. ...+.++++||++|.|+++
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 9999999988888887877765532 4789999999999865322222222221 1135688999999999999
Q ss_pred HHHHHHHHHhCC
Q 027607 163 PFLYLARKLAGD 174 (221)
Q Consensus 163 ~~~~l~~~l~~~ 174 (221)
++.+|++.+...
T Consensus 161 l~~~l~~~l~~~ 172 (183)
T cd04152 161 GLEKLYEMILKR 172 (183)
T ss_pred HHHHHHHHHHHH
Confidence 999999987543
No 103
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=2.6e-28 Score=175.07 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=123.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEEC
Q 027607 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (221)
Q Consensus 16 i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (221)
|+++|++|||||||+++++.+.+...+.++.+... ..+..+.+.+.+||++|++.++.++..+++++|++++|+|+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 79999999999999999998888777778877543 23455678999999999999999999999999999999999
Q ss_pred CChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHH------HHHHHhhcCCeEEEecccC------CCChHHH
Q 027607 96 TARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK------QVTFHRKKNLQYYEISAKS------NYNFEKP 163 (221)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~------~~~~~~~~~~~~~~~s~~~------~~gv~~~ 163 (221)
++..++.....|+..+.....+.|+++|+||+|+.......+ ...++...++.++++||++ +.|++++
T Consensus 78 t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~ 157 (164)
T cd04162 78 ADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDL 157 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHH
Confidence 999999888888887765456899999999999865433222 2344456678889888887 9999999
Q ss_pred HHHHH
Q 027607 164 FLYLA 168 (221)
Q Consensus 164 ~~~l~ 168 (221)
|..+.
T Consensus 158 ~~~~~ 162 (164)
T cd04162 158 LSQLI 162 (164)
T ss_pred HHHHh
Confidence 98775
No 104
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=3.7e-27 Score=170.19 Aligned_cols=155 Identities=29% Similarity=0.519 Sum_probs=126.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|++|||||||+++|+.+.+...+.++.. ..........+..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999998887655555554 334445566677889999999999988888888889999999999
Q ss_pred ECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCccc-------------cHHHHHHHhhcCC-eEEEecccCCC
Q 027607 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV-------------KAKQVTFHRKKNL-QYYEISAKSNY 158 (221)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-------------~~~~~~~~~~~~~-~~~~~s~~~~~ 158 (221)
|+++..++.... .|+..+.....+.|+++|+||+|+..... ..+...+....++ .++++|+++|.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 999999887754 57777776667899999999999865432 2334456666666 89999999999
Q ss_pred ChHHHHHHHHH
Q 027607 159 NFEKPFLYLAR 169 (221)
Q Consensus 159 gv~~~~~~l~~ 169 (221)
|+.+++.+|.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999998875
No 105
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=4.5e-27 Score=169.10 Aligned_cols=158 Identities=18% Similarity=0.288 Sum_probs=122.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|.+|||||||++++..+.+...+..+.. .......+.+..+.+.+|||+|...+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP--EITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc--ceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999998888655333221 22334455667789999999999877777777789999999999
Q ss_pred ECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcccc----HHHHHHHhhc-C-CeEEEecccCCCChHHHHHH
Q 027607 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRKK-N-LQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~-~-~~~~~~s~~~~~gv~~~~~~ 166 (221)
|++++.+++.+. .|...+.....+.|+++|+||+|+.+.... .+........ . ..++++||++|.|++++|..
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~ 158 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYY 158 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHH
Confidence 999999999875 677777666568999999999999764432 1222222222 2 37999999999999999999
Q ss_pred HHHHHhC
Q 027607 167 LARKLAG 173 (221)
Q Consensus 167 l~~~l~~ 173 (221)
+.+.+.+
T Consensus 159 ~~~~~~~ 165 (166)
T cd01893 159 AQKAVLH 165 (166)
T ss_pred HHHHhcC
Confidence 9887653
No 106
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=1.1e-27 Score=171.48 Aligned_cols=151 Identities=24% Similarity=0.393 Sum_probs=117.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc-cCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+|+++|++|||||||++++..+. ....+.++.+...... ....+.+.+|||||++.+..++..+++.+|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF----EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEE----EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999988765 3556677777554332 235688999999999999999999999999999999
Q ss_pred ECCChhhhccHHHHHHHHHhh----cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~~~ 164 (221)
|+++..++.....|+..+... ..+.|+++|+||+|+.+.....+..... ....+.++++||++|.|++++|
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~ 156 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGV 156 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHH
Confidence 999999988877777766442 1479999999999987543322222111 1123468999999999999999
Q ss_pred HHHHH
Q 027607 165 LYLAR 169 (221)
Q Consensus 165 ~~l~~ 169 (221)
.+|++
T Consensus 157 ~~l~~ 161 (162)
T cd04157 157 QWLQA 161 (162)
T ss_pred HHHhc
Confidence 99875
No 107
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.95 E-value=3.5e-27 Score=168.40 Aligned_cols=155 Identities=33% Similarity=0.591 Sum_probs=130.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (221)
||+|+|++|||||||+++++.+.+...+.++.+ +.........+..+.+.+||+||+..+...+..++..+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887777777766 4555566666667899999999999888888889999999999999
Q ss_pred CCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCcCC-cccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607 95 VTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~ 170 (221)
++++.++..+..|...+..... ..|+++|+||+|+.. .... .+...+....+.+++++|++++.|+++++++|++.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999998888876654 899999999999875 2222 34455666677899999999999999999999875
No 108
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.95 E-value=9.9e-27 Score=171.87 Aligned_cols=160 Identities=28% Similarity=0.385 Sum_probs=128.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (221)
||+++|++|||||||+++++.+.+...+.++.. ......+.+.+..+.+.+||++|+..+..++..++..+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999888776666664 3444456667777899999999998888888889999999999999
Q ss_pred CCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc--cccH-HHHHHH-hhcCCeEEEecccCCCChHHHHHHHH
Q 027607 95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR--QVKA-KQVTFH-RKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~--~~~~-~~~~~~-~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
+++..+++.+..|+..+.... .+.|+++|+||+|+... .... ...... ...+..++++|+++|.|+.++|++|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 999999999999988876653 47999999999998542 2222 222222 23457899999999999999999999
Q ss_pred HHHhCCC
Q 027607 169 RKLAGDP 175 (221)
Q Consensus 169 ~~l~~~~ 175 (221)
+.+...+
T Consensus 160 ~~~~~~~ 166 (198)
T cd04147 160 RQANLPY 166 (198)
T ss_pred HHhhccc
Confidence 9775443
No 109
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=4.5e-27 Score=170.33 Aligned_cols=154 Identities=25% Similarity=0.349 Sum_probs=119.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.++|+++|++|||||||+++++.+.+.. +.++.+.++.... ...+.+.+||+||++.+...+..++..+|+++
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~----~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 87 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIV----YKNIRFLMWDIGGQESLRSSWNTYYTNTDAVI 87 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEE----ECCeEEEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence 357899999999999999999988887764 4667665543322 23578999999999988888888999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~~ 163 (221)
+|+|+++..++.....++..+... ..+.|+++++||+|+.+.....+..... ...+++++++||++|.|++++
T Consensus 88 ~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 88 LVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence 999999998888777766665433 2479999999999987533222222111 234567899999999999999
Q ss_pred HHHHHH
Q 027607 164 FLYLAR 169 (221)
Q Consensus 164 ~~~l~~ 169 (221)
|++|++
T Consensus 168 ~~~l~~ 173 (174)
T cd04153 168 LDWIAS 173 (174)
T ss_pred HHHHhc
Confidence 999875
No 110
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.2e-27 Score=157.88 Aligned_cols=165 Identities=33% Similarity=0.540 Sum_probs=149.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
.-||..++|+-|+|||+|++.+...++.....+++|+.+....+.+.+..+.+++|||+|+++++...+.|++.+-+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCcCC-ccc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~-~~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
|||++.+..+..+..|+...+.. .++..+++++||.|++. +.+ -+++.+++.+.++.+.++|+++|.++++.|...+
T Consensus 90 vyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~a 169 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETA 169 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHH
Confidence 99999999999999999887654 36777889999999975 333 3567789999999999999999999999999999
Q ss_pred HHHhCCCC
Q 027607 169 RKLAGDPN 176 (221)
Q Consensus 169 ~~l~~~~~ 176 (221)
+.++++-.
T Consensus 170 kkiyqniq 177 (215)
T KOG0097|consen 170 KKIYQNIQ 177 (215)
T ss_pred HHHHHhhh
Confidence 99887643
No 111
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=6.3e-27 Score=170.97 Aligned_cols=161 Identities=32% Similarity=0.568 Sum_probs=145.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
+.+||+++|.+|+|||+|+.+++.+.+...|.+++. +.+.+...+++....+.|+||+|++.+..+...++.+++++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 568999999999999999999999999999999998 7777888889899999999999999999999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCC-cccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
||++++..||+.+..++..+... ....|+++|+||+|+.. +.+. ++...++..+++.|+++||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 99999999999999999998443 24689999999999976 4444 44567889999999999999999999999999
Q ss_pred HHHHhC
Q 027607 168 ARKLAG 173 (221)
Q Consensus 168 ~~~l~~ 173 (221)
.+.+..
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 998766
No 112
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.95 E-value=1.1e-26 Score=170.97 Aligned_cols=147 Identities=19% Similarity=0.315 Sum_probs=121.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec-----CcEEEEEEEecCCccccccccccccccccE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-----CGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
+||+++|++|||||||+++++.+.+...+.+|.|.+.....+.+. +..+.+.+|||+|++.+..++..+++++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888899877776666553 457899999999999999999999999999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhh--------------------cCCCCEEEEEeCCCcCCcc-ccH-----HHHHHH
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRV--------------------CENIPIVLCGNKVDVKNRQ-VKA-----KQVTFH 142 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~p~ivv~nK~D~~~~~-~~~-----~~~~~~ 142 (221)
+++|||++++.||+.+..|+..+... ..+.|+++|+||+|+.++. ... ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 99999999999999999999988653 1368999999999986543 222 223456
Q ss_pred hhcCCeEEEecccCCCCh
Q 027607 143 RKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 143 ~~~~~~~~~~s~~~~~gv 160 (221)
.+.+.+.+..++..+..+
T Consensus 161 ~~~~~~~i~~~c~~~~~~ 178 (202)
T cd04102 161 EQGNAEEINLNCTNGRLL 178 (202)
T ss_pred HhcCCceEEEecCCcccc
Confidence 778888888887765543
No 113
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=1.9e-26 Score=166.88 Aligned_cols=156 Identities=24% Similarity=0.432 Sum_probs=125.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.+||+++|+.|||||||++++..+... ...||.|........ .++.+.+||++|+..++..|..|+.+++++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~----~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKY----KGYSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEE----TTEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceeee----CcEEEEEEeccccccccccceeeccccceeE
Confidence 68899999999999999999997766543 466677766655444 5678999999999999999999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH------hhcCCeEEEecccCCCChHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH------RKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~------~~~~~~~~~~s~~~~~gv~~ 162 (221)
+|+|+++...+......+..+... ..+.|+++++||.|..+.....+..... ....+.++.||+.+|.|+.+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e 166 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDE 166 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHH
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHH
Confidence 999999998888777776666543 3589999999999987654433332211 13456789999999999999
Q ss_pred HHHHHHHHH
Q 027607 163 PFLYLARKL 171 (221)
Q Consensus 163 ~~~~l~~~l 171 (221)
.++||.+++
T Consensus 167 ~l~WL~~~~ 175 (175)
T PF00025_consen 167 GLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999864
No 114
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.95 E-value=2.5e-26 Score=167.29 Aligned_cols=161 Identities=25% Similarity=0.378 Sum_probs=130.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
.||+++|++|||||||+++++.+.+...+.++.+... .......+..+.+.+||+||++.+...+..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998877665666654333 344555666778999999999988888888999999999999
Q ss_pred ECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcc-cc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
|+++..+++.+..|+..+.... .+.|+++|+||+|+.... .. .+...+....+.+++++|++++.|+.+++.++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999998888776643 468999999999986422 22 2334455666789999999999999999999999
Q ss_pred HHhCCC
Q 027607 170 KLAGDP 175 (221)
Q Consensus 170 ~l~~~~ 175 (221)
.+...+
T Consensus 161 ~~~~~~ 166 (180)
T cd04137 161 EIEKVE 166 (180)
T ss_pred HHHHhc
Confidence 876554
No 115
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=1e-26 Score=170.82 Aligned_cols=155 Identities=17% Similarity=0.292 Sum_probs=119.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.++|+++|++|||||||++++..+.+. .+.++.+.+... +.+ ....+.+||+||+..+...+..+++.+++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~--i~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEE--LTI--GNIKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEE--EEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999998876653 455566544332 223 3478899999999888888888999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCccccHHHHHHHhh----------------cCCeEEEe
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRK----------------KNLQYYEI 152 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----------------~~~~~~~~ 152 (221)
+|+|+++..++.....|+..+.... .+.|+++++||+|+.+.....+....... ..+.++++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMC 171 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEe
Confidence 9999999988887777777765432 46999999999998753333333333321 23568999
Q ss_pred cccCCCChHHHHHHHHHH
Q 027607 153 SAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 153 s~~~~~gv~~~~~~l~~~ 170 (221)
||++|.|+.++|.+|++.
T Consensus 172 Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 172 SVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EecCCCChHHHHHHHHhh
Confidence 999999999999999874
No 116
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=1.5e-28 Score=161.72 Aligned_cols=158 Identities=26% Similarity=0.538 Sum_probs=140.2
Q ss_pred EEcCCCCcHHHHHHHHhcCcc-CCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEECC
Q 027607 18 IVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT 96 (221)
Q Consensus 18 v~G~~gsGKStL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 96 (221)
++|++++|||+|+-++..|.+ .....++.|.++..+.+..++..+.+++|||+|++++++....|++.+|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 689999999999988766666 3456779999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCC-c-cccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607 97 ARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-R-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 97 ~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~-~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
+..||++...|+..+..+. ..+.+.+++||+|+.. + ...++...++...+++++++|+++|-+++..|..|+..+.+
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence 9999999999999998875 4677889999999954 3 33456778899999999999999999999999999998866
Q ss_pred CC
Q 027607 174 DP 175 (221)
Q Consensus 174 ~~ 175 (221)
..
T Consensus 162 ~~ 163 (192)
T KOG0083|consen 162 LK 163 (192)
T ss_pred hc
Confidence 43
No 117
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=9.8e-27 Score=167.42 Aligned_cols=150 Identities=23% Similarity=0.291 Sum_probs=118.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (221)
+|+++|++|||||||++++..+ +...+.++.|.+... +. ...+.+.+||++|+..++.++..++++++++++|+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTK--LR--LDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEE--EE--ECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 5899999999999999997755 666777888765432 22 246789999999999999999999999999999999
Q ss_pred CCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCccccHHHH------HHHhh--cCCeEEEecccCC------C
Q 027607 95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV------TFHRK--KNLQYYEISAKSN------Y 158 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~------~~~~~--~~~~~~~~s~~~~------~ 158 (221)
+++..++..+..|+..+.... .+.|+++|+||.|+.+.....+.. .++.+ ..+.++++||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 999999999888888776542 478999999999997654222222 12212 2356788999998 8
Q ss_pred ChHHHHHHHHH
Q 027607 159 NFEKPFLYLAR 169 (221)
Q Consensus 159 gv~~~~~~l~~ 169 (221)
|+.+.|+||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999965
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=1.1e-26 Score=166.06 Aligned_cols=151 Identities=19% Similarity=0.307 Sum_probs=116.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (221)
+|+++|++|||||||++++..+.+.. ..++.+.+.... .. .....+.+||++|+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~~--~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEML--QL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEEE--Ee-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999988877653 356666444322 22 245789999999999888888889999999999999
Q ss_pred CCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHH------HHhhcCCeEEEecccCCCChHHHHHH
Q 027607 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT------FHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~gv~~~~~~ 166 (221)
+++..++.....|+..+... ..+.|+++|+||+|+.......+... ++...+++++++||++|.|++++|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 156 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRK 156 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHH
Confidence 99998888888777766543 25899999999999864322222221 12223457899999999999999999
Q ss_pred HHH
Q 027607 167 LAR 169 (221)
Q Consensus 167 l~~ 169 (221)
|++
T Consensus 157 i~~ 159 (160)
T cd04156 157 LAS 159 (160)
T ss_pred Hhc
Confidence 865
No 119
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.95 E-value=7e-27 Score=167.20 Aligned_cols=164 Identities=27% Similarity=0.476 Sum_probs=144.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec-CcEEEEEEEecCCccccccccccccccccEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
..+|++|+|+.++|||+|+..+..+.|...+.+|.. +.+...+.++ +..+.+.+|||+|+++|..++...|..+|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 568999999999999999999999999999999996 7777788885 89999999999999999998888899999999
Q ss_pred EEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc--------------ccHHHHHHHhhcC-CeEEEecc
Q 027607 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEISA 154 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~--------------~~~~~~~~~~~~~-~~~~~~s~ 154 (221)
+||++.++.||+++. +|+.++..++++.|+++|++|.|+.+.. ...+....+.+.| ..|++||+
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 999999999999855 8999999999999999999999987421 1233446666666 67999999
Q ss_pred cCCCChHHHHHHHHHHHhCCCC
Q 027607 155 KSNYNFEKPFLYLARKLAGDPN 176 (221)
Q Consensus 155 ~~~~gv~~~~~~l~~~l~~~~~ 176 (221)
++..|++++|+..+++....+.
T Consensus 162 ~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999999998877654
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.94 E-value=3.4e-26 Score=163.24 Aligned_cols=150 Identities=21% Similarity=0.320 Sum_probs=112.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (221)
||+++|++|||||||++++..+.+.. +.++.+.+... +....+.+.+|||||++.++.++..++..++++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVET----VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeEE----EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999987776643 44555544432 22345789999999999888888999999999999999
Q ss_pred CCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHHHHHHH
Q 027607 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
+++..++.....++..+... ..+.|+++|+||+|+.+.....+..... ...+.+++++|+++|.|++++|++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 155 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL 155 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence 99988776655555443322 2479999999999986543222221111 1123579999999999999999998
Q ss_pred HH
Q 027607 168 AR 169 (221)
Q Consensus 168 ~~ 169 (221)
++
T Consensus 156 ~~ 157 (158)
T cd04151 156 VN 157 (158)
T ss_pred hc
Confidence 75
No 121
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.94 E-value=2.9e-26 Score=164.98 Aligned_cols=151 Identities=24% Similarity=0.385 Sum_probs=113.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcc------CCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
+|+++|++|||||||++++..... ...+.++.+..... +.+ ....+.+|||||+..+..++..++..+++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGT--IEV--GNARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999765322 22233444433332 222 35789999999999988888889999999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHHh-------hcCCeEEEecccCCCC
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-------KKNLQYYEISAKSNYN 159 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-------~~~~~~~~~s~~~~~g 159 (221)
+++|+|+++..++.....|+..+... ..+.|+++|+||+|+.......+...+.. ...++++++||++|.|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 156 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG 156 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcC
Confidence 99999999988888877777766543 24799999999999876533333332222 2346899999999999
Q ss_pred hHHHHHHHHH
Q 027607 160 FEKPFLYLAR 169 (221)
Q Consensus 160 v~~~~~~l~~ 169 (221)
+++++++|+.
T Consensus 157 v~e~~~~l~~ 166 (167)
T cd04160 157 VREGIEWLVE 166 (167)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=5e-26 Score=166.20 Aligned_cols=155 Identities=17% Similarity=0.274 Sum_probs=118.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.++|+++|++|||||||++++..+.+. .+.++.+.+.... ..+++.+.+||++|+..++..+..++.++++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~----~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEEL----AIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEE----EECCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 46799999999999999999998876553 3345555443322 224578999999999988888899999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHHh------------hcCCeEEEecccC
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR------------KKNLQYYEISAKS 156 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~------------~~~~~~~~~s~~~ 156 (221)
+|+|++++.++.....++..+... ..+.|+++|+||+|+.......+...... .....++++|+++
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~ 169 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVR 169 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeeccc
Confidence 999999998888877777666432 25789999999999865433333322211 1244689999999
Q ss_pred CCChHHHHHHHHHH
Q 027607 157 NYNFEKPFLYLARK 170 (221)
Q Consensus 157 ~~gv~~~~~~l~~~ 170 (221)
|.|++++++||...
T Consensus 170 ~~g~~~~~~wl~~~ 183 (184)
T smart00178 170 RMGYGEGFKWLSQY 183 (184)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999999764
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.94 E-value=8.4e-26 Score=161.13 Aligned_cols=150 Identities=23% Similarity=0.376 Sum_probs=119.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (221)
||+++|.+|||||||+++++.+. ...+.++.+.+.....+ ....+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEEE----CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999988776 34556666655544332 35789999999999988888999999999999999
Q ss_pred CCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHHHHHHH
Q 027607 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
++++.++.....|+..+... ..+.|+++|+||+|+.......+..... ....++++++|+++|.|+.++|++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 99999998888877766553 2589999999999987644333322222 2345689999999999999999998
Q ss_pred HH
Q 027607 168 AR 169 (221)
Q Consensus 168 ~~ 169 (221)
..
T Consensus 156 ~~ 157 (158)
T cd00878 156 LQ 157 (158)
T ss_pred hh
Confidence 75
No 124
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.94 E-value=1.9e-25 Score=152.15 Aligned_cols=157 Identities=20% Similarity=0.356 Sum_probs=130.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
++++|.++|..||||||++++ +.+.......|+.|.......+ +.+.+++||++|+...+..|..||..+|++|+
T Consensus 15 rE~riLiLGLdNsGKTti~~k-l~~~~~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdglIw 89 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKK-LLGEDTDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW 89 (185)
T ss_pred heeEEEEEecCCCCchhHHHH-hcCCCccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence 489999999999999999999 5555577778888877666655 67899999999999999999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHh--hcCCCCEEEEEeCCCcCCccccHH------HHHHHhhcCCeEEEecccCCCChHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAK------QVTFHRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~gv~~~ 163 (221)
|+|.+++..++.....++.+.. .....|++++.||.|+...-...+ .........++.+.||+.+|.++.+.
T Consensus 90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~g 169 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEG 169 (185)
T ss_pred EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHH
Confidence 9999999999887766655533 235789999999999975333222 22344667889999999999999999
Q ss_pred HHHHHHHHhC
Q 027607 164 FLYLARKLAG 173 (221)
Q Consensus 164 ~~~l~~~l~~ 173 (221)
+.||...++.
T Consensus 170 idWL~~~l~~ 179 (185)
T KOG0073|consen 170 IDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHH
Confidence 9999998876
No 125
>PLN00023 GTP-binding protein; Provisional
Probab=99.94 E-value=1.8e-25 Score=172.14 Aligned_cols=140 Identities=21% Similarity=0.398 Sum_probs=118.3
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecC-------------cEEEEEEEecCCccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-------------GKIRFYCWDTAGQEK 74 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~D~~g~~~ 74 (221)
......+||+|+|..|||||||+++|+.+.+...+.+++|.++....+.+++ ..+.+.+|||+|++.
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 3456779999999999999999999999999888889999888766666542 468899999999999
Q ss_pred cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhc-------------CCCCEEEEEeCCCcCCcc--------
Q 027607 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-------------ENIPIVLCGNKVDVKNRQ-------- 133 (221)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~p~ivv~nK~D~~~~~-------- 133 (221)
+..++..++++++++|+|||+++..+|+.+..|+..+.... .++|+++|+||+|+..+.
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~ 175 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN 175 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence 99999999999999999999999999999999999987652 248999999999986532
Q ss_pred ccHHHHHHHhhcCC
Q 027607 134 VKAKQVTFHRKKNL 147 (221)
Q Consensus 134 ~~~~~~~~~~~~~~ 147 (221)
..+++.+++...++
T Consensus 176 ~~e~a~~~A~~~g~ 189 (334)
T PLN00023 176 LVDAARQWVEKQGL 189 (334)
T ss_pred cHHHHHHHHHHcCC
Confidence 23456678877664
No 126
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=2.4e-25 Score=162.01 Aligned_cols=154 Identities=16% Similarity=0.201 Sum_probs=112.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc-------cCCcccC------CcceeeeeeEEEe-----cCcEEEEEEEecCCccccc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGE-------FEKKYEP------TIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFG 76 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~i~~~D~~g~~~~~ 76 (221)
+|+++|++|||||||+++|+... +...+.+ +.|.+........ ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 69999999999999999988632 1112222 2244544433332 5567889999999999998
Q ss_pred cccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC---eEEEec
Q 027607 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEIS 153 (221)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~s 153 (221)
..+..+++.+|++++|+|+++..++.....|.... ..+.|+++|+||+|+.+........+++...++ .++++|
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~---~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL---ENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVS 158 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH---HcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEee
Confidence 88888999999999999999877666665554332 137899999999998653222222233444444 489999
Q ss_pred ccCCCChHHHHHHHHHHH
Q 027607 154 AKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 154 ~~~~~gv~~~~~~l~~~l 171 (221)
+++|.|++++|++|++.+
T Consensus 159 a~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 159 AKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ccCCCCHHHHHHHHHhhC
Confidence 999999999999998864
No 127
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.93 E-value=9e-25 Score=157.33 Aligned_cols=156 Identities=15% Similarity=0.116 Sum_probs=107.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccc---------cccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD---------GYYI 84 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~---------~~~~ 84 (221)
.+|+++|++|||||||+++++.+.+.. .+..+.+............+.+.+|||||......... ....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEV--APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCcc--CCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 379999999999999999988766531 22223233333333333567899999999743111000 0112
Q ss_pred cccEEEEEEECCChhhh--ccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607 85 HGQCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 85 ~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~ 162 (221)
.+|++++|+|+++..++ .....|+..+.....+.|+++|+||+|+.+.....+...+....+.+++++||++|.|+++
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDE 158 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHH
Confidence 36899999999987654 4455677776655458999999999998654333333344445567899999999999999
Q ss_pred HHHHHHHHH
Q 027607 163 PFLYLARKL 171 (221)
Q Consensus 163 ~~~~l~~~l 171 (221)
++++|.+.+
T Consensus 159 l~~~l~~~~ 167 (168)
T cd01897 159 VKNKACELL 167 (168)
T ss_pred HHHHHHHHh
Confidence 999999875
No 128
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.93 E-value=5.5e-25 Score=156.57 Aligned_cols=150 Identities=24% Similarity=0.428 Sum_probs=117.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEEC
Q 027607 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (221)
Q Consensus 16 i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (221)
|+++|++|||||||++++..+.+...+.++.+....... . +.+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVT--K--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEE--E--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 799999999999999999988887777777776554322 2 347899999999998888888999999999999999
Q ss_pred CChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHHHHHHHH
Q 027607 96 TARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
++..++.....|+..+... ..+.|+++|+||+|+.+.....+..... ....++++++|+++|.|+.+++++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLI 157 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHh
Confidence 9988887777666665432 2478999999999986543322222111 22346789999999999999999987
Q ss_pred H
Q 027607 169 R 169 (221)
Q Consensus 169 ~ 169 (221)
+
T Consensus 158 ~ 158 (159)
T cd04159 158 K 158 (159)
T ss_pred h
Confidence 5
No 129
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.93 E-value=8.1e-25 Score=158.33 Aligned_cols=155 Identities=17% Similarity=0.329 Sum_probs=115.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
..+.++|+++|++|||||||++++....+ ..+.++.|.+..... . .+..+.+||++|+..+...+..++..++++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~-~~~~~t~g~~~~~i~--~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDI-SHITPTQGFNIKTVQ--S--DGFKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCC-cccCCCCCcceEEEE--E--CCEEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 34579999999999999999999776544 345566665443332 2 346899999999988877888889999999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHHhh-----cCCeEEEecccCCCChHH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-----KNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~gv~~ 162 (221)
++|+|+++..++.....++..+... ..+.|+++++||+|+.+.....+....... ....++++||++|.|+++
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQE 165 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHH
Confidence 9999999988887777666555432 247999999999998654322222221111 123478999999999999
Q ss_pred HHHHHHH
Q 027607 163 PFLYLAR 169 (221)
Q Consensus 163 ~~~~l~~ 169 (221)
+|+||++
T Consensus 166 ~~~~l~~ 172 (173)
T cd04155 166 GMNWVCK 172 (173)
T ss_pred HHHHHhc
Confidence 9999976
No 130
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.7e-25 Score=154.01 Aligned_cols=162 Identities=24% Similarity=0.353 Sum_probs=136.3
Q ss_pred CcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccc
Q 027607 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~ 86 (221)
..+..++.+|+++|-.+|||||+++++..+..... .||+|.......+ +++.+.+||..|+..++.+|..|+.+.
T Consensus 11 ~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t 85 (181)
T KOG0070|consen 11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNT 85 (181)
T ss_pred hccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCC
Confidence 45678999999999999999999999777777655 8999999888877 589999999999999999999999999
Q ss_pred cEEEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCccccHHHHHH-----HhhcCCeEEEecccCCCC
Q 027607 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYN 159 (221)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~g 159 (221)
+++|+|+|.++++.+...+..+..+.... ...|+++++||.|+++.-...+.... .....+.+..|+|.+|.|
T Consensus 86 ~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G 165 (181)
T KOG0070|consen 86 QGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEG 165 (181)
T ss_pred cEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeecccccccc
Confidence 99999999999999988777666665543 58999999999999876554443322 223456788899999999
Q ss_pred hHHHHHHHHHHHhC
Q 027607 160 FEKPFLYLARKLAG 173 (221)
Q Consensus 160 v~~~~~~l~~~l~~ 173 (221)
+.+.++|+...+..
T Consensus 166 L~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 166 LYEGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987754
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=1.1e-24 Score=157.14 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=107.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcE-EEEEEEecCCccc----cccccccc---cccc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEK----FGGLRDGY---YIHG 86 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~D~~g~~~----~~~~~~~~---~~~~ 86 (221)
+|+++|.+|||||||+++|..... ......+.+.......+.... ..+.+|||||... ...+...+ +..+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~--~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP--KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERT 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc--cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence 589999999999999999765432 112222333333222222223 4899999999632 22233333 3459
Q ss_pred cEEEEEEECCCh-hhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCccccHHHH-HHHhh-cCCeEEEecccCCCCh
Q 027607 87 QCAIIMFDVTAR-LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRK-KNLQYYEISAKSNYNF 160 (221)
Q Consensus 87 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~-~~~~~~~~s~~~~~gv 160 (221)
|++++|+|+++. .+++.+..|.+.+.... ...|+++|+||+|+.+.....+.. .+... .+.+++++|++++.|+
T Consensus 80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred CEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 999999999998 78888888888776553 368999999999986544433322 33333 3678999999999999
Q ss_pred HHHHHHHHHH
Q 027607 161 EKPFLYLARK 170 (221)
Q Consensus 161 ~~~~~~l~~~ 170 (221)
+++|++|++.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999874
No 132
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.92 E-value=1.2e-26 Score=160.27 Aligned_cols=163 Identities=31% Similarity=0.568 Sum_probs=147.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
..+|++|+|..++||||+++++|.|-|...+..++|+++....+.+....+++.+||++|++++..+...|++.+.+.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 45899999999999999999999999999999999999988888888778888999999999999999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc--HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
||+.++..||+....|++.+......+|.++|-||+|+.+.... .+...++...++.++.+|++..-|+..+|.+|+.
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLae 178 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAE 178 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999998654433 3445677888889999999999999999999998
Q ss_pred HHhCC
Q 027607 170 KLAGD 174 (221)
Q Consensus 170 ~l~~~ 174 (221)
.+.+.
T Consensus 179 K~~q~ 183 (246)
T KOG4252|consen 179 KLTQQ 183 (246)
T ss_pred HHHHH
Confidence 77553
No 133
>PRK15494 era GTPase Era; Provisional
Probab=99.92 E-value=7.8e-24 Score=167.64 Aligned_cols=167 Identities=17% Similarity=0.265 Sum_probs=116.7
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc-ccccc-------c
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRD-------G 81 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~-~~~~~-------~ 81 (221)
..+.++|+++|.+|||||||+|+|++..+ ..+.+..++|+......+...+..+.+|||||.... ..+.. .
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~-~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKL-SIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCce-eeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 35678999999999999999999886655 344556666655544444444567899999997432 22211 2
Q ss_pred ccccccEEEEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcC--CeEEEecccCCC
Q 027607 82 YYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNY 158 (221)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~ 158 (221)
.+..+|++++|+|+.+ ++.... .|+..+... +.|.++|+||+|+.+.. ..+..+.+...+ ..++++||++|.
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~~-~~~~~~~l~~~~~~~~i~~iSAktg~ 202 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESKY-LNDIKAFLTENHPDSLLFPISALSGK 202 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCcccc-HHHHHHHHHhcCCCcEEEEEeccCcc
Confidence 3678999999999765 344443 344444332 56788999999986542 233334443333 579999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCccccC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVES 182 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~e 182 (221)
|+++++++|...+..++..+.-+.
T Consensus 203 gv~eL~~~L~~~l~~~~~~~~~~~ 226 (339)
T PRK15494 203 NIDGLLEYITSKAKISPWLYAEDD 226 (339)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCC
Confidence 999999999999888887664443
No 134
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=9.3e-24 Score=162.90 Aligned_cols=162 Identities=15% Similarity=0.081 Sum_probs=112.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc--------ccccccccc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYYIHG 86 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~--------~~~~~~~~~ 86 (221)
+|+++|.+|||||||+|+|++... ....+.+++|..........+...+.+|||||...... ....++..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~-~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI-SITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE-eecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 689999999999999999776553 33455556666554443333446799999999754311 123457889
Q ss_pred cEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH-HHHHHHhhcCC-eEEEecccCCCChHHHH
Q 027607 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPF 164 (221)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~-~~~~~s~~~~~gv~~~~ 164 (221)
|++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+..... ....+....+. +++++||++|.|+++++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLA 156 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence 9999999999876553 333333333 378999999999986432222 22233333333 78999999999999999
Q ss_pred HHHHHHHhCCCCCcccc
Q 027607 165 LYLARKLAGDPNLHFVE 181 (221)
Q Consensus 165 ~~l~~~l~~~~~~~~~~ 181 (221)
++|.+.+...|..+..+
T Consensus 157 ~~l~~~l~~~~~~~~~~ 173 (270)
T TIGR00436 157 AFIEVHLPEGPFRYPED 173 (270)
T ss_pred HHHHHhCCCCCCCCCCc
Confidence 99999887777555333
No 135
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.91 E-value=6.4e-23 Score=145.66 Aligned_cols=156 Identities=27% Similarity=0.469 Sum_probs=119.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (221)
++||+++|.+|||||||+++++.+.+...+.++.+.+........++....+.+||+||+..+...+..++..++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999998886666666666666665566666558899999999988888888888889999999
Q ss_pred EECCCh-hhhccHH-HHHHHHHhhcC-CCCEEEEEeCCCcCCccccHHHH-HHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 93 FDVTAR-LTYKNVP-TWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 93 ~d~~~~-~s~~~~~-~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
+|.... .++.... .|...+..... +.|+++++||+|+.......... .+.......++++|+.+|.|+.+++.+|.
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 998876 5555544 56555555444 78999999999987644333222 23334456799999999999999998763
No 136
>PTZ00099 rab6; Provisional
Probab=99.91 E-value=7.8e-23 Score=147.83 Aligned_cols=140 Identities=30% Similarity=0.540 Sum_probs=121.1
Q ss_pred CccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhc
Q 027607 36 GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 115 (221)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 115 (221)
+.|...+.+|.|.++....+.++++.+.+.+|||+|++.+..++..+++++|++++|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45667788999999988888888889999999999999999999999999999999999999999999999998886553
Q ss_pred -CCCCEEEEEeCCCcCC-cc-ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHHhCCC
Q 027607 116 -ENIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 116 -~~~p~ivv~nK~D~~~-~~-~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~~~ 175 (221)
...|+++|+||+|+.. +. ...+...++...++.++++||++|.|+.++|.+|++.+.+.+
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 5789999999999864 22 233455677777889999999999999999999999886655
No 137
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.91 E-value=2.9e-23 Score=154.14 Aligned_cols=155 Identities=15% Similarity=0.085 Sum_probs=107.5
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeee--eEEEecCcEEEEEEEecCCccccccc--cc-----
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKFGGL--RD----- 80 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~D~~g~~~~~~~--~~----- 80 (221)
..+.++|+|+|++|||||||+++++.+..... ...+.+... ....+.+ ...+.+|||||....... ..
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 114 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAE--DQLFATLDPTTRRLRLPD-GREVLLTDTVGFIRDLPHQLVEAFRST 114 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccC--CccceeccceeEEEEecC-CceEEEeCCCccccCCCHHHHHHHHHH
Confidence 34568999999999999999999887653221 111222222 2222332 237899999997321110 01
Q ss_pred -cccccccEEEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCC
Q 027607 81 -GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY 158 (221)
Q Consensus 81 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (221)
..+..+|++++|+|++++.++.....|...+.... .+.|+++|+||+|+.+..... ........+++++|+++|.
T Consensus 115 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 115 LEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceEEEEcCCCC
Confidence 12568999999999999888877766766665433 368999999999986543222 3344556789999999999
Q ss_pred ChHHHHHHHHHH
Q 027607 159 NFEKPFLYLARK 170 (221)
Q Consensus 159 gv~~~~~~l~~~ 170 (221)
|+.+++.+|.+.
T Consensus 192 gi~~l~~~L~~~ 203 (204)
T cd01878 192 GLDELLEAIEEL 203 (204)
T ss_pred CHHHHHHHHHhh
Confidence 999999999875
No 138
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.90 E-value=6.2e-23 Score=147.03 Aligned_cols=153 Identities=14% Similarity=0.038 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC---ccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTG---EFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
..|+++|++|||||||+++|... .+.....+....+.......+.. ...+.+|||||++.+......++..+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 36899999999999999997742 22211112222222222233331 468999999999887666666788999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc----cHHHHHHHhh---cCCeEEEecccCCCChHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRK---KNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~~~---~~~~~~~~s~~~~~gv~~~ 163 (221)
+|+|+++....+. ...+..+.. ....|+++|+||+|+.+... ..+....... .+.+++++|+++|.|++++
T Consensus 80 ~V~d~~~~~~~~~-~~~~~~~~~-~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (164)
T cd04171 80 LVVAADEGIMPQT-REHLEILEL-LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEEL 157 (164)
T ss_pred EEEECCCCccHhH-HHHHHHHHH-hCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHH
Confidence 9999987321111 111111211 12359999999999865421 1222233332 4678999999999999999
Q ss_pred HHHHHH
Q 027607 164 FLYLAR 169 (221)
Q Consensus 164 ~~~l~~ 169 (221)
+..+.+
T Consensus 158 ~~~l~~ 163 (164)
T cd04171 158 KEYLDE 163 (164)
T ss_pred HHHHhh
Confidence 988764
No 139
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.90 E-value=2e-23 Score=146.27 Aligned_cols=133 Identities=20% Similarity=0.211 Sum_probs=94.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcc-----ccccccccccccccEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-----KFGGLRDGYYIHGQCA 89 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~-----~~~~~~~~~~~~~d~~ 89 (221)
||+++|++|||||||+++|..+.+. +.++.+. .+. -.+|||||.. .+..+. ..++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~-------~~~-----~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV-------EYN-----DGAIDTPGEYVENRRLYSALI-VTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeE-------EEc-----CeeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence 8999999999999999998766431 2222221 111 1689999973 222222 247899999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc-HHHHHHHhhcCC-eEEEecccCCCChHHHHHHH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~-~~~~~s~~~~~gv~~~~~~l 167 (221)
++|+|++++.++... .|.... ..|+++|+||+|+.++... ++...++...+. +++++|+++|.|++++|.+|
T Consensus 67 ilv~d~~~~~s~~~~-~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 67 ALVQSATDPESRFPP-GFASIF-----VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred EEEecCCCCCcCCCh-hHHHhc-----cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence 999999999988652 343322 3499999999998654333 233445555555 79999999999999999887
Q ss_pred H
Q 027607 168 A 168 (221)
Q Consensus 168 ~ 168 (221)
+
T Consensus 141 ~ 141 (142)
T TIGR02528 141 N 141 (142)
T ss_pred h
Confidence 5
No 140
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=5.3e-23 Score=161.91 Aligned_cols=159 Identities=18% Similarity=0.132 Sum_probs=117.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecC-cEEEEEEEecCCcccc----cccccc---ccccc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKF----GGLRDG---YYIHG 86 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~D~~g~~~~----~~~~~~---~~~~~ 86 (221)
.|+++|.+|||||||++++.... +.....+++|..+....+.. ....+.+||+||...- ..+... .+..+
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 58999999999999999977543 23444555666666555443 3457999999996421 122223 34578
Q ss_pred cEEEEEEECCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCccc-cHH-HHHHHhhcCCeEEEecccCCCChH
Q 027607 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQV-KAK-QVTFHRKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~-~~~-~~~~~~~~~~~~~~~s~~~~~gv~ 161 (221)
+++++|+|+++..+++.+..|...+..+. .++|+++|+||+|+.+... ..+ ...+....+.+++++||+++.|++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 99999999998878888888988887654 3789999999999865432 222 223344556789999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 027607 162 KPFLYLARKLAGDP 175 (221)
Q Consensus 162 ~~~~~l~~~l~~~~ 175 (221)
+++.+|.+.+...+
T Consensus 318 eL~~~L~~~l~~~~ 331 (335)
T PRK12299 318 ELLRALWELLEEAR 331 (335)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999876543
No 141
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=2.1e-23 Score=145.81 Aligned_cols=147 Identities=17% Similarity=0.204 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc------ccccc--cc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY--IH 85 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~------~~~~~--~~ 85 (221)
++|+++|.||||||||+|+|.+.. ....+.+|+|.......+......+.++|+||....... ...++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 589999999999999999966555 446778888888887776655688999999995433222 12233 57
Q ss_pred ccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cccHHHHHHHhhcCCeEEEecccCCCChHHHH
Q 027607 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~ 164 (221)
.|+++.|+|+++.+.-..+ ...+.. -+.|+++|+||+|...+ ........+....+++++++|+.++.|+++++
T Consensus 79 ~D~ii~VvDa~~l~r~l~l---~~ql~e--~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLYL---TLQLLE--LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHH---HHHHHH--TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred CCEEEEECCCCCHHHHHHH---HHHHHH--cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence 8999999999886432222 222222 28999999999998543 33334556777789999999999999999988
Q ss_pred HHH
Q 027607 165 LYL 167 (221)
Q Consensus 165 ~~l 167 (221)
..|
T Consensus 154 ~~I 156 (156)
T PF02421_consen 154 DAI 156 (156)
T ss_dssp HHH
T ss_pred hhC
Confidence 764
No 142
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.90 E-value=5.3e-23 Score=151.53 Aligned_cols=146 Identities=16% Similarity=0.218 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc--CccCCcc------------cCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT--GEFEKKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR 79 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~ 79 (221)
-+|+++|.+|||||||+++|+. +.+...+ ..+.|.+.......+..+...+.+|||||++.+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3899999999999999999886 4443332 2345666666666666778899999999999998888
Q ss_pred ccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc---HHHHHHH-------hhcCCeE
Q 027607 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFH-------RKKNLQY 149 (221)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~-------~~~~~~~ 149 (221)
..+++.+|++++|+|+++.. +.....++..... .+.|+++|+||+|+...... .+..... ...++++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 159 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPV 159 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCE
Confidence 99999999999999998742 2222233333322 37899999999998643321 1222222 1236789
Q ss_pred EEecccCCCChHH
Q 027607 150 YEISAKSNYNFEK 162 (221)
Q Consensus 150 ~~~s~~~~~gv~~ 162 (221)
+++|+++|.|+.+
T Consensus 160 v~~Sa~~g~~~~~ 172 (194)
T cd01891 160 LYASAKNGWASLN 172 (194)
T ss_pred EEeehhccccccc
Confidence 9999999988733
No 143
>PRK04213 GTP-binding protein; Provisional
Probab=99.90 E-value=6.9e-23 Score=151.77 Aligned_cols=155 Identities=20% Similarity=0.177 Sum_probs=101.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCc-----------ccccccc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-----------EKFGGLR 79 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~-----------~~~~~~~ 79 (221)
.+.++|+++|.+|||||||++++.++.+. .....+++......... .+.+|||||. +.++..+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~--~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVR--VGKRPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 35689999999999999999998876643 23344666655544333 5899999993 4444444
Q ss_pred ccccc----cccEEEEEEECCChhhhcc---------H-HHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhc
Q 027607 80 DGYYI----HGQCAIIMFDVTARLTYKN---------V-PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK 145 (221)
Q Consensus 80 ~~~~~----~~d~~i~v~d~~~~~s~~~---------~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 145 (221)
..++. .++++++|+|.+....+.. . ..+...+.. .+.|+++|+||+|+.+.. ......+....
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~ 157 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR-DEVLDEIAERL 157 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-HHHHHHHHHHh
Confidence 44443 3578888888764322100 0 111222222 379999999999986543 12222333333
Q ss_pred CC---------eEEEecccCCCChHHHHHHHHHHHhCCC
Q 027607 146 NL---------QYYEISAKSNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 146 ~~---------~~~~~s~~~~~gv~~~~~~l~~~l~~~~ 175 (221)
++ .++++||++| |+++++++|++.+....
T Consensus 158 ~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 158 GLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred cCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 33 5799999999 99999999999865543
No 144
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.89 E-value=4.1e-22 Score=149.55 Aligned_cols=164 Identities=34% Similarity=0.521 Sum_probs=132.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
+.+||+++|+.|||||||+++|..+.+...+.++.+..+...........+.+.+|||+|+++++.++..|+..++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 44999999999999999999999999988888888777766666666558889999999999999999999999999999
Q ss_pred EEECCC-hhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCccccH-------------HH-HHHHhh---cCCeEEEe
Q 027607 92 MFDVTA-RLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA-------------KQ-VTFHRK---KNLQYYEI 152 (221)
Q Consensus 92 v~d~~~-~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~-------------~~-~~~~~~---~~~~~~~~ 152 (221)
|+|.++ ..+++....|...+.... ...|+++|+||+|+..+.... .. ...... ....++.+
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 999999 445666778888887766 479999999999997653211 11 111111 13348999
Q ss_pred ccc--CCCChHHHHHHHHHHHhCCC
Q 027607 153 SAK--SNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 153 s~~--~~~gv~~~~~~l~~~l~~~~ 175 (221)
|+. .+.++.++|..+.+.+....
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhh
Confidence 999 99999999999999886543
No 145
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=2.1e-22 Score=164.09 Aligned_cols=153 Identities=23% Similarity=0.240 Sum_probs=112.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc--------cccc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGY 82 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~--------~~~~ 82 (221)
.+.++|+++|++|||||||+|+|+.... ..+....+++.+.....+..++..+.+|||||....... ...+
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~-aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDR-AIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 3558999999999999999999776532 233445666666555544445567899999998654332 2356
Q ss_pred cccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~ 162 (221)
++.+|++++|+|++++.+++.. |+..+.. .+.|+++|+||+|+... +...+....+.+++.+|+++ .|+++
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~~~----~~~~~~~~~~~~~~~vSak~-~gI~~ 350 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLKIN----SLEFFVSSKVLNSSNLSAKQ-LKIKA 350 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCCCc----chhhhhhhcCCceEEEEEec-CCHHH
Confidence 7899999999999988776654 5554432 37899999999998644 12233455667889999998 69999
Q ss_pred HHHHHHHHHhC
Q 027607 163 PFLYLARKLAG 173 (221)
Q Consensus 163 ~~~~l~~~l~~ 173 (221)
+++.|.+.+..
T Consensus 351 ~~~~L~~~i~~ 361 (442)
T TIGR00450 351 LVDLLTQKINA 361 (442)
T ss_pred HHHHHHHHHHH
Confidence 99999888765
No 146
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=3e-22 Score=160.57 Aligned_cols=162 Identities=16% Similarity=0.125 Sum_probs=116.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc-EEEEEEEecCCcccccc----cc---ccccccc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGG----LR---DGYYIHG 86 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~D~~g~~~~~~----~~---~~~~~~~ 86 (221)
.|+|+|.||||||||+|+|+... ....+.+++|.......+... ...+.++||||...-.. +. ...+..+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k--~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK--PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc--ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 69999999999999999977544 355667777777776665443 34699999999643211 11 1236788
Q ss_pred cEEEEEEECC---ChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCccccHHHH-HHHhhcC--CeEEEecccCC
Q 027607 87 QCAIIMFDVT---ARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKN--LQYYEISAKSN 157 (221)
Q Consensus 87 d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~--~~~~~~s~~~~ 157 (221)
+++++|+|++ ....++....|...+..+. ...|+++|+||+|+.......+.. .+....+ ..++.+||+++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 9999999988 4455666667777766543 368999999999986543222222 2333333 36899999999
Q ss_pred CChHHHHHHHHHHHhCCCCCc
Q 027607 158 YNFEKPFLYLARKLAGDPNLH 178 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~ 178 (221)
.|+++++.+|.+.+...+..+
T Consensus 319 ~GIdeLl~~I~~~L~~~~~~~ 339 (390)
T PRK12298 319 LGVKELCWDLMTFIEENPREE 339 (390)
T ss_pred cCHHHHHHHHHHHhhhCcccC
Confidence 999999999999887766543
No 147
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.89 E-value=2.6e-22 Score=164.39 Aligned_cols=150 Identities=18% Similarity=0.193 Sum_probs=110.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc--------ccccc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYY 83 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~--------~~~~~ 83 (221)
..++|+++|.+|||||||+|+|+.... ....+..+++.+.....+...+..+.+|||||....... ...++
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~-a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEER-AIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 458999999999999999999876543 223445555655544444444568899999998654332 12357
Q ss_pred ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHH
Q 027607 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~ 163 (221)
..+|++++|+|++++.+++....|.. ..+.|+++|+||+|+....... ...+.+++.+|+++|.|++++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~GI~~L 361 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEGIDEL 361 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCCHHHH
Confidence 88999999999998877765444433 3478999999999986432221 334567899999999999999
Q ss_pred HHHHHHHHhC
Q 027607 164 FLYLARKLAG 173 (221)
Q Consensus 164 ~~~l~~~l~~ 173 (221)
+++|.+.+..
T Consensus 362 ~~~L~~~l~~ 371 (449)
T PRK05291 362 REAIKELAFG 371 (449)
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 148
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.89 E-value=4.7e-22 Score=143.07 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=104.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec-CcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
.|+|+|++|||||||+++|..+.+..........+......... .....+.+|||||+..+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 59999999999999999988776654322222222222222222 13578999999999888888788889999999999
Q ss_pred ECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH--HHH-HHH------hhcCCeEEEecccCCCChHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--KQV-TFH------RKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~-~~~------~~~~~~~~~~s~~~~~gv~~~~ 164 (221)
|+++....+.. ..+..+.. .+.|+++|+||+|+....... ... ... ....++++++|+.+|.|+.+++
T Consensus 82 d~~~~~~~~~~-~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 158 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLL 158 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHH
Confidence 99875322211 11222222 378999999999986432111 111 111 1123679999999999999999
Q ss_pred HHHHHHH
Q 027607 165 LYLARKL 171 (221)
Q Consensus 165 ~~l~~~l 171 (221)
++|.+..
T Consensus 159 ~~l~~~~ 165 (168)
T cd01887 159 EAILLLA 165 (168)
T ss_pred HHHHHhh
Confidence 9998753
No 149
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.89 E-value=6e-22 Score=139.47 Aligned_cols=150 Identities=39% Similarity=0.662 Sum_probs=117.7
Q ss_pred EEcCCCCcHHHHHHHHhcCcc-CCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEECC
Q 027607 18 IVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT 96 (221)
Q Consensus 18 v~G~~gsGKStL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 96 (221)
|+|++|+|||||+++++.... .....++. ................+.+||++|..........+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999887666 34444444 6666666666667889999999998887777778889999999999999
Q ss_pred ChhhhccHHHHH--HHHHhhcCCCCEEEEEeCCCcCCccccHH---HHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 97 ARLTYKNVPTWH--RDLCRVCENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 97 ~~~s~~~~~~~~--~~~~~~~~~~p~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
+..++.....|. ........+.|+++|+||+|+........ ..........+++.+|+..+.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999888887762 22223346899999999999876443333 2344555678899999999999999999875
No 150
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.89 E-value=6.8e-22 Score=140.48 Aligned_cols=147 Identities=18% Similarity=0.153 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc--------ccccccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH 85 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~--------~~~~~~~ 85 (221)
++|+++|++|+|||||+++++.... ....+..+++.......+......+.+|||||....... ....+..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDR-AIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCce-EeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 5899999999999999999776543 222334444444333333334568899999997654322 1235678
Q ss_pred ccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~ 165 (221)
+|++++|+|++++.+......+.. ....|+++|+||+|+...... .......+++++|+.++.|+.+++.
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHHHHHH
Confidence 999999999998776655544332 348999999999998754333 3344567899999999999999999
Q ss_pred HHHHHH
Q 027607 166 YLARKL 171 (221)
Q Consensus 166 ~l~~~l 171 (221)
+|...+
T Consensus 151 ~l~~~~ 156 (157)
T cd04164 151 ALLELA 156 (157)
T ss_pred HHHHhh
Confidence 988753
No 151
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.88 E-value=8.6e-22 Score=140.27 Aligned_cols=146 Identities=16% Similarity=0.137 Sum_probs=101.5
Q ss_pred EEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc------cccccc--cccEE
Q 027607 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYYI--HGQCA 89 (221)
Q Consensus 18 v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~------~~~~~~--~~d~~ 89 (221)
++|.+|||||||++++..........+..+.+.....+.++ +..+.+|||||...+... +..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG--GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC--CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 58999999999999987665332222222223333333333 367899999998766543 344554 89999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc-ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
++|+|+++.... ..+...+.. .++|+++|+||+|+.+.. .......+....+.+++++|+.+|.|+.++++++.
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~ 153 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLE--LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIA 153 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHH--cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHH
Confidence 999999875432 233333332 378999999999986543 22233455566678999999999999999999998
Q ss_pred HH
Q 027607 169 RK 170 (221)
Q Consensus 169 ~~ 170 (221)
+.
T Consensus 154 ~~ 155 (158)
T cd01879 154 EL 155 (158)
T ss_pred HH
Confidence 75
No 152
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.88 E-value=1.2e-22 Score=136.09 Aligned_cols=155 Identities=22% Similarity=0.381 Sum_probs=126.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
.++.+.++|..+||||||+|.+..|.+.....++.|.....+ ..+.+.+.+||.+|+..++++|..|++.++++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~----tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEe----ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 468899999999999999999888888888888888766654 3478899999999999999999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~~~ 164 (221)
|+|+.++......+..+..+... ..++|+++.+||.|+++.-......... ....+.++.+|+++..+++-+.
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~ 174 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITL 174 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHH
Confidence 99999988776666555554433 2589999999999998765444433222 2234568999999999999999
Q ss_pred HHHHHH
Q 027607 165 LYLARK 170 (221)
Q Consensus 165 ~~l~~~ 170 (221)
.||.+.
T Consensus 175 ~Wli~h 180 (186)
T KOG0075|consen 175 DWLIEH 180 (186)
T ss_pred HHHHHH
Confidence 999875
No 153
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.88 E-value=6e-22 Score=134.60 Aligned_cols=114 Identities=27% Similarity=0.493 Sum_probs=87.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccC--CcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFE--KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (221)
||+|+|++|||||||+++|+.+... .......+.+..............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999888775 22333444445544556666666799999999988887777779999999999
Q ss_pred EECCChhhhccHHHH---HHHHHhhcCCCCEEEEEeCCC
Q 027607 93 FDVTARLTYKNVPTW---HRDLCRVCENIPIVLCGNKVD 128 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~---~~~~~~~~~~~p~ivv~nK~D 128 (221)
||++++.+++.+..+ +..+.....+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999999887544 555555556899999999998
No 154
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=2.9e-21 Score=145.17 Aligned_cols=168 Identities=17% Similarity=0.152 Sum_probs=124.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc--------cc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DG 81 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~--------~~ 81 (221)
..+.--|+++|.||||||||+|+++ |......++.+.+|+......+..+..++.++||||...-+... ..
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~-G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALV-GQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHh-cCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 4566789999999999999999955 55567888899999999988888888999999999965433222 33
Q ss_pred ccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc-HHHHHHHhh--cCCeEEEecccCCC
Q 027607 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQVTFHRK--KNLQYYEISAKSNY 158 (221)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~--~~~~~~~~s~~~~~ 158 (221)
.+..+|+++||+|++....-.+ ...++.+.. .+.|+++++||+|....... ....+.... .....+++||+.|.
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGD-EFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD 158 (298)
T ss_pred HhccCcEEEEEEeccccCCccH-HHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence 4778999999999987543221 122333333 36899999999997654442 222222222 23468999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCcccc
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVE 181 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ 181 (221)
|+..+.+.+...+..++..+.-|
T Consensus 159 n~~~L~~~i~~~Lpeg~~~yp~d 181 (298)
T COG1159 159 NVDTLLEIIKEYLPEGPWYYPED 181 (298)
T ss_pred CHHHHHHHHHHhCCCCCCcCChh
Confidence 99999999999988888766433
No 155
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=7.3e-22 Score=131.24 Aligned_cols=160 Identities=21% Similarity=0.318 Sum_probs=130.5
Q ss_pred CcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccc
Q 027607 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~ 86 (221)
+.+..++++|+.+|-.++||||++..+..+.. ....+|.|+....+++ +++.+.+||.+|+...+.+|++|+...
T Consensus 11 k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gt 85 (180)
T KOG0071|consen 11 KIFGNKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGT 85 (180)
T ss_pred HHhCcccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCC
Confidence 34567899999999999999999999776654 4557788888887776 789999999999999999999999999
Q ss_pred cEEEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHH-----HhhcCCeEEEecccCCCC
Q 027607 87 QCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYN 159 (221)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~g 159 (221)
.++|||+|+.+....+..+..+..+... ....++++..||.|+++....++.... .+...+.+.++++.+|.|
T Consensus 86 qglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdg 165 (180)
T KOG0071|consen 86 QGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDG 165 (180)
T ss_pred ceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchh
Confidence 9999999999887777666555544332 247899999999999987776665433 333456688899999999
Q ss_pred hHHHHHHHHHHH
Q 027607 160 FEKPFLYLARKL 171 (221)
Q Consensus 160 v~~~~~~l~~~l 171 (221)
+.+-+.||...+
T Consensus 166 L~eglswlsnn~ 177 (180)
T KOG0071|consen 166 LKEGLSWLSNNL 177 (180)
T ss_pred HHHHHHHHHhhc
Confidence 999999988753
No 156
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.88 E-value=8.6e-22 Score=154.97 Aligned_cols=156 Identities=16% Similarity=0.163 Sum_probs=110.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc-EEEEEEEecCCcccc----ccccccc---ccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKF----GGLRDGY---YIH 85 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~D~~g~~~~----~~~~~~~---~~~ 85 (221)
-.|+++|.+|||||||++++..... .....+.+|..+....+... ...+.+||+||.... ..+...+ +..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~--~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc--cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 4689999999999999999776542 22333344444443333322 378999999997432 1233334 346
Q ss_pred ccEEEEEEECCCh---hhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCccccHHHH-HHHhhcCCeEEEecccCCC
Q 027607 86 GQCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNY 158 (221)
Q Consensus 86 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~ 158 (221)
++++++|+|+++. .+++.+..|...+..+. .++|+++|+||+|+.......+.. .+....+.+++++||+++.
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCc
Confidence 8999999999976 56777777777776543 478999999999986543322222 3444556789999999999
Q ss_pred ChHHHHHHHHHHH
Q 027607 159 NFEKPFLYLARKL 171 (221)
Q Consensus 159 gv~~~~~~l~~~l 171 (221)
|+++++.+|.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998754
No 157
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.88 E-value=5.1e-22 Score=143.89 Aligned_cols=151 Identities=15% Similarity=0.111 Sum_probs=103.4
Q ss_pred EEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc-EEEEEEEecCCccc----ccccc---ccccccccEE
Q 027607 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEK----FGGLR---DGYYIHGQCA 89 (221)
Q Consensus 18 v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~D~~g~~~----~~~~~---~~~~~~~d~~ 89 (221)
++|++|||||||+++|.+... ......+++.......+... ...+.+|||||... ...+. ..++..+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP--KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc--cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 589999999999999876653 12222333333322223233 56789999999632 12222 2346789999
Q ss_pred EEEEECCCh------hhhccHHHHHHHHHhhc--------CCCCEEEEEeCCCcCCccccHHH--HHHHhhcCCeEEEec
Q 027607 90 IIMFDVTAR------LTYKNVPTWHRDLCRVC--------ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEIS 153 (221)
Q Consensus 90 i~v~d~~~~------~s~~~~~~~~~~~~~~~--------~~~p~ivv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~s 153 (221)
++|+|+++. .++.....|...+.... .+.|+++|+||+|+......... ..........++.+|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 999999987 46666666666665432 37899999999998654333222 233444567799999
Q ss_pred ccCCCChHHHHHHHHHH
Q 027607 154 AKSNYNFEKPFLYLARK 170 (221)
Q Consensus 154 ~~~~~gv~~~~~~l~~~ 170 (221)
++++.|++++++++.+.
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999988763
No 158
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=1.1e-21 Score=165.14 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=115.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc-------cCCcccC------CcceeeeeeEEEe-----cCcEEEEEEEecCCcccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGE-------FEKKYEP------TIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKF 75 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~i~~~D~~g~~~~ 75 (221)
-+|+++|+.++|||||+++|+... +...+.. ..|.+.......+ ++..+.+.+|||||+.++
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 489999999999999999988642 1122222 2366666544433 345689999999999999
Q ss_pred ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC---eEEEe
Q 027607 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEI 152 (221)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~ 152 (221)
...+..+++.+|++++|+|+++..+.+....|..... .+.|+++|+||+|+.+........++....++ .++++
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~v 160 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILA 160 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEe
Confidence 8888889999999999999999877766666654432 37899999999998653322222233333444 48999
Q ss_pred cccCCCChHHHHHHHHHHH
Q 027607 153 SAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 153 s~~~~~gv~~~~~~l~~~l 171 (221)
||++|.|+++++++|.+.+
T Consensus 161 SAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 161 SAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred eccCCCCHHHHHHHHHHhC
Confidence 9999999999999999865
No 159
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=9.4e-22 Score=162.57 Aligned_cols=153 Identities=22% Similarity=0.221 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc--------ccccccccccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYIH 85 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~--------~~~~~~~~~~~ 85 (221)
.+|+|+|.+|||||||+|+|+.+.. ..+..+.|++.+.........+..+.+|||||.+. +...+..++..
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~-~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRRE-AVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRT 117 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCc-ccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHh
Confidence 6899999999999999999876553 33456777776665555444456789999999753 22233456789
Q ss_pred ccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC-eEEEecccCCCChHHHH
Q 027607 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPF 164 (221)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~gv~~~~ 164 (221)
+|++++|+|+++..++.. ..+...+.. .++|+++|+||+|+..... +...+. ..++ ..+++||++|.|+.+++
T Consensus 118 aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~~~~--~~~~~~-~~g~~~~~~iSA~~g~gi~eL~ 191 (472)
T PRK03003 118 ADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDERGEA--DAAALW-SLGLGEPHPVSALHGRGVGDLL 191 (472)
T ss_pred CCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCccch--hhHHHH-hcCCCCeEEEEcCCCCCcHHHH
Confidence 999999999998765432 233333433 3799999999999864321 111121 2232 35789999999999999
Q ss_pred HHHHHHHhC
Q 027607 165 LYLARKLAG 173 (221)
Q Consensus 165 ~~l~~~l~~ 173 (221)
++|+..+..
T Consensus 192 ~~i~~~l~~ 200 (472)
T PRK03003 192 DAVLAALPE 200 (472)
T ss_pred HHHHhhccc
Confidence 999988754
No 160
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=2.5e-21 Score=156.08 Aligned_cols=159 Identities=16% Similarity=0.171 Sum_probs=114.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc-EEEEEEEecCCccc----cccccccc---cccc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEK----FGGLRDGY---YIHG 86 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~D~~g~~~----~~~~~~~~---~~~~ 86 (221)
.|+++|.+|||||||+++++.... .....+.+|..+....+... ...+.+||+||... ...+...+ +..+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~--kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP--KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC--ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 799999999999999999776542 23445556666655544333 46799999999643 12233334 4458
Q ss_pred cEEEEEEECCCh---hhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCCh
Q 027607 87 QCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 87 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv 160 (221)
+++++|+|+++. .+++....|...+..+. .++|.++|+||+|+... ......+....+.+++++||+++.|+
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~l~~~i~~iSA~tgeGI 315 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEKLGPKVFPISALTGQGL 315 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHHhCCcEEEEeCCCCCCH
Confidence 999999999864 56666677777776653 37899999999998532 22233444445578999999999999
Q ss_pred HHHHHHHHHHHhCCCCC
Q 027607 161 EKPFLYLARKLAGDPNL 177 (221)
Q Consensus 161 ~~~~~~l~~~l~~~~~~ 177 (221)
++++.+|.+.+...+..
T Consensus 316 ~eL~~~L~~~l~~~~~~ 332 (424)
T PRK12297 316 DELLYAVAELLEETPEF 332 (424)
T ss_pred HHHHHHHHHHHHhCccc
Confidence 99999999988776643
No 161
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.88 E-value=1.1e-21 Score=155.68 Aligned_cols=150 Identities=15% Similarity=0.112 Sum_probs=103.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeE--EEecCcEEEEEEEecCCccc---------ccccccc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD--FFTNCGKIRFYCWDTAGQEK---------FGGLRDG 81 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~D~~g~~~---------~~~~~~~ 81 (221)
-++|+++|.+|||||||+|+|++.... .....+.|.+... +.+. ++..+.+|||+|... +... ..
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~--v~~~~~tT~d~~~~~i~~~-~~~~i~l~DT~G~~~~l~~~lie~f~~t-le 264 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVY--AADQLFATLDPTTRRLDLP-DGGEVLLTDTVGFIRDLPHELVAAFRAT-LE 264 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcee--eccCCccccCCEEEEEEeC-CCceEEEEecCcccccCCHHHHHHHHHH-HH
Confidence 489999999999999999998765432 1222333333333 3332 345899999999721 1111 12
Q ss_pred ccccccEEEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCCh
Q 027607 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv 160 (221)
.+.++|++++|+|++++.++.....|...+.... .+.|+++|+||+|+.+... . ........+++.+||++|.|+
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~---v-~~~~~~~~~~i~iSAktg~GI 340 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR---I-ERLEEGYPEAVFVSAKTGEGL 340 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh---H-HHHHhCCCCEEEEEccCCCCH
Confidence 3678999999999999887777666655554432 4789999999999864211 1 111122346899999999999
Q ss_pred HHHHHHHHHH
Q 027607 161 EKPFLYLARK 170 (221)
Q Consensus 161 ~~~~~~l~~~ 170 (221)
++++.+|.+.
T Consensus 341 ~eL~~~I~~~ 350 (351)
T TIGR03156 341 DLLLEAIAER 350 (351)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 162
>PRK00089 era GTPase Era; Reviewed
Probab=99.88 E-value=4.6e-21 Score=149.81 Aligned_cols=164 Identities=16% Similarity=0.159 Sum_probs=111.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc--------ccccc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGY 82 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~--------~~~~~ 82 (221)
.+.-.|+|+|++|||||||+|++++... ....+...++..............+.+|||||...... .....
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~-~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKI-SIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCce-eecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 3567899999999999999999775544 33444555555554444443457899999999654321 22334
Q ss_pred cccccEEEEEEECCChhhhccHHHH-HHHHHhhcCCCCEEEEEeCCCcCC-ccccHHHH-HHHhhc-CCeEEEecccCCC
Q 027607 83 YIHGQCAIIMFDVTARLTYKNVPTW-HRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKK-NLQYYEISAKSNY 158 (221)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~-~~~~~~-~~~~~~~s~~~~~ 158 (221)
+..+|++++|+|+++.. .....+ ...+.. .+.|+++|+||+|+.. ........ .+.... ...++++|++++.
T Consensus 82 ~~~~D~il~vvd~~~~~--~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 82 LKDVDLVLFVVDADEKI--GPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred HhcCCEEEEEEeCCCCC--ChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 67899999999998832 222222 222221 3689999999999873 22222222 233322 3678999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCcc
Q 027607 159 NFEKPFLYLARKLAGDPNLHF 179 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~ 179 (221)
|+++++++|.+.+..++..+.
T Consensus 158 gv~~L~~~L~~~l~~~~~~y~ 178 (292)
T PRK00089 158 NVDELLDVIAKYLPEGPPYYP 178 (292)
T ss_pred CHHHHHHHHHHhCCCCCCCCC
Confidence 999999999998877775543
No 163
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=1.3e-21 Score=139.06 Aligned_cols=147 Identities=20% Similarity=0.143 Sum_probs=100.5
Q ss_pred EEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc--------ccccccccccE
Q 027607 17 VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYYIHGQC 88 (221)
Q Consensus 17 ~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~--------~~~~~~~~~d~ 88 (221)
+++|.+|||||||+++++.... .......+++...........+..+.+|||||...... .....+..+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRD-AIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcE-EeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 5899999999999999876542 12233344444444333343457899999999876443 22345778999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC-eEEEecccCCCChHHHHHHH
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~gv~~~~~~l 167 (221)
+++|+|+.+..+.... .+...+.. .+.|+++|+||+|+.+.... .......+. .++++|+++|.|+.+++++|
T Consensus 80 ii~v~d~~~~~~~~~~-~~~~~~~~--~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 80 ILFVVDGREGLTPADE-EIAKYLRK--SKKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred EEEEEeccccCCccHH-HHHHHHHh--cCCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEecccCCCHHHHHHHH
Confidence 9999999876544332 22222322 26999999999998764332 222223444 68999999999999999999
Q ss_pred HHH
Q 027607 168 ARK 170 (221)
Q Consensus 168 ~~~ 170 (221)
.+.
T Consensus 154 ~~~ 156 (157)
T cd01894 154 LEL 156 (157)
T ss_pred Hhh
Confidence 875
No 164
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.87 E-value=4.1e-21 Score=142.23 Aligned_cols=111 Identities=16% Similarity=0.149 Sum_probs=75.8
Q ss_pred EEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH----H
Q 027607 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----K 137 (221)
Q Consensus 62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----~ 137 (221)
..+.+|||||++.+...+...+..+|++++|+|++++.........+..+.. ....|+++|+||+|+.+..... +
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~~~iiivvNK~Dl~~~~~~~~~~~~ 161 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGLKHIIIVQNKIDLVKEEQALENYEQ 161 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCCCcEEEEEEchhccCHHHHHHHHHH
Confidence 6789999999988776666677889999999999874221111222222222 2245799999999986532211 1
Q ss_pred HHHHHhh---cCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607 138 QVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 138 ~~~~~~~---~~~~~~~~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
...+... .+.+++++|+++|.|+++++++|.+.+..
T Consensus 162 i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 162 IKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 1122222 25679999999999999999999986544
No 165
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.86 E-value=3.5e-21 Score=141.04 Aligned_cols=154 Identities=18% Similarity=0.121 Sum_probs=106.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccC--------------CcceeeeeeEEEecCcEEEEEEEecCCccccccccc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--------------TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~ 80 (221)
+|+|+|.+|||||||+++++.......... ..+.+.......+......+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 589999999999999999877655432211 112222222223333457899999999888877778
Q ss_pred cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH----HHHHHHh-------------
Q 027607 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHR------------- 143 (221)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----~~~~~~~------------- 143 (221)
.++..+|++++|+|+++....... .++..... .+.|+++|+||+|+....... .......
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTR-EHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTR 157 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcc
Confidence 888999999999999876543322 23333332 489999999999987522111 1111221
Q ss_pred -hcCCeEEEecccCCCChHHHHHHHHHHH
Q 027607 144 -KKNLQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 144 -~~~~~~~~~s~~~~~gv~~~~~~l~~~l 171 (221)
....+++++|+++|.|+++++.+|.+.+
T Consensus 158 ~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 158 NGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred cCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 2357799999999999999999999875
No 166
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.86 E-value=4e-21 Score=141.31 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc----cCCcc-c----CCcceeeeeeEEE----------ecCcEEEEEEEecCCccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGE----FEKKY-E----PTIGVEVHPLDFF----------TNCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~----~~~~~-~----~~~~~~~~~~~~~----------~~~~~~~i~~~D~~g~~~ 74 (221)
++|+++|++|+|||||+++|+... +.... . .+.+......... .......+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999987621 11100 1 1222222222221 112367899999999865
Q ss_pred cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc----HHHHHHH-------h
Q 027607 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFH-------R 143 (221)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~-------~ 143 (221)
+..........+|++++|+|+++.........+. +... .+.|+++|+||+|+...... .+..+.. .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI-LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTR 157 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH-cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4332223345679999999998754333322222 1121 26799999999998643221 1111111 1
Q ss_pred hcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607 144 KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 144 ~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
..+++++++|+++|.|+.+++.+|...+..
T Consensus 158 ~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 158 FKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred cCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 245789999999999999999999887643
No 167
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=3.3e-21 Score=159.37 Aligned_cols=159 Identities=19% Similarity=0.238 Sum_probs=110.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc----------ccccc-
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLR- 79 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~----------~~~~~- 79 (221)
...++|+++|.+|||||||+|+|+.... ....+..+++.......+...+..+.+|||||..+ +..+.
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~-~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEER-SVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHH
Confidence 3569999999999999999999886653 23345566665554433333445678999999632 11111
Q ss_pred ccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH----HHH-HHHhhcCCeEEEecc
Q 027607 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQV-TFHRKKNLQYYEISA 154 (221)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----~~~-~~~~~~~~~~~~~s~ 154 (221)
..+++.+|++++|+|+++..+++... ++..+.. .+.|+++|+||+|+.+..... +.. .+......+++++||
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 23467899999999999988877654 3333333 479999999999986432111 111 122223467899999
Q ss_pred cCCCChHHHHHHHHHHHhC
Q 027607 155 KSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 155 ~~~~gv~~~~~~l~~~l~~ 173 (221)
++|.|++++|..+.+.+..
T Consensus 365 k~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 365 KTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987644
No 168
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=2.1e-20 Score=134.93 Aligned_cols=154 Identities=19% Similarity=0.207 Sum_probs=100.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc-----------ccc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------RDG 81 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~-----------~~~ 81 (221)
.++|+++|.+|+|||||+++++...... .....+++.......+...+..+.+|||||....... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI-VSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee-ccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 5899999999999999999987654321 1222333333332222223456889999996543111 112
Q ss_pred ccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc--ccHHHH-HHHhhc----CCeEEEecc
Q 027607 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQV-TFHRKK----NLQYYEISA 154 (221)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~-~~~~~~----~~~~~~~s~ 154 (221)
.+..+|++++|+|++++.+..... +...+.. .+.|+++++||+|+.+.. ...... ...... ..+++++|+
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLR-IAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA 157 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence 356899999999999887655432 2222222 378999999999986542 222211 122222 367999999
Q ss_pred cCCCChHHHHHHHHHH
Q 027607 155 KSNYNFEKPFLYLARK 170 (221)
Q Consensus 155 ~~~~gv~~~~~~l~~~ 170 (221)
+++.|+.++++++.+.
T Consensus 158 ~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 158 LTGQGVDKLFDAIDEV 173 (174)
T ss_pred cCCCCHHHHHHHHHHh
Confidence 9999999999998764
No 169
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=1.6e-20 Score=154.31 Aligned_cols=158 Identities=17% Similarity=0.151 Sum_probs=110.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc-----------
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----------- 79 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~----------- 79 (221)
.+.++|+++|.+|+|||||+|+++.... ....+..+++.......+...+..+.+|||||........
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEER-VIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCe-eecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 4568999999999999999999876543 2234456666666555554445589999999976544322
Q ss_pred ccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcC-CccccHHHHHHH-----hhcCCeEEEec
Q 027607 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NRQVKAKQVTFH-----RKKNLQYYEIS 153 (221)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~~~~~-----~~~~~~~~~~s 153 (221)
..+++.+|++++|+|++++.+.+... +...+.. .+.|+++|+||+|+. +.....+..... ....++++++|
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 23578899999999999887665543 2233322 378999999999987 221111211111 11357899999
Q ss_pred ccCCCChHHHHHHHHHHHh
Q 027607 154 AKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 154 ~~~~~gv~~~~~~l~~~l~ 172 (221)
|++|.|+.++|.++.+.+.
T Consensus 326 A~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988654
No 170
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.86 E-value=2.4e-20 Score=133.60 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=102.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc--------cccccc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYY 83 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~--------~~~~~~ 83 (221)
...+|+++|++|||||||+++++..... ........+..............+.+|||||...... .....+
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKIS-IVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceE-eccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 3589999999999999999997755432 2222223333333333444457899999999654322 223347
Q ss_pred ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC-ccccHHHH-HHHhhc-CCeEEEecccCCCCh
Q 027607 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKK-NLQYYEISAKSNYNF 160 (221)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~-~~~~~~-~~~~~~~s~~~~~gv 160 (221)
..+|++++|+|+++.... ....+...+... +.|+++|+||+|+.. .....+.. ...... ..+++.+|++++.|+
T Consensus 81 ~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 81 KDVDLVLFVVDASEPIGE-GDEFILELLKKS--KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred HhCCEEEEEEECCCccCc-hHHHHHHHHHHh--CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 789999999999987221 122223333332 689999999999873 32223322 222333 367899999999999
Q ss_pred HHHHHHHHHH
Q 027607 161 EKPFLYLARK 170 (221)
Q Consensus 161 ~~~~~~l~~~ 170 (221)
++++.+|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 171
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.86 E-value=1.4e-20 Score=138.84 Aligned_cols=158 Identities=15% Similarity=0.097 Sum_probs=106.2
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcc----------ccccc
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE----------KFGGL 78 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~----------~~~~~ 78 (221)
.....++|+++|.+|||||||+++++.+.+...+.++.+.+........ ...+.+|||||.. .+...
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 3457799999999999999999998877666667777776655443332 2579999999943 22223
Q ss_pred ccccccc---ccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHH----HHHHHhhcCCeEEE
Q 027607 79 RDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHRKKNLQYYE 151 (221)
Q Consensus 79 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~ 151 (221)
...++.. .+++++|+|++.+...... .+...+.. .+.|+++++||+|+........ ...........+++
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 173 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVIL 173 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEE
Confidence 3334443 4678888888765433221 11222222 3789999999999864322221 22222333678999
Q ss_pred ecccCCCChHHHHHHHHHHHh
Q 027607 152 ISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 152 ~s~~~~~gv~~~~~~l~~~l~ 172 (221)
+|+++|.|++++++.|...+.
T Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 174 FSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEcCCCCCHHHHHHHHHHHhc
Confidence 999999999999999987654
No 172
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=5.6e-22 Score=136.56 Aligned_cols=160 Identities=24% Similarity=0.424 Sum_probs=126.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCcc--------CCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG 81 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~ 81 (221)
....+.|+++|+.++|||||+.+ +...+ .....++.|.....+.+ ....+.+||..|++..+++|..
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~-~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v----~~~~l~fwdlgGQe~lrSlw~~ 88 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEA-LKTDFSKAYGGLNPSKITPTVGLNIGTIEV----CNAPLSFWDLGGQESLRSLWKK 88 (197)
T ss_pred hhhhhhheeeccccCCchhHHHH-HHHHHHhhhcCCCHHHeecccceeecceee----ccceeEEEEcCChHHHHHHHHH
Confidence 45678999999999999999987 33222 23444555544444433 4568999999999999999999
Q ss_pred ccccccEEEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH------hhcCCeEEEec
Q 027607 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH------RKKNLQYYEIS 153 (221)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~------~~~~~~~~~~s 153 (221)
||..++++++++|+++++.|+.....++.+... ..+.|+++.+||.|+.+.....+..... .+....+.++|
T Consensus 89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvS 168 (197)
T KOG0076|consen 89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVS 168 (197)
T ss_pred HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccch
Confidence 999999999999999999998877766665443 3689999999999998866555543222 23346789999
Q ss_pred ccCCCChHHHHHHHHHHHhCC
Q 027607 154 AKSNYNFEKPFLYLARKLAGD 174 (221)
Q Consensus 154 ~~~~~gv~~~~~~l~~~l~~~ 174 (221)
+++|.|+++..+|+...+..+
T Consensus 169 al~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 169 ALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhcccHHHHHHHHHHHHhhc
Confidence 999999999999999998877
No 173
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.86 E-value=1.6e-20 Score=149.09 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=120.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccc--------c
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG--------Y 82 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~--------~ 82 (221)
..-++++++|.||||||||+|+ +.+.....+...+|+|++..+..++-+++.+.+.||+|..+....... .
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNa-L~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNA-LLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHH-HhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 4568999999999999999999 556666788999999999999999999999999999997655444332 3
Q ss_pred cccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~ 162 (221)
+..+|.+++|+|++.+.+-.+... +. ....+.|+++|.||.|+......... ....+..++.+|+++|.|++.
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~~-~~---~~~~~~~~i~v~NK~DL~~~~~~~~~---~~~~~~~~i~iSa~t~~Gl~~ 366 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLAL-IE---LLPKKKPIIVVLNKADLVSKIELESE---KLANGDAIISISAKTGEGLDA 366 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHHH-HH---hcccCCCEEEEEechhcccccccchh---hccCCCceEEEEecCccCHHH
Confidence 778999999999998633222211 11 22347999999999999765443222 223344789999999999999
Q ss_pred HHHHHHHHHhCC
Q 027607 163 PFLYLARKLAGD 174 (221)
Q Consensus 163 ~~~~l~~~l~~~ 174 (221)
+.+.|.+.+...
T Consensus 367 L~~~i~~~~~~~ 378 (454)
T COG0486 367 LREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHhhc
Confidence 999999877655
No 174
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=1e-20 Score=154.49 Aligned_cols=160 Identities=17% Similarity=0.129 Sum_probs=112.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc----cccc---ccccccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----GGLR---DGYYIHG 86 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~----~~~~---~~~~~~~ 86 (221)
..|+|+|.+|||||||+|+|..... .....+++|..+....+......|.+||+||.... ..+. ...+..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akp--kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKP--KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCc--cccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 4799999999999999999775532 34555667777766666656678999999996321 1111 2235678
Q ss_pred cEEEEEEECCCh----hhhccHHHHHHHHHhhc------------CCCCEEEEEeCCCcCCccccHH-HHHHHhhcCCeE
Q 027607 87 QCAIIMFDVTAR----LTYKNVPTWHRDLCRVC------------ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQY 149 (221)
Q Consensus 87 d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~------------~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~~~~~ 149 (221)
+++++|+|+++. ..+..+..+...+..+. ..+|+++|+||+|+.+.....+ ........++++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~V 317 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPV 317 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeE
Confidence 999999999853 24444555554444332 3689999999999865332222 222333457899
Q ss_pred EEecccCCCChHHHHHHHHHHHhCCC
Q 027607 150 YEISAKSNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 150 ~~~s~~~~~gv~~~~~~l~~~l~~~~ 175 (221)
+++|++++.|+++++.+|.+.+....
T Consensus 318 f~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 318 FEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999999876543
No 175
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.86 E-value=9.7e-21 Score=134.75 Aligned_cols=138 Identities=16% Similarity=0.084 Sum_probs=94.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc----ccccccccEEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----DGYYIHGQCAI 90 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~----~~~~~~~d~~i 90 (221)
+|+++|.+|+|||||+|++. +.+.. ...+. ...+... .+|||||.......+ ...+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~-~~~~~-~~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQ-GNYTL-ARKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHc-CCCcc-Cccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999954 44321 11121 1222222 269999973222111 22367899999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC--eEEEecccCCCChHHHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~gv~~~~~~l~ 168 (221)
+|+|+++..++.. .|+..+ ..+.|+++++||+|+.+.. ......+....++ +++++|+++|.|++++|++++
T Consensus 70 ~v~d~~~~~s~~~--~~~~~~---~~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 70 YVHGANDPESRLP--AGLLDI---GVSKRQIAVISKTDMPDAD-VAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred EEEeCCCcccccC--HHHHhc---cCCCCeEEEEEccccCccc-HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHH
Confidence 9999998876643 343332 2367999999999986532 2333455555554 899999999999999999998
Q ss_pred HHH
Q 027607 169 RKL 171 (221)
Q Consensus 169 ~~l 171 (221)
+.+
T Consensus 144 ~~~ 146 (158)
T PRK15467 144 SLT 146 (158)
T ss_pred Hhc
Confidence 865
No 176
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.85 E-value=1.2e-20 Score=137.19 Aligned_cols=148 Identities=15% Similarity=0.121 Sum_probs=98.2
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc----------ccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGG 77 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~----------~~~ 77 (221)
.+....++|+|+|++|+|||||+|+++...+...+.++.+.+.....+..+. .+.+|||||... +..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence 3446789999999999999999999887765555666777666544444332 689999999532 222
Q ss_pred ccccccc---cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc----HHHHHHHhhc--CCe
Q 027607 78 LRDGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRKK--NLQ 148 (221)
Q Consensus 78 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~--~~~ 148 (221)
....+++ .++++++|+|++.+.+..... ++..+.. .+.|+++|+||+|+...... .+........ ...
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence 2233444 357999999998764444332 2233322 27899999999998643211 1222333333 247
Q ss_pred EEEecccCCCChH
Q 027607 149 YYEISAKSNYNFE 161 (221)
Q Consensus 149 ~~~~s~~~~~gv~ 161 (221)
++++|+++|.|++
T Consensus 167 v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 167 VQLFSSLKKTGID 179 (179)
T ss_pred eEEEECCCCCCCC
Confidence 9999999999974
No 177
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.85 E-value=8.1e-20 Score=157.35 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=117.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc----------cc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----------DG 81 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~----------~~ 81 (221)
++++|+++|++|||||||+|++.+... .+.+..|+|...+...+..++..+.+|||||...+.... ..
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 468999999999999999999765433 456778999988888888788899999999987654321 12
Q ss_pred cc--ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC-ccccHHHHHHHhhcCCeEEEecccCCC
Q 027607 82 YY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNY 158 (221)
Q Consensus 82 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (221)
++ ..+|++++|+|+++.+... .+...+... +.|+++++||+|+.+ +.......++....+++++++|+.+|.
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e~--giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~ 154 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERNL---YLTLQLLEL--GIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGR 154 (772)
T ss_pred HHhccCCCEEEEEecCCcchhhH---HHHHHHHHc--CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCC
Confidence 32 3789999999998865322 233333332 799999999999864 334444556677789999999999999
Q ss_pred ChHHHHHHHHHHH
Q 027607 159 NFEKPFLYLARKL 171 (221)
Q Consensus 159 gv~~~~~~l~~~l 171 (221)
|++++.+.+.+..
T Consensus 155 GIdeL~~~I~~~~ 167 (772)
T PRK09554 155 GIEALKLAIDRHQ 167 (772)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999888754
No 178
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.85 E-value=1.6e-20 Score=127.03 Aligned_cols=167 Identities=23% Similarity=0.369 Sum_probs=143.1
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
.+.-.+||+++|++..|||||+-.+..+.+...+..+.|.....+++.+.+..+.+.+||..|++++..+..-....+-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 34457999999999999999999999999988888999999999999999999999999999999999888888889999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC---c----cccHHHHHHHhhcCCeEEEecccCCCChH
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN---R----QVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~---~----~~~~~~~~~~~~~~~~~~~~s~~~~~gv~ 161 (221)
++++||.+.+..+..+..|++..+..+...--++|++|.|.-- + .....+...+.-.+...+.||+....+++
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~ 175 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ 175 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence 9999999999999999999998887654444467899999521 1 22333456667778999999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 027607 162 KPFLYLARKLAGDP 175 (221)
Q Consensus 162 ~~~~~l~~~l~~~~ 175 (221)
++|..+...+..-|
T Consensus 176 KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 176 KIFKIVLAKLFNLP 189 (205)
T ss_pred HHHHHHHHHHhCCc
Confidence 99999888876654
No 179
>PRK11058 GTPase HflX; Provisional
Probab=99.85 E-value=2.3e-20 Score=151.39 Aligned_cols=156 Identities=17% Similarity=0.144 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecC-cEEEEEEEecCCcccc--ccccc------cccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKF--GGLRD------GYYI 84 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~D~~g~~~~--~~~~~------~~~~ 84 (221)
.+|+++|.+|||||||+|+|+..... .....+.|.+.....+.. +...+.+|||+|.... ...+. ..+.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~--v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY--AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee--eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 68999999999999999998765432 223333344433322221 2236789999997331 11222 2357
Q ss_pred cccEEEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCccccHHHHHHHhhcCCe-EEEecccCCCChHH
Q 027607 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEK 162 (221)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~gv~~ 162 (221)
.+|++++|+|++++.++..+..|...+.... .+.|+++|+||+|+...... .... ...+.+ ++.+||++|.|+++
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~--~~~~-~~~~~~~~v~ISAktG~GIde 352 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP--RIDR-DEENKPIRVWLSAQTGAGIPL 352 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH--HHHH-HhcCCCceEEEeCCCCCCHHH
Confidence 8999999999999887777655544443332 37899999999998643111 1111 123444 48899999999999
Q ss_pred HHHHHHHHHhCC
Q 027607 163 PFLYLARKLAGD 174 (221)
Q Consensus 163 ~~~~l~~~l~~~ 174 (221)
++++|.+.+...
T Consensus 353 L~e~I~~~l~~~ 364 (426)
T PRK11058 353 LFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHhhhc
Confidence 999999987543
No 180
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.85 E-value=1.1e-20 Score=125.84 Aligned_cols=157 Identities=20% Similarity=0.316 Sum_probs=124.0
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
..+++||+++|-.++|||||++. +.+.......++.|+........ +.+++.+||++|+...+.+|..||.+.|++
T Consensus 14 t~rEirilllGldnAGKTT~LKq-L~sED~~hltpT~GFn~k~v~~~---g~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQ-LKSEDPRHLTPTNGFNTKKVEYD---GTFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHH-HccCChhhccccCCcceEEEeec---CcEEEEEEecCCccccchhhhhhhhccceE
Confidence 47899999999999999999998 66666677788888777666553 568999999999999999999999999999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHH-----HHHhhcCCeEEEecccCCCChHH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~gv~~ 162 (221)
|+|+|.++...|+.+..-+-++... ....|+.+..||.|+.-.-..++.. .......+.+.+||+.++.|+..
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~d 169 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTD 169 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccC
Confidence 9999999998888766555554433 2578999999999975433333222 12233456788999999999998
Q ss_pred HHHHHHHH
Q 027607 163 PFLYLARK 170 (221)
Q Consensus 163 ~~~~l~~~ 170 (221)
-..|+.+.
T Consensus 170 g~~wv~sn 177 (185)
T KOG0074|consen 170 GSDWVQSN 177 (185)
T ss_pred cchhhhcC
Confidence 88887664
No 181
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.85 E-value=6.7e-20 Score=153.71 Aligned_cols=155 Identities=14% Similarity=0.132 Sum_probs=106.0
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
..+..+|+++|+.++|||||+++|....+.....+.+..+.....+...+. ..+.+|||||++.+..++...+..+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 346689999999999999999998876654433322222222223333222 2789999999999998888889999999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhh-------c--CCeEEEecccCCCCh
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK-------K--NLQYYEISAKSNYNF 160 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-------~--~~~~~~~s~~~~~gv 160 (221)
++|+|+++...-+....+ .... ..+.|+++++||+|+.+... .+....... + ..+++++||++|.|+
T Consensus 163 ILVVda~dgv~~qT~e~i-~~~~--~~~vPiIVviNKiDl~~~~~-e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 163 VLVVAADDGVMPQTIEAI-SHAK--AANVPIIVAINKIDKPEANP-DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEEEECCCCCCHhHHHHH-HHHH--HcCCCEEEEEECcccccCCH-HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 999999875322222211 1111 23789999999999864321 111111111 1 257999999999999
Q ss_pred HHHHHHHHH
Q 027607 161 EKPFLYLAR 169 (221)
Q Consensus 161 ~~~~~~l~~ 169 (221)
++++++|..
T Consensus 239 ~eLl~~I~~ 247 (587)
T TIGR00487 239 DELLDMILL 247 (587)
T ss_pred HHHHHhhhh
Confidence 999999864
No 182
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.84 E-value=8.9e-21 Score=138.95 Aligned_cols=157 Identities=18% Similarity=0.163 Sum_probs=106.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCC----------------cccCCcceeeeeeEEEec--CcEEEEEEEecCCcc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK----------------KYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQE 73 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~--~~~~~i~~~D~~g~~ 73 (221)
+-++|+++|+.++|||||+.+|+...... ......+.+.......+. .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 45899999999999999999988543211 011112333333333443 567899999999998
Q ss_pred ccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH----HHHhh-----
Q 027607 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV----TFHRK----- 144 (221)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~----~~~~~----- 144 (221)
.+.......+..+|++++|+|+.+....+. ...+..+.. .+.|+++|+||+|+.......... .+...
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~--~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE--LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG 158 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH--TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred ceeecccceecccccceeeeeccccccccc-ccccccccc--cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence 887777777889999999999987643322 222233323 388999999999987432222111 12111
Q ss_pred -cCCeEEEecccCCCChHHHHHHHHHHH
Q 027607 145 -KNLQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 145 -~~~~~~~~s~~~~~gv~~~~~~l~~~l 171 (221)
..++++++|+++|.|+.++++.|.+.+
T Consensus 159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 159 EEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 136799999999999999999998854
No 183
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=3.2e-20 Score=152.72 Aligned_cols=148 Identities=22% Similarity=0.186 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc--------ccccccccccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYIH 85 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~--------~~~~~~~~~~~ 85 (221)
++|+++|.+|||||||+|+|+.... .......+++...........+..+.+|||||... +......++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~-~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRD-AIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-eeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 5899999999999999999776543 23344555555544443333447899999999876 22223445789
Q ss_pred ccEEEEEEECCChhhhcc--HHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC-eEEEecccCCCChHH
Q 027607 86 GQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEK 162 (221)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~gv~~ 162 (221)
+|++++|+|+++..+... +..|+. .. +.|+++|+||+|..+.. ..... ....++ .++++|+.+|.|+.+
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~---~~--~~piilv~NK~D~~~~~--~~~~~-~~~lg~~~~~~iSa~~g~gv~~ 152 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILR---KS--NKPVILVVNKVDGPDEE--ADAYE-FYSLGLGEPYPISAEHGRGIGD 152 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH---Hc--CCcEEEEEECccCccch--hhHHH-HHhcCCCCCEEEEeeCCCCHHH
Confidence 999999999987543322 223332 22 78999999999975421 11222 234455 389999999999999
Q ss_pred HHHHHHHH
Q 027607 163 PFLYLARK 170 (221)
Q Consensus 163 ~~~~l~~~ 170 (221)
+++++...
T Consensus 153 l~~~I~~~ 160 (435)
T PRK00093 153 LLDAILEE 160 (435)
T ss_pred HHHHHHhh
Confidence 99999873
No 184
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=4.1e-20 Score=151.86 Aligned_cols=152 Identities=20% Similarity=0.176 Sum_probs=108.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcc--------ccccccccccccc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDGYYIHG 86 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~--------~~~~~~~~~~~~~ 86 (221)
+|+++|.+|||||||+|+|+.+. ...+....|++...........+..+.+|||||.. .+......++..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~-~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKR-DAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC-cceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 58999999999999999977655 33455667777666655555556689999999963 2333345567899
Q ss_pred cEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC-eEEEecccCCCChHHHHH
Q 027607 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~gv~~~~~ 165 (221)
|++++|+|+.+....... .+...+.. .++|+++|+||+|+...... ... ....++ .++++||.+|.|+.++++
T Consensus 80 d~vl~vvD~~~~~~~~d~-~i~~~l~~--~~~piilVvNK~D~~~~~~~--~~~-~~~lg~~~~~~vSa~~g~gv~~ll~ 153 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDE-EIAKWLRK--SGKPVILVANKIDGKKEDAV--AAE-FYSLGFGEPIPISAEHGRGIGDLLD 153 (429)
T ss_pred CEEEEEEeCCCCCCHHHH-HHHHHHHH--hCCCEEEEEECccCCccccc--HHH-HHhcCCCCeEEEeCCcCCChHHHHH
Confidence 999999999875433321 12222332 27899999999998653321 122 234455 699999999999999999
Q ss_pred HHHHHHhC
Q 027607 166 YLARKLAG 173 (221)
Q Consensus 166 ~l~~~l~~ 173 (221)
++.+.+..
T Consensus 154 ~i~~~l~~ 161 (429)
T TIGR03594 154 AILELLPE 161 (429)
T ss_pred HHHHhcCc
Confidence 99987644
No 185
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=2.1e-20 Score=147.97 Aligned_cols=153 Identities=18% Similarity=0.079 Sum_probs=114.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccc---------cccccccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GLRDGYYI 84 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~---------~~~~~~~~ 84 (221)
..|+++|.||||||||+|+|+ +.-...+..++|+|++.+.......+..|.++||+|.+... ......+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~-g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT-GRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh-CCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 679999999999999999955 55567888999999999988888788889999999976432 12233477
Q ss_pred cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHH
Q 027607 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~ 164 (221)
.+|+++||+|.....+-.+- .....++ ..++|+++|+||+|... ......++....--.++.+||..|.|+.++.
T Consensus 83 eADvilfvVD~~~Git~~D~-~ia~~Lr--~~~kpviLvvNK~D~~~--~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLl 157 (444)
T COG1160 83 EADVILFVVDGREGITPADE-EIAKILR--RSKKPVILVVNKIDNLK--AEELAYEFYSLGFGEPVPISAEHGRGIGDLL 157 (444)
T ss_pred hCCEEEEEEeCCCCCCHHHH-HHHHHHH--hcCCCEEEEEEcccCch--hhhhHHHHHhcCCCCceEeehhhccCHHHHH
Confidence 89999999999875443221 1122222 23799999999999752 2222334444444568999999999999999
Q ss_pred HHHHHHHh
Q 027607 165 LYLARKLA 172 (221)
Q Consensus 165 ~~l~~~l~ 172 (221)
+++...+.
T Consensus 158 d~v~~~l~ 165 (444)
T COG1160 158 DAVLELLP 165 (444)
T ss_pred HHHHhhcC
Confidence 99999763
No 186
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=2e-19 Score=148.02 Aligned_cols=158 Identities=16% Similarity=0.142 Sum_probs=110.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc-----------c
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------R 79 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~-----------~ 79 (221)
...++|+++|.+|+|||||+|+++.... ....+..|++.......+...+..+.+|||||....... .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEER-VIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 3579999999999999999999775432 234556677777766655555677899999996432221 1
Q ss_pred ccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHH-----HHhhcCCeEEEecc
Q 027607 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISA 154 (221)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-----~~~~~~~~~~~~s~ 154 (221)
..++..+|++++|+|++++.+.+... +...+.. .++|+++|+||+|+.+.....+... +.....++++++||
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA 326 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE--AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA 326 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence 23567899999999999886665543 2222322 3789999999999874322222111 11223578999999
Q ss_pred cCCCChHHHHHHHHHHHh
Q 027607 155 KSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 155 ~~~~gv~~~~~~l~~~l~ 172 (221)
++|.|+.+++..+.+...
T Consensus 327 ~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 327 LTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999887553
No 187
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.83 E-value=1.3e-19 Score=134.13 Aligned_cols=116 Identities=17% Similarity=0.257 Sum_probs=85.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccc-cEEEEEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG-QCAIIMF 93 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~-d~~i~v~ 93 (221)
+|+++|++|||||||+++|..+.+...+.++. ................+.+||+||+..++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~-~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIE-PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEe-ecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 68999999999999999988877655443331 111111111113457899999999999988888889998 9999999
Q ss_pred ECCCh-hhhccHHHHHHHHHhh----cCCCCEEEEEeCCCcCC
Q 027607 94 DVTAR-LTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKN 131 (221)
Q Consensus 94 d~~~~-~s~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~ 131 (221)
|+.+. .++.....|+..+... ....|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99987 5666666665544321 25899999999999754
No 188
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.83 E-value=8.7e-20 Score=153.86 Aligned_cols=156 Identities=14% Similarity=0.165 Sum_probs=112.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCc--cC-----Ccc------cCCcceeeeeeEEEe-----cCcEEEEEEEecCCccc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGE--FE-----KKY------EPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~--~~-----~~~------~~~~~~~~~~~~~~~-----~~~~~~i~~~D~~g~~~ 74 (221)
--+|+++|+.++|||||+.+|+... .. ..+ ....|.+.......+ ++..+.+.+|||||+.+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 3589999999999999999988632 11 111 123355554433333 34468899999999999
Q ss_pred cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC---eEEE
Q 027607 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYE 151 (221)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~ 151 (221)
+...+..++..+|++++|+|+++....+....|..... .+.|+++|+||+|+.+.........+....++ .++.
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~ 163 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVL 163 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEE
Confidence 98888889999999999999998765555555543322 37899999999998654322212223333344 4899
Q ss_pred ecccCCCChHHHHHHHHHHH
Q 027607 152 ISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 152 ~s~~~~~gv~~~~~~l~~~l 171 (221)
+||++|.|+.+++++|.+.+
T Consensus 164 iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 164 VSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred EecCCCCCHHHHHHHHHHhC
Confidence 99999999999999998865
No 189
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.83 E-value=4.5e-19 Score=119.78 Aligned_cols=164 Identities=20% Similarity=0.352 Sum_probs=128.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCC--cccCCcceeeeeeEEEec-CcEEEEEEEecCCcccc-cccccccccccc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK--KYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKF-GGLRDGYYIHGQ 87 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~-~~~~~~~~~~~d 87 (221)
+..||+|+|..++|||+++.+++.+.... .+.+|+. +.+...+..+ +-.-.+.++||.|.... ..+..+|+.-+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 56899999999999999999988876643 3334443 2222222222 23457899999997766 667789999999
Q ss_pred EEEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCC--ccccHHHHHHHhhcCCeEEEecccCCCChHHH
Q 027607 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN--RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~ 163 (221)
++++||+..+++||+.+..+...+.... ..+|+++++||.|+.+ .....-+..|+.+..++.+++++.....+-+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 9999999999999998877777776654 4689999999999954 33444566899999999999999999999999
Q ss_pred HHHHHHHHhCCCC
Q 027607 164 FLYLARKLAGDPN 176 (221)
Q Consensus 164 ~~~l~~~l~~~~~ 176 (221)
|..++..+.+-..
T Consensus 167 f~~l~~rl~~pqs 179 (198)
T KOG3883|consen 167 FTYLASRLHQPQS 179 (198)
T ss_pred HHHHHHhccCCcc
Confidence 9999998765443
No 190
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.83 E-value=1.1e-19 Score=154.77 Aligned_cols=157 Identities=19% Similarity=0.219 Sum_probs=108.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCccee--eeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
.+..+|+|+|+.++|||||+++|....+..........+ .+.......+....+.+|||||++.+..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 466899999999999999999988765543222222111 222222333446889999999999999888889999999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHH------Hhhc--CCeEEEecccCCCCh
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF------HRKK--NLQYYEISAKSNYNF 160 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~------~~~~--~~~~~~~s~~~~~gv 160 (221)
+++|+|+++....+....+ ..+. ..+.|+++++||+|+.......-...+ .... .++++++||++|.|+
T Consensus 322 aILVVDA~dGv~~QT~E~I-~~~k--~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GI 398 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAI-NYIQ--AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNI 398 (742)
T ss_pred EEEEEECcCCCChhhHHHH-HHHH--hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCH
Confidence 9999999875433322222 1222 237899999999998753321111111 1112 268999999999999
Q ss_pred HHHHHHHHHH
Q 027607 161 EKPFLYLARK 170 (221)
Q Consensus 161 ~~~~~~l~~~ 170 (221)
.+++.+|...
T Consensus 399 deLle~I~~l 408 (742)
T CHL00189 399 DKLLETILLL 408 (742)
T ss_pred HHHHHhhhhh
Confidence 9999998774
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=2.1e-19 Score=155.11 Aligned_cols=155 Identities=25% Similarity=0.221 Sum_probs=109.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc--------ccccccccc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYY 83 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~--------~~~~~~~~~ 83 (221)
...+|+++|.+|||||||+|+|+.... ..+..++|++...........+..+.+|||||... +......++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~-~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRRE-AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 457899999999999999999875543 44566788888777666555567899999999653 122233457
Q ss_pred ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC-eEEEecccCCCChHH
Q 027607 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEK 162 (221)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~gv~~ 162 (221)
..+|++++|+|+++...... ..|...+.. .+.|+++|+||+|+..... ....+. ..+. ..+++||++|.|+.+
T Consensus 353 ~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~g~GI~e 426 (712)
T PRK09518 353 SLADAVVFVVDGQVGLTSTD-ERIVRMLRR--AGKPVVLAVNKIDDQASEY--DAAEFW-KLGLGEPYPISAMHGRGVGD 426 (712)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHh--cCCCEEEEEECcccccchh--hHHHHH-HcCCCCeEEEECCCCCCchH
Confidence 89999999999986432111 134444433 4899999999999864321 112221 2222 357899999999999
Q ss_pred HHHHHHHHHhC
Q 027607 163 PFLYLARKLAG 173 (221)
Q Consensus 163 ~~~~l~~~l~~ 173 (221)
++.+|.+.+..
T Consensus 427 Ll~~i~~~l~~ 437 (712)
T PRK09518 427 LLDEALDSLKV 437 (712)
T ss_pred HHHHHHHhccc
Confidence 99999987744
No 192
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.82 E-value=3.6e-19 Score=152.80 Aligned_cols=155 Identities=14% Similarity=0.149 Sum_probs=107.6
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
..+...|+|+|+.++|||||+++|..+.+.... ..|.+.......+...+..+.+|||||++.|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e--~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGE--AGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccc--cCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 456689999999999999999998766554322 223333332333333346799999999999999888888999999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc---HHHHH---HHhhc--CCeEEEecccCCCChH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVT---FHRKK--NLQYYEISAKSNYNFE 161 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~---~~~~~--~~~~~~~s~~~~~gv~ 161 (221)
++|+|+++...-+....| .... ..+.|+++++||+|+.+.... .+... +...+ .++++++|+++|.|++
T Consensus 365 ILVVdAddGv~~qT~e~i-~~a~--~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~ 441 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAI-NHAK--AAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGID 441 (787)
T ss_pred EEEEECCCCCCHhHHHHH-HHHH--hcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCch
Confidence 999999875322222222 1111 237999999999999653211 11111 11122 2689999999999999
Q ss_pred HHHHHHHH
Q 027607 162 KPFLYLAR 169 (221)
Q Consensus 162 ~~~~~l~~ 169 (221)
+++++|..
T Consensus 442 eLle~I~~ 449 (787)
T PRK05306 442 ELLEAILL 449 (787)
T ss_pred HHHHhhhh
Confidence 99999875
No 193
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=4.9e-20 Score=123.14 Aligned_cols=157 Identities=22% Similarity=0.350 Sum_probs=123.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
++.+|.++|--|+||||++.++-.+.. ....|++|.....+.+ ++..+++||..|+...+..|+.|+.+.+++|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 789999999999999999998554443 4557788776666555 78899999999999999999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHh--hcCCCCEEEEEeCCCcCCccccHHHHH-----HHhhcCCeEEEecccCCCChHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~gv~~~~ 164 (221)
|+|.+|..........+..+.. ...+..++++.||.|...+....+... ......+.++.+||.+|.|++...
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence 9999998766554443333322 234677788999999887665555432 223345789999999999999999
Q ss_pred HHHHHHHhC
Q 027607 165 LYLARKLAG 173 (221)
Q Consensus 165 ~~l~~~l~~ 173 (221)
+|+.+.+..
T Consensus 172 DWL~~~l~~ 180 (182)
T KOG0072|consen 172 DWLQRPLKS 180 (182)
T ss_pred HHHHHHHhc
Confidence 999997754
No 194
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.82 E-value=3.2e-19 Score=150.35 Aligned_cols=145 Identities=14% Similarity=0.115 Sum_probs=105.6
Q ss_pred cCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc------ccccc--ccccEEEE
Q 027607 20 GDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY--IHGQCAII 91 (221)
Q Consensus 20 G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~------~~~~~--~~~d~~i~ 91 (221)
|++|||||||+|++.+... ...+..|++.+.....+..++..+.+|||||...+... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~--~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ--TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC--eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999876654 34556677776665555445567899999998776553 23333 36899999
Q ss_pred EEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~ 170 (221)
|+|+++.+. ...+...+.. .+.|+++|+||+|+.++ ....+...+....+++++++|+++|.|++++++++.+.
T Consensus 79 VvDat~ler---~l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred EecCCcchh---hHHHHHHHHh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 999987432 1122222222 37999999999998543 23334456677788999999999999999999999886
Q ss_pred H
Q 027607 171 L 171 (221)
Q Consensus 171 l 171 (221)
.
T Consensus 154 ~ 154 (591)
T TIGR00437 154 I 154 (591)
T ss_pred h
Confidence 4
No 195
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.81 E-value=4.9e-19 Score=149.08 Aligned_cols=152 Identities=18% Similarity=0.101 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC---ccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTG---EFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
+.|+++|+.++|||||+++|... .+..... .|.+.......+...+..+.+||+||++.+...+...+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~--rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKK--RGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhc--CCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 47999999999999999997642 2222222 233333222222323378999999999988777777889999999
Q ss_pred EEEECCCh---hhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCcccc----HHHHHHHhhc----CCeEEEecccCCC
Q 027607 91 IMFDVTAR---LTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK----AKQVTFHRKK----NLQYYEISAKSNY 158 (221)
Q Consensus 91 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~----~~~~~~~~~~----~~~~~~~s~~~~~ 158 (221)
+|+|+++. .+++.+ ..+.. .+.| +++|+||+|+.+.... .+...+.... +++++++|+++|.
T Consensus 79 LVVDa~~G~~~qT~ehl----~il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~ 152 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ 152 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence 99999984 333222 22221 2667 9999999998654321 1222333222 5789999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 027607 159 NFEKPFLYLARKLAG 173 (221)
Q Consensus 159 gv~~~~~~l~~~l~~ 173 (221)
|+++++..|...+..
T Consensus 153 GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 153 GIGELKKELKNLLES 167 (581)
T ss_pred CchhHHHHHHHHHHh
Confidence 999999998876543
No 196
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.81 E-value=3.9e-19 Score=145.54 Aligned_cols=155 Identities=20% Similarity=0.164 Sum_probs=105.0
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCcc--CC---------------------------cccCCcceeeeeeEEEecCc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EK---------------------------KYEPTIGVEVHPLDFFTNCG 60 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (221)
+.+.++|+++|++++|||||+++|+.... .. ......|+|.+.....+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 45789999999999999999999884211 10 01114567777777777777
Q ss_pred EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc------
Q 027607 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV------ 134 (221)
Q Consensus 61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------ 134 (221)
+..+.+|||||++.+.......+..+|++++|+|+++..++.....+...+.......|+++++||+|+.+...
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~ 162 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEV 162 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHH
Confidence 88999999999987765545557889999999999874223222222222222223356899999999864211
Q ss_pred cHHHHHHHhhcC-----CeEEEecccCCCChHHHH
Q 027607 135 KAKQVTFHRKKN-----LQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 135 ~~~~~~~~~~~~-----~~~~~~s~~~~~gv~~~~ 164 (221)
..+...+....+ ++++++|+++|.|+.+..
T Consensus 163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 112223333333 579999999999998643
No 197
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=2.6e-19 Score=154.51 Aligned_cols=158 Identities=16% Similarity=0.216 Sum_probs=107.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc----------cccc-c
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------GGLR-D 80 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~----------~~~~-~ 80 (221)
..++|+++|.+|||||||+|+|+.... .......+++.......+...+..+.+|||||..+. ..+. .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~-~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEER-AVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc-cccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 458999999999999999999886653 222345555555544333333446779999996421 1111 2
Q ss_pred cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHH-HHh----hcCCeEEEeccc
Q 027607 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-FHR----KKNLQYYEISAK 155 (221)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~----~~~~~~~~~s~~ 155 (221)
..++.+|++++|+|+++..+.+.... ...+.. .++|+++|+||+|+.+......... ... ....+.+.+||+
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~i-~~~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAk 604 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLKV-MSMAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAK 604 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence 23678999999999999877776543 333332 3799999999999865322221111 111 123467899999
Q ss_pred CCCChHHHHHHHHHHHhC
Q 027607 156 SNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 156 ~~~gv~~~~~~l~~~l~~ 173 (221)
+|.|+++++..+.+.+.+
T Consensus 605 tg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 605 TGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999997654
No 198
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.81 E-value=1.1e-18 Score=131.03 Aligned_cols=180 Identities=16% Similarity=0.173 Sum_probs=126.0
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc----------
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------- 77 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~---------- 77 (221)
..+.+.++|+|+|.||+|||||.|.+++.. ....+....+|+......+..+...+.++||||.-.-..
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~k-v~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~ 145 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQK-VSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSV 145 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCc-cccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHh
Confidence 456788999999999999999999966544 455667777888888888888889999999999422111
Q ss_pred --ccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc--------------ccHHHHHH
Q 027607 78 --LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTF 141 (221)
Q Consensus 78 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--------------~~~~~~~~ 141 (221)
-....+.++|++++++|+++....-.. ..+..+.. +.+.|-++|.||.|..... ......++
T Consensus 146 lq~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~-ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 146 LQNPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEE-YSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred hhCHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHH-HhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 112235679999999999974322221 12222222 3489999999999964321 11101111
Q ss_pred Hh-------------hcCC----eEEEecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCcc
Q 027607 142 HR-------------KKNL----QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV 190 (221)
Q Consensus 142 ~~-------------~~~~----~~~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~ 190 (221)
.. ..++ .+|.+|+++|.|++++.++|..+...+|..+..+-++..+++.
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~ 289 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEF 289 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHH
Confidence 11 1112 4899999999999999999999999999888777777664444
No 199
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.81 E-value=5.5e-19 Score=125.47 Aligned_cols=149 Identities=18% Similarity=0.230 Sum_probs=101.6
Q ss_pred EEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc-EEEEEEEecCCcccccccc-------ccccccccEE
Q 027607 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGGLR-------DGYYIHGQCA 89 (221)
Q Consensus 18 v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~D~~g~~~~~~~~-------~~~~~~~d~~ 89 (221)
++|++|||||||++++....... .....+.+........... ...+.+||+||........ ..++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI-VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc-cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 58999999999999977544331 2233333333333322222 5689999999976654433 3367889999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHH-----HHHHhhcCCeEEEecccCCCChHHHH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-----VTFHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~gv~~~~ 164 (221)
++|+|+.+........ +...... .+.|+++|+||+|+......... .........+++++|+.++.|+.+++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence 9999999876655443 2222222 48999999999998654333222 23334456789999999999999999
Q ss_pred HHHHHH
Q 027607 165 LYLARK 170 (221)
Q Consensus 165 ~~l~~~ 170 (221)
.++.+.
T Consensus 157 ~~l~~~ 162 (163)
T cd00880 157 EALIEA 162 (163)
T ss_pred HHHHhh
Confidence 998874
No 200
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.80 E-value=1.2e-18 Score=142.73 Aligned_cols=155 Identities=19% Similarity=0.158 Sum_probs=105.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhc--CccCCc---------------------------ccCCcceeeeeeEEEecCc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK---------------------------YEPTIGVEVHPLDFFTNCG 60 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 60 (221)
+.+.++|+++|+.++|||||+.+|+. +..... .....|.+.+.....+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 45789999999999999999999885 222110 1113356666666667777
Q ss_pred EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCccc-----
Q 027607 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV----- 134 (221)
Q Consensus 61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----- 134 (221)
...+.+|||||++.+.......+..+|++++|+|+++..++.... .+...+.......|+++|+||+|+.+...
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~ 163 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEA 163 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHH
Confidence 789999999999887655555678999999999999885432211 11112222233467899999999864211
Q ss_pred -cHHHHHHHhhcC-----CeEEEecccCCCChHHHH
Q 027607 135 -KAKQVTFHRKKN-----LQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 135 -~~~~~~~~~~~~-----~~~~~~s~~~~~gv~~~~ 164 (221)
..+...+....+ ++++++|+++|.|+.+.+
T Consensus 164 ~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 164 IKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 122233444333 679999999999998643
No 201
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.80 E-value=1.6e-18 Score=124.47 Aligned_cols=148 Identities=15% Similarity=0.153 Sum_probs=99.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc----------cccccccccc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLRDGYYI 84 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~----------~~~~~~~~~~ 84 (221)
.|+++|++|||||||++.+..+.......++.+.+.......... .+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 389999999999999999887777677777777666554444333 789999999432 2222233333
Q ss_pred ---cccEEEEEEECCChhhh--ccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH----HHHHHH--hhcCCeEEEec
Q 027607 85 ---HGQCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFH--RKKNLQYYEIS 153 (221)
Q Consensus 85 ---~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----~~~~~~--~~~~~~~~~~s 153 (221)
+.+++++++|....... ..+..|+. .. +.|+++|+||+|+....... ...... .....+++++|
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~---~~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLE---EL--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHH---Hc--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 45788899998765322 11223332 22 68999999999985332211 111112 23456789999
Q ss_pred ccCCCChHHHHHHHHHH
Q 027607 154 AKSNYNFEKPFLYLARK 170 (221)
Q Consensus 154 ~~~~~gv~~~~~~l~~~ 170 (221)
++++.|+.+++++|.+.
T Consensus 153 a~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 153 SLKGQGIDELRALIEKW 169 (170)
T ss_pred cCCCCCHHHHHHHHHHh
Confidence 99999999999998874
No 202
>PRK10218 GTP-binding protein; Provisional
Probab=99.80 E-value=2.7e-18 Score=144.40 Aligned_cols=156 Identities=16% Similarity=0.210 Sum_probs=114.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc--CccCCc------------ccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLT--GEFEKK------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~ 78 (221)
-.+|+|+|+.++|||||+++|+. +.+... ...+.|.+.......+.+++..+.+|||||+..+...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 46899999999999999999886 433222 1235677777777778888899999999999999988
Q ss_pred cccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH---HHHHHH-------hhcCCe
Q 027607 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFH-------RKKNLQ 148 (221)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~-------~~~~~~ 148 (221)
+..+++.+|++++|+|+.+....+. ..++..... .+.|.++++||+|+.+..... +..... ....++
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~--~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~P 161 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA--YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFP 161 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH--cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCC
Confidence 8999999999999999987643322 223333322 378999999999986543322 222221 113467
Q ss_pred EEEecccCCC----------ChHHHHHHHHHHH
Q 027607 149 YYEISAKSNY----------NFEKPFLYLARKL 171 (221)
Q Consensus 149 ~~~~s~~~~~----------gv~~~~~~l~~~l 171 (221)
++.+|+.+|. |+..+++.|...+
T Consensus 162 Vi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 162 IVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred EEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 8999999997 5778887777754
No 203
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=4.7e-18 Score=134.78 Aligned_cols=158 Identities=16% Similarity=0.203 Sum_probs=117.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccc-----------
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD----------- 80 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~----------- 80 (221)
..+||+|+|.||+|||||+|+ +.+.......+..|+|++.+...+..+...+.++||+|..+-.....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~-ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINA-ILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHH-hccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 459999999999999999999 55666778889999999999998888888999999999644322221
Q ss_pred cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc-ccHHHH------HHHhhcCCeEEEec
Q 027607 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQV------TFHRKKNLQYYEIS 153 (221)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~------~~~~~~~~~~~~~s 153 (221)
..+..++.+++|+|++.+.+-++.+ ....+.. .+.++++|+||.|+.+.. ...+.. .+......+.+.+|
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iS 332 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLR-IAGLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFIS 332 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEE
Confidence 2256799999999999987655532 2222222 389999999999986541 221111 12222356789999
Q ss_pred ccCCCChHHHHHHHHHHHhC
Q 027607 154 AKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 154 ~~~~~gv~~~~~~l~~~l~~ 173 (221)
|++|.|+.++|+.+......
T Consensus 333 A~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 333 ALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred ecCCCChHHHHHHHHHHHHH
Confidence 99999999999998875543
No 204
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.79 E-value=1.4e-18 Score=129.16 Aligned_cols=146 Identities=19% Similarity=0.195 Sum_probs=95.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCc-----------------------------ccCCcceeeeeeEEEecCcEEEEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKK-----------------------------YEPTIGVEVHPLDFFTNCGKIRFY 65 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~i~ 65 (221)
||+|+|.+|+|||||+++|+.....-. .....|.+.......+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 689999999999999999875322100 001145556655556666677899
Q ss_pred EEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc------cHHHH
Q 027607 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV------KAKQV 139 (221)
Q Consensus 66 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------~~~~~ 139 (221)
+|||||+..+.......+..+|++++|+|+++...-+.. .... +.......++++|+||+|+.+... ..+..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~-~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~ 158 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSY-ILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYL 158 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHH-HHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHH
Confidence 999999887655555667899999999999876322211 1111 222222345788999999864211 11222
Q ss_pred HHHhhcC---CeEEEecccCCCChHH
Q 027607 140 TFHRKKN---LQYYEISAKSNYNFEK 162 (221)
Q Consensus 140 ~~~~~~~---~~~~~~s~~~~~gv~~ 162 (221)
.+....+ .+++++||++|.|+.+
T Consensus 159 ~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 159 AFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 2333334 4589999999999975
No 205
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.79 E-value=3.5e-18 Score=128.84 Aligned_cols=150 Identities=15% Similarity=0.060 Sum_probs=96.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc-------cccccccccc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------LRDGYYIHGQ 87 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~-------~~~~~~~~~d 87 (221)
+|+++|++|||||||+++|.+... ......+++.......+...+..+++||+||...... .....++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~--~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS--EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc--cccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999775432 1222233333333333333557899999999754321 1234578999
Q ss_pred EEEEEEECCChhh-hccHHHH--------------------------------------------HHHH-----------
Q 027607 88 CAIIMFDVTARLT-YKNVPTW--------------------------------------------HRDL----------- 111 (221)
Q Consensus 88 ~~i~v~d~~~~~s-~~~~~~~--------------------------------------------~~~~----------- 111 (221)
++++|+|+++... ...+... +..+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 9999999987542 1111111 1111
Q ss_pred -----------HhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHH
Q 027607 112 -----------CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 112 -----------~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l 171 (221)
.......|+++|+||+|+..... ...++. ...++++|+.+|.|++++|+.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~---~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE---LDLLAR--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCHHH---HHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 11112358999999999854322 222332 34689999999999999999998854
No 206
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.79 E-value=1.8e-18 Score=145.56 Aligned_cols=154 Identities=16% Similarity=0.243 Sum_probs=113.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc--CccCCc------------ccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT--GEFEKK------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~ 80 (221)
+|+|+|+.++|||||+++|+. +.+... .....|.+.......+.++++.+.+|||||+.++...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 799999999999999999886 332221 122346666666667777789999999999999988888
Q ss_pred cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc---cHHHHHHH-------hhcCCeEE
Q 027607 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFH-------RKKNLQYY 150 (221)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~-------~~~~~~~~ 150 (221)
.+++.+|++++|+|+.+.. ......|+...... +.|+++|+||+|+.+... ..+...+. ....++++
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~--~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl 159 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL--GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIV 159 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC--CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEE
Confidence 8999999999999998753 33334555554443 789999999999865332 12222222 12356799
Q ss_pred EecccCCC----------ChHHHHHHHHHHH
Q 027607 151 EISAKSNY----------NFEKPFLYLARKL 171 (221)
Q Consensus 151 ~~s~~~~~----------gv~~~~~~l~~~l 171 (221)
.+|+++|. |+..+|+.|.+.+
T Consensus 160 ~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 160 YASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred echhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 99999985 7999999888865
No 207
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.6e-17 Score=137.43 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=121.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc------cccc--
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------DGYY-- 83 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~------~~~~-- 83 (221)
+..+|+++|+||||||||+|++.+.. ..+.+-+|+|.+.++..+..++.+++++|.||.-...... +.|+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~--q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGAN--QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccC--ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 56789999999999999999965443 4567788999999999998888889999999954433321 2333
Q ss_pred ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC-ccccHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~ 162 (221)
...|+++-|+|+++.+..-.+..-+.++ +.|+++++|++|..+ +....+..++....|+++++++|.+|.|+++
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyltlQLlE~-----g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~ 154 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYLTLQLLEL-----GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEE 154 (653)
T ss_pred CCCCEEEEEcccchHHHHHHHHHHHHHc-----CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHH
Confidence 3569999999999976433322222222 899999999999865 4455667778889999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 027607 163 PFLYLARKLAGDP 175 (221)
Q Consensus 163 ~~~~l~~~l~~~~ 175 (221)
+...+.+....+.
T Consensus 155 l~~~i~~~~~~~~ 167 (653)
T COG0370 155 LKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHhccccc
Confidence 9998888654444
No 208
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.77 E-value=4.4e-18 Score=116.44 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=87.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc----ccccccccccEEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----LRDGYYIHGQCAI 90 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~----~~~~~~~~~d~~i 90 (221)
||+++|+.|||||||+++|..... .+..|..+.+. =.++||||.-..+. .......++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999554332 22233322111 13579999532221 1122245899999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC-ccccHHHHHHHhhcCC-eEEEecccCCCChHHHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~-~~~~~s~~~~~gv~~~~~~l~ 168 (221)
+|.|++++.+.-.- .+...+ ++|+|-|+||+|+.. ........++....|+ ..|.+|+.+|.|++++..+|.
T Consensus 69 ll~dat~~~~~~pP-~fa~~f-----~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 69 LLQDATEPRSVFPP-GFASMF-----NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred EEecCCCCCccCCc-hhhccc-----CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 99999987543221 111111 789999999999983 2223333444455554 479999999999999988763
No 209
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.76 E-value=6.4e-19 Score=135.97 Aligned_cols=152 Identities=15% Similarity=0.179 Sum_probs=97.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCc----ccC------------CcceeeeeeEEEecCcEEEEEEEecCCccccccc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKK----YEP------------TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~ 78 (221)
+|+++|++|||||||+++++....... ... ..+.+.......+...+..+.+|||||...+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 589999999999999999875321100 000 0122223333344445678999999998877667
Q ss_pred cccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeE--EEecccC
Q 027607 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY--YEISAKS 156 (221)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~s~~~ 156 (221)
+...+..+|++++|+|++..........|. .+.. .+.|.++++||+|............+....+.++ +.+...+
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~--~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~ 157 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE--AGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGE 157 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH--cCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccC
Confidence 777889999999999999865443333332 2222 3789999999999876543332333333344443 4455677
Q ss_pred CCChHHHHHHHHH
Q 027607 157 NYNFEKPFLYLAR 169 (221)
Q Consensus 157 ~~gv~~~~~~l~~ 169 (221)
|.++..+.+.+..
T Consensus 158 ~~~~~~~vd~~~~ 170 (268)
T cd04170 158 GDDFKGVVDLLTE 170 (268)
T ss_pred CCceeEEEEcccC
Confidence 7777665544443
No 210
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=2.5e-17 Score=115.26 Aligned_cols=157 Identities=21% Similarity=0.212 Sum_probs=114.4
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCc--------ccC----CcceeeeeeEEEecCcEEEEEEEecCCccccc
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK--------YEP----TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~ 76 (221)
....+.||+|.|+-++||||++++++....... +.. |...++... .+. ....+.+++||||++++
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~--~~~-~~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSI--ELD-EDTGVHLFGTPGQERFK 82 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccce--EEc-CcceEEEecCCCcHHHH
Confidence 456789999999999999999999775442111 011 111111111 111 23678999999999999
Q ss_pred cccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhc--CCeEEEecc
Q 027607 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK--NLQYYEISA 154 (221)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~s~ 154 (221)
.+|.-+.+.+.++++++|.+.+..+ .....+.-+... ...|++|.+||.|+.+....++........ ..+.+..++
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~-~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a 160 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR-NPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDA 160 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc-cCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeeec
Confidence 9999999999999999999999877 323333333332 239999999999999887777666544444 789999999
Q ss_pred cCCCChHHHHHHHHHH
Q 027607 155 KSNYNFEKPFLYLARK 170 (221)
Q Consensus 155 ~~~~gv~~~~~~l~~~ 170 (221)
..+.+..+.+..+...
T Consensus 161 ~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 161 TEGEGARDQLDVLLLK 176 (187)
T ss_pred ccchhHHHHHHHHHhh
Confidence 9999999888776654
No 211
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.76 E-value=2.2e-17 Score=121.13 Aligned_cols=147 Identities=16% Similarity=0.083 Sum_probs=98.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccC--------------CcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~ 77 (221)
+.++|+++|..++|||||+++|+..... .......|.+.......+..++..+.++||||...+..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 3589999999999999999998753110 01112445666666666666777899999999887766
Q ss_pred ccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCccccH-----HHHHHHhhc-----C
Q 027607 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKA-----KQVTFHRKK-----N 146 (221)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~-----~~~~~~~~~-----~ 146 (221)
.....+..+|++++|+|+.....-+. ...+..+... +.| +++++||+|+....... +........ .
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMPQT-REHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 66666788999999999987532221 2222333222 566 77899999985322111 122222222 4
Q ss_pred CeEEEecccCCCChH
Q 027607 147 LQYYEISAKSNYNFE 161 (221)
Q Consensus 147 ~~~~~~s~~~~~gv~ 161 (221)
++++++|+++|.++.
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 679999999999853
No 212
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.76 E-value=1.5e-17 Score=139.53 Aligned_cols=152 Identities=23% Similarity=0.261 Sum_probs=99.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCc----ccCCcceeeeeeEEEe------------cCcEEEEEEEecCCcccc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFFT------------NCGKIRFYCWDTAGQEKF 75 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~----~~~~~~~~~~~~~~~~------------~~~~~~i~~~D~~g~~~~ 75 (221)
+...|+++|++++|||||+++|....+... +..+.|.+........ ......+.+|||||++.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 345799999999999999999887655322 1222332222111100 000113889999999999
Q ss_pred ccccccccccccEEEEEEECCCh---hhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc--------------c---
Q 027607 76 GGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------K--- 135 (221)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------------~--- 135 (221)
..++..+++.+|++++|+|+++. .+++.+. .+.. .+.|+++++||+|+..... .
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 98888899999999999999874 3333222 2222 3789999999999853100 0
Q ss_pred -HHH--------HHHH--------------hhcCCeEEEecccCCCChHHHHHHHHH
Q 027607 136 -AKQ--------VTFH--------------RKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 136 -~~~--------~~~~--------------~~~~~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
... ..+. .....+++++||++|.|+.++..+|..
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 000 0001 011367999999999999999988865
No 213
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.76 E-value=1.6e-17 Score=135.03 Aligned_cols=159 Identities=17% Similarity=0.157 Sum_probs=101.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccC--Ccceeeeee--------------------EEEecC------cEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--TIGVEVHPL--------------------DFFTNC------GKI 62 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~--~~~~~~~~~--------------------~~~~~~------~~~ 62 (221)
.+.++|+++|..++|||||+++|. +.+...... ..|.+.... ....+. ...
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt-~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALT-GVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHh-CeecccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 367999999999999999999864 332211111 111111100 000011 146
Q ss_pred EEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc----HHH
Q 027607 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQ 138 (221)
Q Consensus 63 ~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~ 138 (221)
.+.+||+||++.+...+......+|++++|+|+++..........+..+ ......|+++++||+|+.+.... .+.
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGIKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcCCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 7999999999988777666777889999999999753112222222222 22234578999999998753221 111
Q ss_pred HHHHhh---cCCeEEEecccCCCChHHHHHHHHHHH
Q 027607 139 VTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 139 ~~~~~~---~~~~~~~~s~~~~~gv~~~~~~l~~~l 171 (221)
..+... .+++++++|+++|.|+++++++|...+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 222222 257899999999999999999998754
No 214
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.75 E-value=6.9e-18 Score=126.44 Aligned_cols=146 Identities=19% Similarity=0.134 Sum_probs=95.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcc--C---------------------------CcccCCcceeeeeeEEEecCcEEEEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEF--E---------------------------KKYEPTIGVEVHPLDFFTNCGKIRFY 65 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~i~ 65 (221)
+|+++|+.++|||||+.+|+.... . .......|++.+.....+..++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999864211 0 01112345666666666767788999
Q ss_pred EEecCCccccccccccccccccEEEEEEECCChhh---h---ccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc---c-c
Q 027607 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---Y---KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---V-K 135 (221)
Q Consensus 66 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~-~ 135 (221)
+|||||+..+.......+..+|++++|+|+++... + .......... ......|+++++||+|+.... . .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiivvNK~Dl~~~~~~~~~~ 159 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGVKQLIVAVNKMDDVTVNWSEERY 159 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcCCCeEEEEEEccccccccccHHHH
Confidence 99999987766555556778999999999998521 1 1111112222 222347899999999987321 1 1
Q ss_pred HH----HHHHHhhc-----CCeEEEecccCCCChH
Q 027607 136 AK----QVTFHRKK-----NLQYYEISAKSNYNFE 161 (221)
Q Consensus 136 ~~----~~~~~~~~-----~~~~~~~s~~~~~gv~ 161 (221)
.+ ........ .++++++||++|.|+.
T Consensus 160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 11 11122222 3679999999999987
No 215
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.75 E-value=1.4e-17 Score=125.81 Aligned_cols=117 Identities=19% Similarity=0.173 Sum_probs=85.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCC----------------cccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEK----------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~ 78 (221)
+|+++|+.|+|||||+++++...... ......+.+.......+.+++..+.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 58999999999999999987632110 00112334444555566667789999999999988888
Q ss_pred cccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc
Q 027607 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (221)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 134 (221)
+..+++.+|++++|+|+++..... ...++..+.. .+.|+++++||+|+.+...
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~--~~~P~iivvNK~D~~~a~~ 133 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK--LNIPTIIFVNKIDRAGADL 133 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH--cCCCEEEEEECccccCCCH
Confidence 888899999999999999865432 2334444433 3789999999999876443
No 216
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.74 E-value=1.3e-19 Score=126.29 Aligned_cols=164 Identities=33% Similarity=0.527 Sum_probs=136.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcE-EEEEEEecCCccccccccccccccccEEEE
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
.+++.|+|..|+|||+++++++...+...|..++|.++......-+... +++++||+.|++++..+...|++.+.+.++
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i 104 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI 104 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence 4799999999999999999999988888888899887776655544443 588999999999999999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCcCCccccH---HHHHHHhhcCC-eEEEecccCCCChHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNL-QYYEISAKSNYNFEK 162 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~-~~~~~s~~~~~gv~~ 162 (221)
|||++....|+....|.+.+.... .-.|+++..||+|........ ...++++++++ ..+++|++.+.++.+
T Consensus 105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~E 184 (229)
T KOG4423|consen 105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPE 184 (229)
T ss_pred EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhH
Confidence 999999999999999999886542 246778889999987643333 34467777776 489999999999999
Q ss_pred HHHHHHHHHhCCCC
Q 027607 163 PFLYLARKLAGDPN 176 (221)
Q Consensus 163 ~~~~l~~~l~~~~~ 176 (221)
+...++..+..+..
T Consensus 185 a~r~lVe~~lvnd~ 198 (229)
T KOG4423|consen 185 AQRELVEKILVNDE 198 (229)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999998876653
No 217
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=1.1e-16 Score=114.51 Aligned_cols=155 Identities=14% Similarity=0.110 Sum_probs=111.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCc----------ccccccccc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ----------EKFGGLRDG 81 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~----------~~~~~~~~~ 81 (221)
.-.-|+++|.+|||||||+|+|++.......+.++|.|.....+.+++. +.+.|.||- +.+..+...
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 5568999999999999999998887766788899999999988887765 788999992 233334444
Q ss_pred ccc---cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH-HHHhhc----CCe--EEE
Q 027607 82 YYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKK----NLQ--YYE 151 (221)
Q Consensus 82 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~----~~~--~~~ 151 (221)
|+. +..++++++|+.......+. .+++.+... +.|+++++||+|........+.. ..+... ... ++.
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~--~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~ 176 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL--GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVL 176 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc--CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEE
Confidence 543 35688899999876543332 333333333 89999999999986644333222 222111 122 778
Q ss_pred ecccCCCChHHHHHHHHHHHh
Q 027607 152 ISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 152 ~s~~~~~gv~~~~~~l~~~l~ 172 (221)
.|+..+.|++++...|.+.+.
T Consensus 177 ~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 177 FSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred EecccccCHHHHHHHHHHHhh
Confidence 889999999999998888654
No 218
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.74 E-value=4.4e-17 Score=132.36 Aligned_cols=159 Identities=17% Similarity=0.137 Sum_probs=99.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCccc--CCcceeeeeeE----E--------------E--ec------CcE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE--PTIGVEVHPLD----F--------------F--TN------CGK 61 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~--~~~~~~~~~~~----~--------------~--~~------~~~ 61 (221)
..+.++|+++|+.++|||||+.+|. +.+..... ...|.+..... . . .. ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~-~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALT-GVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhh-CeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 4578999999999999999999863 33221111 11222222110 0 0 00 013
Q ss_pred EEEEEEecCCccccccccccccccccEEEEEEECCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH----
Q 027607 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---- 136 (221)
Q Consensus 62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---- 136 (221)
..+.+|||||++.+..........+|++++|+|++++. ..+... .+..+ ......|+++|+||+|+.+.....
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~~l-~~~~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLMAL-DIIGIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHHHH-HHcCCCcEEEEEEeeccccchhHHHHHH
Confidence 57899999998877654444456679999999999653 112111 11222 222235789999999986532211
Q ss_pred HHHHHHhh---cCCeEEEecccCCCChHHHHHHHHHHH
Q 027607 137 KQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 137 ~~~~~~~~---~~~~~~~~s~~~~~gv~~~~~~l~~~l 171 (221)
+...+... .+.+++++|+++|.|++++++.|...+
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 12222221 257899999999999999999998865
No 219
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.74 E-value=2.1e-17 Score=133.65 Aligned_cols=191 Identities=15% Similarity=0.194 Sum_probs=135.4
Q ss_pred CcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccc
Q 027607 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~ 86 (221)
.....+.+||+++|+.|+|||||+-+++...+.+.+.+.... -.+...+....+...+.|++..+..+.....-++.+
T Consensus 3 ~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~--i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA 80 (625)
T KOG1707|consen 3 DDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR--ILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKA 80 (625)
T ss_pred CccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCc--cccCCccCcCcCceEEEecccccchhHHHHHHHhhc
Confidence 345678899999999999999999999998887655543321 111233344456689999987766666667778999
Q ss_pred cEEEEEEECCChhhhccHH-HHHHHHHhhc---CCCCEEEEEeCCCcCCcccc-HHH----HHHHhhcCCeEEEecccCC
Q 027607 87 QCAIIMFDVTARLTYKNVP-TWHRDLCRVC---ENIPIVLCGNKVDVKNRQVK-AKQ----VTFHRKKNLQYYEISAKSN 157 (221)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~-~~~----~~~~~~~~~~~~~~s~~~~ 157 (221)
+++.++|+++++.+.+.+. .|+..+++.. -+.|+|+|+||+|....... .+. +......--..++|||++.
T Consensus 81 ~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~ 160 (625)
T KOG1707|consen 81 DVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTL 160 (625)
T ss_pred CEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhh
Confidence 9999999999999988865 7888887765 58999999999998653332 111 1111111224688999999
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHH
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELA 205 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~ 205 (221)
.++.++|...-+++..... |...+..+.+.+.........++
T Consensus 161 ~n~~e~fYyaqKaVihPt~------PLyda~~qelkp~~v~al~RIFk 202 (625)
T KOG1707|consen 161 ANVSELFYYAQKAVIHPTS------PLYDAEEQELKPRCVKALKRIFK 202 (625)
T ss_pred hhhHhhhhhhhheeeccCc------cccccccccccHHHHHHHHHHHh
Confidence 9999999777776655443 44444555566666555544443
No 220
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.73 E-value=5.6e-17 Score=124.48 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=82.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccC-Cc---c----------------cCCcceeeeeeEEEecCcEEEEEEEecCCcc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFE-KK---Y----------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~-~~---~----------------~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~ 73 (221)
-+|+++|++|+|||||+++|+..... .. . ....+.+.......+.+++..+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 57999999999999999998752111 00 0 0012334444455667778899999999998
Q ss_pred ccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc
Q 027607 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (221)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 134 (221)
++.......++.+|++++|+|+++..... ...++..... .++|+++++||+|+.+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~--~~~P~iivvNK~D~~~a~~ 140 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL--RGIPIITFINKLDREGRDP 140 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh--cCCCEEEEEECCccCCCCH
Confidence 87776677788999999999998753322 2223333222 3789999999999876543
No 221
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.73 E-value=7e-18 Score=129.59 Aligned_cols=115 Identities=23% Similarity=0.184 Sum_probs=82.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcc--CC--------------cccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEF--EK--------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~ 78 (221)
+|+++|++|+|||||+++|+.... .. ......|.+.......+.+++..+.+|||||...+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999874211 00 01123455666556666667789999999998888777
Q ss_pred cccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc
Q 027607 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (221)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 132 (221)
+...++.+|++++|+|+.+...-+. ...+..... .++|+++++||+|+.+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~--~~~p~ivviNK~D~~~a 131 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR--YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECCCCCCC
Confidence 7888999999999999987542222 222333322 37899999999998753
No 222
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.72 E-value=1.4e-16 Score=134.12 Aligned_cols=153 Identities=24% Similarity=0.274 Sum_probs=97.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcc----cCCcceeeeeeEEEe--cCcE-----E-----EEEEEecCCccc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIGVEVHPLDFFT--NCGK-----I-----RFYCWDTAGQEK 74 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~-----~-----~i~~~D~~g~~~ 74 (221)
.+...|+++|+.|+|||||+++|.+....... ..+.|.+........ .+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 35578999999999999999997543322111 112332222111100 0000 1 268999999999
Q ss_pred cccccccccccccEEEEEEECCC---hhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc-----------------
Q 027607 75 FGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----------------- 134 (221)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------------- 134 (221)
+..++...+..+|++++|+|+++ +.++..+. .+.. .+.|+++++||+|+...-.
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 98888888889999999999997 33433332 2222 3789999999999842100
Q ss_pred cHH--------HHHHHhh---------------cCCeEEEecccCCCChHHHHHHHHH
Q 027607 135 KAK--------QVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 135 ~~~--------~~~~~~~---------------~~~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
..+ ....... ..++++++|+.+|.|+.+++..+..
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 000 0001111 2357899999999999998888764
No 223
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.72 E-value=2.3e-16 Score=133.48 Aligned_cols=154 Identities=13% Similarity=0.046 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcc--cCCcceeeeeeEEEec-CcEEEEEEEecCCccccccccccccccccEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKY--EPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
+-|+++|+.++|||||+++|.+- ..... ....|.|.......+. .++..+.+|||||++.+.......+..+|+++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~-~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGV-NADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 36899999999999999996632 11111 1123444433222221 12346899999999888666666688999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCcccc----HHHHHHHhhc---CCeEEEecccCCCChHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK----AKQVTFHRKK---NLQYYEISAKSNYNFEK 162 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~----~~~~~~~~~~---~~~~~~~s~~~~~gv~~ 162 (221)
+|+|+++...-+. ...+..+ ... +.| +++|+||+|+.+.... .+...+.... ..+++++|+++|.|+++
T Consensus 80 LVVda~eg~~~qT-~ehl~il-~~l-gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 80 LVVACDDGVMAQT-REHLAIL-QLT-GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEEECCCCCcHHH-HHHHHHH-HHc-CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 9999987432111 1112212 222 455 5799999998653221 1222333332 36799999999999999
Q ss_pred HHHHHHHHH
Q 027607 163 PFLYLARKL 171 (221)
Q Consensus 163 ~~~~l~~~l 171 (221)
+++.|....
T Consensus 157 L~~~L~~~~ 165 (614)
T PRK10512 157 LREHLLQLP 165 (614)
T ss_pred HHHHHHHhh
Confidence 999998754
No 224
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.72 E-value=1.4e-16 Score=117.42 Aligned_cols=158 Identities=16% Similarity=0.213 Sum_probs=94.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcce---eeeeeEEEecCcEEEEEEEecCCccccccccccc-----cc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV---EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-----YI 84 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~-----~~ 84 (221)
+++|+++|.+|+|||||+|++++...........+. +.....+.. .....+.+|||||..........| +.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 479999999999999999998764433222222221 111111111 112368999999975432222222 56
Q ss_pred cccEEEEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCccc---------cHH----HHHHH----hh--
Q 027607 85 HGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV---------KAK----QVTFH----RK-- 144 (221)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---------~~~----~~~~~----~~-- 144 (221)
.+|+++++.+. ++.... .|+..+... +.|+++|+||+|+..... ..+ ..+.+ ..
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 78888887432 233332 445555443 689999999999732111 011 11111 11
Q ss_pred -cCCeEEEeccc--CCCChHHHHHHHHHHHhCCCCC
Q 027607 145 -KNLQYYEISAK--SNYNFEKPFLYLARKLAGDPNL 177 (221)
Q Consensus 145 -~~~~~~~~s~~--~~~gv~~~~~~l~~~l~~~~~~ 177 (221)
...+++.+|+. .+.++..+.+.+...+....+.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 12368889998 5789999999999987665543
No 225
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.72 E-value=1.5e-16 Score=119.07 Aligned_cols=152 Identities=14% Similarity=0.172 Sum_probs=94.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccC-----------------------CcceeeeeeE-------------EEec
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-----------------------TIGVEVHPLD-------------FFTN 58 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~-----------------------~~~~~~~~~~-------------~~~~ 58 (221)
||+++|+.++|||||+++|..+.+...... ..|.+..... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999887555321100 0111110000 0112
Q ss_pred CcEEEEEEEecCCcccccccccccc--ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH
Q 027607 59 CGKIRFYCWDTAGQEKFGGLRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA 136 (221)
Q Consensus 59 ~~~~~i~~~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 136 (221)
..+..+.++||||++.+.......+ ..+|++++|+|+.....-. ...++..+.. .++|+++|+||+|+.++....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~--~~ip~ivvvNK~D~~~~~~~~ 157 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALA--LNIPVFVVVTKIDLAPANILQ 157 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHH--cCCCEEEEEECccccCHHHHH
Confidence 2346789999999987754433333 3689999999998754322 2223333333 278999999999985433222
Q ss_pred HHH----HHHh--------------------------hcCCeEEEecccCCCChHHHHHHHHH
Q 027607 137 KQV----TFHR--------------------------KKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 137 ~~~----~~~~--------------------------~~~~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
+.. .... ....+++.+|+.+|.|++++...|..
T Consensus 158 ~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 158 ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 211 1111 11347899999999999998877654
No 226
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=1.9e-16 Score=120.54 Aligned_cols=159 Identities=16% Similarity=0.155 Sum_probs=110.3
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcc-----cccccc----
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-----KFGGLR---- 79 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~-----~~~~~~---- 79 (221)
.+....+|+|.|.||||||||++++.+.. +...+.+-+|-....+.+..+..+++++||||.- +.+.+-
T Consensus 164 Idp~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi 241 (346)
T COG1084 164 IDPDLPTIVVAGYPNVGKSSLVRKLTTAK--PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAI 241 (346)
T ss_pred CCCCCCeEEEecCCCCcHHHHHHHHhcCC--CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHH
Confidence 56678899999999999999999966443 3445566555566666777777899999999941 111111
Q ss_pred ccccccccEEEEEEECCChh--hhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhc-CCeEEEecccC
Q 027607 80 DGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-NLQYYEISAKS 156 (221)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~s~~~ 156 (221)
...-.-.++++|++|.+... +.+....++..+..... .|+++|+||+|..+.....+........ +.....+++..
T Consensus 242 ~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 320 (346)
T COG1084 242 LALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATK 320 (346)
T ss_pred HHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhHHHHHHHHHHhhccccccceeeee
Confidence 11122368899999998654 44555566666666554 8999999999988655544444333333 34477788888
Q ss_pred CCChHHHHHHHHHH
Q 027607 157 NYNFEKPFLYLARK 170 (221)
Q Consensus 157 ~~gv~~~~~~l~~~ 170 (221)
+.+++.+...+...
T Consensus 321 ~~~~d~~~~~v~~~ 334 (346)
T COG1084 321 GCGLDKLREEVRKT 334 (346)
T ss_pred hhhHHHHHHHHHHH
Confidence 88988877777665
No 227
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.71 E-value=2.1e-16 Score=119.51 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=106.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEE-EEEEEecCCcccc----ccccccc---cccc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI-RFYCWDTAGQEKF----GGLRDGY---YIHG 86 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~D~~g~~~~----~~~~~~~---~~~~ 86 (221)
.|+++|.||+|||||++++...+ +.+.+..-+|..+....+..... .+.+-|+||.-+- +.+-..| +..+
T Consensus 198 dvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccC--CcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 57899999999999999966544 35566666777776665544443 4899999996433 3333344 4568
Q ss_pred cEEEEEEECCCh---hhhccHHHHHHHHHhh---cCCCCEEEEEeCCCcCCccccHHHHHHHhhcC-CeEEEecccCCCC
Q 027607 87 QCAIIMFDVTAR---LTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-LQYYEISAKSNYN 159 (221)
Q Consensus 87 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~g 159 (221)
+.+++|+|++.. ..++.+..+..++..+ ..++|.++|+||+|+++.+... ..++..... -.++++||++++|
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~-l~~L~~~lq~~~V~pvsA~~~eg 354 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL-LSSLAKRLQNPHVVPVSAKSGEG 354 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH-HHHHHHHcCCCcEEEeeeccccc
Confidence 999999999988 6666666555555444 4689999999999986322221 123333333 3589999999999
Q ss_pred hHHHHHHHHH
Q 027607 160 FEKPFLYLAR 169 (221)
Q Consensus 160 v~~~~~~l~~ 169 (221)
+..+...|.+
T Consensus 355 l~~ll~~lr~ 364 (366)
T KOG1489|consen 355 LEELLNGLRE 364 (366)
T ss_pred hHHHHHHHhh
Confidence 9998877654
No 228
>PRK12736 elongation factor Tu; Reviewed
Probab=99.71 E-value=2.6e-16 Score=127.44 Aligned_cols=159 Identities=14% Similarity=0.070 Sum_probs=104.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccC--------------CcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~ 75 (221)
..+.++|+++|+.++|||||+++|+..... .......|.+.......+..+...+.++||||++++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 667899999999999999999998742110 011124466666666666666678899999998877
Q ss_pred ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCccccH-----HHHHHHhhc----
Q 027607 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKA-----KQVTFHRKK---- 145 (221)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~-----~~~~~~~~~---- 145 (221)
.......+..+|++++|+|++....-+. ...+..+.. .++| +++++||+|+.+..... +...+....
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~--~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 165 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ--VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPG 165 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH--cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCc
Confidence 6555555678899999999987532222 222222222 2677 67889999986422111 222222222
Q ss_pred -CCeEEEecccCCC--------ChHHHHHHHHHHH
Q 027607 146 -NLQYYEISAKSNY--------NFEKPFLYLARKL 171 (221)
Q Consensus 146 -~~~~~~~s~~~~~--------gv~~~~~~l~~~l 171 (221)
..+++++|+++|. ++..+++.|.+.+
T Consensus 166 ~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 166 DDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred CCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 2579999999983 4566666666543
No 229
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.71 E-value=4.5e-16 Score=116.08 Aligned_cols=160 Identities=14% Similarity=0.177 Sum_probs=103.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEe-cCcEEEEEEEecCCccccc-----cccccccccccE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFG-----GLRDGYYIHGQC 88 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~D~~g~~~~~-----~~~~~~~~~~d~ 88 (221)
||+++|+.||||||+.+.+..+.. +.-....+.|.......+ ..+.+.+.+||+||+..+. ......++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~-p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYS-PRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCC-chhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999998655443 322334444444434333 2456799999999986543 234667899999
Q ss_pred EEEEEECCChhhhc---cHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHH--------HHHHHhhcC---CeEEEecc
Q 027607 89 AIIMFDVTARLTYK---NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK--------QVTFHRKKN---LQYYEISA 154 (221)
Q Consensus 89 ~i~v~d~~~~~s~~---~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--------~~~~~~~~~---~~~~~~s~ 154 (221)
+|+|+|+....-.+ .+...+..+...+++..+.++++|+|+.......+ ........+ +.++.+|.
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 99999998544333 33445555666778999999999999854332222 223333444 78899998
Q ss_pred cCCCChHHHHHHHHHHHhCCCC
Q 027607 155 KSNYNFEKPFLYLARKLAGDPN 176 (221)
Q Consensus 155 ~~~~gv~~~~~~l~~~l~~~~~ 176 (221)
.+ ..+-++|..|.+.+.++..
T Consensus 160 ~D-~Sly~A~S~Ivq~LiP~~~ 180 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLIPNLS 180 (232)
T ss_dssp TS-THHHHHHHHHHHTTSTTHC
T ss_pred cC-cHHHHHHHHHHHHHcccHH
Confidence 87 6899999999998876544
No 230
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.70 E-value=1.8e-16 Score=118.38 Aligned_cols=113 Identities=22% Similarity=0.274 Sum_probs=79.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCc-----------c------cCCcceeeeeeEEEe-----cCcEEEEEEEecCCc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKK-----------Y------EPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQ 72 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~-----------~------~~~~~~~~~~~~~~~-----~~~~~~i~~~D~~g~ 72 (221)
+|+++|+.|+|||||+++|+....... + ....|.+.......+ .+..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999886443211 0 011223332222222 345688999999999
Q ss_pred cccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcC
Q 027607 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (221)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 130 (221)
..+......++..+|++++|+|+++..+... ..++..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~--~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL--EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECcccC
Confidence 9887777888899999999999987765432 233333322 368999999999974
No 231
>PRK12735 elongation factor Tu; Reviewed
Probab=99.70 E-value=3.8e-16 Score=126.61 Aligned_cols=159 Identities=12% Similarity=0.027 Sum_probs=103.0
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCcc--------------CCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~ 74 (221)
.+.+.++|+++|..++|||||+++|+.... ........|.+.......+..+...+.++||||+..
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 356789999999999999999999875200 001112445666655555666667889999999987
Q ss_pred cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEE-EEEeCCCcCCcccc-----HHHHHHHhhc---
Q 027607 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVK-----AKQVTFHRKK--- 145 (221)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~-----~~~~~~~~~~--- 145 (221)
+.......+..+|++++|+|+......+ ....+..+.. .++|.+ +++||+|+.+.... .+...+....
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH--cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 7655556677899999999998753222 1222222222 367865 57999998642211 1222223222
Q ss_pred --CCeEEEecccCCC----------ChHHHHHHHHHH
Q 027607 146 --NLQYYEISAKSNY----------NFEKPFLYLARK 170 (221)
Q Consensus 146 --~~~~~~~s~~~~~----------gv~~~~~~l~~~ 170 (221)
.++++++|+++|. ++..+++.|...
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 3678999999984 556666666553
No 232
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.70 E-value=3e-16 Score=127.23 Aligned_cols=147 Identities=14% Similarity=0.051 Sum_probs=96.6
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCcc--------------CCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~ 74 (221)
.+.+.++|+++|+.++|||||+++|+.... ........|.|.......+..++..+.+|||||+++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 367889999999999999999999863200 001112356666666666766777899999999987
Q ss_pred cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEE-EEEeCCCcCCcccc-----HHHHHHHhhcC--
Q 027607 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVK-----AKQVTFHRKKN-- 146 (221)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~-----~~~~~~~~~~~-- 146 (221)
+..........+|++++|+|+......+.. ..+..+.. .+.|.+ +++||+|+.+.... .+...+....+
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~ 164 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHH--cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 765444456678999999999875322221 22222222 266765 68999998643211 12223333332
Q ss_pred ---CeEEEecccCCC
Q 027607 147 ---LQYYEISAKSNY 158 (221)
Q Consensus 147 ---~~~~~~s~~~~~ 158 (221)
++++++|+.+|.
T Consensus 165 ~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 165 GDDTPIIRGSALKAL 179 (394)
T ss_pred ccCccEEECcccccc
Confidence 689999999875
No 233
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=6.2e-17 Score=110.97 Aligned_cols=154 Identities=18% Similarity=0.281 Sum_probs=116.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
+.=|++++|-.|+|||||++++- +.-.....||.-.+.....+ ++..++.+|.+|+...+..|..|+..++++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLK-dDrl~qhvPTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLK-DDRLGQHVPTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHc-cccccccCCCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 45689999999999999999844 44444555555545444444 67899999999999889999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHH------HHHhhcC-----------CeEEEe
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKN-----------LQYYEI 152 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~------~~~~~~~-----------~~~~~~ 152 (221)
++|+-+.+.|...+..+..+... ....|+++.+||+|.+.....++.. .++...+ ...+.|
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmc 173 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMC 173 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEE
Confidence 99999999998888776665443 3689999999999997755332211 2222211 346778
Q ss_pred cccCCCChHHHHHHHHHH
Q 027607 153 SAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 153 s~~~~~gv~~~~~~l~~~ 170 (221)
|...+.|..+.|.|+...
T Consensus 174 si~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 174 SIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEccCccceeeeehhhh
Confidence 988888888888777654
No 234
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.68 E-value=1.3e-15 Score=117.50 Aligned_cols=140 Identities=17% Similarity=0.268 Sum_probs=86.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCc----------ccCCcceeeeeeEEEecCcEEEEEEEecCCccccc-----
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG----- 76 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~----- 76 (221)
-.++|+|+|.+|+|||||+|+++....... ...+.+..........++..+.+.+|||||.....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 358999999999999999999887766432 23333344444445555666889999999943221
Q ss_pred ---------------------cccccccc--cccEEEEEEECCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCcCCc
Q 027607 77 ---------------------GLRDGYYI--HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (221)
Q Consensus 77 ---------------------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 132 (221)
..+...+. .+++++++++.+.. .+... ...+..+. ..+|+++|+||+|+...
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~ 158 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCcCCH
Confidence 11113333 35677777776542 12221 12233332 37899999999998542
Q ss_pred c----ccHHHHHHHhhcCCeEEEeccc
Q 027607 133 Q----VKAKQVTFHRKKNLQYYEISAK 155 (221)
Q Consensus 133 ~----~~~~~~~~~~~~~~~~~~~s~~ 155 (221)
. ......+.....+++++.....
T Consensus 159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 159 EELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred HHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 2 2223345666778888876653
No 235
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=9.2e-16 Score=122.21 Aligned_cols=161 Identities=16% Similarity=0.175 Sum_probs=111.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc-ccccc--------ccc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLR--------DGY 82 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~-~~~~~--------~~~ 82 (221)
..++|+++|+||+|||||+|+ +.+.....+.+..|+|++.+...++-.++.+.+.||+|..+ ..... ..-
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNa-L~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNA-LSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHH-HhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 458999999999999999998 55666688899999999999999998899999999999655 11111 223
Q ss_pred cccccEEEEEEECCChhhhcc--HHHHHHHHHhhc-------CCCCEEEEEeCCCcCCcc--ccHHHHHHHh---hcCCe
Q 027607 83 YIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVC-------ENIPIVLCGNKVDVKNRQ--VKAKQVTFHR---KKNLQ 148 (221)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~-------~~~p~ivv~nK~D~~~~~--~~~~~~~~~~---~~~~~ 148 (221)
+..+|++++|+|+.....-+. +...+.....-. .+.+++++.||.|+.... .......+.. ....+
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~ 425 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFP 425 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccc
Confidence 668999999999944322222 222222221111 247899999999986431 1111111111 11233
Q ss_pred -EEEecccCCCChHHHHHHHHHHHhC
Q 027607 149 -YYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 149 -~~~~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
..++|+++++|+..+...|...+..
T Consensus 426 i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 426 IVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred eEEEeeechhhhHHHHHHHHHHHHHH
Confidence 4559999999999999998887654
No 236
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.67 E-value=2.2e-15 Score=111.06 Aligned_cols=163 Identities=12% Similarity=-0.006 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc-----------cccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------RDGY 82 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~-----------~~~~ 82 (221)
++|+++|.+|||||||+|++++...........+.|...........+..+.++||||....... ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 58999999999999999998866543222222334443333333335568999999996543211 0112
Q ss_pred cccccEEEEEEECCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCccc--------cHHHHHHHhhcCCeEEE
Q 027607 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQV--------KAKQVTFHRKKNLQYYE 151 (221)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~~~ 151 (221)
....+++++|+++.. .+-. ....+..+.... .-.++++|+|+.|...... ...........+-.++.
T Consensus 81 ~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 356899999999876 2221 122333333322 2368899999999644321 11222233333334433
Q ss_pred ec-----ccCCCChHHHHHHHHHHHhCCCCCc
Q 027607 152 IS-----AKSNYNFEKPFLYLARKLAGDPNLH 178 (221)
Q Consensus 152 ~s-----~~~~~gv~~~~~~l~~~l~~~~~~~ 178 (221)
.+ +..+.++.++++.|.+.+..+....
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~ 190 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKENGGKP 190 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHhcCCCC
Confidence 33 4567899999999999888744433
No 237
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.67 E-value=1.5e-15 Score=118.79 Aligned_cols=165 Identities=18% Similarity=0.313 Sum_probs=100.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCccC------CcccCCcceeeeeeEE---------------EecC-cEEEEEEEecCCc-
Q 027607 16 LVIVGDGGTGKTTFVKRHLTGEFE------KKYEPTIGVEVHPLDF---------------FTNC-GKIRFYCWDTAGQ- 72 (221)
Q Consensus 16 i~v~G~~gsGKStL~~~l~~~~~~------~~~~~~~~~~~~~~~~---------------~~~~-~~~~i~~~D~~g~- 72 (221)
|+++|.+|||||||+|++...... ..+.++.|.......+ ..++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 689999999999999998766532 1122333322221100 0111 3468999999997
Q ss_pred ---cccccccccc---cccccEEEEEEECCCh---------------h-hhc----cHHHH-------------------
Q 027607 73 ---EKFGGLRDGY---YIHGQCAIIMFDVTAR---------------L-TYK----NVPTW------------------- 107 (221)
Q Consensus 73 ---~~~~~~~~~~---~~~~d~~i~v~d~~~~---------------~-s~~----~~~~~------------------- 107 (221)
+...++...+ ++++|++++|+|++.. . .++ .+..|
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444444 8899999999999731 0 010 01111
Q ss_pred -------HH-HHH--------------h----------------------hcCCCCEEEEEeCCCcCCccccHHHHHHHh
Q 027607 108 -------HR-DLC--------------R----------------------VCENIPIVLCGNKVDVKNRQVKAKQVTFHR 143 (221)
Q Consensus 108 -------~~-~~~--------------~----------------------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 143 (221)
.. .+. . ....+|+++|+||.|+.......+... ..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~~l~-~~ 239 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNISKLR-LK 239 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHHHHH-hh
Confidence 00 000 0 012469999999999753322112111 22
Q ss_pred hcCCeEEEecccCCCChHHHHH-HHHHHHhCCCCCcccc
Q 027607 144 KKNLQYYEISAKSNYNFEKPFL-YLARKLAGDPNLHFVE 181 (221)
Q Consensus 144 ~~~~~~~~~s~~~~~gv~~~~~-~l~~~l~~~~~~~~~~ 181 (221)
.....++.+||+.+.++.++.+ .+.+.+...+.+....
T Consensus 240 ~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~~ 278 (318)
T cd01899 240 YPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEITD 278 (318)
T ss_pred CCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceecc
Confidence 2356799999999999999997 6999888887666544
No 238
>CHL00071 tufA elongation factor Tu
Probab=99.66 E-value=2.5e-15 Score=122.33 Aligned_cols=147 Identities=14% Similarity=0.058 Sum_probs=97.6
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccC--------------CcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~ 75 (221)
+.+.++|+++|.+++|||||+++|+..... .......|.+.......+..+...+.++||||+..+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 567899999999999999999998853110 011122566666666666666778899999998776
Q ss_pred ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCccccH-----HHHHHHhhc----
Q 027607 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKA-----KQVTFHRKK---- 145 (221)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~-----~~~~~~~~~---- 145 (221)
.......+..+|++++|+|+.....-+. ...+..+.. .+.| +++++||+|+.+..... +...+....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~--~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~ 165 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQ--VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPG 165 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHH--cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5555566778999999999986532221 222222222 2678 67899999986532211 122222222
Q ss_pred -CCeEEEecccCCCC
Q 027607 146 -NLQYYEISAKSNYN 159 (221)
Q Consensus 146 -~~~~~~~s~~~~~g 159 (221)
.++++++|+.+|.+
T Consensus 166 ~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 166 DDIPIVSGSALLALE 180 (409)
T ss_pred CcceEEEcchhhccc
Confidence 36799999998864
No 239
>PRK13351 elongation factor G; Reviewed
Probab=99.65 E-value=1.6e-15 Score=131.08 Aligned_cols=117 Identities=21% Similarity=0.238 Sum_probs=84.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccC----Cccc------------CCcceeeeeeEEEecCcEEEEEEEecCCcccc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE----KKYE------------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~ 75 (221)
...+|+|+|+.|+|||||+++|+..... .... ...+.+.......+.+....+.+|||||+.++
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 4579999999999999999998753210 0000 01233344334455556789999999999888
Q ss_pred ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 131 (221)
...+..+++.+|++++|+|+++....+....|. .+.. .++|+++|+||+|+..
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~--~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR--YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh--cCCCEEEEEECCCCCC
Confidence 888888899999999999999876655444442 2322 3789999999999754
No 240
>COG2262 HflX GTPases [General function prediction only]
Probab=99.65 E-value=5.2e-15 Score=116.04 Aligned_cols=170 Identities=16% Similarity=0.122 Sum_probs=109.7
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeee--EEEecCcEEEEEEEecCCcccc--ccccccc--
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEKF--GGLRDGY-- 82 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~D~~g~~~~--~~~~~~~-- 82 (221)
....-..|+++|.+|+|||||+|++....... ......|.++. .+.+.+ +..+.+-||-|.-+. ..+...|
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~--~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFks 264 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYV--ADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKS 264 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeec--cccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHH
Confidence 34456789999999999999999966433221 22222233333 333333 457788899994221 1111222
Q ss_pred ----cccccEEEEEEECCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCC
Q 027607 83 ----YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN 157 (221)
Q Consensus 83 ----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (221)
...+|.++.|+|++++.....+......+... ....|+++|.||+|+...... ........-..+.+||++|
T Consensus 265 TLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~~~~~~~v~iSA~~~ 341 (411)
T COG2262 265 TLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI---LAELERGSPNPVFISAKTG 341 (411)
T ss_pred HHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh---hhhhhhcCCCeEEEEeccC
Confidence 45799999999999997666665555545443 257999999999997544331 1111111115899999999
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPA 184 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~ 184 (221)
.|++.+++.|...+........+.-|.
T Consensus 342 ~gl~~L~~~i~~~l~~~~~~~~l~lp~ 368 (411)
T COG2262 342 EGLDLLRERIIELLSGLRTEVTLELPY 368 (411)
T ss_pred cCHHHHHHHHHHHhhhcccceEEEcCc
Confidence 999999999999887655444444333
No 241
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.65 E-value=4.5e-16 Score=116.12 Aligned_cols=113 Identities=18% Similarity=0.220 Sum_probs=77.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccC--Ccc------------cCCcceeeeee--EEEec--------CcEEEEEEEecC
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFE--KKY------------EPTIGVEVHPL--DFFTN--------CGKIRFYCWDTA 70 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~--~~~------------~~~~~~~~~~~--~~~~~--------~~~~~i~~~D~~ 70 (221)
+|+++|+.++|||||+.+|+..... ... ....|.+.... ...+. +....+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 7999999999999999998753221 000 00112222211 12222 336889999999
Q ss_pred CccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcC
Q 027607 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (221)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 130 (221)
|+..+......+++.+|++++|+|+......+....+.. ... .+.|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~-~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQ-ALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHH-HHH--cCCCEEEEEECCCcc
Confidence 999998888889999999999999998765544322222 222 368999999999975
No 242
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.65 E-value=2.2e-15 Score=122.46 Aligned_cols=147 Identities=17% Similarity=0.232 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccC--C-----------------------------cccCCcceeeeeeEEEecCcEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFE--K-----------------------------KYEPTIGVEVHPLDFFTNCGKI 62 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 62 (221)
++|+++|+.++|||||+.+|+..... . ......|.+.+.....+..+..
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999998743211 0 0011223444554555556677
Q ss_pred EEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc------H
Q 027607 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK------A 136 (221)
Q Consensus 63 ~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~------~ 136 (221)
.+.++||||++.+.......+..+|++++|+|+.....-+....+. +.......++++++||+|+.+.... .
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~--~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~ 158 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY--IASLLGIRHVVLAVNKMDLVDYDEEVFENIKK 158 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH--HHHHcCCCcEEEEEEecccccchHHHHHHHHH
Confidence 8999999999887655555678999999999998764333222221 1222224568899999998642211 1
Q ss_pred HHHHHHhhc---CCeEEEecccCCCChHH
Q 027607 137 KQVTFHRKK---NLQYYEISAKSNYNFEK 162 (221)
Q Consensus 137 ~~~~~~~~~---~~~~~~~s~~~~~gv~~ 162 (221)
+...+.... ..+++++|+++|.|+.+
T Consensus 159 ~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 159 DYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 111122222 35699999999999875
No 243
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.65 E-value=3e-15 Score=122.63 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=101.6
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccC--C---------------------------cccCCcceeeeeeEEEecCc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--K---------------------------KYEPTIGVEVHPLDFFTNCG 60 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (221)
+.+.++|+++|+.++|||||+.+|+..... . ......|.+.......+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 468899999999999999999988752210 0 01112344555555556677
Q ss_pred EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhc-------cHHHHHHHHHhhcCCC-CEEEEEeCCCcCCc
Q 027607 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK-------NVPTWHRDLCRVCENI-PIVLCGNKVDVKNR 132 (221)
Q Consensus 61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~ 132 (221)
+..+.++|+||+++|.......+..+|++++|+|+++. +|+ .....+... . ..++ ++++++||+|+.+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~-~-~~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA-F-TLGVKQMICCCNKMDATTP 160 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH-H-HcCCCcEEEEEEcccCCch
Confidence 78999999999999988888888999999999999873 232 122211111 1 1256 57889999997622
Q ss_pred c--------ccHHHHHHHhhcC-----CeEEEecccCCCChH
Q 027607 133 Q--------VKAKQVTFHRKKN-----LQYYEISAKSNYNFE 161 (221)
Q Consensus 133 ~--------~~~~~~~~~~~~~-----~~~~~~s~~~~~gv~ 161 (221)
. ...+...+....+ ++++++|+++|.|+.
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 1 1223334444444 679999999999984
No 244
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.65 E-value=2e-15 Score=124.57 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=97.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcc------------c-------------------CCcceeeeeeEEEec
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY------------E-------------------PTIGVEVHPLDFFTN 58 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~------------~-------------------~~~~~~~~~~~~~~~ 58 (221)
..+.++|+++|+.++|||||+.+|+.....-.. . ...|.+.+.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 467799999999999999999998754221000 0 012333444444455
Q ss_pred CcEEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc--cH
Q 027607 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KA 136 (221)
Q Consensus 59 ~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~ 136 (221)
.....+.++||||++.+.......+..+|++++|+|+.....-+....+ .+.......|+++++||+|+.+... ..
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~lg~~~iIvvvNKiD~~~~~~~~~~ 181 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLLGIKHLVVAVNKMDLVDYSEEVFE 181 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHhCCCceEEEEEeeccccchhHHHH
Confidence 5667899999999887755444456899999999999875432222111 1122222357899999999864221 11
Q ss_pred HHH----HHHhh----cCCeEEEecccCCCChHHH
Q 027607 137 KQV----TFHRK----KNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 137 ~~~----~~~~~----~~~~~~~~s~~~~~gv~~~ 163 (221)
+.. .+... ...+++++|+++|.|+.++
T Consensus 182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 111 11222 2467999999999999764
No 245
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.65 E-value=4.3e-16 Score=134.39 Aligned_cols=143 Identities=18% Similarity=0.137 Sum_probs=95.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccC--C--ccc------------CCcceeeeeeEEEecCcEEEEEEEecCCcccc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE--K--KYE------------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~--~--~~~------------~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~ 75 (221)
+-.+|+|+|+.++|||||+++|+..... . ... ...|++.......+..++..+.+|||||+.++
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 3459999999999999999998742111 0 011 12355555556666667789999999999887
Q ss_pred ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC----eEEE
Q 027607 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL----QYYE 151 (221)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~ 151 (221)
...+...++.+|++++|+|+.+....+....| ..+.. .+.|+++++||+|+................+. ..++
T Consensus 89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ip 165 (689)
T TIGR00484 89 TVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR--YEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLP 165 (689)
T ss_pred hHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEec
Confidence 77777889999999999999886554433323 22322 37899999999998754422222222222222 2466
Q ss_pred ecccCC
Q 027607 152 ISAKSN 157 (221)
Q Consensus 152 ~s~~~~ 157 (221)
+|+..+
T Consensus 166 is~~~~ 171 (689)
T TIGR00484 166 IGAEDN 171 (689)
T ss_pred cccCCC
Confidence 776554
No 246
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.64 E-value=6.8e-16 Score=110.38 Aligned_cols=117 Identities=16% Similarity=0.244 Sum_probs=71.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEe-cCcEEEEEEEecCCccccccccccc---ccccc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGY---YIHGQ 87 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~D~~g~~~~~~~~~~~---~~~~d 87 (221)
++-.|+++|++|||||+|+.+|..+.....+.+... .....+ ......+.++|+||+.+.+...... ...+.
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~----n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k 77 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMEN----NIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAK 77 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSE----EEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccC----CceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCC
Confidence 456899999999999999999998866544333311 111111 1233468999999999887644443 77899
Q ss_pred EEEEEEECCC-hhhhccHHHHHHHHHhh----cCCCCEEEEEeCCCcCCc
Q 027607 88 CAIIMFDVTA-RLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNR 132 (221)
Q Consensus 88 ~~i~v~d~~~-~~s~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~ 132 (221)
++|||+|++. .........++..+... ....|++++.||.|+...
T Consensus 78 ~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 78 GIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 9999999974 33455555554444332 257899999999998653
No 247
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.64 E-value=1.9e-15 Score=102.11 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=68.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc---------cccccccc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------LRDGYYIH 85 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~---------~~~~~~~~ 85 (221)
+|+|+|.+|||||||+|+|+... ........+.+.......+......+.++||||...... .....+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~-~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK-LAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST-SSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccc-cccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 69999999999999999987543 223344445555543322222345567999999643211 11223478
Q ss_pred ccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeC
Q 027607 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK 126 (221)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK 126 (221)
+|++++|+|+.+... .....++..+. .+.|+++|+||
T Consensus 80 ~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred CCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence 999999999877322 22333444442 48999999998
No 248
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.64 E-value=2.2e-15 Score=125.41 Aligned_cols=121 Identities=18% Similarity=0.139 Sum_probs=84.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCcc-CC---c----------------ccCCcceeeeeeEEEecCcEEEEEEEecC
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-EK---K----------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTA 70 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~-~~---~----------------~~~~~~~~~~~~~~~~~~~~~~i~~~D~~ 70 (221)
.+..+|+|+|+.|+|||||+++|+.... .. . .....|.+.......+..++..+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3567999999999999999999874111 00 0 01122344444445566677899999999
Q ss_pred CccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc
Q 027607 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (221)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 134 (221)
|+.++......+++.+|++++|+|+++..... ...++..... .+.|+++++||+|+.....
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~--~~iPiiv~iNK~D~~~a~~ 148 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL--RDTPIFTFINKLDRDGREP 148 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh--cCCCEEEEEECCcccccCH
Confidence 99888877777889999999999998753222 2233333322 3899999999999876443
No 249
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.63 E-value=6.3e-15 Score=120.82 Aligned_cols=151 Identities=19% Similarity=0.202 Sum_probs=98.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCc--cCC---------------------------cccCCcceeeeeeEEEecCc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK---------------------------KYEPTIGVEVHPLDFFTNCG 60 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (221)
+.+.++|+++|+.++|||||+.+|+... ... ......|.+.+.....+..+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 3578999999999999999999987621 110 01112345555555566777
Q ss_pred EEEEEEEecCCccccccccccccccccEEEEEEECCChh---hh---ccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCc-
Q 027607 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY---KNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR- 132 (221)
Q Consensus 61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~- 132 (221)
...+.++|+||+.++.......+..+|++++|+|+.... .+ ......+..... .++| +++++||+|....
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~--~gi~~iiv~vNKmD~~~~~ 161 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT--LGVKQMIVCINKMDDKTVN 161 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH--cCCCeEEEEEEccccccch
Confidence 789999999999888776677788999999999998753 11 112222222222 2555 6789999995321
Q ss_pred ----c---ccHHHHHHHhhc-----CCeEEEecccCCCChHH
Q 027607 133 ----Q---VKAKQVTFHRKK-----NLQYYEISAKSNYNFEK 162 (221)
Q Consensus 133 ----~---~~~~~~~~~~~~-----~~~~~~~s~~~~~gv~~ 162 (221)
. ...+........ .++++++|+.+|.|+.+
T Consensus 162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1 111222222222 46799999999999853
No 250
>PRK00049 elongation factor Tu; Reviewed
Probab=99.63 E-value=7.5e-15 Score=119.00 Aligned_cols=157 Identities=13% Similarity=0.045 Sum_probs=102.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccC--------------CcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~ 75 (221)
..+.++|+++|+.++|||||+++|+..... .......|.+.......+..+...+.++||||+.++
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 467899999999999999999998762110 011124566666666666666778899999998877
Q ss_pred ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEE-EEEeCCCcCCccccH-----HHHHHHhh-----
Q 027607 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVKA-----KQVTFHRK----- 144 (221)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~-----~~~~~~~~----- 144 (221)
.......+..+|++++|+|+.....-+ ....+..+.. .+.|.+ +++||+|+.+..... +...+...
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHH--cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 665566678999999999998753222 2222333322 267876 589999986422111 11122222
Q ss_pred cCCeEEEecccCCC----------ChHHHHHHHHH
Q 027607 145 KNLQYYEISAKSNY----------NFEKPFLYLAR 169 (221)
Q Consensus 145 ~~~~~~~~s~~~~~----------gv~~~~~~l~~ 169 (221)
..++++++|+++|. |+..+++.|..
T Consensus 166 ~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~ 200 (396)
T PRK00049 166 DDTPIIRGSALKALEGDDDEEWEKKILELMDAVDS 200 (396)
T ss_pred cCCcEEEeecccccCCCCcccccccHHHHHHHHHh
Confidence 24678999999875 34455555554
No 251
>PLN03126 Elongation factor Tu; Provisional
Probab=99.63 E-value=3e-15 Score=123.19 Aligned_cols=148 Identities=14% Similarity=0.053 Sum_probs=98.6
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCcc------CC--------cccCCcceeeeeeEEEecCcEEEEEEEecCCccc
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEF------EK--------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~ 74 (221)
...+.++|+++|+.++|||||+++|+.... .. ......|.+.+.....+...+..+.++|+||+++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 467789999999999999999999885211 00 1123345666655555666677899999999988
Q ss_pred cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCccccH-----HHHHHHhh----
Q 027607 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKA-----KQVTFHRK---- 144 (221)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~-----~~~~~~~~---- 144 (221)
+.......+..+|++++|+|+.....-+. ..++..... .++| +++++||+|+.+..... +...+...
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ--VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH--cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 76666666778999999999987643222 222332222 2677 77899999986522111 12222222
Q ss_pred -cCCeEEEecccCCCC
Q 027607 145 -KNLQYYEISAKSNYN 159 (221)
Q Consensus 145 -~~~~~~~~s~~~~~g 159 (221)
..++++++|+.+|.+
T Consensus 234 ~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 234 GDDIPIISGSALLALE 249 (478)
T ss_pred cCcceEEEEEcccccc
Confidence 256799999988754
No 252
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.62 E-value=3.1e-14 Score=114.71 Aligned_cols=164 Identities=18% Similarity=0.255 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEe-----------------------c-CcEEEEEEEec
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----------------------N-CGKIRFYCWDT 69 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~-~~~~~i~~~D~ 69 (221)
++|+++|.+|||||||+|+|...... ....+++|..+..... + .....+++||+
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~--~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVE--IANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccc--ccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 68999999999999999997765442 1222333333322211 1 12367899999
Q ss_pred CCcc----ccccccccc---cccccEEEEEEECCC---------------hh-hhc----cHHHH---------------
Q 027607 70 AGQE----KFGGLRDGY---YIHGQCAIIMFDVTA---------------RL-TYK----NVPTW--------------- 107 (221)
Q Consensus 70 ~g~~----~~~~~~~~~---~~~~d~~i~v~d~~~---------------~~-s~~----~~~~~--------------- 107 (221)
||.. ....+...+ ++++|++++|+|+.. +. .++ .+..|
T Consensus 80 aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~ 159 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRK 159 (396)
T ss_pred CCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9953 233344445 789999999999971 10 000 00000
Q ss_pred -------------------------HHH-HHhh----------------------cCCCCEEEEEeCCCcCCccccHHHH
Q 027607 108 -------------------------HRD-LCRV----------------------CENIPIVLCGNKVDVKNRQVKAKQV 139 (221)
Q Consensus 108 -------------------------~~~-~~~~----------------------~~~~p~ivv~nK~D~~~~~~~~~~~ 139 (221)
... +... ...+|+++|+||.|....... ..
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~--l~ 237 (396)
T PRK09602 160 AQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEEN--IE 237 (396)
T ss_pred HhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHH--HH
Confidence 000 0000 024799999999997532111 11
Q ss_pred HHHhhcCCeEEEecccCCCChHH-HHHHHHHHHhCCCCCcccc
Q 027607 140 TFHRKKNLQYYEISAKSNYNFEK-PFLYLARKLAGDPNLHFVE 181 (221)
Q Consensus 140 ~~~~~~~~~~~~~s~~~~~gv~~-~~~~l~~~l~~~~~~~~~~ 181 (221)
.+.......++.+||..+.++.. +.+.+.+.+...+.++..+
T Consensus 238 ~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d 280 (396)
T PRK09602 238 RLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILG 280 (396)
T ss_pred HHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccc
Confidence 12222355689999999999999 8888888887777666443
No 253
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=6.4e-15 Score=118.73 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=120.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCcc-------CC------cccCCcceeeeeeEEEec---CcEEEEEEEecCCccc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-------EK------KYEPTIGVEVHPLDFFTN---CGKIRFYCWDTAGQEK 74 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~-------~~------~~~~~~~~~~~~~~~~~~---~~~~~i~~~D~~g~~~ 74 (221)
.+--+++|+-+-.-|||||..+|+.-.. .. ......|.|....+.++- +..+.+.++||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 3445799999999999999999875211 00 112344666666555443 4458999999999999
Q ss_pred cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH---HHHHHHhhcCCeEEE
Q 027607 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNLQYYE 151 (221)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~ 151 (221)
|.......+..++++++|+|+....--+.+..++..+.. +..+|.|+||+|++...... ..........-+.+.
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~---~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~ 214 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA---GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIY 214 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc---CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEE
Confidence 999999999999999999999988666666665555543 78899999999998755433 333444455567999
Q ss_pred ecccCCCChHHHHHHHHHHHh
Q 027607 152 ISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 152 ~s~~~~~gv~~~~~~l~~~l~ 172 (221)
+||++|.|+.+++++|++.+.
T Consensus 215 vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 215 VSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred EEeccCccHHHHHHHHHhhCC
Confidence 999999999999999999753
No 254
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.62 E-value=7.3e-15 Score=125.77 Aligned_cols=152 Identities=19% Similarity=0.152 Sum_probs=95.7
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCc------------cc-------------------CCcceeeeeeEEEe
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK------------YE-------------------PTIGVEVHPLDFFT 57 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~------------~~-------------------~~~~~~~~~~~~~~ 57 (221)
...+.++|+++|++++|||||+++|+.....-. .. ...|.+.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 345679999999999999999999886322100 00 01233333444445
Q ss_pred cCcEEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc--ccc
Q 027607 58 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR--QVK 135 (221)
Q Consensus 58 ~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~ 135 (221)
......+.++||||++.+.......+..+|++++|+|+.....-+.... ...+ ......++++++||+|+.+. ...
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~~~-~~~~~~~iivvvNK~D~~~~~~~~~ 177 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SFIA-SLLGIRHVVLAVNKMDLVDYDQEVF 177 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HHHH-HHhCCCeEEEEEEecccccchhHHH
Confidence 5566788999999988765444455788999999999986543222211 1111 22224678899999998641 111
Q ss_pred HH----HHHHHhhcC---CeEEEecccCCCChHH
Q 027607 136 AK----QVTFHRKKN---LQYYEISAKSNYNFEK 162 (221)
Q Consensus 136 ~~----~~~~~~~~~---~~~~~~s~~~~~gv~~ 162 (221)
.+ ...+....+ .+++++|+++|.|+.+
T Consensus 178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 11 112222333 4589999999999874
No 255
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=4.6e-15 Score=110.57 Aligned_cols=171 Identities=11% Similarity=0.176 Sum_probs=112.5
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc-------cccccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-------FGGLRD 80 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~-------~~~~~~ 80 (221)
....+.++|+++|.+|+|||||+|+++.+...+...-..+.+... ......+...+.+||+||..+ ++....
T Consensus 34 l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~-~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 34 LTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITT-RLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred hcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchh-hHHhhccccceEEecCCCcccchhhhHHHHHHHH
Confidence 346788999999999999999999988655433221122211111 111112336789999999654 555667
Q ss_pred cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc---------ccHHHH-----------H
Q 027607 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---------VKAKQV-----------T 140 (221)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---------~~~~~~-----------~ 140 (221)
.++...|.++++.++.++.---+.+.|..-+ ...-+.++++++|.+|..... ...... +
T Consensus 113 d~l~~~DLvL~l~~~~draL~~d~~f~~dVi-~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 113 DYLPKLDLVLWLIKADDRALGTDEDFLRDVI-ILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HHhhhccEEEEeccCCCccccCCHHHHHHHH-HhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 7788999999999999886544444444333 333358999999999974321 111111 1
Q ss_pred HHhhcCCeEEEecccCCCChHHHHHHHHHHHhCCCCCcccc
Q 027607 141 FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE 181 (221)
Q Consensus 141 ~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ 181 (221)
++.. -.+++.++...+-|++.+...+.+++..+.+.....
T Consensus 192 ~~q~-V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs~~a~ 231 (296)
T COG3596 192 LFQE-VKPVVAVSGRLPWGLKELVRALITALPVEARSPLAA 231 (296)
T ss_pred HHhh-cCCeEEeccccCccHHHHHHHHHHhCcccccchhhh
Confidence 1111 346777888999999999999999887766655433
No 256
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.61 E-value=7.2e-15 Score=122.44 Aligned_cols=119 Identities=18% Similarity=0.166 Sum_probs=84.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc-CccCC-------------------cccCCcceeeeeeEEEecCcEEEEEEEecC
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLT-GEFEK-------------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTA 70 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~ 70 (221)
.+..+|+|+|++|+|||||+++|+. ++... ......|.+.......+..++..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999864 21111 011122445555556667778899999999
Q ss_pred CccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc
Q 027607 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (221)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 132 (221)
|+..+.......++.+|++++|+|+++... .....++..... .+.|+++++||+|+...
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~--~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL--RDTPIFTFMNKLDRDIR 147 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh--cCCCEEEEEECccccCC
Confidence 998877766677889999999999987521 112233333322 37899999999998643
No 257
>PLN03127 Elongation factor Tu; Provisional
Probab=99.60 E-value=2.7e-14 Score=116.98 Aligned_cols=158 Identities=15% Similarity=0.064 Sum_probs=99.5
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcC-----ccC---------CcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG-----EFE---------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~ 75 (221)
+.+.++|+++|+.++|||||+++|..- ... .......|.|.+.....+...+..+.++||||+..+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 567899999999999999999997521 100 011223566677666677777778999999998776
Q ss_pred ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCccccHH-----HHHHHhh-----
Q 027607 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAK-----QVTFHRK----- 144 (221)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~-----~~~~~~~----- 144 (221)
.......+..+|++++|+|+.....-+. ...+..+.. .+.| +++++||+|+.+.....+ ...+...
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~--~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~ 214 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ--VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPG 214 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH--cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5544445567999999999986532221 222222222 2678 478899999864221111 1111111
Q ss_pred cCCeEEEeccc---CCCC-------hHHHHHHHHHH
Q 027607 145 KNLQYYEISAK---SNYN-------FEKPFLYLARK 170 (221)
Q Consensus 145 ~~~~~~~~s~~---~~~g-------v~~~~~~l~~~ 170 (221)
..++++++|+. +|.| +..+++.|...
T Consensus 215 ~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 215 DEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred CcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 13678888876 4444 45666665553
No 258
>PRK12739 elongation factor G; Reviewed
Probab=99.58 E-value=2.4e-14 Score=123.64 Aligned_cols=117 Identities=18% Similarity=0.121 Sum_probs=83.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccC----Cccc------------CCcceeeeeeEEEecCcEEEEEEEecCCcccc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE----KKYE------------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~ 75 (221)
+-.+|+|+|+.++|||||+++|+..... ..+. ...|++.......+..++..+.++||||+..+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 4568999999999999999998742110 0011 13455555555566667789999999998877
Q ss_pred ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 131 (221)
...+...++.+|++++|+|+......+... .+..+.. .++|.++++||+|+..
T Consensus 87 ~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~--~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 87 TIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADK--YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECCCCCC
Confidence 777777889999999999998764333222 2222222 3789999999999764
No 259
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.57 E-value=6.8e-14 Score=106.48 Aligned_cols=152 Identities=16% Similarity=0.091 Sum_probs=104.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccc-------ccccccccc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-------GLRDGYYIH 85 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~-------~~~~~~~~~ 85 (221)
.-+++++|.|++|||||+++|. +.. +.......+|.......+..++..+++.|+||.-.-. ...-...++
T Consensus 63 da~v~lVGfPsvGKStLL~~LT-nt~-seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLT-NTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHh-CCC-ccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 3689999999999999999955 333 3345556677777888888888999999999843211 233456889
Q ss_pred ccEEEEEEECCChhh-hccHHH--------------------------------------------HHHHHHhhc-----
Q 027607 86 GQCAIIMFDVTARLT-YKNVPT--------------------------------------------WHRDLCRVC----- 115 (221)
Q Consensus 86 ~d~~i~v~d~~~~~s-~~~~~~--------------------------------------------~~~~~~~~~----- 115 (221)
+|.+++|+|+..... .+.+.. .+.++.-++
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999985433 111111 111111110
Q ss_pred -----------------CCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHH
Q 027607 116 -----------------ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 116 -----------------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l 171 (221)
.-+|.++|.||.|+.... +....... ..++.+||..+.|++++.+.|.+.+
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e---~~~~l~~~--~~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLE---ELERLARK--PNSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccCHH---HHHHHHhc--cceEEEecccCCCHHHHHHHHHHhh
Confidence 124999999999987622 22222222 2889999999999999999999876
No 260
>PRK00007 elongation factor G; Reviewed
Probab=99.57 E-value=9.5e-15 Score=126.06 Aligned_cols=150 Identities=17% Similarity=0.138 Sum_probs=97.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc--CccCC--ccc------------CCcceeeeeeEEEecCcEEEEEEEecCCcccc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEK--KYE------------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~--~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~ 75 (221)
+-.+|+|+|..++|||||+++|+. +.... .+. ...|++.+.....+.+.+..+.++||||+.++
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 346999999999999999999874 22111 011 24455666655666666789999999998776
Q ss_pred ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC----eEEE
Q 027607 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL----QYYE 151 (221)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~ 151 (221)
.......++.+|++++|+|+......+....|. .+.. .+.|.++++||+|+.+..............+. ..++
T Consensus 89 ~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~--~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ip 165 (693)
T PRK00007 89 TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADK--YKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLP 165 (693)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEec
Confidence 655566688899999999998765444433332 2222 27899999999998764433222222223222 3466
Q ss_pred ecccCC-CChHHHH
Q 027607 152 ISAKSN-YNFEKPF 164 (221)
Q Consensus 152 ~s~~~~-~gv~~~~ 164 (221)
+|+..+ .|+-+++
T Consensus 166 isa~~~f~g~~d~~ 179 (693)
T PRK00007 166 IGAEDDFKGVVDLV 179 (693)
T ss_pred CccCCcceEEEEcc
Confidence 777665 3444433
No 261
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.57 E-value=5.1e-14 Score=107.93 Aligned_cols=158 Identities=16% Similarity=0.137 Sum_probs=103.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec-CcEEEEEEEecCCcccc----cccccccc---cccc
Q 027607 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKF----GGLRDGYY---IHGQ 87 (221)
Q Consensus 16 i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~----~~~~~~~~---~~~d 87 (221)
|+++|.|++|||||++++...+ +.....+-+|..+.-..+. .....|.+-|+||.-+- ..+-..|+ ..+.
T Consensus 162 VGLVG~PNaGKSTlls~vS~Ak--PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAK--PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcC--CcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 6899999999999999866543 3344455555555543333 34456899999995332 22333343 4578
Q ss_pred EEEEEEECCChhh---hccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCccccHH--HHHHHhhcCCeEE-EecccCCC
Q 027607 88 CAIIMFDVTARLT---YKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQYY-EISAKSNY 158 (221)
Q Consensus 88 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~-~~s~~~~~ 158 (221)
+++.|+|++..+. .++......++..+. .++|.++|+||+|+.......+ ...+....++... .+|+.++.
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~ 319 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE 319 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence 8999999986543 444445555555543 5899999999999544332222 2233333343322 29999999
Q ss_pred ChHHHHHHHHHHHhCCC
Q 027607 159 NFEKPFLYLARKLAGDP 175 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~ 175 (221)
|++.+...+.+.+...+
T Consensus 320 g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 320 GLDELLRALAELLEETK 336 (369)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999988776654
No 262
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.1e-13 Score=111.88 Aligned_cols=153 Identities=16% Similarity=0.190 Sum_probs=105.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecC---cEEEEEEEecCCccccccccccccccccE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC---GKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
+.+-|+++|+-..|||||+..+-.......- .-|.|.+..-+.+.. ..-.+.|+||||++.|..++..-..-+|.
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~E--aGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI 81 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGE--AGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI 81 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcccccc--CCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence 4567999999999999999986655443322 223333333333322 23478999999999999999888899999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCcCCccccHHHHHHH--------hhcCCeEEEecccCCCC
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFH--------RKKNLQYYEISAKSNYN 159 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~--------~~~~~~~~~~s~~~~~g 159 (221)
+++|+++++.---+.+ ..+... ..+.|++++.||+|..+........++. +.....++++||++|.|
T Consensus 82 aILVVa~dDGv~pQTi----EAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 82 AILVVAADDGVMPQTI----EAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEEEccCCcchhHH----HHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 9999999986422222 222221 2499999999999998543322222111 11225799999999999
Q ss_pred hHHHHHHHHHH
Q 027607 160 FEKPFLYLARK 170 (221)
Q Consensus 160 v~~~~~~l~~~ 170 (221)
+.+++..|+-.
T Consensus 158 i~eLL~~ill~ 168 (509)
T COG0532 158 IDELLELILLL 168 (509)
T ss_pred HHHHHHHHHHH
Confidence 99999877653
No 263
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.56 E-value=4.8e-14 Score=115.40 Aligned_cols=161 Identities=14% Similarity=0.144 Sum_probs=99.6
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccC--Cccee------eeee-----------EEEecC----------
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--TIGVE------VHPL-----------DFFTNC---------- 59 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~--~~~~~------~~~~-----------~~~~~~---------- 59 (221)
.-++.++|+++|+-..|||||+++|.. ........ ..|.| .... ......
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg-~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSG-VKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPG 108 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhC-CCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccc
Confidence 346789999999999999999999663 22111110 11111 1000 000000
Q ss_pred ------cEEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc
Q 027607 60 ------GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (221)
Q Consensus 60 ------~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 133 (221)
-...+.++|+||++.+.......+..+|++++|+|+............+. +.....-.++++|+||+|+.+..
T Consensus 109 ~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lgi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 109 CGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIMKLKHIIILQNKIDLVKEA 187 (460)
T ss_pred ccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHcCCCcEEEEEecccccCHH
Confidence 02468999999998876655566778999999999987421111112221 22222345789999999987533
Q ss_pred ccHHHH----HHHh---hcCCeEEEecccCCCChHHHHHHHHHHH
Q 027607 134 VKAKQV----TFHR---KKNLQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 134 ~~~~~~----~~~~---~~~~~~~~~s~~~~~gv~~~~~~l~~~l 171 (221)
...+.. .+.. ....+++++|+++|.|++.+++.|...+
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 222222 1111 1367899999999999999999888744
No 264
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.55 E-value=8.3e-14 Score=110.78 Aligned_cols=156 Identities=16% Similarity=0.155 Sum_probs=118.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcc-------------CCcccCCcceeeeeeEEEe-----cCcEEEEEEEecCCcccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEF-------------EKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKF 75 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~-------------~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~D~~g~~~~ 75 (221)
-+++++-+-.-|||||..+++.... ........|.|.....+.. ++..+.++++||||+-+|
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 4688999999999999999875211 1112223455555444332 346789999999999999
Q ss_pred ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC---eEEEe
Q 027607 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEI 152 (221)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~ 152 (221)
..-....+..+.+.++|+|++..---+.+...+..+.. +..++.|+||+|++......-..+...-.|+ ..+.+
T Consensus 90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~---~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~ 166 (603)
T COG0481 90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLV 166 (603)
T ss_pred EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc---CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeE
Confidence 98888889999999999999988777777777766655 7889999999999876655544444444454 47889
Q ss_pred cccCCCChHHHHHHHHHHHh
Q 027607 153 SAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 153 s~~~~~gv~~~~~~l~~~l~ 172 (221)
||++|.|+.++++.|.+.+.
T Consensus 167 SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 167 SAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred ecccCCCHHHHHHHHHhhCC
Confidence 99999999999999998753
No 265
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=9.6e-14 Score=108.97 Aligned_cols=153 Identities=20% Similarity=0.214 Sum_probs=103.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCcc-----------------------------CCcccCCcceeeeeeEEEecCc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF-----------------------------EKKYEPTIGVEVHPLDFFTNCG 60 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 60 (221)
..+.++++|+|+..+|||||+-+|+.... ........|.|.+.....+...
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 46889999999999999999999876111 0011123355666666667777
Q ss_pred EEEEEEEecCCccccccccccccccccEEEEEEECCChh---hh--ccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cc
Q 027607 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV 134 (221)
Q Consensus 61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~ 134 (221)
...+.++|+||+..+-..+-.-..++|+.|+|+|+++.+ .| .........+.....-..+|+++||+|..+- +.
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~ 163 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEE 163 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHH
Confidence 788999999998877666666778999999999999874 11 2222333333333345677889999998651 11
Q ss_pred -----cHHHHHHHhhc-----CCeEEEecccCCCChHH
Q 027607 135 -----KAKQVTFHRKK-----NLQYYEISAKSNYNFEK 162 (221)
Q Consensus 135 -----~~~~~~~~~~~-----~~~~~~~s~~~~~gv~~ 162 (221)
..+...+.... .++|+++|+..|.|+.+
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 11122222222 36699999999999854
No 266
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=2.3e-13 Score=109.93 Aligned_cols=156 Identities=15% Similarity=0.142 Sum_probs=108.2
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
..++..-|.|+|+-.-|||||+..|-+..........+.--...+.+.+. ++..++|.||||+..|..++..-..-.|.
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccE
Confidence 34466789999999999999999866544332222222222233444555 44789999999999999999988889999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCcCCccccHHHHHHH------hhc--CCeEEEecccCCCC
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFH------RKK--NLQYYEISAKSNYN 159 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~------~~~--~~~~~~~s~~~~~g 159 (221)
+++|+.+.|.---+. .+.+... ..+.|+++.+||+|.++.....-..++. ..+ ...++++|+++|.|
T Consensus 228 vVLVVAadDGVmpQT----~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n 303 (683)
T KOG1145|consen 228 VVLVVAADDGVMPQT----LEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN 303 (683)
T ss_pred EEEEEEccCCccHhH----HHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence 999999998642222 2333222 2589999999999987644332222221 112 35689999999999
Q ss_pred hHHHHHHHHH
Q 027607 160 FEKPFLYLAR 169 (221)
Q Consensus 160 v~~~~~~l~~ 169 (221)
+..+-+.+.-
T Consensus 304 l~~L~eaill 313 (683)
T KOG1145|consen 304 LDLLEEAILL 313 (683)
T ss_pred hHHHHHHHHH
Confidence 9998877665
No 267
>PRK09866 hypothetical protein; Provisional
Probab=99.51 E-value=9.8e-13 Score=109.29 Aligned_cols=107 Identities=16% Similarity=0.186 Sum_probs=68.4
Q ss_pred EEEEEEecCCcccc-----ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc--
Q 027607 62 IRFYCWDTAGQEKF-----GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-- 134 (221)
Q Consensus 62 ~~i~~~D~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-- 134 (221)
..+.++||||.... .......+..+|++++|+|++...+..+ ......+.......|+++|+||+|..++..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence 35788999997542 1123446889999999999987544333 123333333322369999999999864222
Q ss_pred cHHHHHHHh----hc---CCeEEEecccCCCChHHHHHHHHH
Q 027607 135 KAKQVTFHR----KK---NLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 135 ~~~~~~~~~----~~---~~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
......+.. .. ...++++||+.|.|+..++..|..
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 222222211 11 236899999999999998776655
No 268
>PRK12740 elongation factor G; Reviewed
Probab=99.49 E-value=2.4e-13 Score=117.42 Aligned_cols=110 Identities=20% Similarity=0.256 Sum_probs=76.2
Q ss_pred EcCCCCcHHHHHHHHhcCccC--C--cc------------cCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccc
Q 027607 19 VGDGGTGKTTFVKRHLTGEFE--K--KY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY 82 (221)
Q Consensus 19 ~G~~gsGKStL~~~l~~~~~~--~--~~------------~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~ 82 (221)
+|+.|+|||||+++|+..... . .. ....|.+.......+..++..+.+|||||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999998643211 0 00 0012344444444555567899999999998776667778
Q ss_pred cccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 131 (221)
+..+|++++|+|++..........| ..+.. .+.|+++|+||+|...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~--~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVW-RQAEK--YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH--cCCCEEEEEECCCCCC
Confidence 8999999999999886554433323 22222 3789999999999753
No 269
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2.2e-13 Score=97.71 Aligned_cols=112 Identities=17% Similarity=0.251 Sum_probs=77.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccc---cccEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI---HGQCAI 90 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~---~~d~~i 90 (221)
-.|.++|+.+||||+|+-+|..+.+...+. +..+....+..+.-.+.++|.||+.+.+.....++. .+-+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt-----Siepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT-----SIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeee-----eeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 479999999999999999988885544322 223333333333445899999999988877777766 689999
Q ss_pred EEEECCCh-hhhccHHHHHHHHHhh----cCCCCEEEEEeCCCcC
Q 027607 91 IMFDVTAR-LTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVK 130 (221)
Q Consensus 91 ~v~d~~~~-~s~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~ 130 (221)
||+|+..- ....++..++..+... ....|++++.||.|+.
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 99998642 2233444444443332 2478999999999973
No 270
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.47 E-value=2.6e-13 Score=117.57 Aligned_cols=117 Identities=22% Similarity=0.135 Sum_probs=80.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccC-----------Ccc-------cCCcceeeeeeEEEecCcEEEEEEEecCCcc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE-----------KKY-------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~-----------~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~ 73 (221)
+-.+|+++|+.++|||||+++|+..... ..+ ..+...........+.+.++.+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 4579999999999999999998752110 000 0122111222223356778899999999998
Q ss_pred ccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 131 (221)
++.......++.+|++++|+|+......+....|.. ... .+.|.++++||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHH--cCCCEEEEEEChhccc
Confidence 887777788999999999999987643333222322 212 3678899999999753
No 271
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.45 E-value=1e-12 Score=97.96 Aligned_cols=111 Identities=15% Similarity=0.220 Sum_probs=67.4
Q ss_pred EEEEEEecCCcccccc-cccc-----cccc--ccEEEEEEECCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCC
Q 027607 62 IRFYCWDTAGQEKFGG-LRDG-----YYIH--GQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVD 128 (221)
Q Consensus 62 ~~i~~~D~~g~~~~~~-~~~~-----~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D 128 (221)
....++||||+-+.-. .... .+.. .-++++++|.....+ . ..|...+...+ .+.|++++.||+|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~--p-~tFMSNMlYAcSilyktklp~ivvfNK~D 192 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTS--P-TTFMSNMLYACSILYKTKLPFIVVFNKTD 192 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCC--c-hhHHHHHHHHHHHHHhccCCeEEEEeccc
Confidence 4578999999754211 1111 1222 345666777643321 1 23333333222 5899999999999
Q ss_pred cCCccccHHHH------HHHh----------------------hcCCeEEEecccCCCChHHHHHHHHHHHhCCC
Q 027607 129 VKNRQVKAKQV------TFHR----------------------KKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 129 ~~~~~~~~~~~------~~~~----------------------~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~~~ 175 (221)
+.+.....+.. +.+. ..++..+.+|+.+|.|.+++|..+...+-+..
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~ 267 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYE 267 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHH
Confidence 98765433221 1111 12467888999999999999999988775543
No 272
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.44 E-value=1.4e-12 Score=98.95 Aligned_cols=120 Identities=8% Similarity=0.019 Sum_probs=71.4
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc---c-------
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---L------- 78 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~---~------- 78 (221)
.....++|+|+|.+|||||||+|++++..... .....+.+.....+.....+..+.+|||||...... .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~-v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAA-TSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 34567999999999999999999977654322 122222333333333333456899999999654421 0
Q ss_pred cccccc--cccEEEEEEECCChhhhccH-HHHHHHHHhhcC---CCCEEEEEeCCCcC
Q 027607 79 RDGYYI--HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVK 130 (221)
Q Consensus 79 ~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~---~~p~ivv~nK~D~~ 130 (221)
...++. ..+++++|..++... +... ...++.+..... -.++++|.||+|..
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r-~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYR-RDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 112232 467788876665432 2111 233333333221 35799999999974
No 273
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.44 E-value=1.3e-12 Score=100.81 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=71.4
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc-------cc
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-------DG 81 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~-------~~ 81 (221)
.+...++|+++|.+|+||||++|++++... .......+.+...........+..+.+|||||........ ..
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v-~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERI-ATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 457889999999999999999999885543 2222222222222222222346789999999975432211 11
Q ss_pred cc--ccccEEEEEEECCChhhhccH-HHHHHHHHhhc---CCCCEEEEEeCCCcC
Q 027607 82 YY--IHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVC---ENIPIVLCGNKVDVK 130 (221)
Q Consensus 82 ~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~---~~~p~ivv~nK~D~~ 130 (221)
++ ...|++++|..++.. .+... ...+..+.... --.++++++|+.|..
T Consensus 113 ~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 12 257899999665432 12211 22333333322 246789999999964
No 274
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.42 E-value=4.3e-13 Score=100.44 Aligned_cols=69 Identities=22% Similarity=0.271 Sum_probs=55.0
Q ss_pred HHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCC
Q 027607 137 KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL 212 (221)
Q Consensus 137 ~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (221)
++++........-..+..++|...+.+| ||++++++|+++++|||..+ +|+..+..+.+.+.+++.++.
T Consensus 122 ~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~--lARAL~~~p~lllLDEP~~g-----vD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 122 EALERVGMEDLRDRQIGELSGGQKQRVL--LARALAQNPDLLLLDEPFTG-----VDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred HHHHHcCchhhhCCcccccCcHHHHHHH--HHHHhccCCCEEEecCCccc-----CCHHHHHHHHHHHHHHHHCCC
Confidence 3333333333444557777777777766 99999999999999999999 999999999999999998753
No 275
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.42 E-value=2.3e-12 Score=96.00 Aligned_cols=163 Identities=12% Similarity=0.071 Sum_probs=90.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc-----------ccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-----------DGY 82 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~-----------~~~ 82 (221)
++|+++|.+||||||++|.+++.............+...........+..+.++||||..+..... ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 689999999999999999988766544332222233222222223345788999999953322111 111
Q ss_pred cccccEEEEEEECCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCccccH---------HHHHHHhhcCCeEE
Q 027607 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKA---------KQVTFHRKKNLQYY 150 (221)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~ 150 (221)
....+++++|+.+. ..+-.. ...+..+.... --..++||+|..|........ ....+....+-.|.
T Consensus 81 ~~g~ha~llVi~~~-r~t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG-RFTEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETT-B-SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecC-cchHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 34679999999988 322222 12222222221 135688899988864432211 12234444555666
Q ss_pred Eeccc------CCCChHHHHHHHHHHHhCCCCCc
Q 027607 151 EISAK------SNYNFEKPFLYLARKLAGDPNLH 178 (221)
Q Consensus 151 ~~s~~------~~~gv~~~~~~l~~~l~~~~~~~ 178 (221)
..+.. ....+.+++..|-+.+..+....
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~ 192 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQENGGQY 192 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHcCCCC
Confidence 66554 34577888888888887776444
No 276
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.42 E-value=5.7e-13 Score=87.49 Aligned_cols=136 Identities=19% Similarity=0.125 Sum_probs=88.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccc----ccccccEEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG----YYIHGQCAI 90 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~----~~~~~d~~i 90 (221)
|++++|..|+|||||++++.+... .+..|..+++.. . ..+||||.-..+..+.+ ....+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~d-------~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFND-------K----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceeeccC-------c----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 799999999999999999543322 222233222211 1 24699995433333322 246789999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcC-CeEEEecccCCCChHHHHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
+|-.++++++.-... +.. ...+|+|-|++|.|++..........+..+.| -++|.+|+.++.|+++++..|..
T Consensus 70 ~v~~and~~s~f~p~-----f~~-~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 70 YVHAANDPESRFPPG-----FLD-IGVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred eeecccCccccCCcc-----ccc-ccccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 999999986532211 111 12567999999999985433333344444444 46899999999999999988765
No 277
>PRK13768 GTPase; Provisional
Probab=99.41 E-value=1.4e-12 Score=99.58 Aligned_cols=113 Identities=13% Similarity=0.167 Sum_probs=71.3
Q ss_pred EEEEEecCCcccc---ccccccccc---c--ccEEEEEEECCChhhhccHH--HHHHHHHhhcCCCCEEEEEeCCCcCCc
Q 027607 63 RFYCWDTAGQEKF---GGLRDGYYI---H--GQCAIIMFDVTARLTYKNVP--TWHRDLCRVCENIPIVLCGNKVDVKNR 132 (221)
Q Consensus 63 ~i~~~D~~g~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~p~ivv~nK~D~~~~ 132 (221)
.+.+||+||+.+. +..+..+++ . .+++++|+|+.......+.. .|+........+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 5899999997553 233322222 2 78999999997644332221 222222212248999999999998654
Q ss_pred cccHHHHHH----------------------------HhhcC--CeEEEecccCCCChHHHHHHHHHHHhCCC
Q 027607 133 QVKAKQVTF----------------------------HRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 133 ~~~~~~~~~----------------------------~~~~~--~~~~~~s~~~~~gv~~~~~~l~~~l~~~~ 175 (221)
....+.... ....+ .+++++|+.++.|++++..+|.+.+....
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~~ 250 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGGE 250 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCCC
Confidence 322221111 11223 57899999999999999999998775543
No 278
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.41 E-value=5.5e-12 Score=99.39 Aligned_cols=72 Identities=17% Similarity=0.211 Sum_probs=54.3
Q ss_pred CcEEEEEEEecCCccccccccccccccccEEEEEEECCCh----------hhhccHHHHHHHHHhh--cCCCCEEEEEeC
Q 027607 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCGNK 126 (221)
Q Consensus 59 ~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~~p~ivv~nK 126 (221)
.++..+.+||++|+...+..|..++.+++++++|+|+++- ..+......+..+... ..+.|+++++||
T Consensus 158 ~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK 237 (317)
T cd00066 158 IKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNK 237 (317)
T ss_pred ecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccC
Confidence 3567899999999999999999999999999999999873 2233322333333222 258999999999
Q ss_pred CCcC
Q 027607 127 VDVK 130 (221)
Q Consensus 127 ~D~~ 130 (221)
.|+-
T Consensus 238 ~D~f 241 (317)
T cd00066 238 KDLF 241 (317)
T ss_pred hHHH
Confidence 9963
No 279
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.39 E-value=8.2e-13 Score=104.87 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=54.2
Q ss_pred cEEEEEEEecCCccccccccccccccccEEEEEEECCCh----------hhhccHHHHHHHHHhh--cCCCCEEEEEeCC
Q 027607 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (221)
Q Consensus 60 ~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~ 127 (221)
++..+.+||++|+...+..|..++.+++++++|+|+++- ..+......+..+... ..+.|+++++||.
T Consensus 182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence 456789999999999999999999999999999999963 2333333333333332 2578999999999
Q ss_pred CcC
Q 027607 128 DVK 130 (221)
Q Consensus 128 D~~ 130 (221)
|+-
T Consensus 262 D~~ 264 (342)
T smart00275 262 DLF 264 (342)
T ss_pred HhH
Confidence 963
No 280
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.2e-12 Score=111.53 Aligned_cols=136 Identities=17% Similarity=0.101 Sum_probs=101.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCC----------------cccCCcceeeeeeEEEecCc-EEEEEEEecCCcc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEK----------------KYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQE 73 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-~~~i~~~D~~g~~ 73 (221)
.+--+|+|+|+-.+|||||..+++...... ......|.|......++.+. .+.++++||||+-
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 345789999999999999999988632211 11123356666666677777 4999999999999
Q ss_pred ccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeE
Q 027607 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY 149 (221)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 149 (221)
++.......++-.|++++|+|+...-..+.-..|.+.... ++|.++++||+|........-........+...
T Consensus 88 DFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~---~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~ 160 (697)
T COG0480 88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY---GVPRILFVNKMDRLGADFYLVVEQLKERLGANP 160 (697)
T ss_pred ccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc---CCCeEEEEECccccccChhhhHHHHHHHhCCCc
Confidence 9999999999999999999999988766666667665544 899999999999876555444444444444433
No 281
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.36 E-value=2.4e-11 Score=96.73 Aligned_cols=156 Identities=16% Similarity=0.198 Sum_probs=110.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC--ccC------------CcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTG--EFE------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~ 78 (221)
--+|+|+-+-.-|||||+..|+.. .|. .......|.|.-.+...+.+++.++.|+||||+.+|..-
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 357999999999999999998862 221 112234466666666677788899999999999999999
Q ss_pred cccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc---HHHHHHHh-------hcCCe
Q 027607 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFHR-------KKNLQ 148 (221)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~-------~~~~~ 148 (221)
....+.-.|++++++|+.+..--+ .+..+..... .+.+-|+|+||+|.+..+.. .+.+.+.. +..++
T Consensus 85 VERvl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl~--~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP 161 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPMPQ-TRFVLKKALA--LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP 161 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCCCc-hhhhHHHHHH--cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence 999999999999999998764222 2222222222 26777889999999765433 23333322 34577
Q ss_pred EEEecccCCC----------ChHHHHHHHHHHH
Q 027607 149 YYEISAKSNY----------NFEKPFLYLARKL 171 (221)
Q Consensus 149 ~~~~s~~~~~----------gv~~~~~~l~~~l 171 (221)
++..|+..|. ++..+|+.|.+.+
T Consensus 162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 162 IVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred EEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 8888877553 5577787777753
No 282
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.35 E-value=2e-11 Score=91.83 Aligned_cols=141 Identities=13% Similarity=0.168 Sum_probs=83.5
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
...+...|+++|++|+|||||+++++............|. ... ....+..+.++||||.- .. .......+|+
T Consensus 35 ~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDv 106 (225)
T cd01882 35 EEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADL 106 (225)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HH-HHHHHHhcCE
Confidence 3566788999999999999999987654222222222221 111 12245678899999853 11 1234578999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhhcCCCCE-EEEEeCCCcCCccc-cHHH---H-H-HH--hhcCCeEEEecccCCCC
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQV-KAKQ---V-T-FH--RKKNLQYYEISAKSNYN 159 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~-~~~~---~-~-~~--~~~~~~~~~~s~~~~~g 159 (221)
+++++|++....... ..++..+... +.|. ++|+||.|+.+... ..+. + . +. ...+.+++.+|+++...
T Consensus 107 VllviDa~~~~~~~~-~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 107 VLLLIDASFGFEMET-FEFLNILQVH--GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred EEEEEecCcCCCHHH-HHHHHHHHHc--CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 999999986543222 1223333222 5675 45999999853221 1111 1 1 11 11246799999988754
Q ss_pred h
Q 027607 160 F 160 (221)
Q Consensus 160 v 160 (221)
+
T Consensus 184 ~ 184 (225)
T cd01882 184 Y 184 (225)
T ss_pred C
Confidence 4
No 283
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.35 E-value=2.1e-11 Score=89.77 Aligned_cols=98 Identities=11% Similarity=0.078 Sum_probs=60.6
Q ss_pred EEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCE--EEEEeCCCcCCccc--cHH
Q 027607 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI--VLCGNKVDVKNRQV--KAK 137 (221)
Q Consensus 62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~--ivv~nK~D~~~~~~--~~~ 137 (221)
....++++.|..-..... . .-++.++.|+|+.+...... .+. .+... ++++||+|+.+... ...
T Consensus 92 ~D~iiIEt~G~~l~~~~~-~--~l~~~~i~vvD~~~~~~~~~--~~~-------~qi~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFS-P--ELADLTIFVIDVAAGDKIPR--KGG-------PGITRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccc-h--hhhCcEEEEEEcchhhhhhh--hhH-------hHhhhccEEEEEhhhccccccccHHH
Confidence 345567777742222221 1 12578999999987655321 111 13333 88999999974211 111
Q ss_pred HHHHHh--hcCCeEEEecccCCCChHHHHHHHHHHH
Q 027607 138 QVTFHR--KKNLQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 138 ~~~~~~--~~~~~~~~~s~~~~~gv~~~~~~l~~~l 171 (221)
..+... ..+.+++++|+++|.|+.++|++|.+.+
T Consensus 160 ~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 160 MERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 111222 3467899999999999999999999754
No 284
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.35 E-value=2.4e-12 Score=113.26 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=80.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccC--Ccc------------cCCcceeeeeeE--EEe--------------cCcE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE--KKY------------EPTIGVEVHPLD--FFT--------------NCGK 61 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~--~~~------------~~~~~~~~~~~~--~~~--------------~~~~ 61 (221)
+-.+|+|+|+.++|||||+.+|+..... ... ....|.+..... ... ...+
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 4569999999999999999998854321 000 001122222111 111 1236
Q ss_pred EEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcC
Q 027607 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (221)
Q Consensus 62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 130 (221)
..+.++||||+.++.......++.+|++++|+|+......+....|.... . .+.|+++++||+|..
T Consensus 98 ~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~-~--~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-G--ERIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHH-H--CCCCEEEEEECCccc
Confidence 78899999999988877777789999999999999876555544444332 2 378999999999986
No 285
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.32 E-value=4.2e-11 Score=94.12 Aligned_cols=102 Identities=11% Similarity=0.011 Sum_probs=64.4
Q ss_pred EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHH---
Q 027607 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK--- 137 (221)
Q Consensus 61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--- 137 (221)
+..+.++||+|..... ......+|.++++.+.......+..+. .+. ...-++|+||+|+........
T Consensus 148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k~---gi~----E~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIKK---GIM----ELADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHHh---hhh----hhhheEEeehhcccchhHHHHHHH
Confidence 4678999999965322 224667999999976444443333221 111 223389999999865432211
Q ss_pred -HHHHHh-------hcCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607 138 -QVTFHR-------KKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 138 -~~~~~~-------~~~~~~~~~s~~~~~gv~~~~~~l~~~l~ 172 (221)
...... .+..+++.+|++++.|+++++..|.+.+.
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 111111 12257899999999999999999998654
No 286
>PTZ00416 elongation factor 2; Provisional
Probab=99.32 E-value=4.7e-12 Score=111.29 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=77.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcc--CCccc------------CCcceeeeee--EEEec--------CcEEEEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--EKKYE------------PTIGVEVHPL--DFFTN--------CGKIRFYCW 67 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~--~~~~~------------~~~~~~~~~~--~~~~~--------~~~~~i~~~ 67 (221)
+-.+|+|+|+.++|||||+++|+.... ..... ...|.+.... ...+. .....+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 345999999999999999999886321 10000 0111222211 11221 125679999
Q ss_pred ecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcC
Q 027607 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (221)
Q Consensus 68 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 130 (221)
||||+.++.......++.+|++++|+|+......+....| ..+.. .+.|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~--~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ--ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH--cCCCEEEEEEChhhh
Confidence 9999988877777778999999999999887554443333 33322 268999999999986
No 287
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.31 E-value=6.8e-12 Score=100.59 Aligned_cols=159 Identities=13% Similarity=0.094 Sum_probs=101.3
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc----ccccccc---
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----FGGLRDG--- 81 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~----~~~~~~~--- 81 (221)
.+.+.-+++|+|.|++|||||+|.+..... .+.+...+|..-....++.+-.+++++||||.-+ .++....
T Consensus 164 IDp~trTlllcG~PNVGKSSf~~~vtradv--evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsI 241 (620)
T KOG1490|consen 164 IDPNTRTLLVCGYPNVGKSSFNNKVTRADD--EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQII 241 (620)
T ss_pred CCCCcCeEEEecCCCCCcHhhccccccccc--ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHH
Confidence 467778999999999999999997544332 2233333333333334455556889999999421 1111111
Q ss_pred --ccccccEEEEEEECCChh--hhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cccHH---HHH-HHhhcCCeEEEe
Q 027607 82 --YYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAK---QVT-FHRKKNLQYYEI 152 (221)
Q Consensus 82 --~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~---~~~-~~~~~~~~~~~~ 152 (221)
..+--.+++++.|++... |......++..+.....+.|+|+|+||+|.... ...++ ... .....+++++.+
T Consensus 242 TALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t 321 (620)
T KOG1490|consen 242 TALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT 321 (620)
T ss_pred HHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence 112235788999998654 444445566666666679999999999997543 33332 222 333445899999
Q ss_pred cccCCCChHHHHHHHHH
Q 027607 153 SAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 153 s~~~~~gv~~~~~~l~~ 169 (221)
|+.+..|+..+......
T Consensus 322 S~~~eegVm~Vrt~ACe 338 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACE 338 (620)
T ss_pred cccchhceeeHHHHHHH
Confidence 99999999765544433
No 288
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.31 E-value=2.9e-12 Score=96.67 Aligned_cols=109 Identities=14% Similarity=0.155 Sum_probs=54.5
Q ss_pred EEEEEecCCcccccccccccc--------ccccEEEEEEECCChhhhcc-HHHHHHHHH-hhcCCCCEEEEEeCCCcCCc
Q 027607 63 RFYCWDTAGQEKFGGLRDGYY--------IHGQCAIIMFDVTARLTYKN-VPTWHRDLC-RVCENIPIVLCGNKVDVKNR 132 (221)
Q Consensus 63 ~i~~~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~ 132 (221)
.+.++|||||.++...+.... ...-++++++|+....+... +..++..+. ...-+.|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 689999999876554443322 33457888888764322111 111111111 11138999999999998762
Q ss_pred ccc------------------------HHHHHHHhhcC-C-eEEEecccCCCChHHHHHHHHHHH
Q 027607 133 QVK------------------------AKQVTFHRKKN-L-QYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 133 ~~~------------------------~~~~~~~~~~~-~-~~~~~s~~~~~gv~~~~~~l~~~l 171 (221)
... .+........+ . .++++|+.++.|+.+++..|-+++
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 200 00011111112 3 699999999999999998887754
No 289
>PTZ00258 GTP-binding protein; Provisional
Probab=99.30 E-value=7.4e-11 Score=94.43 Aligned_cols=84 Identities=18% Similarity=0.000 Sum_probs=56.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc-----------------EEEEEEEecCCcc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-----------------KIRFYCWDTAGQE 73 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~i~~~D~~g~~ 73 (221)
..-++|+++|.||||||||+|++.... ....+.+++|..+....+... ...+.++||||..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~--~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ--VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc--ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 345799999999999999999964333 344555666666555443322 2348999999964
Q ss_pred cccc----cc---ccccccccEEEEEEECC
Q 027607 74 KFGG----LR---DGYYIHGQCAIIMFDVT 96 (221)
Q Consensus 74 ~~~~----~~---~~~~~~~d~~i~v~d~~ 96 (221)
.-.. +. ...++.+|++++|+|+.
T Consensus 97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 3211 11 22367899999999984
No 290
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=3.8e-11 Score=91.52 Aligned_cols=161 Identities=16% Similarity=0.114 Sum_probs=105.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCC--ccee--------------------eeeeEEEec------CcEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT--IGVE--------------------VHPLDFFTN------CGKI 62 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~--~~~~--------------------~~~~~~~~~------~~~~ 62 (221)
.++++|+++|+-.-|||||.++|.+ .+....+.. .|.+ .+...-... .--.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsG-vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R 86 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSG-VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVR 86 (415)
T ss_pred CcceEeeeeeecccchhhheehhhc-eeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEE
Confidence 6899999999999999999999554 322111100 0000 000000000 1125
Q ss_pred EEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHH
Q 027607 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH 142 (221)
Q Consensus 63 ~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 142 (221)
++.|.|.||++-....+..-..-.|+.++|+.++.+...-..+.-+-.+. ...-..++++-||+|+..+....+..+..
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Ale-Iigik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALE-IIGIKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHh-hhccceEEEEecccceecHHHHHHHHHHH
Confidence 78999999998765554545556799999999998765544333333322 22467889999999997765554443332
Q ss_pred h-------hcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607 143 R-------KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 143 ~-------~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
. ..+.+++++||..+.|++.+++.|...+..
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 2 236789999999999999999999986543
No 291
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.30 E-value=3.2e-12 Score=87.04 Aligned_cols=113 Identities=24% Similarity=0.268 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCccc-CCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYE-PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (221)
+||+++|..|+|||+|+.++..+.+...+. ++.+ +......+.+.++.++.|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999987666643222 2222 233335567788999999
Q ss_pred EECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChH
Q 027607 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~ 161 (221)
++.++..++..+ |...+.... .+.|.++++||.|+.+... ........++++|+++|.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~------~~~~~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQ------VATEEGLEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCc------CCHHHHHHHHHHhCCCcchhh
Confidence 999999988765 665554432 4678899999999743221 111222345567888888874
No 292
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=8.7e-11 Score=95.90 Aligned_cols=159 Identities=19% Similarity=0.196 Sum_probs=108.0
Q ss_pred CCCcccCCceEEEEEcCCCCcHHHHHHHHhcC--------------------cc---------CCcccCCcceeeeeeEE
Q 027607 5 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTG--------------------EF---------EKKYEPTIGVEVHPLDF 55 (221)
Q Consensus 5 ~~~~~~~~~~~i~v~G~~gsGKStL~~~l~~~--------------------~~---------~~~~~~~~~~~~~~~~~ 55 (221)
..+......++++|+|...+|||||+.+++.. .. ........|++......
T Consensus 169 ~~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~ 248 (603)
T KOG0458|consen 169 DEQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTT 248 (603)
T ss_pred ccccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeE
Confidence 34556668899999999999999999998761 11 11122344677777777
Q ss_pred EecCcEEEEEEEecCCccccccccccccccccEEEEEEECCChh---hhcc--HHHHHHHHHhhcCCCCEEEEEeCCCcC
Q 027607 56 FTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKN--VPTWHRDLCRVCENIPIVLCGNKVDVK 130 (221)
Q Consensus 56 ~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~--~~~~~~~~~~~~~~~p~ivv~nK~D~~ 130 (221)
.++.....+.++|.||+..|..-.-.-...+|+.++|+|++... .|+. ...-+..+.....-..++|++||+|+.
T Consensus 249 ~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V 328 (603)
T KOG0458|consen 249 WFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLV 328 (603)
T ss_pred EEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeeccccc
Confidence 78888889999999998888776666778899999999998543 2321 112222333333456778999999985
Q ss_pred C-ccccHH-----HHHHH-hh-----cCCeEEEecccCCCChHHH
Q 027607 131 N-RQVKAK-----QVTFH-RK-----KNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 131 ~-~~~~~~-----~~~~~-~~-----~~~~~~~~s~~~~~gv~~~ 163 (221)
+ .+.+.+ ...+. .. ..+.|++||..+|+|+-..
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 4 221211 11222 22 2357999999999998543
No 293
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.30 E-value=3.3e-11 Score=92.96 Aligned_cols=149 Identities=19% Similarity=0.232 Sum_probs=102.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccC------------C-------------------cccCCcceeeeeeEEEecC
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE------------K-------------------KYEPTIGVEVHPLDFFTNC 59 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~------------~-------------------~~~~~~~~~~~~~~~~~~~ 59 (221)
...+|++.+|.-.=|||||+-+|+..... + ......|.|.+.-...+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 35699999999999999999998873220 0 0011224455554455566
Q ss_pred cEEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc------
Q 027607 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ------ 133 (221)
Q Consensus 60 ~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------ 133 (221)
....|.+.||||++.|...+..-...+|..|+++|+...-.-+ .+-...+.....-+.+++.+||+|+.+..
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~Q--TrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~ 161 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQ--TRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEA 161 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHH--hHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHH
Confidence 6788999999999998776666778899999999996542211 12222222333467788999999997632
Q ss_pred ccHHHHHHHhhcCC---eEEEecccCCCChH
Q 027607 134 VKAKQVTFHRKKNL---QYYEISAKSNYNFE 161 (221)
Q Consensus 134 ~~~~~~~~~~~~~~---~~~~~s~~~~~gv~ 161 (221)
+..+-..++...++ .++++||+.|.|+-
T Consensus 162 I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 162 IVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 23344466666664 58999999999984
No 294
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.29 E-value=9e-11 Score=89.67 Aligned_cols=158 Identities=18% Similarity=0.286 Sum_probs=105.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEe--cCcEEEEEEEecCCcccccccccccccc---c-
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--NCGKIRFYCWDTAGQEKFGGLRDGYYIH---G- 86 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~D~~g~~~~~~~~~~~~~~---~- 86 (221)
--+|+|+|.+|+|||||+.+|- +.. .+....|..|....+.- .....++.+|-..|..-..++....+.. +
T Consensus 52 gk~VlvlGdn~sGKtsLi~klq-g~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQ-GSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhh-ccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 3589999999999999999944 332 23344444444443322 2234577888888865444444333322 2
Q ss_pred cEEEEEEECCChhh-hccHHHHHHHHHhhcC-------------------------------------------------
Q 027607 87 QCAIIMFDVTARLT-YKNVPTWHRDLCRVCE------------------------------------------------- 116 (221)
Q Consensus 87 d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~------------------------------------------------- 116 (221)
-.+|++.+++++.. ++.+..|...+.++..
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 35788999999853 4666666554433210
Q ss_pred -------------CCCEEEEEeCCCcC-----Ccccc--------HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607 117 -------------NIPIVLCGNKVDVK-----NRQVK--------AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 117 -------------~~p~ivv~nK~D~~-----~~~~~--------~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~ 170 (221)
++|++||++|+|.. ..... ....++|.++|...+.+|++...|++.+..+|.+.
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence 14999999999962 22222 23447888999999999999999999999999997
Q ss_pred HhC
Q 027607 171 LAG 173 (221)
Q Consensus 171 l~~ 173 (221)
++.
T Consensus 289 ~yG 291 (473)
T KOG3905|consen 289 SYG 291 (473)
T ss_pred hcC
Confidence 654
No 295
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.29 E-value=1.5e-10 Score=94.51 Aligned_cols=164 Identities=16% Similarity=0.186 Sum_probs=115.9
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d 87 (221)
..+++-+.+.|+|+.++|||.|+++++++.+......+....+........+....+.+.|++-. ....+...- ..+|
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD 497 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD 497 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence 45778899999999999999999999988876654455544444444444455556666676654 233332333 6789
Q ss_pred EEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCe-EEEecccCCCChHHHH
Q 027607 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPF 164 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~-~~~~s~~~~~gv~~~~ 164 (221)
++.++||.+++.+|..+...++..... ...|++.|++|+|+.... .....-.++.+++++ ...+|..+... ..+|
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf 575 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELF 575 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHH
Confidence 999999999999998877665554443 689999999999986533 222226788888876 56677775333 8899
Q ss_pred HHHHHHHhCCCC
Q 027607 165 LYLARKLAGDPN 176 (221)
Q Consensus 165 ~~l~~~l~~~~~ 176 (221)
..|+.+ ..+|.
T Consensus 576 ~kL~~~-A~~Ph 586 (625)
T KOG1707|consen 576 IKLATM-AQYPH 586 (625)
T ss_pred HHHHHh-hhCCC
Confidence 999885 44444
No 296
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.28 E-value=2.4e-11 Score=92.39 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=76.7
Q ss_pred cccccccccccccccEEEEEEECCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc-ccHHHHHHHhhcCCeEE
Q 027607 73 EKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYY 150 (221)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~ 150 (221)
++++.+.+.+++++|++++|+|++++. ++..+..|+..+.. .+.|+++|+||+|+.+.. ...+........+..++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~ 101 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVL 101 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEE
Confidence 567788888999999999999999887 88899999876644 489999999999996433 22233344445788999
Q ss_pred EecccCCCChHHHHHHHHH
Q 027607 151 EISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 151 ~~s~~~~~gv~~~~~~l~~ 169 (221)
.+|+++|.|++++|..+..
T Consensus 102 ~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 102 MTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEecCCchhHHHHHhhhcC
Confidence 9999999999999987764
No 297
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.27 E-value=7.1e-11 Score=104.54 Aligned_cols=103 Identities=18% Similarity=0.279 Sum_probs=69.9
Q ss_pred EEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cc--------
Q 027607 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV-------- 134 (221)
Q Consensus 64 i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~-------- 134 (221)
+.+|||||++.+..++...+..+|++++|+|+++...-+.. ..+..+.. .+.|+++|+||+|+... ..
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~-e~I~~lk~--~~iPiIVViNKiDL~~~~~~~~~~~~~~ 604 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTI-EAINILRQ--YKTPFVVAANKIDLIPGWNISEDEPFLL 604 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHH-HHHHHHHH--cCCCEEEEEECCCCccccccccchhhhh
Confidence 89999999999888777778889999999999874221111 11222222 27899999999998531 10
Q ss_pred -----cHHHH-H-------H---Hh---------------hcCCeEEEecccCCCChHHHHHHHHH
Q 027607 135 -----KAKQV-T-------F---HR---------------KKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 135 -----~~~~~-~-------~---~~---------------~~~~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
.+... + . .. ...++++++||++|.|++++..+|..
T Consensus 605 ~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 605 NFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 00000 0 0 01 12457899999999999999987764
No 298
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.27 E-value=9.9e-11 Score=87.02 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=80.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCC----cccCCc--ceeeee------eEEEecC------------------
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK----KYEPTI--GVEVHP------LDFFTNC------------------ 59 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~----~~~~~~--~~~~~~------~~~~~~~------------------ 59 (221)
+..-..|+|+|+.|||||||+++++...... ...... +.+... ....+.+
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~ 98 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDL 98 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHh
Confidence 3456789999999999999999987531100 000000 000000 0000000
Q ss_pred --cEEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc--c
Q 027607 60 --GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--K 135 (221)
Q Consensus 60 --~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~ 135 (221)
....+.++++.|.-.. ...+....+..+.|+|+.+.... ....... ...|.++++||+|+.+... .
T Consensus 99 ~~~~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~~-----~~~~~~~--~~~a~iiv~NK~Dl~~~~~~~~ 168 (207)
T TIGR00073 99 PLDDIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDDK-----PLKYPGM--FKEADLIVINKADLAEAVGFDV 168 (207)
T ss_pred ccCCCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccch-----hhhhHhH--HhhCCEEEEEHHHccccchhhH
Confidence 1234566677662100 01111223445567777644311 1111111 1567899999999865321 1
Q ss_pred HHHHHHHhh--cCCeEEEecccCCCChHHHHHHHHHH
Q 027607 136 AKQVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 136 ~~~~~~~~~--~~~~~~~~s~~~~~gv~~~~~~l~~~ 170 (221)
.+....... ...+++.+|+++|.|++++++++.+.
T Consensus 169 ~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 169 EKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 222222222 24789999999999999999999874
No 299
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.26 E-value=1e-11 Score=98.28 Aligned_cols=161 Identities=17% Similarity=0.219 Sum_probs=78.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCc---ceeeeeeEEEecCcEEEEEEEecCCccccccccccc----
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI---GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY---- 82 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~---- 82 (221)
+...++|+|+|.+|+|||||+|+|.+-+......... .+|.....+... +.-.+.+||.||..........|
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 4567999999999999999999975422211111122 223333333222 22368999999964433333333
Q ss_pred -cccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCc--CC------ccccHH-H----HHHH----hh
Q 027607 83 -YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV--KN------RQVKAK-Q----VTFH----RK 144 (221)
Q Consensus 83 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~--~~------~~~~~~-~----~~~~----~~ 144 (221)
+..-|.+|++.+-.-... ++ .+...+... ++|+.+|-+|+|. .+ +....+ . ...| ..
T Consensus 111 ~~~~yD~fiii~s~rf~~n--dv-~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 111 KFYRYDFFIIISSERFTEN--DV-QLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp TGGG-SEEEEEESSS--HH--HH-HHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred cccccCEEEEEeCCCCchh--hH-HHHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 456788777766432221 11 122333333 8899999999995 11 111111 1 1111 12
Q ss_pred cC---CeEEEecccCCC--ChHHHHHHHHHHHhCCCC
Q 027607 145 KN---LQYYEISAKSNY--NFEKPFLYLARKLAGDPN 176 (221)
Q Consensus 145 ~~---~~~~~~s~~~~~--gv~~~~~~l~~~l~~~~~ 176 (221)
.+ -++|-+|...-. +...+.+.|.+.+....+
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence 23 357888887643 567788888877665554
No 300
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.26 E-value=5.8e-11 Score=86.03 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=46.8
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLP 213 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (221)
+|-++...+|+|++..+|++.+.|||+++ +||+-..+..+.++.++.++++
T Consensus 138 SGGQqQRVAIARALaM~P~vmLFDEPTSA-----LDPElv~EVL~vm~~LA~eGmT 188 (240)
T COG1126 138 SGGQQQRVAIARALAMDPKVMLFDEPTSA-----LDPELVGEVLDVMKDLAEEGMT 188 (240)
T ss_pred CcHHHHHHHHHHHHcCCCCEEeecCCccc-----CCHHHHHHHHHHHHHHHHcCCe
Confidence 35566778899999999999999999999 9999999999999999999864
No 301
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.26 E-value=8.7e-12 Score=93.90 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=46.3
Q ss_pred EEecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 150 YEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 150 ~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
..++.++| -+....+|++++.+++++.++|||++. +|...+.++.+.+++++.+
T Consensus 134 r~~~~LSG--GerQrv~iArALaQ~~~iLLLDEPTs~-----LDi~~Q~evl~ll~~l~~~ 187 (258)
T COG1120 134 RPVDELSG--GERQRVLIARALAQETPILLLDEPTSH-----LDIAHQIEVLELLRDLNRE 187 (258)
T ss_pred CcccccCh--hHHHHHHHHHHHhcCCCEEEeCCCccc-----cCHHHHHHHHHHHHHHHHh
Confidence 33556655 455567899999999999999999999 9999999999999999844
No 302
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.25 E-value=2.8e-11 Score=105.31 Aligned_cols=116 Identities=22% Similarity=0.200 Sum_probs=77.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccC--CcccC------------CcceeeeeeE----EEecCcEEEEEEEecCCcc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE--KKYEP------------TIGVEVHPLD----FFTNCGKIRFYCWDTAGQE 73 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~--~~~~~------------~~~~~~~~~~----~~~~~~~~~i~~~D~~g~~ 73 (221)
+-.+|+++|+.++|||||+.+|+..... ..... ..|.+..... ....+.+..+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 3457999999999999999998753211 10000 0112222111 1223356789999999998
Q ss_pred ccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcC
Q 027607 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (221)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 130 (221)
++.......++.+|++++|+|+......+....|... .. .+.|.++++||+|+.
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~-~~--~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQA-LR--ERVKPVLFINKVDRL 152 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHH-HH--cCCCeEEEEECchhh
Confidence 8877777788999999999999876444433333322 22 256889999999975
No 303
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.22 E-value=2e-10 Score=91.03 Aligned_cols=81 Identities=16% Similarity=0.017 Sum_probs=54.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEe--cCc---------------EEEEEEEecCCccccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--NCG---------------KIRFYCWDTAGQEKFG 76 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------------~~~i~~~D~~g~~~~~ 76 (221)
++|+++|.||||||||+|++.... ....+.+++|..+....+ ... ...+.++|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~--~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 789999999999999999976554 233444555555443222 211 1358999999964321
Q ss_pred c----cccc---ccccccEEEEEEECC
Q 027607 77 G----LRDG---YYIHGQCAIIMFDVT 96 (221)
Q Consensus 77 ~----~~~~---~~~~~d~~i~v~d~~ 96 (221)
. +... .++.+|++++|+|+.
T Consensus 81 ~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 1112 367899999999984
No 304
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.20 E-value=5.7e-10 Score=88.71 Aligned_cols=152 Identities=17% Similarity=0.186 Sum_probs=87.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCC--------------cccCCcc---eeeeeeE-------EE-ecCcEEEEEEE
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK--------------KYEPTIG---VEVHPLD-------FF-TNCGKIRFYCW 67 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~--------------~~~~~~~---~~~~~~~-------~~-~~~~~~~i~~~ 67 (221)
++.|+|+|+.++|||||+|+|..-...+ ...+..| +|.+++. +. .++-...+.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 5899999999999999999976541111 2234455 4444433 22 12334688999
Q ss_pred ecCCcccccc--------------c---------------cccccc-cccEEEEEE-ECCC----hhhh-ccHHHHHHHH
Q 027607 68 DTAGQEKFGG--------------L---------------RDGYYI-HGQCAIIMF-DVTA----RLTY-KNVPTWHRDL 111 (221)
Q Consensus 68 D~~g~~~~~~--------------~---------------~~~~~~-~~d~~i~v~-d~~~----~~s~-~~~~~~~~~~ 111 (221)
||+|...-.. - ....+. +++..++|. |.+- +..+ ..-..++..+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 9999321111 0 111244 788888887 6641 1111 2233556666
Q ss_pred HhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccC--CCChHHHHHH
Q 027607 112 CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS--NYNFEKPFLY 166 (221)
Q Consensus 112 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~gv~~~~~~ 166 (221)
... ++|+++|+||.|-...........+....+.+++.+|+.. -..+..+++.
T Consensus 177 k~~--~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~ 231 (492)
T TIGR02836 177 KEL--NKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESMRESDILSVLEE 231 (492)
T ss_pred Hhc--CCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHH
Confidence 554 8999999999993222222222344556677877777653 3344444333
No 305
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.20 E-value=9.2e-10 Score=90.34 Aligned_cols=164 Identities=23% Similarity=0.297 Sum_probs=109.6
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecC--cEEEEEEEecCCcccccccccccccc-
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC--GKIRFYCWDTAGQEKFGGLRDGYYIH- 85 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~D~~g~~~~~~~~~~~~~~- 85 (221)
...++-.|+|+|..++|||||+.+|.... ....+.+..|....+.-.. ...++.+|-..|...+..+....+..
T Consensus 21 ~~~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~ 97 (472)
T PF05783_consen 21 KLPSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPE 97 (472)
T ss_pred cCCCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcc
Confidence 34566799999999999999999965332 2344566666555443322 23578999988865555555443332
Q ss_pred ---ccEEEEEEECCChhhh-ccHHHHHHHHHhhc------------------------------C---------------
Q 027607 86 ---GQCAIIMFDVTARLTY-KNVPTWHRDLCRVC------------------------------E--------------- 116 (221)
Q Consensus 86 ---~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~------------------------------~--------------- 116 (221)
--.+++|.|.+.+..+ +.+..|+..+..+. .
T Consensus 98 ~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~ 177 (472)
T PF05783_consen 98 NLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSS 177 (472)
T ss_pred cccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccc
Confidence 2468889999988654 33444432221100 0
Q ss_pred ------------------CCCEEEEEeCCCcCC-----ccccHH--------HHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607 117 ------------------NIPIVLCGNKVDVKN-----RQVKAK--------QVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 117 ------------------~~p~ivv~nK~D~~~-----~~~~~~--------~~~~~~~~~~~~~~~s~~~~~gv~~~~~ 165 (221)
++|++||++|+|... ....++ ...+|..+|..++.+|++...+++.++.
T Consensus 178 ~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~ 257 (472)
T PF05783_consen 178 DDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYK 257 (472)
T ss_pred ccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHH
Confidence 259999999999522 111122 3467888999999999999999999999
Q ss_pred HHHHHHhCCC
Q 027607 166 YLARKLAGDP 175 (221)
Q Consensus 166 ~l~~~l~~~~ 175 (221)
+|.+.++..+
T Consensus 258 yi~h~l~~~~ 267 (472)
T PF05783_consen 258 YILHRLYGFP 267 (472)
T ss_pred HHHHHhccCC
Confidence 9999886644
No 306
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.20 E-value=1.3e-10 Score=83.52 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=44.0
Q ss_pred EEEEEecCCccc----cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCC
Q 027607 63 RFYCWDTAGQEK----FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (221)
Q Consensus 63 ~i~~~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (221)
.+.++||||... ...++..++..+|++++|.+++...+-.....+.+..... ...+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT--CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence 478999999643 2345677789999999999999866555554555444433 44588999984
No 307
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.19 E-value=2.7e-11 Score=87.55 Aligned_cols=54 Identities=22% Similarity=0.238 Sum_probs=47.5
Q ss_pred ecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 152 ~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-|+..-+|-+.....|+|++.-.|++.++|||+++ +|+-....+++.+.++..+
T Consensus 145 ~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSA-----LDPIsT~kIEeLi~eLk~~ 198 (253)
T COG1117 145 KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSA-----LDPISTLKIEELITELKKK 198 (253)
T ss_pred CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccc-----cCchhHHHHHHHHHHHHhc
Confidence 55666667777778899999999999999999999 9999999999999998854
No 308
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.19 E-value=5.6e-10 Score=86.31 Aligned_cols=116 Identities=19% Similarity=0.255 Sum_probs=66.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcc----------cCCcceeeeeeEEEecCcEEEEEEEecCCcccccc---cc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---LR 79 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~---~~ 79 (221)
.|+|+|+|.+|+|||||+|.|+........ ..+...........-++..+.+.++||||...... .+
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999998875443321 11222233333444455678899999999321100 00
Q ss_pred ---ccc-------------------c--ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607 80 ---DGY-------------------Y--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 80 ---~~~-------------------~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 131 (221)
..| + ...++++++++.+... +..+ -+..+......+++|.|+.|+|...
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~--Di~~mk~Ls~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPL--DIEFMKRLSKRVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HH--HHHHHHHHTTTSEEEEEESTGGGS-
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHH--HHHHHHHhcccccEEeEEecccccC
Confidence 000 1 1468999999876421 1111 1233444445789999999999743
No 309
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.18 E-value=7.8e-11 Score=85.84 Aligned_cols=160 Identities=18% Similarity=0.277 Sum_probs=98.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeee--EEEecCcEEEEEEEecCCcccc-----cccccccccc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEKF-----GGLRDGYYIH 85 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~D~~g~~~~-----~~~~~~~~~~ 85 (221)
.-||+++|.+||||||+--.+..+...-. ....|-+.+.. ...+- ++..+.+||++|++.+ .......+++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D-~~rlg~tidveHsh~Rfl-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARD-TRRLGATIDVEHSHVRFL-GNLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhh-hhccCCcceeeehhhhhh-hhheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 46899999999999998776554332111 11222222211 11222 4577899999998732 2344667899
Q ss_pred ccEEEEEEECCChhhhccHHHH---HHHHHhhcCCCCEEEEEeCCCcCCccccHHHH--------HHHhhcCCeEEEecc
Q 027607 86 GQCAIIMFDVTARLTYKNVPTW---HRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV--------TFHRKKNLQYYEISA 154 (221)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~---~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~--------~~~~~~~~~~~~~s~ 154 (221)
.+++++|||+...+--.++..+ ++.+.++++...+....+|+|+......+... ......++.++++|.
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 9999999999877654554444 34455666777888899999986544333222 122234566777776
Q ss_pred cCCCChHHHHHHHHHHHhCCC
Q 027607 155 KSNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 155 ~~~~gv~~~~~~l~~~l~~~~ 175 (221)
.+ +.+-+.+..+...+.+++
T Consensus 162 wD-etl~KAWS~iv~~lipn~ 181 (295)
T KOG3886|consen 162 WD-ETLYKAWSSIVYNLIPNV 181 (295)
T ss_pred hh-HHHHHHHHHHHHhhCCCh
Confidence 53 444455555555555544
No 310
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=9.1e-10 Score=84.94 Aligned_cols=159 Identities=18% Similarity=0.110 Sum_probs=93.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCc-----ccCCcceeeeeeE--EEe-------cCcEEEEEEEecCCccccccc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK-----YEPTIGVEVHPLD--FFT-------NCGKIRFYCWDTAGQEKFGGL 78 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~-----~~~~~~~~~~~~~--~~~-------~~~~~~i~~~D~~g~~~~~~~ 78 (221)
.++++++|.-.||||||.+++..-.-... .+...|.+.+--. ..+ .+....+.++|+||+...-..
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt 86 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT 86 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence 49999999999999999999764222111 1122233322211 111 123467899999997543222
Q ss_pred cccccccccEEEEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCccccH-HHH----HHHh-------hc
Q 027607 79 RDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQV----TFHR-------KK 145 (221)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~----~~~~-------~~ 145 (221)
.-.-..-.|..++|+|+....--+... ..+..+ .....++|+||.|...+.... ... +... ..
T Consensus 87 iiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~----~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g 162 (522)
T KOG0461|consen 87 IIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL----LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDG 162 (522)
T ss_pred HHhhhheeeeeeEEEehhcccccccchhhhhhhh----hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCC
Confidence 222233458889999998654322221 111111 245677888998864432221 111 1111 12
Q ss_pred CCeEEEecccCC----CChHHHHHHHHHHHhCCC
Q 027607 146 NLQYYEISAKSN----YNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 146 ~~~~~~~s~~~~----~gv~~~~~~l~~~l~~~~ 175 (221)
+.+++++|+..| .++.++.+.|.+++..-.
T Consensus 163 ~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~ 196 (522)
T KOG0461|consen 163 NSPIVEVSAADGYFKEEMIQELKEALESRIFEPK 196 (522)
T ss_pred CCceeEEecCCCccchhHHHHHHHHHHHhhcCCC
Confidence 368999999999 888998888888776544
No 311
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.16 E-value=6.8e-11 Score=95.81 Aligned_cols=158 Identities=21% Similarity=0.355 Sum_probs=120.4
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
-+.+++|++|+|..++|||+|+++++.+.+.....+.- ..++.++.+++....+.+.|.+|... ..|-..+|+
T Consensus 26 rsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~--~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvda 98 (749)
T KOG0705|consen 26 RSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG--GRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDA 98 (749)
T ss_pred cccchhheeeeecccCCceeeeeeeccceeccccCCcC--ccceeeEEeeccceEeeeecccCCch-----hhhhhhccc
Confidence 46789999999999999999999999999876544433 35666777788888889999888322 456678999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcC----CccccHHHH-HHHhhcCCeEEEecccCCCChH
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK----NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~----~~~~~~~~~-~~~~~~~~~~~~~s~~~~~gv~ 161 (221)
+|+||...+..+|+.+..+...+..+. ...|+++++++.-.. +-....+.. ..+....+.+++.++.+|.++.
T Consensus 99 vIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~ 178 (749)
T KOG0705|consen 99 VVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVE 178 (749)
T ss_pred eEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHH
Confidence 999999999999998887766665432 467888888875432 222222333 4455667889999999999999
Q ss_pred HHHHHHHHHHhC
Q 027607 162 KPFLYLARKLAG 173 (221)
Q Consensus 162 ~~~~~l~~~l~~ 173 (221)
..|+.+...+..
T Consensus 179 rvf~~~~~k~i~ 190 (749)
T KOG0705|consen 179 RVFQEVAQKIVQ 190 (749)
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 312
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.13 E-value=4.9e-10 Score=87.85 Aligned_cols=101 Identities=10% Similarity=-0.017 Sum_probs=62.0
Q ss_pred EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHH---
Q 027607 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK--- 137 (221)
Q Consensus 61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--- 137 (221)
++.+.++||+|.... ....+..+|.++++..... ...+..+...+ ..+|.++|+||+|+........
T Consensus 126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~---~~el~~~~~~l----~~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGT---GDDLQGIKAGL----MEIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCc---cHHHHHHHHHH----hhhccEEEEEcccccchhHHHHHHH
Confidence 467889999985321 1234566788777744332 23333222222 2678899999999875432111
Q ss_pred H-----HHHHh---hcCCeEEEecccCCCChHHHHHHHHHHH
Q 027607 138 Q-----VTFHR---KKNLQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 138 ~-----~~~~~---~~~~~~~~~s~~~~~gv~~~~~~l~~~l 171 (221)
. ..... .+..+++.+|++++.|+++++.+|.+.+
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 0 01111 1224589999999999999999998864
No 313
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=3.7e-10 Score=94.52 Aligned_cols=160 Identities=22% Similarity=0.230 Sum_probs=103.0
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCcc----CCcccCCcceeeeeeEEE--------ec----CcEEEEEEEecCC
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEF----EKKYEPTIGVEVHPLDFF--------TN----CGKIRFYCWDTAG 71 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~----~~~~~~~~~~~~~~~~~~--------~~----~~~~~i~~~D~~g 71 (221)
...-+..-|||+|+-.+|||-|+..+-.... .+.....+|-++.+..-. -. .+---+.++||||
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg 549 (1064)
T KOG1144|consen 470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG 549 (1064)
T ss_pred chhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC
Confidence 3455677899999999999999998554222 122233444444443210 00 1112467899999
Q ss_pred ccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcC-------Ccccc---------
Q 027607 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-------NRQVK--------- 135 (221)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-------~~~~~--------- 135 (221)
++.|..++......+|.+|+|+|+...---+.+ .-++.++.. +.|+||.+||+|.. +..+.
T Consensus 550 hEsFtnlRsrgsslC~~aIlvvdImhGlepqti-ESi~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 550 HESFTNLRSRGSSLCDLAILVVDIMHGLEPQTI-ESINLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred chhhhhhhhccccccceEEEEeehhccCCcchh-HHHHHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 999999999999999999999999865322222 123333333 89999999999951 11100
Q ss_pred --HH--------HHHHHhh--------------cCCeEEEecccCCCChHHHHHHHHHH
Q 027607 136 --AK--------QVTFHRK--------------KNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 136 --~~--------~~~~~~~--------------~~~~~~~~s~~~~~gv~~~~~~l~~~ 170 (221)
.+ ..+++.. ..+.++++||.+|.|+.+++.+|++.
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence 00 0011110 01357889999999999999888773
No 314
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.10 E-value=3.2e-10 Score=88.79 Aligned_cols=119 Identities=14% Similarity=0.126 Sum_probs=75.4
Q ss_pred EEecCcEEEEEEEecCCccccccccccccccccEEEEEEECCChhh--h-----ccHHHHHHHHHhhc-----CCCCEEE
Q 027607 55 FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT--Y-----KNVPTWHRDLCRVC-----ENIPIVL 122 (221)
Q Consensus 55 ~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s--~-----~~~~~~~~~~~~~~-----~~~p~iv 122 (221)
..+.-++..+.++|++||...+..|.+.+.++++++||+++++-.- + ..+..-+..+...+ .+.++|+
T Consensus 188 ~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiL 267 (354)
T KOG0082|consen 188 VEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIIL 267 (354)
T ss_pred EEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEE
Confidence 3344456889999999999999999999999999999999985321 1 11222233333222 4789999
Q ss_pred EEeCCCcCCcc-----------------ccHHHHHHHh--------h--cCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607 123 CGNKVDVKNRQ-----------------VKAKQVTFHR--------K--KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 123 v~nK~D~~~~~-----------------~~~~~~~~~~--------~--~~~~~~~~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
++||.|+-.+. ...++..+.. . ..+.+..+.|..-.+++.+|..+...+.+
T Consensus 268 FLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~ 345 (354)
T KOG0082|consen 268 FLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQ 345 (354)
T ss_pred EeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHH
Confidence 99999962211 1111111111 1 22334556677777777777777766544
No 315
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.10 E-value=3.5e-10 Score=84.60 Aligned_cols=99 Identities=8% Similarity=0.029 Sum_probs=58.5
Q ss_pred EEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH--
Q 027607 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-- 139 (221)
Q Consensus 62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-- 139 (221)
+.+.++.|.|--... .....-+|.+++|....-....+.++.=+-++ .=++|+||+|...........
T Consensus 122 ~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi-------aDi~vVNKaD~~gA~~~~~~l~~ 191 (266)
T PF03308_consen 122 FDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI-------ADIFVVNKADRPGADRTVRDLRS 191 (266)
T ss_dssp -SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH--------SEEEEE--SHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh-------ccEEEEeCCChHHHHHHHHHHHH
Confidence 446666665521111 22345689999999988777777665433333 337899999965433222211
Q ss_pred --HHHh----hcCCeEEEecccCCCChHHHHHHHHHH
Q 027607 140 --TFHR----KKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 140 --~~~~----~~~~~~~~~s~~~~~gv~~~~~~l~~~ 170 (221)
.+.. .+..+++.+|+.++.|++++++.|.+.
T Consensus 192 ~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 192 MLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp HHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 1111 123579999999999999999988873
No 316
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=5.8e-10 Score=88.44 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=95.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc-Cc-------cCC------------cccCCcceeeeeeEEEecCcEEEEEEEecCC
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLT-GE-------FEK------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~-~~-------~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g 71 (221)
++-+.+|+-+|.+|||||...|+. |+ ... ......|++..+.-..++..+..+.+.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 557899999999999999998775 11 111 1112334555555666777788999999999
Q ss_pred ccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEE
Q 027607 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151 (221)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 151 (221)
++++..=....+..+|.+++|+|+....--+.+ +++...+ ..+.|++-++||.|...+..-+-..+....+++...+
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-KLfeVcr--lR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~P 167 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-KLFEVCR--LRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAP 167 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHHH-HHHHHHh--hcCCceEEEeeccccccCChHHHHHHHHHHhCcceec
Confidence 999887777778889999999999765322221 2222222 2489999999999988766555555555566655444
No 317
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.09 E-value=7.7e-11 Score=86.47 Aligned_cols=55 Identities=18% Similarity=0.295 Sum_probs=46.4
Q ss_pred EEEecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 149 YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 149 ~~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+..++.++|..-+. ..|+++++++|++.+-|||.+. +|+...+.+.+.++.++++
T Consensus 142 ~qra~~LSGGQQQR--VaIARaL~Q~pkiILADEPvas-----LDp~~a~~Vm~~l~~in~~ 196 (258)
T COG3638 142 YQRASTLSGGQQQR--VAIARALVQQPKIILADEPVAS-----LDPESAKKVMDILKDINQE 196 (258)
T ss_pred HHHhccCCcchhHH--HHHHHHHhcCCCEEecCCcccc-----cChhhHHHHHHHHHHHHHH
Confidence 45566676555555 7799999999999999999999 9999999999999987765
No 318
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.09 E-value=5e-10 Score=84.30 Aligned_cols=69 Identities=9% Similarity=0.096 Sum_probs=43.6
Q ss_pred EEEEEEecCCcccc-------------cccccccccc-ccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCC
Q 027607 62 IRFYCWDTAGQEKF-------------GGLRDGYYIH-GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (221)
Q Consensus 62 ~~i~~~D~~g~~~~-------------~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (221)
..+.++|+||.... ..+...|+.+ .+.+++|+|+.....-.....+...+.. ...++++|+||.
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--~~~rti~ViTK~ 202 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--QGERTIGVITKL 202 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--cCCcEEEEEECC
Confidence 46889999996421 1233445664 4588999998754332222233333332 378999999999
Q ss_pred CcCCc
Q 027607 128 DVKNR 132 (221)
Q Consensus 128 D~~~~ 132 (221)
|..++
T Consensus 203 D~~~~ 207 (240)
T smart00053 203 DLMDE 207 (240)
T ss_pred CCCCc
Confidence 98654
No 319
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=9.1e-10 Score=91.31 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=81.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccC---------------CcceeeeeeEEE-----ecCcEEEEEEEecCC
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP---------------TIGVEVHPLDFF-----TNCGKIRFYCWDTAG 71 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~---------------~~~~~~~~~~~~-----~~~~~~~i~~~D~~g 71 (221)
.-.+|+++|+-++|||+|+..|........... ..|.+......+ ..++.+.++++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 557899999999999999998665433221111 112222222222 245678899999999
Q ss_pred ccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCc
Q 027607 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (221)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 129 (221)
+-.+.......++.+|++++++|+.+.-.++.-+.....+. ...|+.+|+||+|+
T Consensus 207 HVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq---~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 207 HVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ---NRLPIVVVINKVDR 261 (971)
T ss_pred cccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh---ccCcEEEEEehhHH
Confidence 98888887888999999999999998876655333333332 38999999999995
No 320
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.06 E-value=3.1e-09 Score=82.95 Aligned_cols=46 Identities=24% Similarity=0.277 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 161 ~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.+....|+.++..+|+++++|||+++ +|+.......+.++.++.++
T Consensus 141 ~kqrl~ia~aL~~~P~lliLDEPt~G-----LDp~~~~~~~~~l~~l~~~g 186 (293)
T COG1131 141 MKQRLSIALALLHDPELLILDEPTSG-----LDPESRREIWELLRELAKEG 186 (293)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCcC-----CCHHHHHHHHHHHHHHHhCC
Confidence 44456799999999999999999999 99999999999999999876
No 321
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.05 E-value=1.5e-09 Score=90.94 Aligned_cols=119 Identities=10% Similarity=0.075 Sum_probs=69.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc-------c---ccc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------L---RDG 81 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~-------~---~~~ 81 (221)
..++|+|+|.+|+||||++|+++............+++.. ........+..+.++||||...... + ...
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 4579999999999999999998876533222222333332 2221122346799999999654311 0 111
Q ss_pred ccc--cccEEEEEEECCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCC
Q 027607 82 YYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN 131 (221)
Q Consensus 82 ~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~ 131 (221)
++. ..|++++|..++.......-..++..+.... --..+|||+|+.|...
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 222 4789999987753322212223344443322 2457899999999753
No 322
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.04 E-value=3.2e-09 Score=75.91 Aligned_cols=76 Identities=11% Similarity=0.013 Sum_probs=47.8
Q ss_pred cEEEEEEECCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCcCCcccc--HHHHH--HHhhcCCeEEEecccCCCCh
Q 027607 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVK--AKQVT--FHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~--~~~~~--~~~~~~~~~~~~s~~~~~gv 160 (221)
..-|+|+|++..+..- ++..+ ...=++|+||.|+....-. +.... ..-.-..+++.+|.++|.|+
T Consensus 119 ~~~v~VidvteGe~~P---------~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~ 189 (202)
T COG0378 119 HLRVVVIDVTEGEDIP---------RKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGL 189 (202)
T ss_pred ceEEEEEECCCCCCCc---------ccCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCH
Confidence 3778888887663211 01000 1133789999999764333 11111 22234678999999999999
Q ss_pred HHHHHHHHHHH
Q 027607 161 EKPFLYLARKL 171 (221)
Q Consensus 161 ~~~~~~l~~~l 171 (221)
+++..|+....
T Consensus 190 ~~~~~~i~~~~ 200 (202)
T COG0378 190 DEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHhhc
Confidence 99999887653
No 323
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=2.5e-09 Score=85.07 Aligned_cols=155 Identities=15% Similarity=0.048 Sum_probs=106.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccC-CcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
.|+..|.-.-|||||++++.+.... .+.....|++.+...+........+.++|.||++++-...-.-+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 5788999999999999995544331 133345567766666666656668999999999887665555667889999999
Q ss_pred ECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH----HHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
++++.-..+... .-.+.........++|+||+|..+....+ +..........+++.+|+.+|+|+.++.+.|..
T Consensus 82 ~~deGl~~qtgE--hL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~ 159 (447)
T COG3276 82 AADEGLMAQTGE--HLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELID 159 (447)
T ss_pred eCccCcchhhHH--HHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHH
Confidence 997653222211 11112222345569999999987643222 222222244567899999999999999999998
Q ss_pred HH
Q 027607 170 KL 171 (221)
Q Consensus 170 ~l 171 (221)
..
T Consensus 160 L~ 161 (447)
T COG3276 160 LL 161 (447)
T ss_pred hh
Confidence 65
No 324
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.04 E-value=3e-09 Score=80.87 Aligned_cols=100 Identities=10% Similarity=0.009 Sum_probs=62.5
Q ss_pred EEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHH
Q 027607 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF 141 (221)
Q Consensus 62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 141 (221)
+.+.|+.|.|--.. -.....-+|.+++|.-..-....+.++.=+-++ -=++|+||.|.............
T Consensus 144 ~DvIIVETVGvGQs---ev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi-------aDi~vINKaD~~~A~~a~r~l~~ 213 (323)
T COG1703 144 YDVIIVETVGVGQS---EVDIANMADTFLVVMIPGAGDDLQGIKAGIMEI-------ADIIVINKADRKGAEKAARELRS 213 (323)
T ss_pred CCEEEEEecCCCcc---hhHHhhhcceEEEEecCCCCcHHHHHHhhhhhh-------hheeeEeccChhhHHHHHHHHHH
Confidence 45667777663211 123345678888887776666555554433333 33789999997654333222211
Q ss_pred H----------hhcCCeEEEecccCCCChHHHHHHHHHHH
Q 027607 142 H----------RKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 142 ~----------~~~~~~~~~~s~~~~~gv~~~~~~l~~~l 171 (221)
+ ..+..+++.+|+..|+|+.+++..|.+-.
T Consensus 214 al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 214 ALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred HHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 1 12345689999999999999999888754
No 325
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=6.5e-09 Score=81.52 Aligned_cols=82 Identities=20% Similarity=0.094 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEe--------------c--C--cEEEEEEEecCCcc-
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--------------N--C--GKIRFYCWDTAGQE- 73 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~--~--~~~~i~~~D~~g~~- 73 (221)
.++++|+|.||||||||+|++..... ...+.+-+|..+..... . . -...+.++|++|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a--~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~ 79 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGA--EIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK 79 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCc--cccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence 37899999999999999999765542 22333333333332211 1 1 13578999998853
Q ss_pred ---ccccccccc---cccccEEEEEEECC
Q 027607 74 ---KFGGLRDGY---YIHGQCAIIMFDVT 96 (221)
Q Consensus 74 ---~~~~~~~~~---~~~~d~~i~v~d~~ 96 (221)
.-.++-..| ++++|+++-|+++.
T Consensus 80 GAs~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 80 GASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred CcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 233333333 78899999999987
No 326
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1.8e-08 Score=79.10 Aligned_cols=162 Identities=15% Similarity=0.266 Sum_probs=89.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCc---------ccCCcceeeeeeEEEecCcEEEEEEEecCCcccc---cccc-
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK---------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---GGLR- 79 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~---~~~~- 79 (221)
.|++.++|++|.|||||+|.|+....... ...+...........-++-.++++++||||.-+. ...|
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 39999999999999999999887644321 1112233333333344455678999999993211 1111
Q ss_pred ---------------------ccccc--cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc--
Q 027607 80 ---------------------DGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-- 134 (221)
Q Consensus 80 ---------------------~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-- 134 (221)
+.-+. .++++++.+..+.. .+..++ +..+...+..+.+|.|+.|+|......
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D--i~~Mk~l~~~vNiIPVI~KaD~lT~~El~ 177 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD--IEFMKKLSKKVNLIPVIAKADTLTKDELN 177 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh--HHHHHHHhccccccceeeccccCCHHHHH
Confidence 11122 45777887776532 122221 223334445889999999999754322
Q ss_pred --cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHHhCCCCCccc
Q 027607 135 --KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180 (221)
Q Consensus 135 --~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~ 180 (221)
.....+.....++.++....... +.-+....+.+...-++.+.
T Consensus 178 ~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~~~PFAIi 222 (366)
T KOG2655|consen 178 QFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLKSSIPFAII 222 (366)
T ss_pred HHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHhhcCCeEEE
Confidence 22233455566777666544433 33333334444444444433
No 327
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.00 E-value=8.1e-09 Score=76.50 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=43.6
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+|-+....+|+|+++.+|++.+.|||+.. +|.+....+.+.++++..+
T Consensus 144 SGGqqQRVAIARAL~~~P~iilADEPTgn-----LD~~t~~~V~~ll~~~~~~ 191 (226)
T COG1136 144 SGGQQQRVAIARALINNPKIILADEPTGN-----LDSKTAKEVLELLRELNKE 191 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeeCcccc-----CChHHHHHHHHHHHHHHHh
Confidence 46677778899999999999999999999 9999999999999998765
No 328
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.98 E-value=5.9e-09 Score=80.15 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=38.4
Q ss_pred CCCEEEEEeCCCcCCcc--ccHHHHHHHhh--cCCeEEEecccCCCChHHHHHHHHHH
Q 027607 117 NIPIVLCGNKVDVKNRQ--VKAKQVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 117 ~~p~ivv~nK~D~~~~~--~~~~~~~~~~~--~~~~~~~~s~~~~~gv~~~~~~l~~~ 170 (221)
..+-++|+||+|+.... ........... ...+++.+|+++|.|++.+..||...
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45668999999996521 12222222222 35789999999999999999999774
No 329
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.97 E-value=1.6e-09 Score=75.63 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=42.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~ 72 (221)
+++++|.+|+|||||+|+++..... ......|.+.+...+.++. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV-SVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999998766543 4556677777766666654 4799999994
No 330
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.97 E-value=7.7e-10 Score=81.71 Aligned_cols=45 Identities=20% Similarity=0.345 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 161 ~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+.-...|++++..+|++.++|||..+ +.+....++.+.+++++..
T Consensus 154 ~qR~LEIArALa~~P~lLLLDEPaAG-----ln~~e~~~l~~~i~~i~~~ 198 (250)
T COG0411 154 QQRRLEIARALATQPKLLLLDEPAAG-----LNPEETEELAELIRELRDR 198 (250)
T ss_pred HhHHHHHHHHHhcCCCEEEecCccCC-----CCHHHHHHHHHHHHHHHhc
Confidence 33346799999999999999999999 9999999999999999875
No 331
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.97 E-value=2.3e-09 Score=76.20 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=42.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCC
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g 71 (221)
+.++|+++|.+|+|||||+|+++... .....+..|+|.....+.... .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~-~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKK-VCKVAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCC-ceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 46899999999999999999976543 445566777777665554432 377999999
No 332
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.97 E-value=1.5e-09 Score=83.36 Aligned_cols=79 Identities=15% Similarity=0.023 Sum_probs=51.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEe--cCc---------------EEEEEEEecCCcccccc-
Q 027607 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--NCG---------------KIRFYCWDTAGQEKFGG- 77 (221)
Q Consensus 16 i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------------~~~i~~~D~~g~~~~~~- 77 (221)
|+++|.||||||||+|++..... ...+.+++|.......+ ... ...+.++|+||...-..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~--~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC--ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 58999999999999999665443 33444555544443322 211 12589999999643211
Q ss_pred ---ccccc---cccccEEEEEEECC
Q 027607 78 ---LRDGY---YIHGQCAIIMFDVT 96 (221)
Q Consensus 78 ---~~~~~---~~~~d~~i~v~d~~ 96 (221)
+...+ ++.+|+++.|+|+.
T Consensus 79 ~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 11222 56899999999974
No 333
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.95 E-value=1.7e-09 Score=76.90 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLP 213 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (221)
|-+.....|++++...|.+.+.|||+.. +|+....++...+.++...+.+
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGN-----LDp~~s~~im~lfeeinr~GtT 189 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGN-----LDPDLSWEIMRLFEEINRLGTT 189 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCC-----CChHHHHHHHHHHHHHhhcCcE
Confidence 5566668899999999999999999999 9999999999999999887764
No 334
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.94 E-value=2.4e-08 Score=74.99 Aligned_cols=48 Identities=27% Similarity=0.284 Sum_probs=41.8
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-.|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++..
T Consensus 132 LSgG~~qrl~la~al~~~p~lllLDEPt~~-----LD~~~~~~~~~~l~~~~~ 179 (220)
T cd03293 132 LSGGMRQRVALARALAVDPDVLLLDEPFSA-----LDALTREQLQEELLDIWR 179 (220)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCCCCC-----CCHHHHHHHHHHHHHHHH
Confidence 345556667899999999999999999999 999999999999998753
No 335
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.94 E-value=1.4e-08 Score=73.28 Aligned_cols=47 Identities=11% Similarity=0.177 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+-+.....+++++..+|++.++|||..+ +|........+.+++++.+
T Consensus 74 gGq~qrv~laral~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~~~~~ 120 (177)
T cd03222 74 GGELQRVAIAAALLRNATFYLFDEPSAY-----LDIEQRLNAARAIRRLSEE 120 (177)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHHc
Confidence 4455667899999999999999999999 9999999999999987654
No 336
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.94 E-value=4.9e-09 Score=82.21 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
|-+....++++++..+|++.++|||.+. +|.+-......+++++.++
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSn-----LDa~lR~~mr~ei~~lh~~ 182 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSN-----LDAKLRVLMRSEIKKLHER 182 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhH-----hhHHHHHHHHHHHHHHHHh
Confidence 4455557899999999999999999999 9998888888888877654
No 337
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.94 E-value=2.2e-08 Score=78.83 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=42.7
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.+-+.....|++++..+|++.++|||+++ +|+.....+.+.++++.+++
T Consensus 140 S~G~~qrl~la~aL~~~P~lllLDEPt~g-----LD~~~~~~l~~~l~~l~~~g 188 (306)
T PRK13537 140 SGGMKRRLTLARALVNDPDVLVLDEPTTG-----LDPQARHLMWERLRSLLARG 188 (306)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHhCC
Confidence 34455557799999999999999999999 99999999999999987654
No 338
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.93 E-value=2.2e-08 Score=73.54 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=45.8
Q ss_pred cCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 155 KSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 155 ~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-+-+|-+.....|+++++.+|++.++|||+.+ +.|.-.+++.+.+++++.+
T Consensus 135 G~LSGGEQQMLAiaRALm~~PklLLLDEPs~G-----LaP~iv~~I~~~i~~l~~~ 185 (237)
T COG0410 135 GTLSGGEQQMLAIARALMSRPKLLLLDEPSEG-----LAPKIVEEIFEAIKELRKE 185 (237)
T ss_pred cCCChHHHHHHHHHHHHhcCCCEEEecCCccC-----cCHHHHHHHHHHHHHHHHc
Confidence 34457788888999999999999999999999 9999999999999999965
No 339
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.93 E-value=4.1e-09 Score=75.76 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCC
Q 027607 162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL 212 (221)
Q Consensus 162 ~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (221)
+....|+++++++|.++++|||+++ +|....+.+.+.+.++.+++.
T Consensus 139 kqkV~iARAlvh~P~i~vlDEP~sG-----LDi~~~r~~~dfi~q~k~egr 184 (245)
T COG4555 139 KQKVAIARALVHDPSILVLDEPTSG-----LDIRTRRKFHDFIKQLKNEGR 184 (245)
T ss_pred HHHHHHHHHHhcCCCeEEEcCCCCC-----ccHHHHHHHHHHHHHhhcCCc
Confidence 3356899999999999999999999 999999999999999998653
No 340
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.92 E-value=2.4e-08 Score=79.62 Aligned_cols=49 Identities=27% Similarity=0.273 Sum_probs=43.0
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.+-+.....|++++..+|++.++|||+++ +|+.....+.+.++++.+++
T Consensus 174 S~G~kqrv~lA~aL~~~P~lLiLDEPt~g-----LD~~~r~~l~~~l~~l~~~g 222 (340)
T PRK13536 174 SGGMKRRLTLARALINDPQLLILDEPTTG-----LDPHARHLIWERLRSLLARG 222 (340)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHHhCC
Confidence 34455567899999999999999999999 99999999999999987654
No 341
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.92 E-value=7.7e-08 Score=75.20 Aligned_cols=137 Identities=17% Similarity=0.309 Sum_probs=80.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCc----------ccCCcceeeeeeEEEecCcEEEEEEEecCCcccc---ccc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---GGL 78 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~---~~~ 78 (221)
-.++|.++|++|+|||||+|.|+....... ..++.........+.-++..+++.++||||.-+. ...
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 459999999999999999999887633222 1223333344444444566778999999993221 111
Q ss_pred ccc-----------c------------cc--cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc
Q 027607 79 RDG-----------Y------------YI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (221)
Q Consensus 79 ~~~-----------~------------~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 133 (221)
|.. | +. .++++++.+..+.- .+..++ +..+...+..+.+|.|+.|+|.--..
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~D--Ie~Mk~ls~~vNlIPVI~KaD~lT~~ 178 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLD--IEAMKRLSKRVNLIPVIAKADTLTDD 178 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHH--HHHHHHHhcccCeeeeeeccccCCHH
Confidence 111 1 11 35777777776532 222222 23333444578899999999964322
Q ss_pred ----ccHHHHHHHhhcCCeEEE
Q 027607 134 ----VKAKQVTFHRKKNLQYYE 151 (221)
Q Consensus 134 ----~~~~~~~~~~~~~~~~~~ 151 (221)
......+.....++++|.
T Consensus 179 El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 179 ELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHHHHHHHHHhCCceeC
Confidence 222333455566777664
No 342
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.92 E-value=4.1e-09 Score=75.75 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=43.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCC
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g 71 (221)
.++++++|.+|+|||||+|++.... .....+.+|+|.....+.++. .+.++||||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~-~~~~~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSR-ACNVGATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcc-cceecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 4899999999999999999966543 345577788888776666543 478999999
No 343
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.92 E-value=2.6e-09 Score=80.31 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=45.0
Q ss_pred ecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 152 ~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
...++|.. +....|+..+..+|++.++|||+++ +|+...+.+.+.++++..+.
T Consensus 136 p~~LSGGq--kqRvaIA~vLa~~P~iliLDEPta~-----LD~~~~~~l~~~l~~L~~~~ 188 (235)
T COG1122 136 PFNLSGGQ--KQRVAIAGVLAMGPEILLLDEPTAG-----LDPKGRRELLELLKKLKEEG 188 (235)
T ss_pred ccccCCcc--eeeHHhhHHHHcCCCEEEEcCCCCC-----CCHHHHHHHHHHHHHHHhcC
Confidence 44444444 4457799999999999999999999 99999999999999998873
No 344
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.91 E-value=6e-09 Score=77.04 Aligned_cols=48 Identities=23% Similarity=0.307 Sum_probs=43.2
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.|-+...-.|++++..+|++.++|||+++ +|..-+.++.+.+.++.++
T Consensus 143 SGGQ~QRiaIARAL~~~PklLIlDEptSa-----LD~siQa~IlnlL~~l~~~ 190 (252)
T COG1124 143 SGGQRQRIAIARALIPEPKLLILDEPTSA-----LDVSVQAQILNLLLELKKE 190 (252)
T ss_pred ChhHHHHHHHHHHhccCCCEEEecCchhh-----hcHHHHHHHHHHHHHHHHh
Confidence 35566668899999999999999999999 9999999999999988776
No 345
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.91 E-value=4.1e-09 Score=78.38 Aligned_cols=48 Identities=23% Similarity=0.267 Sum_probs=42.0
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+|-.+....|++++...|++.++|||..+ +|........+.+.++.++
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgA-----LDalTR~~lq~~l~~lw~~ 179 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGA-----LDALTREELQDELLRLWEE 179 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcch-----hhHHHHHHHHHHHHHHHHh
Confidence 46677778999999999999999999999 9999988888888877665
No 346
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.91 E-value=5.6e-09 Score=73.81 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLP 213 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (221)
|-+.....|++++...|.+.+.|||+++ +|++-..+..+.++.+++++.+
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSA-----LDPElVgEVLkv~~~LAeEgrT 204 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSA-----LDPELVGEVLKVMQDLAEEGRT 204 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCccc-----CCHHHHHHHHHHHHHHHHhCCe
Confidence 4556668899999999999999999999 9999999999999999998753
No 347
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.90 E-value=2.6e-09 Score=80.18 Aligned_cols=153 Identities=13% Similarity=0.124 Sum_probs=92.7
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccC-CcceeeeeeEEEecCcEEEEEEEecCCc----------cccccc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-TIGVEVHPLDFFTNCGKIRFYCWDTAGQ----------EKFGGL 78 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~D~~g~----------~~~~~~ 78 (221)
..++..++++|-+|+|||||+|.++..+....... +.|.+.....+.++ -.+.+.|.||- .++..+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHh
Confidence 35678999999999999999999776555333232 55544444333333 35778899991 223334
Q ss_pred cccccccc---cEEEEEEECCChhhhccHHHH-HHHHHhhcCCCCEEEEEeCCCcCCccc------cHHHH-------HH
Q 027607 79 RDGYYIHG---QCAIIMFDVTARLTYKNVPTW-HRDLCRVCENIPIVLCGNKVDVKNRQV------KAKQV-------TF 141 (221)
Q Consensus 79 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~------~~~~~-------~~ 141 (221)
...|+.+- -.+++++|++.+ ++..+.. +..+.++ ++|..+|+||+|...... ..... ..
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhhc--CCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 44554433 345566666544 3333322 2223332 899999999999643221 11111 11
Q ss_pred HhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607 142 HRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 142 ~~~~~~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
+.....+++.+|+.++.|++.++..+++
T Consensus 286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ceeccCCceeeecccccCceeeeeehhh
Confidence 2222345677999999999998877766
No 348
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.90 E-value=2.2e-08 Score=78.77 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=42.7
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++++++
T Consensus 126 SgG~~qrv~la~al~~~p~lllLDEPt~g-----LD~~~~~~l~~~l~~~~~~g 174 (302)
T TIGR01188 126 SGGMRRRLDIAASLIHQPDVLFLDEPTTG-----LDPRTRRAIWDYIRALKEEG 174 (302)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHhCC
Confidence 34455567799999999999999999999 99999999999999987654
No 349
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.90 E-value=5.5e-09 Score=79.81 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=43.2
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+|-++....|+|++..+|++.+.||++++ +||+..+.+.+.+++..++
T Consensus 143 SGGQKQRVaIARALa~~P~iLL~DEaTSA-----LDP~TT~sIL~LL~~In~~ 190 (339)
T COG1135 143 SGGQKQRVAIARALANNPKILLCDEATSA-----LDPETTQSILELLKDINRE 190 (339)
T ss_pred CcchhhHHHHHHHHhcCCCEEEecCcccc-----CChHHHHHHHHHHHHHHHH
Confidence 35566678899999999999999999999 9999999999999988765
No 350
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.89 E-value=5.5e-10 Score=80.06 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=46.2
Q ss_pred cCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCC
Q 027607 155 KSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL 212 (221)
Q Consensus 155 ~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (221)
.+-+|-+.-...|++++..+|.+.++|||.++ .||-+..++...++.++..++
T Consensus 138 ~sLSGGERRR~EIARaLa~~P~fiLLDEPFAG-----VDPiaV~dIq~iI~~L~~rgi 190 (243)
T COG1137 138 YSLSGGERRRVEIARALAANPKFILLDEPFAG-----VDPIAVIDIQRIIKHLKDRGI 190 (243)
T ss_pred cccccchHHHHHHHHHHhcCCCEEEecCCccC-----CCchhHHHHHHHHHHHHhCCc
Confidence 33345566668899999999999999999999 999999999999999988764
No 351
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=4.3e-08 Score=72.24 Aligned_cols=141 Identities=18% Similarity=0.295 Sum_probs=76.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCc-cc-----CCc-ceeeeeeEEEecCc--EEEEEEEecCCcccc---cccc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK-YE-----PTI-GVEVHPLDFFTNCG--KIRFYCWDTAGQEKF---GGLR 79 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~-~~-----~~~-~~~~~~~~~~~~~~--~~~i~~~D~~g~~~~---~~~~ 79 (221)
-.|+|.|+|.+|.|||||+|.+...+.... .. +.. .+........+..+ ...+.++||||.-+. ..+|
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 469999999999999999999776444221 11 111 12233333333333 457889999994221 1222
Q ss_pred cc-----------c------------cc--cccEEEEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCC--
Q 027607 80 DG-----------Y------------YI--HGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-- 131 (221)
Q Consensus 80 ~~-----------~------------~~--~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~-- 131 (221)
.. | +. .++++++.+..+- .++..++ .+++.+. .-+.++.|+-|+|..-
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt---~vvNvvPVIakaDtlTle 200 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLT---EVVNVVPVIAKADTLTLE 200 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHh---hhheeeeeEeecccccHH
Confidence 11 1 21 2566777766653 2333222 2223232 3567788889999532
Q ss_pred -c-cccHHHHHHHhhcCCeEEEecccC
Q 027607 132 -R-QVKAKQVTFHRKKNLQYYEISAKS 156 (221)
Q Consensus 132 -~-~~~~~~~~~~~~~~~~~~~~s~~~ 156 (221)
+ ...+...+....+++.+++-.+..
T Consensus 201 Er~~FkqrI~~el~~~~i~vYPq~~fd 227 (336)
T KOG1547|consen 201 ERSAFKQRIRKELEKHGIDVYPQDSFD 227 (336)
T ss_pred HHHHHHHHHHHHHHhcCcccccccccc
Confidence 1 122223344455677766655544
No 352
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.88 E-value=5e-08 Score=72.47 Aligned_cols=49 Identities=20% Similarity=0.216 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.+-+.....|++++..+|++.++|||+.+ +|+.....+.+.++++.+++
T Consensus 136 S~G~~qr~~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~ 184 (206)
T TIGR03608 136 SGGEQQRVALARAILKDPPLILADEPTGS-----LDPKNRDEVLDLLLELNDEG 184 (206)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcCC-----CCHHHHHHHHHHHHHHHhcC
Confidence 34455667799999999999999999999 99999999999999886543
No 353
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.88 E-value=7.4e-08 Score=71.13 Aligned_cols=49 Identities=22% Similarity=0.165 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....|++++..+|++.++|||+++ +|......+.+.+.+++.++
T Consensus 129 S~G~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~ 177 (198)
T TIGR01189 129 SAGQQRRLALARLWLSRAPLWILDEPTTA-----LDKAGVALLAGLLRAHLARG 177 (198)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHhCC
Confidence 34455567799999999999999999999 99999999999999876554
No 354
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.87 E-value=3.4e-09 Score=73.55 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLP 213 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (221)
|-+.....|+++++..|.+.+.|||+.. +|++-..++.+.+++++..+.+
T Consensus 144 ggqqqrvaiaralmmkpqvllfdeptaa-----ldpeitaqvv~iikel~~tgit 193 (242)
T COG4161 144 GGQQQRVAIARALMMEPQVLLFDEPTAA-----LDPEITAQIVSIIKELAETGIT 193 (242)
T ss_pred cchhhhHHHHHHHhcCCcEEeecCcccc-----cCHHHHHHHHHHHHHHHhcCce
Confidence 4455567899999999999999999999 9999999999999999988764
No 355
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.87 E-value=4.1e-08 Score=73.57 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=41.8
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.|-+.....|+++++.+|++.++|||+++ +|+.....+.+.+++++.
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~-----LD~~~~~~l~~~l~~~~~ 188 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGN-----LDSETGKEVMELLRELNK 188 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 34556667799999999999999999999 999999999999998865
No 356
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.87 E-value=6.7e-08 Score=73.16 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=42.5
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....|++++..+|++.++|||+.+ +|......+.+.++++.+++
T Consensus 135 S~G~~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~~~ 183 (232)
T cd03218 135 SGGERRRVEIARALATNPKFLLLDEPFAG-----VDPIAVQDIQKIIKILKDRG 183 (232)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCccc-----CCHHHHHHHHHHHHHHHHCC
Confidence 44556667899999999999999999999 99999999999999886544
No 357
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1.8e-09 Score=88.73 Aligned_cols=201 Identities=17% Similarity=0.117 Sum_probs=122.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCC----------------cccCCcceeeeeeEEEecCcEEEEEEEecCCccc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEK----------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~ 74 (221)
.+.-+|+++-.-.+||||+..+++.-.... ......|++...-...+.+.+.++.++||||+-+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 355689999999999999999977521110 0111223444444445667788999999999998
Q ss_pred cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCe--EEEe
Q 027607 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ--YYEI 152 (221)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~ 152 (221)
+.--....++-.|++++|+++...---+....|.+.-+. ++|.+.++||+|........-......+.+.+ ++.+
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry---~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqi 193 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRY---NVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQI 193 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhc---CCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEc
Confidence 888888889999999999999876555556666654433 89999999999987665544444444444432 2322
Q ss_pred cccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCCCCCCccc
Q 027607 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDAF 220 (221)
Q Consensus 153 s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (221)
. .|.+..|..+...+.. ..++.-.+-... -....-++........-++..-+.+++.||++.
T Consensus 194 P----ig~e~~f~GvvDlv~~-kai~~~g~~g~~-i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~ 255 (721)
T KOG0465|consen 194 P----IGSESNFKGVVDLVNG-KAIYWDGENGEI-VRKDEIPEDLEELAEEKRQALIETLADVDETLA 255 (721)
T ss_pred c----ccccccchhHHhhhhc-eEEEEcCCCCce-eEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 2 2333355555553322 222221111111 111234455555555666655566666666543
No 358
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.87 E-value=4e-08 Score=73.57 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=43.8
Q ss_pred CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
+-.|-+.....|++++..+|++.++|||+++ +|......+.+.++++..++
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~ 188 (216)
T TIGR00960 138 QLSGGEQQRVAIARAIVHKPPLLLADEPTGN-----LDPELSRDIMRLFEEFNRRG 188 (216)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHHCC
Confidence 3345566667899999999999999999999 99999999999999886543
No 359
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.87 E-value=6.1e-08 Score=71.90 Aligned_cols=49 Identities=29% Similarity=0.198 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....|++++..+|++.++|||+.+ +|........+.+++++.++
T Consensus 131 S~G~~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~ 179 (204)
T PRK13538 131 SAGQQRRVALARLWLTRAPLWILDEPFTA-----IDKQGVARLEALLAQHAEQG 179 (204)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHHCC
Confidence 34455667799999999999999999999 99999999999999876543
No 360
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.87 E-value=4.2e-08 Score=73.56 Aligned_cols=49 Identities=16% Similarity=0.225 Sum_probs=42.8
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....|++++..+|++.++|||+.+ +|+.......+.++++.+++
T Consensus 138 S~G~~qrv~laral~~~p~illlDEPt~~-----LD~~~~~~l~~~l~~~~~~~ 186 (218)
T cd03266 138 STGMRQKVAIARALVHDPPVLLLDEPTTG-----LDVMATRALREFIRQLRALG 186 (218)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcC-----CCHHHHHHHHHHHHHHHHCC
Confidence 34466667899999999999999999999 99999999999999886554
No 361
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.86 E-value=5.5e-09 Score=90.01 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=42.7
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+|-++..-.|+|++..+|++.++|||+++ +|...++.+.+.+.+....
T Consensus 611 SGGQrQrlalARaLl~~P~ILlLDEaTSa-----LD~~sE~~I~~~L~~~~~~ 658 (709)
T COG2274 611 SGGQRQRLALARALLSKPKILLLDEATSA-----LDPETEAIILQNLLQILQG 658 (709)
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCcccc-----cCHhHHHHHHHHHHHHhcC
Confidence 35577778899999999999999999999 9999999999999987743
No 362
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.86 E-value=5.5e-08 Score=76.54 Aligned_cols=49 Identities=27% Similarity=0.273 Sum_probs=43.1
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++++++
T Consensus 137 SgG~~qrv~la~al~~~p~lllLDEPt~g-----LD~~~~~~l~~~l~~~~~~g 185 (303)
T TIGR01288 137 SGGMKRRLTLARALINDPQLLILDEPTTG-----LDPHARHLIWERLRSLLARG 185 (303)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHhCC
Confidence 34556667799999999999999999999 99999999999999987654
No 363
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.86 E-value=5.8e-09 Score=82.23 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=43.8
Q ss_pred EEecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 150 YEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 150 ~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
...+.++ |-+.....|++++...|++.++|||.++ +|..-..+...+++++..+
T Consensus 132 R~p~qLS--GGQqQRVALARAL~~~P~vLLLDEPlSa-----LD~kLR~~mr~Elk~lq~~ 185 (352)
T COG3842 132 RKPHQLS--GGQQQRVALARALVPEPKVLLLDEPLSA-----LDAKLREQMRKELKELQRE 185 (352)
T ss_pred hChhhhC--hHHHHHHHHHHHhhcCcchhhhcCcccc-----hhHHHHHHHHHHHHHHHHh
Confidence 3345554 4455557899999999999999999999 9999888888888877765
No 364
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.86 E-value=5.2e-09 Score=76.75 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=43.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccC-------CcccCCcceeeeeeEEEecCcEEEEEEEecCC
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFE-------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g 71 (221)
..+++++|.+|+|||||+|+++..... ......+|+|.....+.+.. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 468999999999999999998764421 24456668888887777654 478999999
No 365
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.86 E-value=1e-08 Score=75.15 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=42.5
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....|+++++.+|++.++|||+.+ +|+.......+.++++.+++
T Consensus 129 S~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~~~ 177 (190)
T TIGR01166 129 SGGEKKRVAIAGAVAMRPDVLLLDEPTAG-----LDPAGREQMLAILRRLRAEG 177 (190)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHcC
Confidence 34455667799999999999999999999 99999999999999886554
No 366
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.85 E-value=7.3e-08 Score=71.32 Aligned_cols=49 Identities=20% Similarity=0.236 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....+++++..+|++.++|||+.+ +|+.....+.+.++++..++
T Consensus 127 S~G~~qrl~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~g 175 (201)
T cd03231 127 SAGQQRRVALARLLLSGRPLWILDEPTTA-----LDKAGVARFAEAMAGHCARG 175 (201)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHhCC
Confidence 34455667799999999999999999999 99999999999998876543
No 367
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.85 E-value=8.1e-08 Score=72.89 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....|++++..+|++.++|||+.+ +|......+.+.++++.+++
T Consensus 145 SgG~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~ 193 (236)
T cd03219 145 SYGQQRRLEIARALATDPKLLLLDEPAAG-----LNPEETEELAELIRELRERG 193 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHCC
Confidence 34455567799999999999999999999 99999999999999886543
No 368
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.85 E-value=9e-08 Score=71.06 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=42.7
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....|++++..+|++.++|||+.+ +|+.....+.+.+++++.++
T Consensus 128 S~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~ 176 (205)
T cd03226 128 SGGQKQRLAIAAALLSGKDLLIFDEPTSG-----LDYKNMERVGELIRELAAQG 176 (205)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHHCC
Confidence 45556667899999999999999999999 99999999999999886554
No 369
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.85 E-value=1.3e-08 Score=82.91 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=51.5
Q ss_pred cEEEEEEEecCCccccccccccccccccEEEEEEECCChh-------hhccHHHHHHHHHhh-----cCCCCEEEEEeCC
Q 027607 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-------TYKNVPTWHRDLCRV-----CENIPIVLCGNKV 127 (221)
Q Consensus 60 ~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~-----~~~~p~ivv~nK~ 127 (221)
+...+.++|++|+...+..|.+++.++++++||+++++-. ....+..-+..+... ..+.|++|++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 5578899999999999999999999999999999987422 112233333333332 2589999999999
Q ss_pred Cc
Q 027607 128 DV 129 (221)
Q Consensus 128 D~ 129 (221)
|+
T Consensus 314 D~ 315 (389)
T PF00503_consen 314 DL 315 (389)
T ss_dssp HH
T ss_pred HH
Confidence 95
No 370
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.84 E-value=5.9e-08 Score=73.62 Aligned_cols=47 Identities=26% Similarity=0.238 Sum_probs=41.7
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++..
T Consensus 138 SgG~~qrv~ia~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~ 184 (235)
T cd03261 138 SGGMKKRVALARALALDPELLLYDEPTAG-----LDPIASGVIDDLIRSLKK 184 (235)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 45556667799999999999999999999 999999999999998865
No 371
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.84 E-value=1.6e-08 Score=74.84 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=51.1
Q ss_pred cHHHHHHHhhcCCeEEE---ecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 135 KAKQVTFHRKKNLQYYE---ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 135 ~~~~~~~~~~~~~~~~~---~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
..+...|..+..+.... +-.++..+-++ ..+..++.+.|++.++|||.++ +||-.++.+.+.+.++++.+
T Consensus 108 ~~~~~~wLer~~i~~~~~~kIk~LSKGnqQK--IQfisaviHePeLlILDEPFSG-----LDPVN~elLk~~I~~lk~~G 180 (300)
T COG4152 108 QKKLQAWLERLEIVGKKTKKIKELSKGNQQK--IQFISAVIHEPELLILDEPFSG-----LDPVNVELLKDAIFELKEEG 180 (300)
T ss_pred HHHHHHHHHhccccccccchHHHhhhhhhHH--HHHHHHHhcCCCEEEecCCccC-----CChhhHHHHHHHHHHHHhcC
Confidence 33444455554443222 33334344444 4467789999999999999999 99999999999999999887
Q ss_pred CC
Q 027607 212 LP 213 (221)
Q Consensus 212 ~~ 213 (221)
.+
T Consensus 181 at 182 (300)
T COG4152 181 AT 182 (300)
T ss_pred CE
Confidence 54
No 372
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.84 E-value=1.8e-08 Score=73.95 Aligned_cols=107 Identities=16% Similarity=0.129 Sum_probs=74.5
Q ss_pred cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHH-HHHHH-----hhcCC-
Q 027607 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFH-----RKKNL- 147 (221)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~-----~~~~~- 147 (221)
+..++..++..+|++++|+|+++...- |...+.....+.|+++|+||+|+........ ...+. ...+.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLK 98 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCC
Confidence 466677789999999999999875421 2222222234789999999999864333222 22222 22222
Q ss_pred --eEEEecccCCCChHHHHHHHHHHHhCCCCCccccCCCCC
Q 027607 148 --QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALA 186 (221)
Q Consensus 148 --~~~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~ 186 (221)
.++.+|+++|.|+++++..|.+.+.......++-.|..+
T Consensus 99 ~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~~~~G~~nvG 139 (190)
T cd01855 99 PKDVILISAKKGWGVEELINAIKKLAKKGGDVYVVGATNVG 139 (190)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhhcCCcEEEEcCCCCC
Confidence 589999999999999999999988766667777776655
No 373
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.84 E-value=5.6e-08 Score=72.43 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=42.0
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....|++++..+|++.++|||+.+ +|+.....+.+.++++..++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~-----LD~~~~~~~~~~l~~~~~~~ 178 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSG-----LDPVNVELLKDVIRELARAG 178 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHHCC
Confidence 34455567799999999999999999999 99999999999999876543
No 374
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.84 E-value=5.9e-08 Score=72.52 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=43.1
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
-.|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++..++
T Consensus 137 LS~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~~~ 186 (214)
T cd03292 137 LSGGEQQRVAIARAIVNSPTILIADEPTGN-----LDPDTTWEIMNLLKKINKAG 186 (214)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHHcC
Confidence 345566667899999999999999999999 99999999999999886543
No 375
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.84 E-value=6.1e-08 Score=72.38 Aligned_cols=47 Identities=26% Similarity=0.350 Sum_probs=41.3
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.|-+.....|++++..+|++.++|||+.+ +|+.....+.+.+++++.
T Consensus 132 SgG~~qrl~la~al~~~p~~lllDEPt~~-----LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03259 132 SGGQQQRVALARALAREPSLLLLDEPLSA-----LDAKLREELREELKELQR 178 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 34455567799999999999999999999 999999999999998765
No 376
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.83 E-value=7.7e-08 Score=71.90 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=43.2
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
-.|-+.....|++++..+|++.++|||+.+ +|+.....+.+.++++.+++
T Consensus 138 LS~G~~qrl~la~al~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~~~ 187 (214)
T TIGR02673 138 LSGGEQQRVAIARAIVNSPPLLLADEPTGN-----LDPDLSERILDLLKRLNKRG 187 (214)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHcC
Confidence 345566667899999999999999999999 99999999999999876543
No 377
>PRK12289 GTPase RsgA; Reviewed
Probab=98.83 E-value=2.2e-08 Score=79.78 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=67.1
Q ss_pred ccccccccccccEEEEEEECCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecc
Q 027607 76 GGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISA 154 (221)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~ 154 (221)
..+.+..+.++|.+++|+|+.++. ....+..|+..... .+.|+++|+||+|+................++.++.+|+
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA 157 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISV 157 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEc
Confidence 344455688999999999998765 33345666655432 489999999999986433222333444567889999999
Q ss_pred cCCCChHHHHHHHHH
Q 027607 155 KSNYNFEKPFLYLAR 169 (221)
Q Consensus 155 ~~~~gv~~~~~~l~~ 169 (221)
.++.|+++++..|..
T Consensus 158 ~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 158 ETGIGLEALLEQLRN 172 (352)
T ss_pred CCCCCHHHHhhhhcc
Confidence 999999998887764
No 378
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=2.4e-08 Score=75.67 Aligned_cols=143 Identities=18% Similarity=0.133 Sum_probs=91.8
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCcc--------------CCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~ 75 (221)
..+.++|+.+|.-+-|||||..++..-.. ..+.....|.+.....+.+...+..+...|+||+.+|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 46789999999999999999988553100 0112234466777766777777788899999999877
Q ss_pred ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCccc-----cHHHHHHHhhcCC--
Q 027607 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKKNL-- 147 (221)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-----~~~~~~~~~~~~~-- 147 (221)
-...-.-..+.|+.|+|+.+++..--+... ...+.... ..| +++++||+|+.+... ..+...+...+++
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrE--HiLlarqv-Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~g 165 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTRE--HILLARQV-GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPG 165 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchh--hhhhhhhc-CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 544444456789999999999875433321 11222222 554 567789999976322 2233344445443
Q ss_pred ---eEEEeccc
Q 027607 148 ---QYYEISAK 155 (221)
Q Consensus 148 ---~~~~~s~~ 155 (221)
+++.-|++
T Consensus 166 d~~Pii~gSal 176 (394)
T COG0050 166 DDTPIIRGSAL 176 (394)
T ss_pred CCcceeechhh
Confidence 45666654
No 379
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.83 E-value=7.4e-08 Score=71.93 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....|++++..+|++.++|||+.+ +|+.....+.+.+++++.++
T Consensus 137 S~G~~qrv~la~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~~~ 185 (213)
T cd03262 137 SGGQQQRVAIARALAMNPKVMLFDEPTSA-----LDPELVGEVLDVMKDLAEEG 185 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHHcC
Confidence 34455567799999999999999999999 99999999999999887543
No 380
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=5.7e-09 Score=82.53 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=110.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc--CccCC--------------cccCCcceeeeeeEEEecCcEEEEEEEecCCccc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK--------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~ 74 (221)
.+--+|+|+..-.+||||...+++. |.... ......|.+...-.+.++++++++.++||||+-+
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 3456899999999999999999764 11100 1122346777778889999999999999999999
Q ss_pred cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeE--EEe
Q 027607 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY--YEI 152 (221)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~ 152 (221)
++-.....++-.|+++.|||++..-.-+.+..|.+.-. -+.|.+.++||+|...............+.+.+. ..+
T Consensus 115 f~leverclrvldgavav~dasagve~qtltvwrqadk---~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~l 191 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADK---FKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQL 191 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccc---cCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEe
Confidence 98888888999999999999998877777777865422 2789999999999866554444444445555543 223
Q ss_pred cccCCCChHHHHHHHH
Q 027607 153 SAKSNYNFEKPFLYLA 168 (221)
Q Consensus 153 s~~~~~gv~~~~~~l~ 168 (221)
..-...|..+-|..+.
T Consensus 192 pi~eak~fnkg~ldil 207 (753)
T KOG0464|consen 192 PIGEAKGFNKGFLDIL 207 (753)
T ss_pred cccccccccchHHHHH
Confidence 3334455544444443
No 381
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.82 E-value=1.5e-08 Score=75.51 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=42.6
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....|++++..+|++.++|||+++ +|+.....+.+.+++++.++
T Consensus 136 SgG~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~~~ 184 (211)
T cd03225 136 SGGQKQRVAIAGVLAMDPDILLLDEPTAG-----LDPAGRRELLELLKKLKAEG 184 (211)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHcC
Confidence 34455567799999999999999999999 99999999999999887643
No 382
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.82 E-value=1.3e-08 Score=78.04 Aligned_cols=158 Identities=16% Similarity=0.079 Sum_probs=90.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc--cccccc------
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--GGLRDG------ 81 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~--~~~~~~------ 81 (221)
..+...|+|+|.+|+|||||+++|......+.-.-....+...+...... +..+-+.||-|.-.- ..+...
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-g~~vlltDTvGFisdLP~~LvaAF~ATLe 253 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-GNFVLLTDTVGFISDLPIQLVAAFQATLE 253 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-CcEEEEeechhhhhhCcHHHHHHHHHHHH
Confidence 44556899999999999999999663332221111111111122223332 345677899984211 111111
Q ss_pred ccccccEEEEEEECCChhhhccHHHHHHHHHhhc-CCCCE----EEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccC
Q 027607 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPI----VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 156 (221)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~----ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 156 (221)
-+..+|.++-|.|++++..-+.....+..+.+.. +..|. +=|-||.|........+ . ...+.+|+++
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E------~--n~~v~isalt 325 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE------K--NLDVGISALT 325 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc------c--CCcccccccc
Confidence 2567999999999999865444333333333321 12232 34556777544322221 1 1156799999
Q ss_pred CCChHHHHHHHHHHHhCCCC
Q 027607 157 NYNFEKPFLYLARKLAGDPN 176 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~ 176 (221)
|.|++++...+-..+.....
T Consensus 326 gdgl~el~~a~~~kv~~~t~ 345 (410)
T KOG0410|consen 326 GDGLEELLKAEETKVASETT 345 (410)
T ss_pred CccHHHHHHHHHHHhhhhhe
Confidence 99999999888877655443
No 383
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.82 E-value=1.8e-08 Score=71.56 Aligned_cols=93 Identities=12% Similarity=0.053 Sum_probs=63.3
Q ss_pred ccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCC
Q 027607 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN 157 (221)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (221)
+..++++++|++++|+|++++...... .+...+.. .+.|+++|+||+|+.+.........+....+.+++.+|++++
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~ 81 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKER 81 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEcccc
Confidence 445667789999999999876543331 22222221 378999999999985432222211233345667899999999
Q ss_pred CChHHHHHHHHHHHhC
Q 027607 158 YNFEKPFLYLARKLAG 173 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~ 173 (221)
.|+++++..|.+.+..
T Consensus 82 ~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 82 LGTKILRRTIKELAKI 97 (156)
T ss_pred ccHHHHHHHHHHHHhh
Confidence 9999999999887643
No 384
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.82 E-value=9.4e-08 Score=71.11 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
|-+.....|++++..+|++.++|||+.+ +|+.....+.+.++++..++
T Consensus 129 ~G~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~ 176 (208)
T cd03268 129 LGMKQRLGIALALLGNPDLLILDEPTNG-----LDPDGIKELRELILSLRDQG 176 (208)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCccc-----CCHHHHHHHHHHHHHHHHCC
Confidence 4455567799999999999999999999 99999999999999876543
No 385
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.82 E-value=6e-08 Score=76.28 Aligned_cols=52 Identities=17% Similarity=0.115 Sum_probs=44.6
Q ss_pred cCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 155 KSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 155 ~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
..-+|-+.....|++++...|++.++|||+.+ +|+.....+.+.+++++.++
T Consensus 164 ~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~-----LD~~~~~~l~~~l~~l~~~g 215 (305)
T PRK13651 164 FELSGGQKRRVALAGILAMEPDFLVFDEPTAG-----LDPQGVKEILEIFDNLNKQG 215 (305)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHHCC
Confidence 33445566778899999999999999999999 99999999999999887554
No 386
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.82 E-value=1.6e-08 Score=72.93 Aligned_cols=58 Identities=22% Similarity=0.212 Sum_probs=44.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~ 72 (221)
...++++++|.+|+|||||+|++....+. ......+++.....+.+. ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 34589999999999999999998766553 445566777776666554 34789999994
No 387
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.81 E-value=1.2e-07 Score=72.87 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=42.7
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....|++++..+|++.++|||+.+ +|+...+.+.+.++++++++
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~l~~~g 202 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSA-----LDPELVGEVLRIMQQLAEEG 202 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhcC
Confidence 44556667799999999999999999999 99999999999999887654
No 388
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.81 E-value=1.4e-07 Score=71.61 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=41.5
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.|-+.....|+++++.+|++.++|||..+ +|+.....+.+.++++++
T Consensus 134 S~G~~qrl~laral~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~ 180 (236)
T TIGR03864 134 NGGHRRRVEIARALLHRPALLLLDEPTVG-----LDPASRAAIVAHVRALCR 180 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccC-----CCHHHHHHHHHHHHHHHH
Confidence 44456667799999999999999999999 999999999999998864
No 389
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=8.6e-08 Score=71.50 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.|-+.....|++++..+|++.++|||+.+ +|+.....+.+.++++.++
T Consensus 132 S~G~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~ 179 (211)
T cd03264 132 SGGMRRRVGIAQALVGDPSILIVDEPTAG-----LDPEERIRFRNLLSELGED 179 (211)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHhCC
Confidence 44556667899999999999999999999 9999999999999988653
No 390
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.81 E-value=1.1e-07 Score=71.27 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=41.3
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.+-+.....|+++++..|++.++|||..+ +|+.......+.++++..
T Consensus 135 S~G~~qrv~la~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~ 181 (220)
T cd03263 135 SGGMKRKLSLAIALIGGPSVLLLDEPTSG-----LDPASRRAIWDLILEVRK 181 (220)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCCC-----CCHHHHHHHHHHHHHHhc
Confidence 34455667799999999999999999999 999999999999998765
No 391
>PRK10908 cell division protein FtsE; Provisional
Probab=98.81 E-value=1.1e-07 Score=71.51 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=42.1
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.|-+.....|++++...|++.++|||+.+ +|+.....+.+.++++..+
T Consensus 139 S~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~ 186 (222)
T PRK10908 139 SGGEQQRVGIARAVVNKPAVLLADEPTGN-----LDDALSEGILRLFEEFNRV 186 (222)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHHC
Confidence 35566667899999999999999999999 9999999999999988654
No 392
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=1.3e-07 Score=68.37 Aligned_cols=48 Identities=23% Similarity=0.259 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
+-+.....|+++++.+|++.++|||..+ +|........+.++++.+++
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~-----LD~~~~~~l~~~l~~~~~~g 145 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSG-----LDPESRREFWELLRELKKEG 145 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHHCC
Confidence 4455567899999999999999999999 99999999999999987653
No 393
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.80 E-value=2.4e-08 Score=77.78 Aligned_cols=88 Identities=11% Similarity=0.073 Sum_probs=67.2
Q ss_pred ccccccccEEEEEEECCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCC
Q 027607 80 DGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY 158 (221)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (221)
...+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+..............+.+++.+|++++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~ 150 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA--AGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGE 150 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH--cCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence 44588999999999999887 77777778776654 3799999999999965422222233345567899999999999
Q ss_pred ChHHHHHHHHH
Q 027607 159 NFEKPFLYLAR 169 (221)
Q Consensus 159 gv~~~~~~l~~ 169 (221)
|+++++..|..
T Consensus 151 gi~~L~~~L~~ 161 (287)
T cd01854 151 GLDELREYLKG 161 (287)
T ss_pred cHHHHHhhhcc
Confidence 99998877653
No 394
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.80 E-value=1.3e-07 Score=70.66 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=41.6
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.|-+.....|++++..+|++.++|||+.+ +|+.....+.+.+++++.
T Consensus 132 S~G~~qr~~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03301 132 SGGQRQRVALGRAIVREPKVFLMDEPLSN-----LDAKLRVQMRAELKRLQQ 178 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 45556667799999999999999999999 999999999999998865
No 395
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.80 E-value=3.9e-08 Score=71.61 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
+-+.....|++++..+|++.++|||..+ +|+.......+.++++..++
T Consensus 107 ~G~~qrl~la~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~~~ 154 (182)
T cd03215 107 GGNQQKVVLARWLARDPRVLILDEPTRG-----VDVGAKAEIYRLIRELADAG 154 (182)
T ss_pred HHHHHHHHHHHHHccCCCEEEECCCCcC-----CCHHHHHHHHHHHHHHHHCC
Confidence 4455567899999999999999999999 99999999999999886543
No 396
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=1.1e-07 Score=71.36 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
|-+.....|++++..+|++.++|||..+ +|+.......+.++++..+
T Consensus 134 ~G~~qr~~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~ 180 (220)
T cd03265 134 GGMRRRLEIARSLVHRPEVLFLDEPTIG-----LDPQTRAHVWEYIEKLKEE 180 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccC-----CCHHHHHHHHHHHHHHHHh
Confidence 4455567799999999999999999999 9999999999999987654
No 397
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=8.5e-08 Score=72.63 Aligned_cols=49 Identities=22% Similarity=0.201 Sum_probs=42.3
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-.|-+.....|++++...|++.++|||+.+ +|+.....+.+.++++..+
T Consensus 141 LS~G~~qrv~la~al~~~p~lllLDEP~~~-----LD~~~~~~l~~~l~~~~~~ 189 (233)
T cd03258 141 LSGGQKQRVGIARALANNPKVLLCDEATSA-----LDPETTQSILALLRDINRE 189 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCCc-----CCHHHHHHHHHHHHHHHHH
Confidence 344556667899999999999999999999 9999999999999987653
No 398
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=8.7e-08 Score=75.83 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=45.5
Q ss_pred ccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 154 ~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
..+-.|-+.....|++++..+|++.++|||+.+ +|+.....+.+.+.+++.++
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsg-----LD~~~~~~l~~~L~~l~~~g 226 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAG-----LDPKGEHEMMQLILDAKANN 226 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccC-----CCHHHHHHHHHHHHHHHHCC
Confidence 334456677778899999999999999999999 99999999999999886554
No 399
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=7.9e-08 Score=76.85 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+|-+.....|++++..+|++.++|||+++ +|+.....+.+.+++++.+
T Consensus 142 SgGq~qRv~lAraL~~~p~iLlLDEPts~-----LD~~~~~~l~~~L~~l~~~ 189 (343)
T PRK11153 142 SGGQKQRVAIARALASNPKVLLCDEATSA-----LDPATTRSILELLKDINRE 189 (343)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence 45566667899999999999999999999 9999999999999988653
No 400
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.80 E-value=1.4e-07 Score=71.93 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=41.3
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.|-+.....|++++..+|+++++|||+.. +|+.....+.+.+++++.
T Consensus 117 SgGe~qrv~iaraL~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~ 163 (246)
T cd03237 117 SGGELQRVAIAACLSKDADIYLLDEPSAY-----LDVEQRLMASKVIRRFAE 163 (246)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 34455567799999999999999999999 999999999999998864
No 401
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.80 E-value=4.1e-08 Score=70.18 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
+-+.....+++++..+|++.++|||..+ +|....+.+.+.++++.+++
T Consensus 85 ~G~~qrl~laral~~~p~illlDEP~~~-----LD~~~~~~l~~~l~~~~~~~ 132 (163)
T cd03216 85 VGERQMVEIARALARNARLLILDEPTAA-----LTPAEVERLFKVIRRLRAQG 132 (163)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcC-----CCHHHHHHHHHHHHHHHHCC
Confidence 4445557799999999999999999999 99999999999999886543
No 402
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.80 E-value=1.2e-07 Score=72.56 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=42.1
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....|++++..+|++.++|||+.+ +|......+.+.++++.+++
T Consensus 146 S~Gq~qrv~la~al~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~~~ 194 (250)
T PRK11264 146 SGGQQQRVAIARALAMRPEVILFDEPTSA-----LDPELVGEVLNTIRQLAQEK 194 (250)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHhcC
Confidence 34455567799999999999999999999 99999999999999887654
No 403
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.80 E-value=5.1e-08 Score=70.30 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHhCC--CCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 159 NFEKPFLYLARKLAGD--PNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~--~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+-+.....|++++..+ |++.++|||..+ +|......+.+.++++.+.
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~-----LD~~~~~~l~~~l~~~~~~ 138 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTG-----LHQQDINQLLEVIKGLIDL 138 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhC
Confidence 3345556799999999 999999999999 9999999999999987644
No 404
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=1.5e-07 Score=73.51 Aligned_cols=51 Identities=12% Similarity=0.111 Sum_probs=43.9
Q ss_pred CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
+-+|-+.....|++++...|++.++|||+.+ +|+.......+.++++.+++
T Consensus 145 ~LSgGq~qrl~laral~~~p~lLlLDEPt~g-----LD~~~~~~l~~~l~~l~~~g 195 (287)
T PRK13641 145 ELSGGQMRRVAIAGVMAYEPEILCLDEPAAG-----LDPEGRKEMMQLFKDYQKAG 195 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHHhCC
Confidence 3345566677899999999999999999999 99999999999999886544
No 405
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=2.5e-08 Score=77.88 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=42.8
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-.|-+.....|+++++.+|++.++|||+.+ +|+.....+.+.+++++.+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~g-----LD~~~~~~l~~~l~~l~~~ 193 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAG-----LDPKGRDEILNKIKELHKE 193 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccC-----CCHHHHHHHHHHHHHHHHh
Confidence 345556667899999999999999999999 9999999999999988654
No 406
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.79 E-value=1.9e-07 Score=70.84 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=41.6
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.|-+.....|++++..+|++.++|||+.+ +|+.....+.+.+++++.+
T Consensus 155 S~G~~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~ 202 (236)
T cd03267 155 SLGQRMRAEIAAALLHEPEILFLDEPTIG-----LDVVAQENIRNFLKEYNRE 202 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCC-----CCHHHHHHHHHHHHHHHhc
Confidence 34455556799999999999999999999 9999999999999988653
No 407
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.79 E-value=2.3e-07 Score=69.84 Aligned_cols=49 Identities=20% Similarity=0.147 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.+-+.....|++++..+|++.++|||..+ +|......+.+.++++..++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~-----LD~~~~~~l~~~L~~~~~~~ 174 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNG-----LDPIGIQELRELIRSFPEQG 174 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccC-----CCHHHHHHHHHHHHHHHHCC
Confidence 34455567799999999999999999999 99999999999999886543
No 408
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.79 E-value=2.9e-08 Score=80.61 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=43.8
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
-+|-+.....|++++.++|++.++|||+.+ +|+..+.++.+.++++++++
T Consensus 140 LSgGerQRv~IArAL~~~P~iLLLDEPtsg-----LD~~~~~~l~~lL~~l~~~g 189 (402)
T PRK09536 140 LSGGERQRVLLARALAQATPVLLLDEPTAS-----LDINHQVRTLELVRRLVDDG 189 (402)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHhcC
Confidence 345566678899999999999999999999 99999999999999987654
No 409
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.79 E-value=4e-08 Score=68.78 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=42.8
Q ss_pred CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.-.|-+.....|++.+.-.|.+.++||++++ +|+...+.+++.+.++-.
T Consensus 133 ~lSGGE~QriAliR~Lq~~P~ILLLDE~TsA-----LD~~nkr~ie~mi~~~v~ 181 (223)
T COG4619 133 ELSGGEKQRIALIRNLQFMPKILLLDEITSA-----LDESNKRNIEEMIHRYVR 181 (223)
T ss_pred hccchHHHHHHHHHHhhcCCceEEecCchhh-----cChhhHHHHHHHHHHHhh
Confidence 3456677778999999999999999999999 999999999999887653
No 410
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=9.1e-08 Score=76.77 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=42.9
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-.|-+.....|++++..+|++.++|||.++ +|......+.+.++++..+
T Consensus 135 LSgGq~QRvalARAL~~~P~llLLDEP~s~-----LD~~~r~~l~~~l~~l~~~ 183 (356)
T PRK11650 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSN-----LDAKLRVQMRLEIQRLHRR 183 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence 345566678899999999999999999999 9999999999999987654
No 411
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.78 E-value=1.3e-07 Score=66.13 Aligned_cols=42 Identities=33% Similarity=0.430 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHh
Q 027607 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAA 207 (221)
Q Consensus 161 ~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~ 207 (221)
+.....|++++..+|++.++|||..+ +|........+.++++
T Consensus 75 ~~~rv~laral~~~p~illlDEP~~~-----LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 75 EKMRLALAKLLLENPNLLLLDEPTNH-----LDLESIEALEEALKEY 116 (144)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHc
Confidence 44456799999999999999999999 9999999999999876
No 412
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.78 E-value=2.9e-07 Score=68.81 Aligned_cols=50 Identities=20% Similarity=0.127 Sum_probs=43.1
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
-.+-+.....|++++..+|++.++|||.++ +|+.......+.++++..++
T Consensus 138 LS~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~ 187 (214)
T PRK13543 138 LSAGQKKRLALARLWLSPAPLWLLDEPYAN-----LDLEGITLVNRMISAHLRGG 187 (214)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhCC
Confidence 345566678899999999999999999999 99999999999998876553
No 413
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.78 E-value=1.9e-08 Score=81.29 Aligned_cols=73 Identities=12% Similarity=0.143 Sum_probs=55.1
Q ss_pred ccHHHHHHHhhcCCeE---EEecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 134 VKAKQVTFHRKKNLQY---YEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 134 ~~~~~~~~~~~~~~~~---~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
...+....+.++++++ -.++.++ -| ...+..|.++++.++++.++|||++. +.+++..++...+++++++
T Consensus 117 ~~~~i~~l~~~yGl~vdp~~~V~dLs-VG-~qQRVEIlKaLyr~a~iLILDEPTaV-----LTP~E~~~lf~~l~~l~~~ 189 (501)
T COG3845 117 ARARIKELSERYGLPVDPDAKVADLS-VG-EQQRVEILKALYRGARLLILDEPTAV-----LTPQEADELFEILRRLAAE 189 (501)
T ss_pred HHHHHHHHHHHhCCCCCccceeecCC-cc-hhHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHC
Confidence 3444556667777652 2233332 23 33457899999999999999999999 9999999999999999998
Q ss_pred CCC
Q 027607 211 PLP 213 (221)
Q Consensus 211 ~~~ 213 (221)
+.+
T Consensus 190 G~t 192 (501)
T COG3845 190 GKT 192 (501)
T ss_pred CCE
Confidence 764
No 414
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.78 E-value=1.3e-07 Score=72.07 Aligned_cols=47 Identities=26% Similarity=0.306 Sum_probs=41.3
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.|-+.....|++++..+|++.++|||+++ +|+.....+.+.+++++.
T Consensus 137 S~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~L~~~~~ 183 (242)
T cd03295 137 SGGQQQRVGVARALAADPPLLLMDEPFGA-----LDPITRDQLQEEFKRLQQ 183 (242)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 34456667799999999999999999999 999999999999998764
No 415
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=9.9e-08 Score=74.49 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=43.5
Q ss_pred cCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 155 KSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 155 ~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
..-.|-+.....|+++++.+|++.++|||..+ +|+.....+.+.++++..
T Consensus 144 ~~LSgGq~qrv~laraL~~~p~illlDEPt~~-----LD~~~~~~l~~~l~~l~~ 193 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG-----LDPQSKRQVMRLLKSLQT 193 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHH
Confidence 33445566678899999999999999999999 999999999999998864
No 416
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.77 E-value=1.3e-07 Score=71.60 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=41.6
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.|-+.....|++++..+|++.++|||+.+ +|+.....+.+.+++++.
T Consensus 147 SgG~~qrl~la~al~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~ 193 (233)
T PRK11629 147 SGGERQRVAIARALVNNPRLVLADEPTGN-----LDARNADSIFQLLGELNR 193 (233)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHH
Confidence 45566667899999999999999999999 999999999999998864
No 417
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.77 E-value=1.9e-07 Score=69.11 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=42.1
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.+-+.....|++++..+|++.++|||..+ +|......+.+.++++.+++
T Consensus 129 S~G~~~rv~laral~~~p~~lilDEP~~~-----LD~~~~~~l~~~l~~~~~~~ 177 (200)
T PRK13540 129 SSGQKRQVALLRLWMSKAKLWLLDEPLVA-----LDELSLLTIITKIQEHRAKG 177 (200)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcc-----cCHHHHHHHHHHHHHHHHcC
Confidence 34455667799999999999999999999 99999999999999875543
No 418
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.77 E-value=1.3e-07 Score=71.97 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
|-+.....|++++..+|++.++|||+.+ +|+.....+.+.++++..++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~g 187 (241)
T PRK10895 140 GGERRRVEIARALAANPKFILLDEPFAG-----VDPISVIDIKRIIEHLRDSG 187 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHhcC
Confidence 4455567799999999999999999999 99999999999888876544
No 419
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.77 E-value=1.3e-07 Score=71.06 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=41.3
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.|-+.....|++++..+|++.++|||+.+ +|......+.+.++++..
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~-----LD~~~~~~l~~~l~~~~~ 189 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGN-----LDNNNAKIIFDLMLELNR 189 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHH
Confidence 34455567899999999999999999999 999999999999998864
No 420
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.77 E-value=3.2e-08 Score=77.18 Aligned_cols=58 Identities=21% Similarity=0.176 Sum_probs=45.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~ 72 (221)
.+.++++|+|.+|||||||+|++..... ....+.+|+|.....+..+. .+.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKI-AKTGNRPGVTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCc-cccCCCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence 4568999999999999999999765443 34566788887776665543 4789999996
No 421
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.77 E-value=1.8e-07 Score=69.24 Aligned_cols=47 Identities=11% Similarity=0.071 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+-+.....|+++++.+|++.++|||..+ +|....+.+.+.++++.++
T Consensus 121 ~Ge~qrl~laral~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~~ 167 (202)
T cd03233 121 GGERKRVSIAEALVSRASVLCWDNSTRG-----LDSSTALEILKCIRTMADV 167 (202)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHHHh
Confidence 4455557799999999999999999999 9999999999999988654
No 422
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.77 E-value=1.2e-07 Score=75.55 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=42.7
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+|-+.....|++++..+|++.++|||+++ +|+.....+.+.+++++++
T Consensus 142 SgGqkQRV~IARAL~~~P~iLLlDEPts~-----LD~~t~~~i~~lL~~l~~~ 189 (343)
T TIGR02314 142 SGGQKQRVAIARALASNPKVLLCDEATSA-----LDPATTQSILELLKEINRR 189 (343)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence 34556667899999999999999999999 9999999999999998764
No 423
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.77 E-value=1.7e-07 Score=73.64 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+-+.....|++++..+|++.++|||+.+ +|+.......+.++++.+
T Consensus 136 ~G~~qrv~la~al~~~p~lliLDEPt~g-----LD~~~~~~l~~~l~~~~~ 181 (301)
T TIGR03522 136 KGYRQRVGLAQALIHDPKVLILDEPTTG-----LDPNQLVEIRNVIKNIGK 181 (301)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHhcC
Confidence 3345556799999999999999999999 999999999999998864
No 424
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.76 E-value=1.7e-07 Score=75.36 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=43.7
Q ss_pred CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.-+|-+.....|++++..+|++.++|||.++ +|.....+..+.++++.++
T Consensus 137 ~LSgGq~QRvaLARAL~~~P~llLLDEP~s~-----LD~~~r~~l~~~l~~l~~~ 186 (362)
T TIGR03258 137 QLSGGMQQRIAIARAIAIEPDVLLLDEPLSA-----LDANIRANMREEIAALHEE 186 (362)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCcccc-----CCHHHHHHHHHHHHHHHHh
Confidence 3345566678899999999999999999999 9999999999999988765
No 425
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=2e-07 Score=71.58 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=40.7
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhh
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
.|-+.....|++++...|++.++|||+.+ +|+.....+.+.++++.
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~-----LD~~~~~~l~~~L~~~~ 175 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGA-----LDAFTREQMQTLLLKLW 175 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHH
Confidence 34455667799999999999999999999 99999999999999874
No 426
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=1.9e-07 Score=72.94 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=43.7
Q ss_pred CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.-.|-+.....|+++++..|++.++|||+.+ +|+.....+.+.++++++++
T Consensus 144 ~LSgGqkqrvaiA~aL~~~p~illLDEPt~g-----LD~~~~~~l~~~l~~l~~~g 194 (288)
T PRK13643 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAG-----LDPKARIEMMQLFESIHQSG 194 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCccC-----CCHHHHHHHHHHHHHHHHCC
Confidence 3345566667899999999999999999999 99999999999999887544
No 427
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.76 E-value=1.2e-07 Score=72.71 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=41.0
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.|-+.....|++++...|++.++|||+.+ +|+.....+.+.++++..
T Consensus 135 SgGqkqrl~laraL~~~p~lllLDEPt~~-----LD~~~~~~l~~~L~~~~~ 181 (257)
T PRK11247 135 SGGQKQRVALARALIHRPGLLLLDEPLGA-----LDALTRIEMQDLIESLWQ 181 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHH
Confidence 34456667799999999999999999999 999999999999988753
No 428
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.76 E-value=3.2e-08 Score=70.18 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=41.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCC
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g 71 (221)
...+++++|.+|+|||||+|++..+ ....+.++.|.+.....+..+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGR-HSASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 4578999999999999999997643 3445566777665543333332 589999999
No 429
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=9.5e-08 Score=69.32 Aligned_cols=47 Identities=28% Similarity=0.374 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+-+.....|++++..+|++.++|||..+ +|+.....+.+.+++++.+
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~~-----LD~~~~~~l~~~l~~~~~~ 149 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTSA-----LDPITRREVRALLKSLQAQ 149 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence 4455567799999999999999999999 9999999999999988765
No 430
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.76 E-value=2.3e-07 Score=70.12 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=41.7
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.|-+.....|++++..+|++.++|||+.+ +|+...+.+.+.++++..+
T Consensus 116 SgG~~qrv~la~al~~~p~lllLDEPt~g-----LD~~~~~~l~~~l~~~~~~ 163 (230)
T TIGR01184 116 SGGMKQRVAIARALSIRPKVLLLDEPFGA-----LDALTRGNLQEELMQIWEE 163 (230)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCCcC-----CCHHHHHHHHHHHHHHHHh
Confidence 34455567799999999999999999999 9999999999999987653
No 431
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.76 E-value=2.8e-08 Score=77.08 Aligned_cols=58 Identities=22% Similarity=0.180 Sum_probs=44.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~ 72 (221)
.+.++++|+|.+|+|||||+|++..... ......+|+|.....+.+.. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKV-AKVGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 4568999999999999999999765443 34456777777776665543 4789999996
No 432
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.75 E-value=1.6e-07 Score=71.56 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=42.5
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....|++++..+|++.++|||+++ +|+.......+.++++.+++
T Consensus 143 S~G~~qrv~laral~~~p~llilDEPt~~-----LD~~~~~~l~~~l~~~~~~~ 191 (242)
T PRK11124 143 SGGQQQRVAIARALMMEPQVLLFDEPTAA-----LDPEITAQIVSIIRELAETG 191 (242)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCc-----CCHHHHHHHHHHHHHHHHcC
Confidence 44566667899999999999999999999 99999999999999886543
No 433
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.75 E-value=1.8e-07 Score=69.53 Aligned_cols=49 Identities=24% Similarity=0.231 Sum_probs=42.5
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....|++++..+|++.++|||+.+ +|......+.+.++++..++
T Consensus 129 S~G~~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~ 177 (207)
T PRK13539 129 SAGQKRRVALARLLVSNRPIWILDEPTAA-----LDAAAVALFAELIRAHLAQG 177 (207)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHCC
Confidence 34455667799999999999999999999 99999999999999876554
No 434
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.75 E-value=2.4e-08 Score=78.93 Aligned_cols=58 Identities=24% Similarity=0.267 Sum_probs=48.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~ 72 (221)
.+.++++|+|.||||||||+|+|++... ....+.+|+|.....+.+..+ +.++||||.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 4568999999999999999999665544 667888899999888887765 889999994
No 435
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.75 E-value=2e-07 Score=72.15 Aligned_cols=48 Identities=19% Similarity=0.111 Sum_probs=41.8
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.|-+.....|++++..+|++.++|||+.+ +|......+.+.++++.++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~~ 192 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVG-----QDPITMGVLVKLISELNSA 192 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHHHh
Confidence 34455667799999999999999999999 9999999999999988653
No 436
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.75 E-value=8.3e-08 Score=71.67 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=42.4
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....|++++..+|++.++|||+.+ +|+.....+.+.+++++.++
T Consensus 134 SgG~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~ 182 (213)
T cd03235 134 SGGQQQRVLLARALVQDPDLLLLDEPFAG-----VDPKTQEDIYELLRELRREG 182 (213)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhcC
Confidence 34455667799999999999999999999 99999999999999887543
No 437
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.75 E-value=2.1e-07 Score=69.61 Aligned_cols=47 Identities=34% Similarity=0.362 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
|-+.....|++++...|++.++|||+.+ +|....+.+.+.+++++.+
T Consensus 134 ~G~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~ 180 (214)
T cd03297 134 GGEKQRVALARALAAQPELLLLDEPFSA-----LDRALRLQLLPELKQIKKN 180 (214)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHH
Confidence 4455667799999999999999999999 9999999999999988653
No 438
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.74 E-value=2.3e-07 Score=74.49 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=42.4
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.|-+.....|++++..+|++.++|||.++ +|......+.+.++++..+
T Consensus 130 SgGq~qRvalaraL~~~p~llLLDEPts~-----LD~~~~~~l~~~L~~l~~~ 177 (352)
T PRK11144 130 SGGEKQRVAIGRALLTAPELLLMDEPLAS-----LDLPRKRELLPYLERLARE 177 (352)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence 45566667899999999999999999999 9999999999999988654
No 439
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.74 E-value=1.1e-07 Score=71.54 Aligned_cols=47 Identities=17% Similarity=0.267 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
|-+.....|++++..+|++.++|||+.+ +|......+.+.++++..+
T Consensus 135 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~ 181 (222)
T cd03224 135 GGEQQMLAIARALMSRPKLLLLDEPSEG-----LAPKIVEEIFEAIRELRDE 181 (222)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCccc-----CCHHHHHHHHHHHHHHHHC
Confidence 4455557799999999999999999999 9999999999999988654
No 440
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.74 E-value=3.2e-07 Score=73.75 Aligned_cols=49 Identities=20% Similarity=0.207 Sum_probs=43.1
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-.|-+.....|++++..+|++.++|||.++ +|+.....+.+.++++..+
T Consensus 132 LSgGqkqRvalAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~L~~l~~~ 180 (354)
T TIGR02142 132 LSGGEKQRVAIGRALLSSPRLLLMDEPLAA-----LDDPRKYEILPYLERLHAE 180 (354)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCcC-----CCHHHHHHHHHHHHHHHHh
Confidence 345566677899999999999999999999 9999999999999988764
No 441
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.74 E-value=1.7e-07 Score=71.96 Aligned_cols=48 Identities=15% Similarity=0.251 Sum_probs=42.1
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.|-+.....|++++..+|++.++|||.++ +|+.....+.+.+.++.++
T Consensus 155 S~G~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~L~~~~~~ 202 (255)
T PRK11300 155 AYGQQRRLEIARCMVTQPEILMLDEPAAG-----LNPKETKELDELIAELRNE 202 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccC-----CCHHHHHHHHHHHHHHHhh
Confidence 44555667799999999999999999999 9999999999999988654
No 442
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.74 E-value=4.4e-08 Score=72.40 Aligned_cols=43 Identities=23% Similarity=0.330 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 163 PFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 163 ~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-...|+|++.-+|++.++|||+++ +||-....+.+.++.++..
T Consensus 152 KRvaLARAialdPell~~DEPtsG-----LDPI~a~~~~~LI~~L~~~ 194 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSG-----LDPISAGVIDELIRELNDA 194 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCC-----CCcchHHHHHHHHHHHHHh
Confidence 357899999999999999999999 9999999999999988876
No 443
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.74 E-value=2.9e-07 Score=71.26 Aligned_cols=47 Identities=23% Similarity=0.248 Sum_probs=41.7
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.|-+.....|++++..+|++.++|||+.+ +|......+.+.++++..
T Consensus 162 S~Gq~qrv~lAral~~~p~illLDEPt~~-----LD~~~~~~l~~~l~~~~~ 208 (269)
T cd03294 162 SGGMQQRVGLARALAVDPDILLMDEAFSA-----LDPLIRREMQDELLRLQA 208 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHHH
Confidence 45566667899999999999999999999 999999999999998764
No 444
>PRK00098 GTPase RsgA; Reviewed
Probab=98.74 E-value=5.5e-08 Score=76.24 Aligned_cols=85 Identities=15% Similarity=0.137 Sum_probs=62.9
Q ss_pred ccccccEEEEEEECCChhhhcc-HHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cccHHHHHHHhhcCCeEEEecccCCCC
Q 027607 82 YYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYN 159 (221)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~g 159 (221)
...++|.+++|+|+.++.++.. +..|+..+.. .++|+++|+||+|+.+. ....+........+.+++.+|+.++.|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g 154 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEG 154 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 3589999999999988765444 4566655543 47999999999999632 222233445556678999999999999
Q ss_pred hHHHHHHHH
Q 027607 160 FEKPFLYLA 168 (221)
Q Consensus 160 v~~~~~~l~ 168 (221)
+++++..+.
T Consensus 155 i~~L~~~l~ 163 (298)
T PRK00098 155 LDELKPLLA 163 (298)
T ss_pred HHHHHhhcc
Confidence 999887664
No 445
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.74 E-value=2.4e-07 Score=74.23 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=44.1
Q ss_pred cCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 155 KSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 155 ~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
..-.|-+.....|++++..+|++.++|||.++ +|........+.++++..+
T Consensus 133 ~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~-----LD~~~r~~l~~~L~~l~~~ 183 (353)
T TIGR03265 133 GQLSGGQQQRVALARALATSPGLLLLDEPLSA-----LDARVREHLRTEIRQLQRR 183 (353)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence 34456667778899999999999999999999 9999999999999987654
No 446
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.74 E-value=2.2e-07 Score=70.19 Aligned_cols=48 Identities=21% Similarity=0.287 Sum_probs=41.8
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.|-+.....|++++...|++.++|||+.+ +|+.....+.+.+++++.+
T Consensus 148 S~Ge~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~ 195 (228)
T PRK10584 148 SGGEQQRVALARAFNGRPDVLFADEPTGN-----LDRQTGDKIADLLFSLNRE 195 (228)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHHh
Confidence 34456667799999999999999999999 9999999999999988643
No 447
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.5e-07 Score=67.98 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=45.1
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL 212 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (221)
+|-++-...|++.++-+|++.++|||.++ +|..+.+.+.+.++++++++.
T Consensus 146 SGGEkKR~EilQ~~~lePkl~ILDE~DSG-----LDIdalk~V~~~i~~lr~~~~ 195 (251)
T COG0396 146 SGGEKKRNEILQLLLLEPKLAILDEPDSG-----LDIDALKIVAEGINALREEGR 195 (251)
T ss_pred CcchHHHHHHHHHHhcCCCEEEecCCCcC-----ccHHHHHHHHHHHHHHhcCCC
Confidence 35566678999999999999999999999 999999999999999998864
No 448
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.73 E-value=2.5e-07 Score=70.34 Aligned_cols=47 Identities=21% Similarity=0.245 Sum_probs=41.4
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.+-+.....|++++..+|++.++|||+++ +|+.....+.+.+++++.
T Consensus 138 S~G~~qrl~la~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~ 184 (239)
T cd03296 138 SGGQRQRVALARALAVEPKVLLLDEPFGA-----LDAKVRKELRRWLRRLHD 184 (239)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 34455667799999999999999999999 999999999999998865
No 449
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=8.8e-08 Score=74.21 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....|++++...|++.++|||+++ +|......+.+.++++.+++
T Consensus 138 SgG~~qrl~laraL~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~~g 186 (271)
T PRK13638 138 SHGQKKRVAIAGALVLQARYLLLDEPTAG-----LDPAGRTQMIAIIRRIVAQG 186 (271)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHCC
Confidence 34455567799999999999999999999 99999999999999887554
No 450
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=2.1e-07 Score=72.74 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=42.7
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-.|-+.....|++++..+|++.++|||+.+ +|+.....+.+.+++++.+
T Consensus 146 LSgGq~qrv~lAraL~~~P~llllDEPt~~-----LD~~~~~~l~~~L~~l~~~ 194 (290)
T PRK13634 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAG-----LDPKGRKEMMEMFYKLHKE 194 (290)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHHh
Confidence 344566667899999999999999999999 9999999999999988654
No 451
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1.7e-07 Score=77.04 Aligned_cols=137 Identities=11% Similarity=0.153 Sum_probs=83.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
.+|.+-++|+||+|+|||||++.|.............| +++ .+.++..++++..+|.. ..++ ....+-+|.+
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiT-vvsgK~RRiTflEcp~D--l~~m-iDvaKIaDLV 137 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PIT-VVSGKTRRITFLECPSD--LHQM-IDVAKIADLV 137 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceE-EeecceeEEEEEeChHH--HHHH-HhHHHhhhee
Confidence 45679999999999999999999765433322222222 112 23457789999999842 3333 3445678999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHH--------HHhhcCCeEEEecccC
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT--------FHRKKNLQYYEISAKS 156 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~--------~~~~~~~~~~~~s~~~ 156 (221)
++++|.+-.-..+.+ .+..+.....-..++-|++..|+-.......... .....|.++|.+|-..
T Consensus 138 lLlIdgnfGfEMETm--EFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 138 LLLIDGNFGFEMETM--EFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred EEEeccccCceehHH--HHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 999998765333332 2223333333445677889999854332222111 1123477888888654
No 452
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.73 E-value=2e-07 Score=74.73 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=43.2
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-.|-+.....|++++..+|++.++|||.++ +|........+.++++..+
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~-----LD~~~r~~l~~~L~~l~~~ 185 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGA-----LDAQVRKELRRWLRQLHEE 185 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHHh
Confidence 345566678899999999999999999999 9999999999999988764
No 453
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.73 E-value=3.5e-07 Score=69.92 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=42.4
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-.|-+.....|++++..+|++.++|||+.+ +|+.....+.+.++++.+.
T Consensus 145 LSgG~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~ 193 (247)
T TIGR00972 145 LSGGQQQRLCIARALAVEPEVLLLDEPTSA-----LDPIATGKIEELIQELKKK 193 (247)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhc
Confidence 345566667899999999999999999999 9999999999999987653
No 454
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.73 E-value=1.2e-08 Score=76.05 Aligned_cols=48 Identities=23% Similarity=0.316 Sum_probs=40.2
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+|-+.....+++++...|++.++|||..+ +|+-......+.+.++.++
T Consensus 137 SGGQQQRVGv~RALAadP~ilLMDEPFgA-----LDpI~R~~lQ~e~~~lq~~ 184 (309)
T COG1125 137 SGGQQQRVGVARALAADPPILLMDEPFGA-----LDPITRKQLQEEIKELQKE 184 (309)
T ss_pred CcchhhHHHHHHHHhcCCCeEeecCCccc-----cChhhHHHHHHHHHHHHHH
Confidence 35566668899999999999999999999 9998888888887766554
No 455
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.73 E-value=2.1e-07 Score=74.73 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=42.5
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-+|-+.....|++++..+|++.++|||.++ +|+.....+.+.+.++..
T Consensus 130 LSGGq~QRV~lARAL~~~p~iLLlDEP~sa-----LD~~~r~~l~~~l~~l~~ 177 (363)
T TIGR01186 130 LSGGMQQRVGLARALAAEPDILLMDEAFSA-----LDPLIRDSMQDELKKLQA 177 (363)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 345566678899999999999999999999 999999999999998864
No 456
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=8.7e-08 Score=70.73 Aligned_cols=158 Identities=16% Similarity=0.182 Sum_probs=90.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc---ccccccccEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR---DGYYIHGQCAI 90 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~---~~~~~~~d~~i 90 (221)
.+|+++|...|||||+.+....+.-+.. .-....|.....-.+.+.-+.+.+||.||+-.+-.-. ...++.+.+++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPne-TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNE-TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCc-eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 5699999999999999987443322111 1011111111111233455789999999985442221 34578899999
Q ss_pred EEEECCChhhhccHHHHHHHHH---hhcCCCCEEEEEeCCCcCCccccHH-----------HHHHHhhcC--CeEEEecc
Q 027607 91 IMFDVTARLTYKNVPTWHRDLC---RVCENIPIVLCGNKVDVKNRQVKAK-----------QVTFHRKKN--LQYYEISA 154 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~---~~~~~~p~ivv~nK~D~~~~~~~~~-----------~~~~~~~~~--~~~~~~s~ 154 (221)
+|+|+.+.. .+.+..+...+. ..++++.+-+.+.|.|........+ .+.-....+ +.++-+|.
T Consensus 107 fvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 107 FVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 999997642 222333332222 2346788889999999643221111 111111122 33555554
Q ss_pred cCCCChHHHHHHHHHHHhCC
Q 027607 155 KSNYNFEKPFLYLARKLAGD 174 (221)
Q Consensus 155 ~~~~gv~~~~~~l~~~l~~~ 174 (221)
. ...+-+.|..+.+.+.+.
T Consensus 186 y-DHSIfEAFSkvVQkLipq 204 (347)
T KOG3887|consen 186 Y-DHSIFEAFSKVVQKLIPQ 204 (347)
T ss_pred c-chHHHHHHHHHHHHHhhh
Confidence 4 567788888888876553
No 457
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=2.8e-07 Score=73.80 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=42.9
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-+|-+.....|++++..+|++.++|||.++ +|..........++++.++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~~ 185 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSN-----LDANLRRSMREKIRELQQQ 185 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence 345566678899999999999999999999 9999999999999988654
No 458
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.72 E-value=3e-07 Score=69.96 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=42.1
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.+-+.....|++++..+|++.++|||+.+ +|+.....+.+.++++.+++
T Consensus 138 S~G~~qrv~la~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~~~ 186 (240)
T PRK09493 138 SGGQQQRVAIARALAVKPKLMLFDEPTSA-----LDPELRHEVLKVMQDLAEEG 186 (240)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHcC
Confidence 34455667799999999999999999999 99999999999999886543
No 459
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=1.6e-07 Score=72.91 Aligned_cols=51 Identities=22% Similarity=0.151 Sum_probs=44.2
Q ss_pred CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.-.|-+.....|++++..+|++.++|||+.+ +|+.....+.+.+++++.++
T Consensus 138 ~LSgG~~qrv~laraL~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~g 188 (274)
T PRK13647 138 HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAY-----LDPRGQETLMEILDRLHNQG 188 (274)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEECCCcC-----CCHHHHHHHHHHHHHHHHCC
Confidence 3445566678899999999999999999999 99999999999999887654
No 460
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.72 E-value=2.5e-07 Score=74.65 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=42.6
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-+|-+.....|++++..+|++.++|||.++ +|......+.+.++++..+
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~-----LD~~~~~~l~~~L~~l~~~ 182 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSN-----LDAALRVQMRIEISRLHKR 182 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHH
Confidence 345566667899999999999999999999 9999999999999887653
No 461
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.72 E-value=8.4e-08 Score=69.28 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
|-+.....|++++..+|++.++|||..+ +|+.....+.+.+++++.++
T Consensus 99 ~G~~qrv~la~al~~~p~~lllDEPt~~-----LD~~~~~~l~~~l~~~~~~~ 146 (173)
T cd03246 99 GGQRQRLGLARALYGNPRILVLDEPNSH-----LDVEGERALNQAIAALKAAG 146 (173)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccc-----cCHHHHHHHHHHHHHHHhCC
Confidence 4455567799999999999999999999 99999999999999887654
No 462
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.72 E-value=7.6e-08 Score=74.32 Aligned_cols=48 Identities=19% Similarity=0.148 Sum_probs=42.0
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.|-+.....|++++..+|++.++|||+.+ +|+.....+.+.++++..+
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~-----LD~~~~~~l~~~l~~~~~~ 199 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSN-----LDMVLQAVILELLRKLQQA 199 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence 45566667899999999999999999999 9999999999999988653
No 463
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.71 E-value=6.1e-08 Score=73.14 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=41.9
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.|-+.....|++++..+|++.++|||+.+ +|+.....+.+.+++++.+
T Consensus 147 S~G~~qrv~laral~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~~ 194 (228)
T cd03257 147 SGGQRQRVAIARALALNPKLLIADEPTSA-----LDVSVQAQILDLLKKLQEE 194 (228)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCCCC-----CCHHHHHHHHHHHHHHHHH
Confidence 34456667799999999999999999999 9999999999999988653
No 464
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.71 E-value=5e-08 Score=69.16 Aligned_cols=57 Identities=18% Similarity=0.182 Sum_probs=41.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCC
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g 71 (221)
....+++++|.+|+|||||+|+++.... .......++|.....+.+. ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~-~~~~~~~~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLK-LKVGNVPGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccc-ccccCCCCcccceEEEEec---CCEEEEECCC
Confidence 4568899999999999999999665443 2234455666666665554 3588999999
No 465
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.71 E-value=1e-07 Score=67.66 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=41.9
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+|-+.....+++++.+..++.++|||.+. +++.-..+..+.+.++..+
T Consensus 131 SGGqRQRvALARclvR~~PilLLDEPFsA-----LdP~LR~eMl~Lv~~l~~E 178 (231)
T COG3840 131 SGGQRQRVALARCLVREQPILLLDEPFSA-----LDPALRAEMLALVSQLCDE 178 (231)
T ss_pred CchHHHHHHHHHHHhccCCeEEecCchhh-----cCHHHHHHHHHHHHHHHHh
Confidence 35566678899999999999999999999 9999999999988887655
No 466
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=2.7e-07 Score=71.61 Aligned_cols=49 Identities=10% Similarity=0.025 Sum_probs=42.6
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.+-+.....|+++++.+|++.++|||+.+ +|+.....+.+.++++..++
T Consensus 138 S~G~~qrv~laral~~~p~lllLDEPt~g-----LD~~~~~~l~~~l~~l~~~g 186 (274)
T PRK13644 138 SGGQGQCVALAGILTMEPECLIFDEVTSM-----LDPDSGIAVLERIKKLHEKG 186 (274)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhCC
Confidence 34456667799999999999999999999 99999999999999887554
No 467
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.70 E-value=2e-07 Score=78.05 Aligned_cols=49 Identities=24% Similarity=0.238 Sum_probs=43.1
Q ss_pred CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+-+|-+.....|++++...|.+.++|||++. +|.+....++..+.+...
T Consensus 153 ~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNH-----LD~~~i~WLe~~L~~~~g 201 (530)
T COG0488 153 SLSGGWRRRVALARALLEEPDLLLLDEPTNH-----LDLESIEWLEDYLKRYPG 201 (530)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcc-----cCHHHHHHHHHHHHhCCC
Confidence 3456777888999999999999999999999 999999999999986544
No 468
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.70 E-value=2.3e-07 Score=74.84 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=42.9
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-.|-+.....|++++..+|++.++|||.++ +|+.......+.+.++..+
T Consensus 165 LSgGq~QRV~LARALa~~P~ILLlDEPts~-----LD~~~r~~l~~~L~~l~~~ 213 (382)
T TIGR03415 165 LSGGMQQRVGLARAFAMDADILLMDEPFSA-----LDPLIRTQLQDELLELQAK 213 (382)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCcc-----CCHHHHHHHHHHHHHHHHh
Confidence 345566667899999999999999999999 9999999999999988653
No 469
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=4.9e-07 Score=70.41 Aligned_cols=49 Identities=12% Similarity=0.140 Sum_probs=42.5
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....|++++..+|++.++|||+++ +|+.....+.+.+++++.++
T Consensus 147 SgG~~qrv~la~al~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~~~ 195 (280)
T PRK13649 147 SGGQMRRVAIAGILAMEPKILVLDEPTAG-----LDPKGRKELMTLFKKLHQSG 195 (280)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHCC
Confidence 34456667799999999999999999999 99999999999999886543
No 470
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.70 E-value=5.8e-07 Score=67.15 Aligned_cols=48 Identities=19% Similarity=0.166 Sum_probs=41.8
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.+-+.....|++++...|++.++|||..+ +|......+.+.++++.++
T Consensus 130 S~G~~qrl~laral~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~~ 177 (213)
T TIGR01277 130 SGGQRQRVALARCLVRPNPILLLDEPFSA-----LDPLLREEMLALVKQLCSE 177 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHHHh
Confidence 34455667899999999999999999999 9999999999999988653
No 471
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.70 E-value=7.1e-08 Score=70.11 Aligned_cols=47 Identities=28% Similarity=0.361 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+-+.....|++++..+|++.++|||..+ +|......+.+.++++..+
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~-----LD~~~~~~~~~~l~~~~~~ 146 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSH-----LDIAHQIELLELLRRLARE 146 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHHh
Confidence 3345556799999999999999999999 9999999999999987654
No 472
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=3.1e-07 Score=68.51 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=41.6
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.+-+.....|++++..+|++.++|||.++ +|......+.+.++++..
T Consensus 130 S~G~~qrv~ia~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~ 176 (211)
T cd03298 130 SGGERQRVALARVLVRDKPVLLLDEPFAA-----LDPALRAEMLDLVLDLHA 176 (211)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 34556667899999999999999999999 999999999999998864
No 473
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.70 E-value=3.7e-07 Score=69.52 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=41.1
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.|-+.....|++++..+|++.++|||..+ +|......+.+.+++++.
T Consensus 133 S~G~~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~ 179 (241)
T PRK14250 133 SGGEAQRVSIARTLANNPEVLLLDEPTSA-----LDPTSTEIIEELIVKLKN 179 (241)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 34455667799999999999999999999 999999999999998765
No 474
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.70 E-value=4.6e-07 Score=66.72 Aligned_cols=49 Identities=10% Similarity=0.108 Sum_probs=40.9
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.+-+.....|++++..+|++.++|||..+ +|+.......+.+++...++
T Consensus 125 S~G~~~rl~la~al~~~p~~lllDEP~~~-----LD~~~~~~l~~~l~~~~~~~ 173 (195)
T PRK13541 125 SSGMQKIVAIARLIACQSDLWLLDEVETN-----LSKENRDLLNNLIVMKANSG 173 (195)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhCC
Confidence 34455567799999999999999999999 99999999999987655443
No 475
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.70 E-value=2.2e-07 Score=73.88 Aligned_cols=49 Identities=22% Similarity=0.200 Sum_probs=42.9
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-+|-+.....|+++++.+|++.++|||+++ +|...+.++.+.++++..+
T Consensus 162 LSgG~~QRv~iArAL~~~P~llilDEPts~-----LD~~~~~~i~~lL~~l~~~ 210 (331)
T PRK15079 162 FSGGQCQRIGIARALILEPKLIICDEPVSA-----LDVSIQAQVVNLLQQLQRE 210 (331)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHHH
Confidence 345566667899999999999999999999 9999999999999988654
No 476
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.69 E-value=6.8e-07 Score=68.44 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=42.2
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-.|-+.....|++++...|++.++|||+.+ +|......+.+.++++..
T Consensus 147 LSgG~~qrv~laral~~~p~lllLDEP~~~-----LD~~~~~~l~~~l~~~~~ 194 (250)
T PRK14247 147 LSGGQQQRLCIARALAFQPEVLLADEPTAN-----LDPENTAKIESLFLELKK 194 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHhc
Confidence 345566667899999999999999999999 999999999999998754
No 477
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.69 E-value=7.2e-08 Score=79.12 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=45.9
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLP 213 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (221)
.-+..+..|++++..+.++.++|||++. ++..+...+.+.++++.+++.+
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaa-----Lt~~E~~~Lf~~ir~Lk~~Gv~ 197 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAA-----LTVKETERLFDLIRRLKAQGVA 197 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHhCCCE
Confidence 4467778999999999999999999999 9999999999999999998864
No 478
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.69 E-value=3.1e-07 Score=74.13 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=42.4
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.|-+.....|++++...|++.++|||.++ +|..........++++..+
T Consensus 146 SgGq~QRVaLARaL~~~P~llLLDEP~s~-----LD~~~r~~l~~~L~~l~~~ 193 (375)
T PRK09452 146 SGGQQQRVAIARAVVNKPKVLLLDESLSA-----LDYKLRKQMQNELKALQRK 193 (375)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHHh
Confidence 35566667899999999999999999999 9999999999999988764
No 479
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.69 E-value=7e-08 Score=72.80 Aligned_cols=48 Identities=25% Similarity=0.357 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.|-+.....|++++..+|++.++|||+++ +|......+.+.+++++.+
T Consensus 143 SgG~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~ 190 (227)
T cd03260 143 SGGQQQRLCLARALANEPEVLLLDEPTSA-----LDPISTAKIEELIAELKKE 190 (227)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHhhC
Confidence 34455667799999999999999999999 9999999999999988764
No 480
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=1.5e-07 Score=73.13 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=42.6
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-.|-+.....|++++...|++.++|||+.+ +|+.....+.+.++++..+
T Consensus 138 LS~Gq~qrl~laraL~~~p~llilDEPt~g-----LD~~~~~~l~~~l~~l~~~ 186 (277)
T PRK13652 138 LSGGEKKRVAIAGVIAMEPQVLVLDEPTAG-----LDPQGVKELIDFLNDLPET 186 (277)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence 345566667899999999999999999999 9999999999999988654
No 481
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.69 E-value=7.5e-07 Score=67.90 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=42.4
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....|++++..+|++.++|||+.+ +|......+.+.++++.+++
T Consensus 146 S~G~~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~ 194 (243)
T TIGR01978 146 SGGEKKRNEILQMALLEPKLAILDEIDSG-----LDIDALKIVAEGINRLREPD 194 (243)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCccc-----CCHHHHHHHHHHHHHHHHCC
Confidence 34455667799999999999999999999 99999999999999886543
No 482
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.68 E-value=5.9e-07 Score=68.13 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=42.9
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-.|-+.....|++++..+|++.++|||+.+ +|........+.++++..+
T Consensus 130 LS~G~~qrl~laral~~~p~llllDEPt~g-----LD~~~~~~l~~~l~~~~~~ 178 (235)
T cd03299 130 LSGGEQQRVAIARALVVNPKILLLDEPFSA-----LDVRTKEKLREELKKIRKE 178 (235)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence 345566678899999999999999999999 9999999999999987653
No 483
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.68 E-value=4.4e-07 Score=66.65 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
|-+.....|++++..+|++.++|||..+ +|........+.++++++++
T Consensus 111 gGe~qrv~la~al~~~p~vlllDEP~~~-----LD~~~~~~l~~~l~~~~~~~ 158 (192)
T cd03232 111 VEQRKRLTIGVELAAKPSILFLDEPTSG-----LDSQAAYNIVRFLKKLADSG 158 (192)
T ss_pred HHHhHHHHHHHHHhcCCcEEEEeCCCcC-----CCHHHHHHHHHHHHHHHHcC
Confidence 4445557799999999999999999999 99999999999999887543
No 484
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.68 E-value=3e-07 Score=69.05 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=41.8
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-.+-+.....|++++..+|++.++|||..+ +|......+.+.+++++.
T Consensus 142 lS~G~~qrv~laral~~~p~illlDEP~~~-----LD~~~~~~l~~~l~~~~~ 189 (220)
T TIGR02982 142 LSGGQKQRVAIARALVHRPKLVLADEPTAA-----LDSKSGRDVVELMQKLAR 189 (220)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHH
Confidence 344566667899999999999999999999 999999999999988764
No 485
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.68 E-value=3.6e-07 Score=70.67 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
|-+.....|++++..+|++.++|||..+ +|+.....+.+.+.++..
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~ 197 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALAS-----LDMSMRSQLINLMLELQE 197 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4455567799999999999999999999 999999999999998764
No 486
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.68 E-value=3e-07 Score=70.50 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=41.8
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.+-+.....|++++..+|++.++|||+++ +|+.....+.+.++++.++
T Consensus 141 S~G~~qrv~laral~~~p~illlDEPts~-----LD~~~~~~l~~~l~~l~~~ 188 (255)
T cd03236 141 SGGELQRVAIAAALARDADFYFFDEPSSY-----LDIKQRLNAARLIRELAED 188 (255)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHHhc
Confidence 34456667899999999999999999999 9999999999999988654
No 487
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.68 E-value=4.7e-08 Score=82.81 Aligned_cols=47 Identities=28% Similarity=0.327 Sum_probs=41.8
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.|-+...-.|+|++.++|++.++|||+++ +|.+..+.+.+.+.++..
T Consensus 472 SGGQrQRiaiARall~~~~iliLDE~TSa-----LD~~te~~I~~~l~~~~~ 518 (529)
T TIGR02868 472 SGGERQRLALARALLADAPILLLDEPTEH-----LDAGTESELLEDLLAALS 518 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHhcC
Confidence 45577778899999999999999999999 999999999999987643
No 488
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.68 E-value=7.3e-07 Score=68.59 Aligned_cols=47 Identities=19% Similarity=0.274 Sum_probs=41.4
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.|-+.....|++++..+|++.++|||+.+ +|+.....+.+.++++++
T Consensus 150 S~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~ 196 (258)
T PRK14241 150 SGGQQQRLCIARAIAVEPDVLLMDEPCSA-----LDPISTLAIEDLINELKQ 196 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHhc
Confidence 44556667899999999999999999999 999999999999998854
No 489
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.67 E-value=5.4e-07 Score=66.31 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
+-+.....|++++...|++.++|||..+ +|....+...+.++++.+++
T Consensus 114 ~G~~qrv~laral~~~p~illlDEP~~~-----LD~~~~~~l~~~l~~~~~~~ 161 (194)
T cd03213 114 GGERKRVSIALELVSNPSLLFLDEPTSG-----LDSSSALQVMSLLRRLADTG 161 (194)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHhCC
Confidence 4455567799999999999999999999 99999999999999887543
No 490
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.67 E-value=3.1e-07 Score=77.47 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=44.2
Q ss_pred CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
+-.|-+.....|+++++.+|++.++|||+++ +|+.....+.+.+++++.++
T Consensus 140 ~LSgG~~qrv~la~aL~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~~g 190 (510)
T PRK15439 140 SLEVADRQIVEILRGLMRDSRILILDEPTAS-----LTPAETERLFSRIRELLAQG 190 (510)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHHHCC
Confidence 3345566667899999999999999999999 99999999999999987654
No 491
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.67 E-value=3.4e-07 Score=74.40 Aligned_cols=47 Identities=21% Similarity=0.230 Sum_probs=41.6
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.|-+.....|++++..+|++.++|||.++ +|+.....+.+.+.++..
T Consensus 166 SgGq~QRv~LArAL~~~P~iLLLDEPts~-----LD~~~r~~l~~~L~~l~~ 212 (400)
T PRK10070 166 SGGMRQRVGLARALAINPDILLMDEAFSA-----LDPLIRTEMQDELVKLQA 212 (400)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCcc-----CCHHHHHHHHHHHHHHHH
Confidence 45556667899999999999999999999 999999999999998764
No 492
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.67 E-value=1.2e-07 Score=71.74 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=41.3
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.|-+.....|++++..+|++.++|||+.+ +|........+.++++..
T Consensus 127 S~G~~qrv~laral~~~p~vllLDEPt~~-----LD~~~~~~l~~~l~~~~~ 173 (230)
T TIGR02770 127 SGGMLQRVMIALALLLEPPFLIADEPTTD-----LDVVNQARVLKLLRELRQ 173 (230)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccc-----cCHHHHHHHHHHHHHHHH
Confidence 34456667799999999999999999999 999999999999998765
No 493
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=7e-08 Score=79.68 Aligned_cols=48 Identities=25% Similarity=0.250 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
|-+.....++|++..+.+++++|||+++ +|.+.++.+.+.+.+++++.
T Consensus 459 gGQ~QRlaLARAll~~~~l~llDEpTA~-----LD~etE~~i~~~l~~l~~~k 506 (559)
T COG4988 459 GGQAQRLALARALLSPASLLLLDEPTAH-----LDAETEQIILQALQELAKQK 506 (559)
T ss_pred HHHHHHHHHHHHhcCCCCEEEecCCccC-----CCHhHHHHHHHHHHHHHhCC
Confidence 4477778899999999999999999999 99999999999999988874
No 494
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=6.8e-08 Score=75.11 Aligned_cols=49 Identities=14% Similarity=0.126 Sum_probs=43.0
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-.|-+.....|++++...|++.++|||+.+ +|+.....+.+.++++..+
T Consensus 141 LS~G~~qrv~laral~~~p~lllLDEPt~g-----LD~~~~~~l~~~l~~l~~~ 189 (279)
T PRK13635 141 LSGGQKQRVAIAGVLALQPDIIILDEATSM-----LDPRGRREVLETVRQLKEQ 189 (279)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHc
Confidence 345566667899999999999999999999 9999999999999988764
No 495
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.66 E-value=6.2e-07 Score=67.56 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+-+.....|++++..+|++.++|||+.+ +|+.....+.+.++++..
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~ 185 (225)
T PRK10247 140 GGEKQRISLIRNLQFMPKVLLLDEITSA-----LDESNKHNVNEIIHRYVR 185 (225)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 4455567799999999999999999999 999999999999998764
No 496
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.66 E-value=1.7e-07 Score=71.90 Aligned_cols=47 Identities=15% Similarity=0.120 Sum_probs=41.1
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.|-+.....|++++..+|++.++|||+.+ +|......+.+.+++++.
T Consensus 142 S~Gq~qrv~laral~~~p~lLlLDEPt~~-----LD~~~~~~l~~~L~~~~~ 188 (254)
T PRK10418 142 SGGMLQRMMIALALLCEAPFIIADEPTTD-----LDVVAQARILDLLESIVQ 188 (254)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcc-----cCHHHHHHHHHHHHHHHH
Confidence 34455667799999999999999999999 999999999999998764
No 497
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=4.9e-07 Score=73.06 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=42.7
Q ss_pred cCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 155 KSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 155 ~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
..-.|-+.....|++++..+|++.++|||.++ +|........+.++++..
T Consensus 148 ~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~ 197 (377)
T PRK11607 148 HQLSGGQRQRVALARSLAKRPKLLLLDEPMGA-----LDKKLRDRMQLEVVDILE 197 (377)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 34456667778899999999999999999999 999999999888877654
No 498
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.66 E-value=5.2e-07 Score=67.92 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=43.2
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
-.+-+.....|++++..+|++.++|||+.+ +|+.....+.+.++++..++
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~g 199 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTAS-----LDAANRQVVVELIAEAKARG 199 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHhcC
Confidence 344556667899999999999999999999 99999999999999886554
No 499
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.66 E-value=7.2e-07 Score=67.95 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=41.7
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++..
T Consensus 145 S~Ge~qrv~laral~~~p~~lllDEPt~~-----LD~~~~~~l~~~l~~~~~ 191 (242)
T TIGR03411 145 SHGQKQWLEIGMLLMQDPKLLLLDEPVAG-----MTDEETEKTAELLKSLAG 191 (242)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCccC-----CCHHHHHHHHHHHHHHhc
Confidence 34456667899999999999999999999 999999999999998865
No 500
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=2.3e-07 Score=73.63 Aligned_cols=48 Identities=21% Similarity=0.204 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.|-+.....|++++..+|++.++|||+++ +|...+.++.+.++++..+
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~-----LD~~~~~~il~lL~~l~~~ 202 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTA-----LDVTIQAQIIELLLELQQK 202 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHHh
Confidence 34555567799999999999999999999 9999999999999988763
Done!