Query 027607
Match_columns 221
No_of_seqs 171 out of 1837
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 21:13:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027607.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027607hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gj0_A GTP-binding nuclear pro 100.0 1.1E-37 3.8E-42 233.2 20.1 211 8-218 10-220 (221)
2 4dkx_A RAS-related protein RAB 100.0 7.8E-37 2.7E-41 227.1 17.3 167 8-174 8-177 (216)
3 3q3j_B RHO-related GTP-binding 100.0 4E-32 1.4E-36 202.1 18.5 169 7-176 21-206 (214)
4 3kkq_A RAS-related protein M-R 100.0 1.4E-31 4.9E-36 194.2 19.6 166 7-173 12-182 (183)
5 1x3s_A RAS-related protein RAB 100.0 1.6E-31 5.3E-36 195.7 19.5 170 10-179 12-184 (195)
6 3tw8_B RAS-related protein RAB 100.0 3.1E-31 1E-35 191.8 20.6 164 10-173 6-171 (181)
7 1z2a_A RAS-related protein RAB 100.0 2.2E-31 7.5E-36 190.3 19.4 163 11-173 3-167 (168)
8 2hup_A RAS-related protein RAB 100.0 5.9E-32 2E-36 199.3 16.7 168 8-175 24-195 (201)
9 1wms_A RAB-9, RAB9, RAS-relate 100.0 3.3E-31 1.1E-35 191.1 20.2 165 11-175 5-176 (177)
10 1r2q_A RAS-related protein RAB 100.0 1.9E-31 6.3E-36 191.0 18.3 163 10-172 3-168 (170)
11 1z08_A RAS-related protein RAB 100.0 3.5E-31 1.2E-35 189.7 19.3 163 11-173 4-169 (170)
12 3reg_A RHO-like small GTPase; 100.0 4.6E-31 1.6E-35 193.4 20.1 167 9-176 19-191 (194)
13 2a5j_A RAS-related protein RAB 100.0 4.7E-31 1.6E-35 192.9 20.0 166 8-173 16-184 (191)
14 1z0f_A RAB14, member RAS oncog 100.0 3.1E-31 1.1E-35 191.4 18.8 164 10-173 12-178 (179)
15 1ek0_A Protein (GTP-binding pr 100.0 2.1E-31 7.2E-36 190.7 17.7 161 12-172 2-168 (170)
16 3tkl_A RAS-related protein RAB 100.0 7E-31 2.4E-35 192.5 20.5 167 9-175 12-181 (196)
17 2efe_B Small GTP-binding prote 100.0 4.4E-31 1.5E-35 191.1 18.7 164 10-173 9-175 (181)
18 2gf9_A RAS-related protein RAB 100.0 1.7E-30 5.9E-35 189.6 21.7 163 11-173 20-185 (189)
19 2ew1_A RAS-related protein RAB 100.0 5.4E-31 1.9E-35 194.1 19.1 163 11-173 24-189 (201)
20 1z0j_A RAB-22, RAS-related pro 100.0 7E-31 2.4E-35 188.1 19.2 162 11-172 4-168 (170)
21 2fg5_A RAB-22B, RAS-related pr 100.0 3.7E-31 1.3E-35 193.7 18.0 164 11-174 21-187 (192)
22 3t5g_A GTP-binding protein RHE 100.0 7.9E-31 2.7E-35 189.9 19.5 164 11-175 4-171 (181)
23 2hxs_A RAB-26, RAS-related pro 100.0 3.4E-31 1.2E-35 191.2 17.4 166 10-175 3-175 (178)
24 1g16_A RAS-related protein SEC 100.0 6.4E-31 2.2E-35 188.3 18.2 163 12-174 2-166 (170)
25 3c5c_A RAS-like protein 12; GD 100.0 8.5E-31 2.9E-35 191.0 18.8 163 9-173 17-186 (187)
26 2atx_A Small GTP binding prote 100.0 1.3E-30 4.6E-35 190.8 19.7 162 11-173 16-193 (194)
27 2p5s_A RAS and EF-hand domain 100.0 3.5E-31 1.2E-35 194.8 16.5 166 8-173 23-197 (199)
28 2oil_A CATX-8, RAS-related pro 100.0 1.5E-30 5.2E-35 190.4 19.6 164 10-173 22-188 (193)
29 3ihw_A Centg3; RAS, centaurin, 100.0 8.4E-31 2.9E-35 190.5 18.1 161 7-174 14-181 (184)
30 2g6b_A RAS-related protein RAB 100.0 2.7E-30 9.2E-35 186.8 20.6 165 10-174 7-175 (180)
31 4djt_A GTP-binding nuclear pro 100.0 6.4E-31 2.2E-35 196.0 17.6 177 9-185 7-187 (218)
32 2fu5_C RAS-related protein RAB 100.0 4.1E-31 1.4E-35 191.8 16.2 162 12-173 7-171 (183)
33 1u8z_A RAS-related protein RAL 100.0 1.1E-30 3.8E-35 186.5 18.1 162 11-173 2-167 (168)
34 1c1y_A RAS-related protein RAP 100.0 1.7E-30 5.7E-35 185.6 18.9 160 12-172 2-166 (167)
35 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.6E-30 5.6E-35 188.9 19.1 165 10-175 2-182 (186)
36 1m7b_A RND3/RHOE small GTP-bin 100.0 1.1E-30 3.7E-35 189.9 18.2 163 10-173 4-183 (184)
37 1vg8_A RAS-related protein RAB 100.0 2.9E-30 9.8E-35 190.9 20.6 165 10-174 5-176 (207)
38 1zbd_A Rabphilin-3A; G protein 100.0 2.1E-30 7.3E-35 191.1 19.8 163 12-174 7-172 (203)
39 1z06_A RAS-related protein RAB 100.0 8.4E-31 2.9E-35 191.2 17.5 165 8-172 15-187 (189)
40 2fn4_A P23, RAS-related protei 100.0 1.5E-30 5E-35 188.2 18.5 165 9-174 5-173 (181)
41 2bme_A RAB4A, RAS-related prot 100.0 2.3E-30 7.9E-35 188.2 19.4 164 11-174 8-174 (186)
42 2bcg_Y Protein YP2, GTP-bindin 100.0 3.5E-30 1.2E-34 190.4 20.6 165 11-175 6-173 (206)
43 2j0v_A RAC-like GTP-binding pr 100.0 1.5E-30 5.1E-35 193.2 18.6 165 11-176 7-183 (212)
44 2gco_A H9, RHO-related GTP-bin 100.0 2.9E-30 9.8E-35 190.2 19.8 165 8-173 20-200 (201)
45 3cbq_A GTP-binding protein REM 100.0 1.3E-30 4.4E-35 191.2 17.9 166 9-174 19-189 (195)
46 3cpj_B GTP-binding protein YPT 100.0 2.1E-30 7E-35 194.0 19.1 169 11-179 11-182 (223)
47 3q85_A GTP-binding protein REM 100.0 2E-30 6.9E-35 185.6 18.2 161 13-173 2-167 (169)
48 2y8e_A RAB-protein 6, GH09086P 100.0 1.7E-30 5.7E-35 187.6 17.8 162 11-172 12-176 (179)
49 2q3h_A RAS homolog gene family 100.0 3.3E-30 1.1E-34 189.8 19.6 165 8-173 15-195 (201)
50 3dz8_A RAS-related protein RAB 100.0 7.3E-32 2.5E-36 197.2 10.6 165 10-174 20-187 (191)
51 2il1_A RAB12; G-protein, GDP, 100.0 1.3E-30 4.4E-35 190.8 17.2 164 10-173 23-190 (192)
52 2o52_A RAS-related protein RAB 100.0 1.6E-30 5.3E-35 191.5 17.6 164 11-174 23-189 (200)
53 1gwn_A RHO-related GTP-binding 100.0 1.5E-30 5.1E-35 192.4 17.4 163 10-173 25-204 (205)
54 2j1l_A RHO-related GTP-binding 100.0 2.2E-30 7.7E-35 192.7 18.3 166 9-175 30-211 (214)
55 3oes_A GTPase rhebl1; small GT 100.0 1.4E-30 4.8E-35 191.9 16.9 167 9-176 20-190 (201)
56 2fv8_A H6, RHO-related GTP-bin 100.0 5.8E-30 2E-34 189.4 20.0 166 8-174 20-201 (207)
57 1ky3_A GTP-binding protein YPT 100.0 2.8E-30 9.5E-35 186.9 17.8 164 10-173 5-178 (182)
58 3bc1_A RAS-related protein RAB 100.0 5.2E-30 1.8E-34 187.4 19.2 164 10-173 8-185 (195)
59 2nzj_A GTP-binding protein REM 100.0 3.8E-30 1.3E-34 185.1 18.1 162 11-173 2-169 (175)
60 2bov_A RAla, RAS-related prote 100.0 4.3E-30 1.5E-34 189.7 18.8 166 7-173 8-177 (206)
61 2a9k_A RAS-related protein RAL 100.0 4.1E-30 1.4E-34 186.8 18.1 165 8-173 13-181 (187)
62 3clv_A RAB5 protein, putative; 100.0 8.5E-30 2.9E-34 187.7 19.9 162 11-173 5-204 (208)
63 3t1o_A Gliding protein MGLA; G 100.0 1.7E-31 5.9E-36 195.8 10.5 164 10-174 11-193 (198)
64 4dsu_A GTPase KRAS, isoform 2B 100.0 8.2E-30 2.8E-34 185.6 19.2 163 11-174 2-167 (189)
65 3cph_A RAS-related protein SEC 100.0 1E-29 3.4E-34 188.7 19.8 164 10-173 17-182 (213)
66 2iwr_A Centaurin gamma 1; ANK 100.0 6.7E-30 2.3E-34 184.5 18.3 156 11-173 5-169 (178)
67 3bwd_D RAC-like GTP-binding pr 100.0 8.1E-31 2.8E-35 189.9 13.5 163 10-173 5-181 (182)
68 3q72_A GTP-binding protein RAD 100.0 7.9E-30 2.7E-34 182.0 18.4 160 12-173 1-164 (166)
69 3con_A GTPase NRAS; structural 100.0 1.5E-29 5.1E-34 184.6 20.2 167 6-173 14-183 (190)
70 1kao_A RAP2A; GTP-binding prot 100.0 3.1E-30 1.1E-34 184.0 16.2 160 12-172 2-165 (167)
71 4bas_A ADP-ribosylation factor 100.0 6.4E-30 2.2E-34 187.8 18.3 164 7-174 11-190 (199)
72 2ce2_X GTPase HRAS; signaling 100.0 1.5E-29 5.1E-34 180.1 19.2 161 12-173 2-165 (166)
73 2yc2_C IFT27, small RAB-relate 100.0 8.3E-31 2.8E-35 193.7 12.9 163 11-173 18-192 (208)
74 2atv_A RERG, RAS-like estrogen 100.0 5.9E-30 2E-34 187.8 16.9 163 10-174 25-192 (196)
75 4gzl_A RAS-related C3 botulinu 100.0 6.5E-30 2.2E-34 188.8 17.0 162 9-171 26-203 (204)
76 1ksh_A ARF-like protein 2; sma 100.0 2.2E-29 7.4E-34 183.2 18.3 159 11-174 16-181 (186)
77 1zj6_A ADP-ribosylation factor 100.0 7.9E-30 2.7E-34 185.7 15.4 161 10-175 13-180 (187)
78 2gf0_A GTP-binding protein DI- 100.0 2.1E-29 7.3E-34 185.0 17.2 164 11-175 6-173 (199)
79 2h57_A ADP-ribosylation factor 100.0 2E-29 6.8E-34 184.1 16.8 161 8-172 16-186 (190)
80 2f7s_A C25KG, RAS-related prot 100.0 4.4E-30 1.5E-34 191.3 13.6 163 11-173 23-199 (217)
81 2erx_A GTP-binding protein DI- 100.0 2.5E-29 8.7E-34 180.1 17.0 160 12-172 2-166 (172)
82 2h17_A ADP-ribosylation factor 100.0 9E-30 3.1E-34 184.5 14.6 158 8-170 16-180 (181)
83 1zd9_A ADP-ribosylation factor 100.0 1.4E-29 4.8E-34 184.6 15.5 161 9-173 18-185 (188)
84 1f6b_A SAR1; gtpases, N-termin 100.0 1.7E-29 6E-34 185.7 15.8 157 9-170 21-196 (198)
85 2g3y_A GTP-binding protein GEM 100.0 5E-29 1.7E-33 184.6 18.1 163 10-173 34-203 (211)
86 3l0i_B RAS-related protein RAB 100.0 1.7E-31 5.8E-36 196.5 4.7 165 9-173 29-196 (199)
87 1m2o_B GTP-binding protein SAR 100.0 5E-29 1.7E-33 182.1 17.0 157 9-170 19-189 (190)
88 1upt_A ARL1, ADP-ribosylation 100.0 1.6E-28 5.6E-33 175.9 19.4 159 11-174 5-170 (171)
89 2b6h_A ADP-ribosylation factor 100.0 8E-29 2.7E-33 181.3 15.5 160 8-172 24-190 (192)
90 2cjw_A GTP-binding protein GEM 100.0 3.6E-28 1.2E-32 177.8 18.8 163 10-173 3-172 (192)
91 1fzq_A ADP-ribosylation factor 100.0 6.6E-29 2.2E-33 180.1 14.7 158 11-173 14-178 (181)
92 1r8s_A ADP-ribosylation factor 100.0 8.9E-29 3.1E-33 176.2 14.6 155 14-173 1-162 (164)
93 1moz_A ARL1, ADP-ribosylation 100.0 9E-29 3.1E-33 179.3 14.7 158 11-173 16-180 (183)
94 2x77_A ADP-ribosylation factor 100.0 2.2E-28 7.4E-33 178.4 16.0 159 11-174 20-185 (189)
95 2zej_A Dardarin, leucine-rich 100.0 5.1E-29 1.7E-33 181.1 12.1 162 13-174 2-179 (184)
96 3llu_A RAS-related GTP-binding 100.0 1.7E-28 5.7E-33 180.1 13.8 162 6-171 13-195 (196)
97 2wkq_A NPH1-1, RAS-related C3 100.0 3E-27 1E-31 186.6 19.1 163 11-174 153-331 (332)
98 2f9l_A RAB11B, member RAS onco 100.0 9.1E-27 3.1E-31 171.2 20.2 162 12-173 4-168 (199)
99 3th5_A RAS-related C3 botulinu 99.9 3.3E-30 1.1E-34 190.3 0.0 162 9-171 26-203 (204)
100 1oix_A RAS-related protein RAB 100.0 2.8E-26 9.6E-31 167.6 19.5 160 12-171 28-190 (191)
101 3o47_A ADP-ribosylation factor 99.9 3.7E-27 1.3E-31 185.7 15.3 161 9-174 161-328 (329)
102 3c5h_A Glucocorticoid receptor 99.9 2.5E-27 8.7E-32 180.6 11.3 164 9-172 15-254 (255)
103 2fh5_B SR-beta, signal recogni 99.9 1.9E-26 6.6E-31 171.2 14.9 158 10-170 4-213 (214)
104 2lkc_A Translation initiation 99.9 3.7E-26 1.3E-30 164.7 15.8 160 9-174 4-172 (178)
105 2wji_A Ferrous iron transport 99.9 1.7E-26 6E-31 164.8 13.9 153 12-171 2-163 (165)
106 3lvq_E ARF-GAP with SH3 domain 99.9 4.3E-26 1.5E-30 189.3 17.0 163 8-175 317-486 (497)
107 3iev_A GTP-binding protein ERA 99.9 4.4E-26 1.5E-30 178.1 14.9 170 7-179 4-188 (308)
108 2qu8_A Putative nucleolar GTP- 99.9 1.2E-25 4.2E-30 168.6 15.3 162 10-173 26-205 (228)
109 3r7w_A Gtpase1, GTP-binding pr 99.9 8.9E-26 3E-30 176.3 14.4 158 12-173 2-181 (307)
110 1svi_A GTP-binding protein YSX 99.9 1.7E-25 5.9E-30 163.6 13.3 157 10-172 20-194 (195)
111 2wjg_A FEOB, ferrous iron tran 99.9 2.4E-25 8.1E-30 162.0 13.6 159 10-175 4-171 (188)
112 2gj8_A MNME, tRNA modification 99.9 6E-26 2.1E-30 163.1 10.0 152 12-172 3-165 (172)
113 2dyk_A GTP-binding protein; GT 99.9 2E-25 6.7E-30 158.3 11.9 151 14-171 2-160 (161)
114 3a1s_A Iron(II) transport prot 99.9 2E-25 6.7E-30 170.2 12.2 155 11-172 3-166 (258)
115 3r7w_B Gtpase2, GTP-binding pr 99.9 5.1E-26 1.7E-30 176.5 8.4 152 15-173 1-174 (331)
116 1wf3_A GTP-binding protein; GT 99.9 5.3E-25 1.8E-29 171.1 14.2 164 11-178 5-178 (301)
117 3dpu_A RAB family protein; roc 99.9 2.3E-25 7.8E-30 186.3 12.3 165 9-176 37-211 (535)
118 3pqc_A Probable GTP-binding pr 99.9 1.4E-24 4.9E-29 158.5 14.3 159 8-173 18-194 (195)
119 2cxx_A Probable GTP-binding pr 99.9 2.4E-25 8.2E-30 162.1 8.6 155 14-175 2-186 (190)
120 3i8s_A Ferrous iron transport 99.9 2E-25 6.9E-30 171.6 8.6 156 12-174 2-170 (274)
121 4dhe_A Probable GTP-binding pr 99.9 9E-25 3.1E-29 163.2 11.5 161 10-173 26-211 (223)
122 3b1v_A Ferrous iron uptake tra 99.9 5E-25 1.7E-29 168.9 10.3 151 13-171 3-162 (272)
123 3gee_A MNME, tRNA modification 99.9 8E-24 2.7E-28 173.5 17.2 158 12-172 232-397 (476)
124 3k53_A Ferrous iron transport 99.9 3.6E-24 1.2E-28 164.5 13.7 158 12-175 2-168 (271)
125 3iby_A Ferrous iron transport 99.9 1.3E-24 4.5E-29 165.3 10.5 150 14-170 2-164 (256)
126 3qq5_A Small GTP-binding prote 99.9 4.5E-24 1.6E-28 172.3 10.2 159 9-174 30-197 (423)
127 1ega_A Protein (GTP-binding pr 99.9 2E-22 6.9E-27 156.8 16.2 163 11-178 6-180 (301)
128 2e87_A Hypothetical protein PH 99.9 1.5E-22 5.1E-27 161.3 15.3 160 11-172 165-335 (357)
129 1nrj_B SR-beta, signal recogni 99.9 4.6E-24 1.6E-28 158.8 5.0 143 8-159 7-170 (218)
130 1mky_A Probable GTP-binding pr 99.9 1.4E-22 4.9E-27 165.5 11.2 152 14-173 2-166 (439)
131 3geh_A MNME, tRNA modification 99.9 1.6E-22 5.4E-27 165.3 10.7 153 12-174 223-385 (462)
132 1xzp_A Probable tRNA modificat 99.9 6.6E-23 2.3E-27 168.2 8.2 153 13-172 243-404 (482)
133 1lnz_A SPO0B-associated GTP-bi 99.9 1.1E-22 3.9E-27 160.2 9.1 158 15-176 160-333 (342)
134 2hjg_A GTP-binding protein ENG 99.9 1.2E-22 4E-27 165.9 8.5 159 11-173 173-349 (436)
135 2xtp_A GTPase IMAP family memb 99.9 6.2E-22 2.1E-26 151.2 11.6 167 9-176 18-211 (260)
136 3sjy_A Translation initiation 99.9 4E-21 1.4E-25 155.4 16.9 162 9-172 4-191 (403)
137 2hjg_A GTP-binding protein ENG 99.9 7.2E-23 2.5E-27 167.1 6.4 154 13-173 3-165 (436)
138 1cip_A Protein (guanine nucleo 99.9 1.6E-21 5.4E-26 154.2 13.6 114 60-173 191-344 (353)
139 3lxw_A GTPase IMAP family memb 99.9 1.7E-21 5.7E-26 147.7 12.0 169 8-178 16-213 (247)
140 4dcu_A GTP-binding protein ENG 99.9 5.8E-22 2E-26 162.6 10.0 160 10-173 192-369 (456)
141 3lxx_A GTPase IMAP family memb 99.9 1.9E-21 6.6E-26 146.7 12.0 167 8-176 24-217 (239)
142 3cb4_D GTP-binding protein LEP 99.9 1.3E-21 4.6E-26 164.0 11.5 158 12-172 3-181 (599)
143 3izy_P Translation initiation 99.9 1.6E-22 5.5E-27 167.3 4.6 157 12-172 3-167 (537)
144 3ohm_A Guanine nucleotide-bind 99.9 6.5E-21 2.2E-25 148.7 12.9 116 59-174 164-319 (327)
145 3tr5_A RF-3, peptide chain rel 99.9 2.8E-21 9.5E-26 160.3 10.8 119 11-132 11-149 (528)
146 2ywe_A GTP-binding protein LEP 99.9 4.4E-21 1.5E-25 160.6 12.0 158 12-172 5-183 (600)
147 3p26_A Elongation factor 1 alp 99.8 3.7E-21 1.3E-25 158.9 11.0 152 11-162 31-227 (483)
148 2ged_A SR-beta, signal recogni 99.8 2.3E-21 7.9E-26 141.4 7.9 116 10-134 45-173 (193)
149 2xtz_A Guanine nucleotide-bind 99.8 1E-20 3.4E-25 149.6 12.0 114 60-173 181-345 (354)
150 1mky_A Probable GTP-binding pr 99.8 1.3E-20 4.6E-25 153.9 12.9 158 12-173 179-355 (439)
151 1zcb_A G alpha I/13; GTP-bindi 99.8 2.9E-20 1E-24 147.5 14.2 114 60-173 199-353 (362)
152 4dcu_A GTP-binding protein ENG 99.8 1.6E-21 5.5E-26 160.0 7.1 156 11-172 21-184 (456)
153 1s0u_A EIF-2-gamma, translatio 99.8 9.4E-20 3.2E-24 147.5 16.3 161 11-172 6-197 (408)
154 3t5d_A Septin-7; GTP-binding p 99.8 8.2E-21 2.8E-25 146.1 8.7 158 11-171 6-202 (274)
155 3j2k_7 ERF3, eukaryotic polype 99.8 7.2E-20 2.5E-24 149.3 14.6 157 9-165 13-217 (439)
156 3izq_1 HBS1P, elongation facto 99.8 2.4E-20 8.1E-25 157.4 11.4 154 10-163 164-362 (611)
157 1wb1_A Translation elongation 99.8 3.6E-20 1.2E-24 152.6 12.2 162 8-172 14-188 (482)
158 1jny_A EF-1-alpha, elongation 99.8 1.8E-21 6.2E-26 158.7 4.5 153 11-164 4-204 (435)
159 2qtf_A Protein HFLX, GTP-bindi 99.8 5.5E-20 1.9E-24 146.2 12.8 157 14-175 179-356 (364)
160 1kk1_A EIF2gamma; initiation o 99.8 2.1E-19 7.3E-24 145.6 16.5 163 9-172 6-199 (410)
161 4fid_A G protein alpha subunit 99.8 1.1E-20 3.8E-25 147.8 8.3 118 56-173 155-328 (340)
162 1d2e_A Elongation factor TU (E 99.8 3.1E-20 1.1E-24 149.8 10.5 158 12-172 2-194 (397)
163 2c78_A Elongation factor TU-A; 99.8 2.4E-20 8.1E-25 151.0 8.9 159 10-171 8-210 (405)
164 2qag_A Septin-2, protein NEDD5 99.8 1.3E-20 4.4E-25 150.0 7.2 165 11-179 35-239 (361)
165 1g7s_A Translation initiation 99.8 2.2E-19 7.5E-24 150.7 14.8 156 11-172 3-217 (594)
166 1azs_C GS-alpha; complex (lyas 99.8 1E-19 3.5E-24 145.5 12.1 113 61-173 216-385 (402)
167 1zo1_I IF2, translation initia 99.8 1.1E-20 3.8E-25 155.1 6.1 153 12-169 3-163 (501)
168 1zun_B Sulfate adenylate trans 99.8 1.7E-19 5.7E-24 147.2 12.4 151 11-163 22-214 (434)
169 1pui_A ENGB, probable GTP-bind 99.8 1.8E-19 6E-24 133.2 11.0 159 10-174 23-200 (210)
170 2elf_A Protein translation elo 99.8 1.5E-19 5E-24 144.2 11.0 143 15-172 23-179 (370)
171 1r5b_A Eukaryotic peptide chai 99.8 5.2E-20 1.8E-24 151.2 7.5 155 10-164 40-243 (467)
172 2aka_B Dynamin-1; fusion prote 99.8 1.1E-19 3.7E-24 141.4 8.5 159 10-170 23-250 (299)
173 1f60_A Elongation factor EEF1A 99.8 1.4E-19 4.9E-24 148.3 7.6 151 11-163 5-202 (458)
174 3mca_A HBS1, elongation factor 99.8 8.6E-20 2.9E-24 153.5 6.3 151 10-161 174-371 (592)
175 3avx_A Elongation factor TS, e 99.8 4.6E-19 1.6E-23 155.7 10.9 159 10-171 293-484 (1289)
176 1dar_A EF-G, elongation factor 99.8 1E-18 3.5E-23 149.6 12.7 127 1-131 1-143 (691)
177 2dy1_A Elongation factor G; tr 99.8 2.2E-18 7.6E-23 147.0 13.0 117 11-130 7-139 (665)
178 1udx_A The GTP-binding protein 99.8 4.8E-18 1.6E-22 136.8 13.7 159 15-176 159-328 (416)
179 2h5e_A Peptide chain release f 99.8 5.6E-19 1.9E-23 146.7 7.9 166 1-169 1-191 (529)
180 3def_A T7I23.11 protein; chlor 99.8 3.9E-18 1.3E-22 130.2 10.6 118 11-130 34-164 (262)
181 2qnr_A Septin-2, protein NEDD5 99.8 8.7E-19 3E-23 136.2 6.9 167 11-181 16-222 (301)
182 1wxq_A GTP-binding protein; st 99.8 3.8E-19 1.3E-23 142.9 4.7 83 14-98 1-114 (397)
183 1h65_A Chloroplast outer envel 99.7 7.5E-18 2.6E-22 129.2 10.4 119 11-131 37-168 (270)
184 2j69_A Bacterial dynamin-like 99.7 2.8E-17 9.7E-22 140.7 13.5 109 63-173 175-325 (695)
185 2xex_A Elongation factor G; GT 99.7 2.6E-17 9E-22 140.9 12.8 119 10-131 7-141 (693)
186 1jwy_B Dynamin A GTPase domain 99.7 6.2E-17 2.1E-21 126.7 13.0 113 62-176 131-265 (315)
187 2rdo_7 EF-G, elongation factor 99.7 7.7E-17 2.6E-21 138.2 14.6 118 11-131 8-148 (704)
188 2qag_C Septin-7; cell cycle, c 99.7 1.1E-16 3.8E-21 129.0 10.5 158 10-170 28-224 (418)
189 3vqt_A RF-3, peptide chain rel 99.7 2.4E-16 8.1E-21 131.5 12.8 117 12-131 30-166 (548)
190 1u0l_A Probable GTPase ENGC; p 99.7 2.3E-17 7.7E-22 128.3 6.0 133 28-168 32-168 (301)
191 2x2e_A Dynamin-1; nitration, h 99.7 4.3E-17 1.5E-21 129.6 6.1 158 10-169 28-254 (353)
192 3t34_A Dynamin-related protein 99.7 6E-17 2.1E-21 129.1 6.9 153 12-166 33-254 (360)
193 3p32_A Probable GTPase RV1496/ 99.7 1.1E-16 3.8E-21 127.2 7.1 103 61-173 171-284 (355)
194 2wsm_A Hydrogenase expression/ 99.6 8.4E-16 2.9E-20 114.2 8.7 152 12-173 29-214 (221)
195 2www_A Methylmalonic aciduria 99.6 5E-16 1.7E-20 123.1 5.5 102 61-172 166-278 (349)
196 1n0u_A EF-2, elongation factor 99.6 1.6E-15 5.5E-20 132.4 8.7 117 11-130 17-163 (842)
197 1jal_A YCHF protein; nucleotid 99.6 2.6E-14 8.9E-19 112.9 14.7 82 14-97 3-108 (363)
198 2hf9_A Probable hydrogenase ni 99.6 1E-14 3.4E-19 108.8 10.6 152 11-172 36-223 (226)
199 2p67_A LAO/AO transport system 99.6 3E-15 1E-19 118.3 7.4 102 61-172 148-260 (341)
200 2qpt_A EH domain-containing pr 99.6 2.6E-15 8.9E-20 125.4 7.3 118 12-132 64-233 (550)
201 3j25_A Tetracycline resistance 99.6 9.2E-16 3.1E-20 130.3 3.7 115 14-131 3-133 (638)
202 4fn5_A EF-G 1, elongation fact 99.5 1.1E-13 3.7E-18 119.1 12.8 117 12-131 12-151 (709)
203 2dby_A GTP-binding protein; GD 99.5 7.3E-14 2.5E-18 110.9 10.5 82 14-97 2-111 (368)
204 1yrb_A ATP(GTP)binding protein 99.5 5.6E-14 1.9E-18 107.0 8.9 113 62-175 109-259 (262)
205 3zvr_A Dynamin-1; hydrolase, D 99.5 1.7E-13 5.7E-18 117.3 12.2 165 10-176 48-284 (772)
206 4a9a_A Ribosome-interacting GT 99.5 1.9E-13 6.4E-18 108.5 11.2 115 14-130 73-195 (376)
207 2qm8_A GTPase/ATPase; G protei 99.4 1.8E-12 6.2E-17 102.1 8.8 102 61-172 147-260 (337)
208 2yv5_A YJEQ protein; hydrolase 99.3 7.8E-12 2.7E-16 97.1 9.8 95 72-168 66-164 (302)
209 2ohf_A Protein OLA1, GTP-bindi 99.3 3E-12 1E-16 102.1 5.3 88 12-101 21-132 (396)
210 3l82_B F-box only protein 4; T 99.3 6.5E-12 2.2E-16 90.7 6.0 103 70-173 110-223 (227)
211 3l2o_B F-box only protein 4; s 99.1 9.7E-11 3.3E-15 88.7 6.3 104 69-173 194-308 (312)
212 3ec1_A YQEH GTPase; atnos1, at 99.1 3.4E-11 1.2E-15 96.0 2.1 138 13-156 162-314 (369)
213 3h2y_A GTPase family protein; 99.0 4.9E-11 1.7E-15 95.0 2.5 121 13-139 160-295 (368)
214 2qag_B Septin-6, protein NEDD5 99.0 2.2E-09 7.4E-14 86.5 10.4 117 12-132 41-191 (427)
215 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 1.4E-09 4.6E-14 87.0 7.4 85 12-97 19-127 (392)
216 3sop_A Neuronal-specific septi 98.9 4.7E-09 1.6E-13 80.1 9.7 23 13-35 2-24 (270)
217 3tif_A Uncharacterized ABC tra 98.9 2.2E-09 7.6E-14 80.2 7.3 48 157-209 146-193 (235)
218 4g1u_C Hemin import ATP-bindin 98.9 1.4E-09 4.9E-14 82.7 5.6 48 158-210 143-196 (266)
219 3tui_C Methionine import ATP-b 98.9 1.7E-09 6E-14 85.4 6.2 49 157-210 164-212 (366)
220 1vpl_A ABC transporter, ATP-bi 98.9 4.4E-09 1.5E-13 79.6 8.1 50 157-211 147-196 (256)
221 2j37_W Signal recognition part 98.9 3.9E-09 1.3E-13 87.0 8.0 152 11-170 99-310 (504)
222 2pcj_A ABC transporter, lipopr 98.9 3.4E-09 1.2E-13 78.7 6.9 50 157-211 141-190 (224)
223 3gfo_A Cobalt import ATP-bindi 98.9 2.3E-09 7.7E-14 81.9 6.0 47 157-208 144-190 (275)
224 1sgw_A Putative ABC transporte 98.9 1.2E-08 4E-13 75.1 9.2 48 157-209 134-181 (214)
225 1g6h_A High-affinity branched- 98.9 9.3E-09 3.2E-13 77.9 8.7 50 157-211 154-203 (257)
226 2olj_A Amino acid ABC transpor 98.9 9E-09 3.1E-13 78.1 8.6 50 157-211 160-209 (263)
227 3rlf_A Maltose/maltodextrin im 98.8 1.5E-08 5.3E-13 80.5 9.9 49 157-210 134-182 (381)
228 1tq4_A IIGP1, interferon-induc 98.8 1.2E-08 4E-13 82.2 8.7 160 12-178 68-258 (413)
229 2nq2_C Hypothetical ABC transp 98.8 1.6E-08 5.3E-13 76.4 8.7 49 157-210 129-177 (253)
230 1b0u_A Histidine permease; ABC 98.8 1.7E-08 5.8E-13 76.7 8.7 50 157-211 154-203 (262)
231 1z47_A CYSA, putative ABC-tran 98.8 2.9E-08 9.9E-13 78.3 10.2 49 157-210 146-194 (355)
232 2onk_A Molybdate/tungstate ABC 98.8 2.5E-09 8.4E-14 80.2 3.8 48 157-209 127-174 (240)
233 3fvq_A Fe(3+) IONS import ATP- 98.8 8.5E-09 2.9E-13 81.4 6.8 47 157-208 139-185 (359)
234 1ji0_A ABC transporter; ATP bi 98.8 2E-08 7E-13 75.3 8.5 50 157-211 140-189 (240)
235 2yz2_A Putative ABC transporte 98.8 1.2E-08 4.2E-13 77.6 7.2 51 156-211 138-188 (266)
236 2it1_A 362AA long hypothetical 98.8 3.6E-08 1.2E-12 78.0 10.0 48 157-209 134-181 (362)
237 2ihy_A ABC transporter, ATP-bi 98.8 1.6E-08 5.5E-13 77.4 7.5 50 157-211 162-211 (279)
238 1puj_A YLQF, conserved hypothe 98.8 9.9E-09 3.4E-13 78.8 6.1 59 11-73 118-176 (282)
239 1g29_1 MALK, maltose transport 98.8 6.4E-08 2.2E-12 76.9 11.0 48 157-209 140-187 (372)
240 1v43_A Sugar-binding transport 98.8 4E-08 1.4E-12 78.0 9.6 52 152-210 139-190 (372)
241 2yyz_A Sugar ABC transporter, 98.8 4.3E-08 1.5E-12 77.5 9.7 48 157-209 134-181 (359)
242 2pjz_A Hypothetical protein ST 98.7 2.7E-08 9.2E-13 75.5 7.7 48 157-209 129-176 (263)
243 3h2y_A GTPase family protein; 98.7 1.5E-08 5E-13 80.7 6.5 109 72-186 56-172 (368)
244 1oxx_K GLCV, glucose, ABC tran 98.7 2.3E-08 7.8E-13 79.0 7.5 48 157-209 141-188 (353)
245 3nh6_A ATP-binding cassette SU 98.7 6.3E-09 2.2E-13 80.6 3.8 49 157-210 191-239 (306)
246 1puj_A YLQF, conserved hypothe 98.7 3.5E-08 1.2E-12 75.7 7.9 100 68-172 5-105 (282)
247 3cnl_A YLQF, putative uncharac 98.7 7.6E-09 2.6E-13 78.6 3.8 57 14-74 100-156 (262)
248 3d31_A Sulfate/molybdate ABC t 98.7 3E-08 1E-12 78.1 7.2 48 157-209 128-175 (348)
249 2qi9_C Vitamin B12 import ATP- 98.7 2.8E-08 9.6E-13 74.8 6.7 50 157-211 127-183 (249)
250 2ff7_A Alpha-hemolysin translo 98.7 5.4E-08 1.8E-12 73.2 8.1 48 157-209 146-193 (247)
251 2d2e_A SUFC protein; ABC-ATPas 98.7 8E-09 2.7E-13 77.9 3.5 49 158-211 145-193 (250)
252 2zu0_C Probable ATP-dependent 98.7 4.4E-08 1.5E-12 74.6 7.4 50 157-211 165-214 (267)
253 2ixe_A Antigen peptide transpo 98.6 2.7E-07 9.3E-12 70.3 10.0 49 156-209 156-204 (271)
254 3ec1_A YQEH GTPase; atnos1, at 98.6 5.3E-08 1.8E-12 77.6 5.9 110 71-186 57-174 (369)
255 3ozx_A RNAse L inhibitor; ATP 98.6 7.6E-08 2.6E-12 80.2 5.8 47 158-209 140-186 (538)
256 2cbz_A Multidrug resistance-as 98.5 1.6E-07 5.6E-12 70.2 6.9 45 156-205 127-171 (237)
257 2pze_A Cystic fibrosis transme 98.5 5.6E-07 1.9E-11 66.9 9.1 43 157-204 131-173 (229)
258 3dm5_A SRP54, signal recogniti 98.5 3.6E-07 1.2E-11 73.9 8.4 141 12-161 99-279 (443)
259 1mv5_A LMRA, multidrug resista 98.5 1.2E-07 4.2E-12 71.1 5.2 47 157-208 140-186 (243)
260 3b5x_A Lipid A export ATP-bind 98.5 5E-07 1.7E-11 76.2 9.2 47 158-209 482-528 (582)
261 2ghi_A Transport protein; mult 98.4 3E-07 1E-11 69.7 6.3 48 157-209 156-203 (260)
262 3bk7_A ABC transporter ATP-bin 98.4 3.6E-07 1.2E-11 77.2 7.3 46 158-208 473-518 (607)
263 3ozx_A RNAse L inhibitor; ATP 98.4 4.4E-07 1.5E-11 75.7 7.5 47 158-209 387-433 (538)
264 3kl4_A SRP54, signal recogniti 98.4 2.1E-07 7.2E-12 75.2 4.9 91 61-160 179-277 (433)
265 2v3c_C SRP54, signal recogniti 98.4 1E-07 3.6E-12 77.2 2.8 84 61-152 180-271 (432)
266 3j16_B RLI1P; ribosome recycli 98.4 7.5E-08 2.6E-12 81.3 1.9 46 158-208 469-514 (608)
267 1f5n_A Interferon-induced guan 98.4 5.1E-07 1.8E-11 75.7 6.7 65 10-74 35-103 (592)
268 3j16_B RLI1P; ribosome recycli 98.4 1.7E-06 5.6E-11 73.1 9.8 52 156-212 221-272 (608)
269 3b60_A Lipid A export ATP-bind 98.4 7.5E-07 2.6E-11 75.2 7.7 48 157-209 481-528 (582)
270 3qf4_A ABC transporter, ATP-bi 98.4 1.8E-07 6.3E-12 78.9 3.9 49 156-209 479-527 (587)
271 4a82_A Cystic fibrosis transme 98.4 8.7E-07 3E-11 74.7 7.8 48 157-209 478-525 (578)
272 1yqt_A RNAse L inhibitor; ATP- 98.3 1.8E-06 6.3E-11 72.0 9.1 46 158-208 403-448 (538)
273 4gp7_A Metallophosphoesterase; 98.3 1.8E-07 6.1E-12 66.4 2.6 49 158-211 85-149 (171)
274 1yqt_A RNAse L inhibitor; ATP- 98.3 4E-07 1.4E-11 76.0 4.9 49 158-211 160-208 (538)
275 3qf4_B Uncharacterized ABC tra 98.3 1.4E-06 4.8E-11 73.7 8.1 48 157-209 492-539 (598)
276 4f4c_A Multidrug resistance pr 98.3 8E-07 2.7E-11 81.5 7.0 47 158-209 1219-1265(1321)
277 2bbs_A Cystic fibrosis transme 98.3 3.2E-06 1.1E-10 65.0 9.3 43 157-204 160-202 (290)
278 2yl4_A ATP-binding cassette SU 98.3 1.4E-06 4.9E-11 73.6 7.9 48 157-209 484-531 (595)
279 3bk7_A ABC transporter ATP-bin 98.3 5E-07 1.7E-11 76.4 4.5 49 158-211 230-278 (607)
280 3gd7_A Fusion complex of cysti 98.3 1.8E-07 6E-12 74.8 1.4 48 157-209 156-203 (390)
281 4f4c_A Multidrug resistance pr 98.3 4.6E-07 1.6E-11 83.0 4.1 48 157-209 555-602 (1321)
282 3cnl_A YLQF, putative uncharac 98.2 6.8E-07 2.3E-11 67.8 3.8 93 69-169 4-97 (262)
283 3szr_A Interferon-induced GTP- 98.2 1.9E-06 6.6E-11 73.0 6.8 21 15-35 47-67 (608)
284 3e70_C DPA, signal recognition 98.2 6.7E-07 2.3E-11 70.0 2.9 90 63-161 213-308 (328)
285 3ux8_A Excinuclease ABC, A sub 98.2 2.5E-06 8.4E-11 73.2 6.4 52 156-212 202-255 (670)
286 1j8m_F SRP54, signal recogniti 98.2 2.9E-06 1E-10 65.5 5.9 92 61-162 180-280 (297)
287 1t9h_A YLOQ, probable GTPase E 98.2 2.1E-06 7.2E-11 66.4 5.1 84 76-161 77-165 (307)
288 3g5u_A MCG1178, multidrug resi 98.1 1E-05 3.5E-10 74.1 8.6 48 157-209 527-574 (1284)
289 3g5u_A MCG1178, multidrug resi 98.0 1.7E-05 5.9E-10 72.6 9.3 47 158-209 1173-1219(1284)
290 1bif_A 6-phosphofructo-2-kinas 98.0 1.6E-07 5.4E-12 77.3 -3.9 103 10-114 36-148 (469)
291 2iw3_A Elongation factor 3A; a 98.0 2E-05 6.9E-10 69.6 8.0 44 158-206 550-593 (986)
292 3qf7_A RAD50; ABC-ATPase, ATPa 97.9 0.00042 1.4E-08 55.0 14.7 51 156-211 279-335 (365)
293 1ye8_A Protein THEP1, hypothet 97.9 5.9E-06 2E-10 58.9 3.1 43 159-206 79-128 (178)
294 2rcn_A Probable GTPase ENGC; Y 97.9 6.3E-05 2.2E-09 59.3 8.9 81 82-165 127-211 (358)
295 1ex7_A Guanylate kinase; subst 97.8 4.5E-06 1.5E-10 59.8 0.7 21 16-36 4-24 (186)
296 1lvg_A Guanylate kinase, GMP k 97.8 1.3E-05 4.3E-10 58.1 2.9 22 14-35 5-26 (198)
297 1kgd_A CASK, peripheral plasma 97.7 1.5E-05 5.2E-10 56.8 3.0 22 14-35 6-27 (180)
298 3a00_A Guanylate kinase, GMP k 97.7 1.5E-05 5.1E-10 57.1 2.8 21 15-35 3-23 (186)
299 1t9h_A YLOQ, probable GTPase E 97.7 1.3E-05 4.3E-10 62.1 2.5 22 14-35 174-195 (307)
300 2rcn_A Probable GTPase ENGC; Y 97.7 3.1E-05 1.1E-09 61.1 4.8 22 14-35 216-237 (358)
301 1znw_A Guanylate kinase, GMP k 97.7 1.6E-05 5.3E-10 58.0 2.8 20 15-34 22-41 (207)
302 1htw_A HI0065; nucleotide-bind 97.7 1.9E-05 6.4E-10 55.1 2.8 22 14-35 34-55 (158)
303 3tr0_A Guanylate kinase, GMP k 97.7 1.8E-05 6.2E-10 57.3 2.9 22 14-35 8-29 (205)
304 3q5d_A Atlastin-1; G protein, 97.7 8.9E-05 3E-09 60.2 7.0 26 10-35 64-89 (447)
305 3ney_A 55 kDa erythrocyte memb 97.7 8.4E-06 2.9E-10 58.9 0.9 24 12-35 18-41 (197)
306 1s96_A Guanylate kinase, GMP k 97.7 2.1E-05 7E-10 58.0 2.9 22 14-35 17-38 (219)
307 1zp6_A Hypothetical protein AT 97.6 3.4E-05 1.1E-09 55.3 3.7 22 14-35 10-31 (191)
308 3c8u_A Fructokinase; YP_612366 97.6 2.9E-05 1E-09 56.6 3.4 24 11-34 20-43 (208)
309 1z6g_A Guanylate kinase; struc 97.6 2.3E-05 8E-10 57.6 2.8 22 14-35 24-45 (218)
310 2yv5_A YJEQ protein; hydrolase 97.6 0.00013 4.6E-09 56.3 6.8 21 14-34 166-186 (302)
311 2xxa_A Signal recognition part 97.6 0.0004 1.4E-08 56.4 9.2 65 61-131 183-254 (433)
312 3b85_A Phosphate starvation-in 97.5 3.2E-05 1.1E-09 56.5 2.3 34 165-207 113-146 (208)
313 1knq_A Gluconate kinase; ALFA/ 97.5 7.7E-05 2.6E-09 52.6 4.1 22 13-34 8-29 (175)
314 2i3b_A HCR-ntpase, human cance 97.5 4.4E-05 1.5E-09 54.9 2.7 21 15-35 3-23 (189)
315 3asz_A Uridine kinase; cytidin 97.5 5.6E-05 1.9E-09 55.1 3.2 23 12-34 5-27 (211)
316 3tau_A Guanylate kinase, GMP k 97.5 7.2E-05 2.5E-09 54.5 3.6 24 13-36 8-31 (208)
317 2jeo_A Uridine-cytidine kinase 97.5 6.7E-05 2.3E-09 56.1 3.5 26 10-35 22-47 (245)
318 2bdt_A BH3686; alpha-beta prot 97.5 6E-05 2E-09 54.0 3.0 20 15-34 4-23 (189)
319 2bbw_A Adenylate kinase 4, AK4 97.5 6.9E-05 2.4E-09 56.1 3.4 22 13-34 27-48 (246)
320 2eyu_A Twitching motility prot 97.4 6.5E-05 2.2E-09 56.8 3.0 21 14-34 26-46 (261)
321 2ehv_A Hypothetical protein PH 97.4 6.6E-05 2.3E-09 56.0 3.0 20 15-34 32-51 (251)
322 1kag_A SKI, shikimate kinase I 97.4 7.6E-05 2.6E-09 52.5 3.0 21 14-34 5-25 (173)
323 3vaa_A Shikimate kinase, SK; s 97.4 8.8E-05 3E-09 53.6 3.4 22 13-34 25-46 (199)
324 2v9p_A Replication protein E1; 97.4 7.1E-05 2.4E-09 57.8 3.0 21 14-34 127-147 (305)
325 4eun_A Thermoresistant glucoki 97.4 8.5E-05 2.9E-09 53.8 3.0 22 13-34 29-50 (200)
326 2j41_A Guanylate kinase; GMP, 97.4 9.8E-05 3.3E-09 53.5 3.3 23 14-36 7-29 (207)
327 3lnc_A Guanylate kinase, GMP k 97.4 5.1E-05 1.8E-09 56.2 1.7 21 14-34 28-48 (231)
328 3aez_A Pantothenate kinase; tr 97.4 0.00013 4.5E-09 56.6 4.1 24 11-34 88-111 (312)
329 2qor_A Guanylate kinase; phosp 97.4 9.6E-05 3.3E-09 53.6 3.0 22 14-35 13-34 (204)
330 3ec2_A DNA replication protein 97.3 8.9E-05 3E-09 52.6 2.6 22 14-35 39-60 (180)
331 3lw7_A Adenylate kinase relate 97.3 0.00012 4E-09 51.4 3.2 20 14-33 2-21 (179)
332 4a74_A DNA repair and recombin 97.3 0.0001 3.5E-09 54.2 2.8 21 15-35 27-47 (231)
333 2if2_A Dephospho-COA kinase; a 97.3 0.00012 4.2E-09 52.9 3.0 22 14-35 2-23 (204)
334 1jjv_A Dephospho-COA kinase; P 97.3 0.00015 5.1E-09 52.6 3.4 22 14-35 3-24 (206)
335 3kb2_A SPBC2 prophage-derived 97.3 0.00014 4.6E-09 51.0 3.1 20 15-34 3-22 (173)
336 1u0l_A Probable GTPase ENGC; p 97.3 0.00013 4.5E-09 56.3 3.2 22 14-35 170-191 (301)
337 1lw7_A Transcriptional regulat 97.3 0.00012 4E-09 58.2 2.9 22 13-34 170-191 (365)
338 2f1r_A Molybdopterin-guanine d 97.3 7.4E-05 2.5E-09 52.7 1.5 20 15-34 4-23 (171)
339 1uf9_A TT1252 protein; P-loop, 97.3 0.00017 5.8E-09 52.0 3.5 24 12-35 7-30 (203)
340 3tqc_A Pantothenate kinase; bi 97.3 0.00018 6.1E-09 56.0 3.7 25 10-34 89-113 (321)
341 1cke_A CK, MSSA, protein (cyti 97.3 0.00015 5.2E-09 53.3 3.2 21 14-34 6-26 (227)
342 1np6_A Molybdopterin-guanine d 97.3 0.00015 5.3E-09 51.3 3.0 22 14-35 7-28 (174)
343 3t61_A Gluconokinase; PSI-biol 97.3 0.00015 5.1E-09 52.5 3.0 22 14-35 19-40 (202)
344 3jvv_A Twitching mobility prot 97.3 0.00013 4.5E-09 57.6 2.8 22 14-35 124-145 (356)
345 1ly1_A Polynucleotide kinase; 97.2 0.0002 6.9E-09 50.5 3.5 22 14-35 3-24 (181)
346 3uie_A Adenylyl-sulfate kinase 97.2 0.00021 7.1E-09 51.7 3.5 24 11-34 23-46 (200)
347 3fb4_A Adenylate kinase; psych 97.2 0.00017 6E-09 52.6 3.1 21 14-34 1-21 (216)
348 3dl0_A Adenylate kinase; phosp 97.2 0.00019 6.5E-09 52.4 3.1 21 14-34 1-21 (216)
349 1kht_A Adenylate kinase; phosp 97.2 0.00021 7E-09 51.0 3.2 21 14-34 4-24 (192)
350 4e22_A Cytidylate kinase; P-lo 97.2 0.00024 8.1E-09 53.4 3.6 23 12-34 26-48 (252)
351 3kta_A Chromosome segregation 97.2 0.00019 6.5E-09 50.9 2.9 21 15-35 28-48 (182)
352 3cm0_A Adenylate kinase; ATP-b 97.2 0.00027 9.1E-09 50.3 3.5 22 13-34 4-25 (186)
353 1sq5_A Pantothenate kinase; P- 97.2 0.00024 8E-09 55.1 3.5 24 11-34 78-101 (308)
354 2pt7_A CAG-ALFA; ATPase, prote 97.2 0.00018 6.2E-09 56.3 2.8 20 15-34 173-192 (330)
355 1tev_A UMP-CMP kinase; ploop, 97.2 0.00025 8.7E-09 50.7 3.4 22 13-34 3-24 (196)
356 1y63_A LMAJ004144AAA protein; 97.2 0.00028 9.4E-09 50.3 3.6 24 12-35 9-32 (184)
357 2qt1_A Nicotinamide riboside k 97.2 0.00027 9.3E-09 51.3 3.5 23 12-34 20-42 (207)
358 3b9q_A Chloroplast SRP recepto 97.2 0.0002 6.8E-09 55.3 2.9 23 12-34 99-121 (302)
359 2kjq_A DNAA-related protein; s 97.2 0.00015 5.1E-09 50.0 1.9 22 14-35 37-58 (149)
360 1rj9_A FTSY, signal recognitio 97.2 0.00022 7.5E-09 55.1 3.1 22 13-34 102-123 (304)
361 2cdn_A Adenylate kinase; phosp 97.1 0.0003 1E-08 50.8 3.6 25 10-34 17-41 (201)
362 2gza_A Type IV secretion syste 97.1 0.0002 6.7E-09 56.8 2.8 21 14-34 176-196 (361)
363 4dzz_A Plasmid partitioning pr 97.1 0.00015 5E-09 52.5 1.9 84 62-150 76-162 (206)
364 2vp4_A Deoxynucleoside kinase; 97.1 0.00029 9.9E-09 52.1 3.5 24 11-34 18-41 (230)
365 2jaq_A Deoxyguanosine kinase; 97.1 0.00026 8.8E-09 51.1 3.2 21 15-35 2-22 (205)
366 1aky_A Adenylate kinase; ATP:A 97.1 0.00027 9.3E-09 51.8 3.3 22 13-34 4-25 (220)
367 1rz3_A Hypothetical protein rb 97.1 0.00031 1E-08 50.8 3.6 23 12-34 21-43 (201)
368 2plr_A DTMP kinase, probable t 97.1 0.00032 1.1E-08 50.9 3.7 22 13-34 4-25 (213)
369 1p9r_A General secretion pathw 97.1 0.00021 7.3E-09 57.6 2.8 22 14-35 168-189 (418)
370 2ewv_A Twitching motility prot 97.1 0.00023 8E-09 56.6 3.0 23 13-35 136-158 (372)
371 1nks_A Adenylate kinase; therm 97.1 0.00028 9.7E-09 50.3 3.2 20 15-34 3-22 (194)
372 1qhx_A CPT, protein (chloramph 97.1 0.00032 1.1E-08 49.5 3.5 22 14-35 4-25 (178)
373 1odf_A YGR205W, hypothetical 3 97.1 0.00035 1.2E-08 53.7 3.8 24 11-34 29-52 (290)
374 3tlx_A Adenylate kinase 2; str 97.1 0.00035 1.2E-08 52.2 3.7 23 12-34 28-50 (243)
375 3iij_A Coilin-interacting nucl 97.1 0.00029 1E-08 49.9 3.2 22 13-34 11-32 (180)
376 2x8a_A Nuclear valosin-contain 97.1 0.00024 8E-09 54.1 2.8 20 16-35 47-66 (274)
377 2rhm_A Putative kinase; P-loop 97.1 0.00033 1.1E-08 50.0 3.5 21 14-34 6-26 (193)
378 3trf_A Shikimate kinase, SK; a 97.1 0.0003 1E-08 50.0 3.2 21 14-34 6-26 (185)
379 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00031 1E-08 48.4 3.0 21 15-35 25-45 (149)
380 2yvu_A Probable adenylyl-sulfa 97.1 0.00046 1.6E-08 49.1 3.9 25 10-34 10-34 (186)
381 2obl_A ESCN; ATPase, hydrolase 97.1 0.00028 9.7E-09 55.5 2.9 22 15-36 73-94 (347)
382 2npi_A Protein CLP1; CLP1-PCF1 97.1 0.00023 7.8E-09 58.2 2.5 21 14-34 139-159 (460)
383 2oap_1 GSPE-2, type II secreti 97.1 0.00028 9.6E-09 58.5 3.0 21 14-34 261-281 (511)
384 3sr0_A Adenylate kinase; phosp 97.1 0.00035 1.2E-08 50.8 3.2 22 14-35 1-22 (206)
385 1ukz_A Uridylate kinase; trans 97.1 0.00053 1.8E-08 49.5 4.1 23 12-34 14-36 (203)
386 1via_A Shikimate kinase; struc 97.0 0.0003 1E-08 49.6 2.8 20 15-34 6-25 (175)
387 1ixz_A ATP-dependent metallopr 97.0 0.00031 1E-08 52.7 2.9 21 15-35 51-71 (254)
388 1e4v_A Adenylate kinase; trans 97.0 0.00033 1.1E-08 51.2 3.0 21 15-35 2-22 (214)
389 1gvn_B Zeta; postsegregational 97.0 0.00043 1.5E-08 53.0 3.7 24 12-35 32-55 (287)
390 1xjc_A MOBB protein homolog; s 97.0 0.00042 1.4E-08 48.7 3.3 22 14-35 5-26 (169)
391 2wwf_A Thymidilate kinase, put 97.0 0.0005 1.7E-08 49.9 3.8 22 13-34 10-31 (212)
392 2og2_A Putative signal recogni 97.0 0.00034 1.2E-08 55.3 2.9 23 12-34 156-178 (359)
393 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00037 1.3E-08 51.2 3.0 21 15-35 25-45 (235)
394 2v54_A DTMP kinase, thymidylat 97.0 0.00048 1.6E-08 49.7 3.5 22 14-35 5-26 (204)
395 4ido_A Atlastin-1; GTPase, GTP 97.0 0.0022 7.5E-08 52.0 7.5 65 10-74 64-152 (457)
396 2c95_A Adenylate kinase 1; tra 97.0 0.00046 1.6E-08 49.4 3.3 22 13-34 9-30 (196)
397 3r20_A Cytidylate kinase; stru 97.0 0.00047 1.6E-08 51.1 3.2 23 12-34 8-30 (233)
398 2pt5_A Shikimate kinase, SK; a 97.0 0.00049 1.7E-08 48.0 3.2 21 15-35 2-22 (168)
399 2yhs_A FTSY, cell division pro 97.0 0.00038 1.3E-08 57.1 2.9 24 12-35 292-315 (503)
400 1zd8_A GTP:AMP phosphotransfer 97.0 0.00045 1.5E-08 50.9 3.1 21 14-34 8-28 (227)
401 2ze6_A Isopentenyl transferase 96.9 0.00044 1.5E-08 52.0 3.0 21 15-35 3-23 (253)
402 3cwq_A Para family chromosome 96.9 0.00068 2.3E-08 49.3 3.9 86 61-150 67-153 (209)
403 1vht_A Dephospho-COA kinase; s 96.9 0.0006 2E-08 49.9 3.6 22 13-34 4-25 (218)
404 2xb4_A Adenylate kinase; ATP-b 96.9 0.00051 1.7E-08 50.5 3.2 20 15-34 2-21 (223)
405 3euj_A Chromosome partition pr 96.9 0.00041 1.4E-08 56.9 2.9 22 14-35 30-51 (483)
406 1nij_A Hypothetical protein YJ 96.9 0.00033 1.1E-08 54.5 2.2 23 14-36 5-27 (318)
407 1gtv_A TMK, thymidylate kinase 96.9 0.0002 6.8E-09 52.2 0.9 20 15-34 2-21 (214)
408 1iy2_A ATP-dependent metallopr 96.9 0.00045 1.5E-08 52.6 2.9 21 15-35 75-95 (278)
409 2pez_A Bifunctional 3'-phospho 96.9 0.00067 2.3E-08 48.0 3.6 23 12-34 4-26 (179)
410 1in4_A RUVB, holliday junction 96.9 0.00044 1.5E-08 54.1 2.8 21 15-35 53-73 (334)
411 1uj2_A Uridine-cytidine kinase 96.9 0.00062 2.1E-08 51.0 3.5 25 11-35 20-44 (252)
412 1nn5_A Similar to deoxythymidy 96.9 0.00058 2E-08 49.6 3.2 22 13-34 9-30 (215)
413 2pbr_A DTMP kinase, thymidylat 96.9 0.00057 2E-08 48.8 3.1 21 15-35 2-22 (195)
414 2z0h_A DTMP kinase, thymidylat 96.9 0.00058 2E-08 48.9 3.1 21 15-35 2-22 (197)
415 2bwj_A Adenylate kinase 5; pho 96.9 0.00058 2E-08 49.0 3.0 22 14-35 13-34 (199)
416 2f6r_A COA synthase, bifunctio 96.9 0.0011 3.9E-08 50.5 4.7 24 11-34 73-96 (281)
417 1jbk_A CLPB protein; beta barr 96.8 0.0007 2.4E-08 47.9 3.3 22 14-35 44-65 (195)
418 1zak_A Adenylate kinase; ATP:A 96.8 0.00055 1.9E-08 50.2 2.8 22 14-35 6-27 (222)
419 2dpy_A FLII, flagellum-specifi 96.8 0.00057 1.9E-08 55.6 2.9 21 15-35 159-179 (438)
420 1cr0_A DNA primase/helicase; R 96.8 0.0006 2E-08 52.4 2.8 21 15-35 37-57 (296)
421 3be4_A Adenylate kinase; malar 96.8 0.00069 2.4E-08 49.6 3.0 21 14-34 6-26 (217)
422 1e6c_A Shikimate kinase; phosp 96.8 0.00071 2.4E-08 47.4 3.0 20 15-34 4-23 (173)
423 2p5t_B PEZT; postsegregational 96.8 0.00062 2.1E-08 51.1 2.7 23 12-34 31-53 (253)
424 1qf9_A UMP/CMP kinase, protein 96.8 0.00079 2.7E-08 47.9 3.2 21 14-34 7-27 (194)
425 1n0w_A DNA repair protein RAD5 96.8 0.00072 2.5E-08 50.1 3.0 21 15-35 26-46 (243)
426 2vli_A Antibiotic resistance p 96.8 0.00049 1.7E-08 48.7 2.0 21 14-34 6-26 (183)
427 2iyv_A Shikimate kinase, SK; t 96.8 0.00076 2.6E-08 47.8 2.9 21 15-35 4-24 (184)
428 1ak2_A Adenylate kinase isoenz 96.8 0.00091 3.1E-08 49.5 3.5 22 13-34 16-37 (233)
429 2cvh_A DNA repair and recombin 96.8 0.00076 2.6E-08 49.2 3.0 21 15-35 22-42 (220)
430 3nwj_A ATSK2; P loop, shikimat 96.8 0.00069 2.4E-08 50.8 2.7 21 14-34 49-69 (250)
431 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00076 2.6E-08 50.9 3.0 21 14-34 5-25 (260)
432 3umf_A Adenylate kinase; rossm 96.7 0.00083 2.9E-08 49.2 3.0 20 16-35 32-51 (217)
433 1zuh_A Shikimate kinase; alpha 96.7 0.00095 3.2E-08 46.6 3.2 20 15-34 9-28 (168)
434 1lv7_A FTSH; alpha/beta domain 96.7 0.0009 3.1E-08 50.2 3.1 22 14-35 46-67 (257)
435 3qks_A DNA double-strand break 96.7 0.00098 3.3E-08 48.3 3.0 20 15-34 25-44 (203)
436 2grj_A Dephospho-COA kinase; T 96.7 0.0011 3.9E-08 47.5 3.3 23 12-34 11-33 (192)
437 1m7g_A Adenylylsulfate kinase; 96.7 0.0013 4.6E-08 47.7 3.7 23 12-34 24-46 (211)
438 2w58_A DNAI, primosome compone 96.7 0.0011 3.6E-08 47.8 3.1 22 14-35 55-76 (202)
439 2p65_A Hypothetical protein PF 96.6 0.00086 2.9E-08 47.3 2.4 23 13-35 43-65 (187)
440 3bos_A Putative DNA replicatio 96.6 0.0012 3.9E-08 48.7 3.2 23 13-35 52-74 (242)
441 1svm_A Large T antigen; AAA+ f 96.6 0.001 3.5E-08 52.9 3.1 21 14-34 170-190 (377)
442 4eaq_A DTMP kinase, thymidylat 96.6 0.0014 4.9E-08 48.4 3.7 23 12-34 25-47 (229)
443 1a7j_A Phosphoribulokinase; tr 96.6 0.00054 1.9E-08 52.6 1.4 24 12-35 4-27 (290)
444 1qhl_A Protein (cell division 96.6 0.00017 5.7E-09 53.3 -1.5 20 16-35 30-49 (227)
445 1nlf_A Regulatory protein REPA 96.6 0.0011 3.7E-08 50.5 2.8 21 15-35 32-52 (279)
446 3end_A Light-independent proto 96.6 0.026 9E-07 43.3 10.6 84 61-151 156-242 (307)
447 2iw3_A Elongation factor 3A; a 96.6 0.00082 2.8E-08 59.6 2.1 45 158-207 903-947 (986)
448 1tue_A Replication protein E1; 96.5 0.0011 3.8E-08 47.9 2.5 21 14-34 59-79 (212)
449 1q3t_A Cytidylate kinase; nucl 96.5 0.0017 5.8E-08 48.1 3.4 24 11-34 14-37 (236)
450 3qkt_A DNA double-strand break 96.5 0.0014 4.8E-08 51.4 3.0 42 164-210 262-303 (339)
451 3gmt_A Adenylate kinase; ssgci 96.5 0.0017 5.7E-08 47.9 3.2 24 12-35 7-30 (230)
452 2px0_A Flagellar biosynthesis 96.5 0.0015 5.2E-08 50.2 3.0 22 13-34 105-126 (296)
453 3ake_A Cytidylate kinase; CMP 96.5 0.0019 6.6E-08 46.5 3.4 20 15-34 4-23 (208)
454 1ltq_A Polynucleotide kinase; 96.5 0.0015 5.2E-08 50.1 3.0 22 14-35 3-24 (301)
455 3n70_A Transport activator; si 96.5 0.0018 6E-08 44.2 2.9 24 12-35 23-46 (145)
456 1tf7_A KAIC; homohexamer, hexa 96.4 0.0014 4.8E-08 54.6 2.8 20 15-34 41-60 (525)
457 1pzn_A RAD51, DNA repair and r 96.4 0.0015 5.2E-08 51.4 2.8 23 14-36 132-154 (349)
458 3d3q_A TRNA delta(2)-isopenten 96.4 0.0022 7.5E-08 50.1 3.6 22 14-35 8-29 (340)
459 2qmh_A HPR kinase/phosphorylas 96.4 0.0017 6E-08 46.6 2.8 29 9-37 30-58 (205)
460 3b9p_A CG5977-PA, isoform A; A 96.4 0.0018 6.2E-08 49.6 3.0 24 12-35 53-76 (297)
461 1njg_A DNA polymerase III subu 96.4 0.0018 6.3E-08 47.4 3.0 21 15-35 47-67 (250)
462 3zvl_A Bifunctional polynucleo 96.4 0.0029 1E-07 51.1 4.3 24 12-35 257-280 (416)
463 4fcw_A Chaperone protein CLPB; 96.4 0.0027 9.4E-08 48.8 4.0 25 11-35 45-69 (311)
464 2o5v_A DNA replication and rep 96.4 0.0019 6.3E-08 51.1 3.0 47 157-208 266-321 (359)
465 3h4m_A Proteasome-activating n 96.4 0.0019 6.4E-08 49.1 3.0 23 13-35 51-73 (285)
466 3t15_A Ribulose bisphosphate c 96.4 0.002 6.7E-08 49.5 3.1 22 14-35 37-58 (293)
467 2dr3_A UPF0273 protein PH0284; 96.4 0.0018 6.2E-08 48.0 2.9 21 15-35 25-45 (247)
468 3cf0_A Transitional endoplasmi 96.4 0.0019 6.6E-08 49.7 3.0 23 13-35 49-71 (301)
469 1p5z_B DCK, deoxycytidine kina 96.4 0.0014 4.8E-08 49.4 2.1 25 10-34 21-45 (263)
470 3foz_A TRNA delta(2)-isopenten 96.4 0.0026 8.8E-08 49.1 3.6 22 14-35 11-32 (316)
471 2chg_A Replication factor C sm 96.3 0.0021 7.1E-08 46.6 3.0 21 15-35 40-60 (226)
472 4aby_A DNA repair protein RECN 96.3 0.00066 2.3E-08 54.7 0.2 19 15-33 62-80 (415)
473 3syl_A Protein CBBX; photosynt 96.3 0.0025 8.4E-08 49.1 3.4 24 11-34 65-88 (309)
474 1e69_A Chromosome segregation 96.3 0.0014 4.8E-08 51.0 2.0 49 156-209 219-271 (322)
475 1vma_A Cell division protein F 96.3 0.0022 7.4E-08 49.6 3.0 85 62-153 187-283 (306)
476 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.0027 9.2E-08 47.5 3.5 23 13-35 39-61 (262)
477 3exa_A TRNA delta(2)-isopenten 96.3 0.0029 1E-07 48.8 3.6 22 14-35 4-25 (322)
478 1l8q_A Chromosomal replication 96.3 0.0021 7.2E-08 49.9 2.8 22 14-35 38-59 (324)
479 1w1w_A Structural maintenance 96.3 0.0022 7.6E-08 52.0 3.0 48 157-209 334-385 (430)
480 3crm_A TRNA delta(2)-isopenten 96.3 0.0032 1.1E-07 48.9 3.7 22 14-35 6-27 (323)
481 1sxj_E Activator 1 40 kDa subu 96.2 0.0018 6.2E-08 50.8 2.3 20 16-35 39-58 (354)
482 3tqf_A HPR(Ser) kinase; transf 96.2 0.0028 9.5E-08 44.5 2.9 29 9-37 12-40 (181)
483 2h92_A Cytidylate kinase; ross 96.2 0.0025 8.5E-08 46.5 2.8 21 14-34 4-24 (219)
484 3cr8_A Sulfate adenylyltranfer 96.2 0.0017 5.9E-08 54.3 2.1 23 12-34 368-390 (552)
485 1d2n_A N-ethylmaleimide-sensit 96.2 0.0035 1.2E-07 47.4 3.6 25 11-35 62-86 (272)
486 2qby_A CDC6 homolog 1, cell di 96.2 0.0024 8.2E-08 50.5 2.7 23 13-35 45-67 (386)
487 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0041 1.4E-07 48.8 3.8 24 12-35 23-46 (359)
488 1fnn_A CDC6P, cell division co 96.1 0.0032 1.1E-07 49.9 3.3 21 15-35 46-66 (389)
489 1sxj_C Activator 1 40 kDa subu 96.1 0.0027 9.1E-08 49.7 2.8 21 15-35 48-68 (340)
490 3ld9_A DTMP kinase, thymidylat 96.1 0.0044 1.5E-07 45.6 3.6 26 9-34 17-42 (223)
491 3lda_A DNA repair protein RAD5 96.1 0.0029 1E-07 50.7 2.8 22 15-36 180-201 (400)
492 3co5_A Putative two-component 96.1 0.0018 6.1E-08 44.1 1.3 22 13-34 27-48 (143)
493 3eie_A Vacuolar protein sortin 96.0 0.004 1.4E-07 48.4 3.3 24 12-35 50-73 (322)
494 1ofh_A ATP-dependent HSL prote 96.0 0.0036 1.2E-07 48.0 3.0 23 13-35 50-72 (310)
495 4b4t_M 26S protease regulatory 96.0 0.0044 1.5E-07 50.2 3.4 23 12-34 214-236 (434)
496 3a8t_A Adenylate isopentenyltr 96.0 0.0052 1.8E-07 47.9 3.6 22 14-35 41-62 (339)
497 4b4t_K 26S protease regulatory 96.0 0.0045 1.5E-07 50.0 3.3 21 14-34 207-227 (428)
498 1xwi_A SKD1 protein; VPS4B, AA 95.9 0.0046 1.6E-07 48.1 3.3 23 13-35 45-67 (322)
499 1ewq_A DNA mismatch repair pro 95.9 0.0036 1.2E-07 54.4 2.8 20 15-34 578-597 (765)
500 2ocp_A DGK, deoxyguanosine kin 95.9 0.0053 1.8E-07 45.5 3.4 22 14-35 3-24 (241)
No 1
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=1.1e-37 Score=233.22 Aligned_cols=211 Identities=76% Similarity=1.236 Sum_probs=188.5
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d 87 (221)
....+.+||+|+|.+|||||||+++|+.+.+...+.++.+.+.......+.+..+.+.+|||+|++.+..++..+++++|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 45567899999999999999999998888888888999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
++++|||+++..++..+..|+..+.....+.|+++|+||+|+.++....+...++...++.++++|+++|.|++++|.+|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 169 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 169 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999999988878999999999999987766666667888889999999999999999999999
Q ss_pred HHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCCCCCCc
Q 027607 168 ARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDD 218 (221)
Q Consensus 168 ~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (221)
.+.+...+.......|...+++...+....++....++..+...++++|||
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 220 (221)
T 3gj0_A 170 ARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 220 (221)
T ss_dssp HHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhhccCCCCCCCC
Confidence 999999999999999999999999999999999999999999999888776
No 2
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=7.8e-37 Score=227.11 Aligned_cols=167 Identities=29% Similarity=0.537 Sum_probs=138.1
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d 87 (221)
..+.+++||+|+|.+|||||||+++|+.+.+...+.+|.+.++..+...+++..+.+.+|||+|++++..++..|++.++
T Consensus 8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~ 87 (216)
T 4dkx_A 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSA 87 (216)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCS
T ss_pred CCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcccc
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHH
Q 027607 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~ 164 (221)
++++|||+++..+|+.+..|+..+.... ++.|+++|+||+|+.+. .+ ..++..++...++.|+++||++|.|++++|
T Consensus 88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F 167 (216)
T 4dkx_A 88 AAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 167 (216)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHH
Confidence 9999999999999999999999987654 68999999999999753 33 345678899999999999999999999999
Q ss_pred HHHHHHHhCC
Q 027607 165 LYLARKLAGD 174 (221)
Q Consensus 165 ~~l~~~l~~~ 174 (221)
+.|++.+...
T Consensus 168 ~~i~~~i~~~ 177 (216)
T 4dkx_A 168 RRVAAALPGM 177 (216)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHhh
Confidence 9999987643
No 3
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=4e-32 Score=202.12 Aligned_cols=169 Identities=20% Similarity=0.329 Sum_probs=141.1
Q ss_pred CcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccc
Q 027607 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~ 86 (221)
.....+.+||+|+|++|||||||+++|+.+.+...+.++.+.++ .....+++..+.+.+|||+|++.+..++..+++.+
T Consensus 21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 99 (214)
T 3q3j_B 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 99 (214)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence 34556789999999999999999999999998888888888665 45666777889999999999999999999999999
Q ss_pred cEEEEEEECCChhhhcc-HHHHHHHHHhhcCCCCEEEEEeCCCcCCc--------------cccHHHHHHHhhcCC-eEE
Q 027607 87 QCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYY 150 (221)
Q Consensus 87 d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--------------~~~~~~~~~~~~~~~-~~~ 150 (221)
|++++|||+++..++.. +..|+..+.....+.|+++|+||+|+.+. ....+...++...++ .++
T Consensus 100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 179 (214)
T 3q3j_B 100 DAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL 179 (214)
T ss_dssp SEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred eEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence 99999999999999998 78999999888789999999999998652 233455678888888 999
Q ss_pred EecccCCCC-hHHHHHHHHHHHhCCCC
Q 027607 151 EISAKSNYN-FEKPFLYLARKLAGDPN 176 (221)
Q Consensus 151 ~~s~~~~~g-v~~~~~~l~~~l~~~~~ 176 (221)
++||++|.| ++++|.+|++.+.....
T Consensus 180 e~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 180 EGSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred EeccCCCcccHHHHHHHHHHHHhccCc
Confidence 999999998 99999999998877653
No 4
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=1.4e-31 Score=194.17 Aligned_cols=166 Identities=32% Similarity=0.532 Sum_probs=142.9
Q ss_pred CcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccc
Q 027607 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~ 86 (221)
.....+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 90 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 34567889999999999999999999999888888888887666 66677788888999999999999999999999999
Q ss_pred cEEEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCC-cc-ccHHHHHHHhhcCCeEEEeccc-CCCChH
Q 027607 87 QCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNLQYYEISAK-SNYNFE 161 (221)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~-~~-~~~~~~~~~~~~~~~~~~~s~~-~~~gv~ 161 (221)
|++++|||++++.++..+..|+..+... ..+.|+++|+||+|+.+ +. ...+...++...+++++++|++ +|.|++
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~ 170 (183)
T 3kkq_A 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVD 170 (183)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHH
Confidence 9999999999999999999999888654 35889999999999865 22 3344567888888999999999 999999
Q ss_pred HHHHHHHHHHhC
Q 027607 162 KPFLYLARKLAG 173 (221)
Q Consensus 162 ~~~~~l~~~l~~ 173 (221)
++|.+|.+.+.+
T Consensus 171 ~l~~~l~~~i~~ 182 (183)
T 3kkq_A 171 KTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999997753
No 5
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-31 Score=195.74 Aligned_cols=170 Identities=32% Similarity=0.568 Sum_probs=150.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
..+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+.+..+.+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 45679999999999999999999999988888888999888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~ 166 (221)
++|+|++++.++..+..|+..+.... .+.|+++|+||+|+..+... .+...++...++.++++|+++|.|++++|.+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE 171 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999998887654 47899999999999665443 4556777888899999999999999999999
Q ss_pred HHHHHhCCCCCcc
Q 027607 167 LARKLAGDPNLHF 179 (221)
Q Consensus 167 l~~~l~~~~~~~~ 179 (221)
|.+.+...+....
T Consensus 172 l~~~~~~~~~~~~ 184 (195)
T 1x3s_A 172 LVEKIIQTPGLWE 184 (195)
T ss_dssp HHHHHHTSGGGTC
T ss_pred HHHHHHhhhhhhc
Confidence 9999988765443
No 6
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.1e-31 Score=191.80 Aligned_cols=164 Identities=32% Similarity=0.554 Sum_probs=143.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
..+.+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+.+..+.+.+|||||++.+...+..++..+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 34679999999999999999999998888777888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc--cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
++|+|++++.++..+..|+..+.....+.|+++|+||+|+.+... ..+...++...+++++++|+++|.|++++|.+|
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 165 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 999999999999999999999988778899999999999865432 245567778888999999999999999999999
Q ss_pred HHHHhC
Q 027607 168 ARKLAG 173 (221)
Q Consensus 168 ~~~l~~ 173 (221)
.+.+..
T Consensus 166 ~~~~~~ 171 (181)
T 3tw8_B 166 TELVLR 171 (181)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 7
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=2.2e-31 Score=190.32 Aligned_cols=163 Identities=30% Similarity=0.596 Sum_probs=143.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+++..+.+.+|||||++.+...+..++..+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999998888778888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
+|+|++++.++..+..|+..+.....+.|+++|+||+|+.+. .. ..+...++...+++++++|+++|.|++++|.+|.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 162 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Confidence 999999999999999999888776678999999999998653 22 3445567777889999999999999999999999
Q ss_pred HHHhC
Q 027607 169 RKLAG 173 (221)
Q Consensus 169 ~~l~~ 173 (221)
+.+.+
T Consensus 163 ~~~~~ 167 (168)
T 1z2a_A 163 EKHLQ 167 (168)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 98754
No 8
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=5.9e-32 Score=199.34 Aligned_cols=168 Identities=34% Similarity=0.525 Sum_probs=136.9
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d 87 (221)
....+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN 103 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence 33455799999999999999999999988887777788887777777788887899999999999999999999999999
Q ss_pred EEEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCC-eEEEecccCCCChHHH
Q 027607 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNL-QYYEISAKSNYNFEKP 163 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~-~~~~~s~~~~~gv~~~ 163 (221)
++++|||+++..+++.+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...++ .++++||++|.|++++
T Consensus 104 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 183 (201)
T 2hup_A 104 GAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEA 183 (201)
T ss_dssp EEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999999998887765 67999999999999753 22 3455677778888 9999999999999999
Q ss_pred HHHHHHHHhCCC
Q 027607 164 FLYLARKLAGDP 175 (221)
Q Consensus 164 ~~~l~~~l~~~~ 175 (221)
|.+|++.+....
T Consensus 184 ~~~l~~~i~~~~ 195 (201)
T 2hup_A 184 FLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999886543
No 9
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=3.3e-31 Score=191.10 Aligned_cols=165 Identities=32% Similarity=0.623 Sum_probs=140.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.++|+|+|++|||||||+++++.+.+...+.++.+.++......+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 46799999999999999999999998888788888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCcCCcccc-HHHHHHHh-hcCCeEEEecccCCCChHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVK-AKQVTFHR-KKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~-~~~~~~~~-~~~~~~~~~s~~~~~gv~~~ 163 (221)
+|+|+++..++..+..|+..+.... .+.|+++|+||+|+..+... .+...++. ..+++++++|+++|.|++++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (177)
T 1wms_A 85 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAA 164 (177)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHH
Confidence 9999999999999999988886653 57899999999999754443 34445555 56789999999999999999
Q ss_pred HHHHHHHHhCCC
Q 027607 164 FLYLARKLAGDP 175 (221)
Q Consensus 164 ~~~l~~~l~~~~ 175 (221)
|.+|.+.+...+
T Consensus 165 ~~~l~~~~~~~~ 176 (177)
T 1wms_A 165 FEEAVRRVLATE 176 (177)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHhhc
Confidence 999999887643
No 10
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.9e-31 Score=190.98 Aligned_cols=163 Identities=33% Similarity=0.588 Sum_probs=143.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
..+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+.+..+.+.+||+||++.+...+..++..+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 34679999999999999999999999888888888999888888888888889999999999999999989999999999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~ 166 (221)
++|+|++++.++..+..|+..+... ....|+++|+||+|+.+. .. ..+...++...+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999998888765 358899999999998653 22 24556777788899999999999999999999
Q ss_pred HHHHHh
Q 027607 167 LARKLA 172 (221)
Q Consensus 167 l~~~l~ 172 (221)
|.+.+.
T Consensus 163 i~~~~~ 168 (170)
T 1r2q_A 163 IAKKLP 168 (170)
T ss_dssp HHHTSC
T ss_pred HHHHHh
Confidence 998654
No 11
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=3.5e-31 Score=189.72 Aligned_cols=163 Identities=29% Similarity=0.529 Sum_probs=136.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.+||+|+|++|||||||+++++.+.+...+.++.+.+.......+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 46799999999999999999999988887777888888887778888888899999999999999999999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
+|+|+++..++..+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999988876653 57999999999998653 22 345567777888999999999999999999999
Q ss_pred HHHHhC
Q 027607 168 ARKLAG 173 (221)
Q Consensus 168 ~~~l~~ 173 (221)
.+.+.+
T Consensus 164 ~~~~~~ 169 (170)
T 1z08_A 164 CKRMIE 169 (170)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 998754
No 12
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=4.6e-31 Score=193.38 Aligned_cols=167 Identities=25% Similarity=0.400 Sum_probs=143.3
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
...+.+||+|+|++|||||||+++|+.+.+...+.++.+.++.. ...+++..+.+.+|||||++.+...+..+++++|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 34567999999999999999999999998887888888766554 56677788899999999999999999999999999
Q ss_pred EEEEEECCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCcCC---cc-ccHHHHHHHhhcCCe-EEEecccCCCChHH
Q 027607 89 AIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN---RQ-VKAKQVTFHRKKNLQ-YYEISAKSNYNFEK 162 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~---~~-~~~~~~~~~~~~~~~-~~~~s~~~~~gv~~ 162 (221)
+++|||++++.++..+ ..|+..+.....+.|+++|+||+|+.+ +. ...+...++...++. ++++||++|.|+++
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE 177 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence 9999999999999986 678888887777899999999999864 22 334556777788887 99999999999999
Q ss_pred HHHHHHHHHhCCCC
Q 027607 163 PFLYLARKLAGDPN 176 (221)
Q Consensus 163 ~~~~l~~~l~~~~~ 176 (221)
+|++|.+.+.....
T Consensus 178 l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 178 VFEKSVDCIFSNKP 191 (194)
T ss_dssp HHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999877653
No 13
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=4.7e-31 Score=192.90 Aligned_cols=166 Identities=31% Similarity=0.541 Sum_probs=141.2
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d 87 (221)
....+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 34567899999999999999999999998887777788888888778888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHH
Q 027607 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~ 164 (221)
++++|+|+++..+++.+..|+..+.... .+.|+++|+||+|+... .. ..+...++...++.++++||++|.|++++|
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999998887653 58999999999998653 22 344557777888999999999999999999
Q ss_pred HHHHHHHhC
Q 027607 165 LYLARKLAG 173 (221)
Q Consensus 165 ~~l~~~l~~ 173 (221)
.+|++.+.+
T Consensus 176 ~~l~~~i~~ 184 (191)
T 2a5j_A 176 INTAKEIYR 184 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 14
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=3.1e-31 Score=191.45 Aligned_cols=164 Identities=33% Similarity=0.530 Sum_probs=143.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
..+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+.+..+.+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 34579999999999999999999999988887888888888888888888889999999999999998889999999999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~ 166 (221)
++|+|+++..++..+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...++.++++||++|.|++++|.+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE 171 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998887664 58899999999998643 22 34556777788999999999999999999999
Q ss_pred HHHHHhC
Q 027607 167 LARKLAG 173 (221)
Q Consensus 167 l~~~l~~ 173 (221)
|.+.+.+
T Consensus 172 l~~~i~~ 178 (179)
T 1z0f_A 172 AAKKIYQ 178 (179)
T ss_dssp HHHHHC-
T ss_pred HHHHHhh
Confidence 9998754
No 15
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-31 Score=190.70 Aligned_cols=161 Identities=33% Similarity=0.597 Sum_probs=141.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
+.+||+|+|++|||||||+++++.+.+...+.++.+.++......+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 57999999999999999999999998887888899988888888888888999999999999999999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc----ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR----QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~----~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~ 165 (221)
|+|++++.++..+..|+..+.... .+.|+++|+||+|+... ... .+...++...++.++++||++|.|++++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998887664 58899999999998643 222 344567777889999999999999999999
Q ss_pred HHHHHHh
Q 027607 166 YLARKLA 172 (221)
Q Consensus 166 ~l~~~l~ 172 (221)
+|.+.+.
T Consensus 162 ~l~~~i~ 168 (170)
T 1ek0_A 162 GIGEKIP 168 (170)
T ss_dssp HHHTTSC
T ss_pred HHHHHHh
Confidence 9987653
No 16
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.98 E-value=7e-31 Score=192.47 Aligned_cols=167 Identities=30% Similarity=0.541 Sum_probs=147.5
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
...+.+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 34567999999999999999999999998888888899888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-cc-HHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~ 165 (221)
+++|||+++..++..+..|+..+.... .+.|+++|+||+|+.+.. .. .+...++...+++++++||++|.|++++|.
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998887764 478999999999986543 22 455677888899999999999999999999
Q ss_pred HHHHHHhCCC
Q 027607 166 YLARKLAGDP 175 (221)
Q Consensus 166 ~l~~~l~~~~ 175 (221)
+|.+.+....
T Consensus 172 ~l~~~i~~~~ 181 (196)
T 3tkl_A 172 TMAAEIKKRM 181 (196)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999887643
No 17
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.98 E-value=4.4e-31 Score=191.12 Aligned_cols=164 Identities=33% Similarity=0.544 Sum_probs=143.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
..+.+||+|+|++|||||||+++++.+.+...+.++.+.++......+.+..+.+.+|||||++.+...+..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 45679999999999999999999999888877778888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~ 166 (221)
++|+|+++..++..+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...+++++++|+++|.|++++|.+
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 168 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYE 168 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999998887764 58899999999998643 22 34556677788899999999999999999999
Q ss_pred HHHHHhC
Q 027607 167 LARKLAG 173 (221)
Q Consensus 167 l~~~l~~ 173 (221)
|.+.+..
T Consensus 169 l~~~~~~ 175 (181)
T 2efe_B 169 IARRLPR 175 (181)
T ss_dssp HHHTCC-
T ss_pred HHHHHHh
Confidence 9987644
No 18
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.98 E-value=1.7e-30 Score=189.56 Aligned_cols=163 Identities=25% Similarity=0.526 Sum_probs=143.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
...+||+|+|++|||||||+++|+.+.+...+.++.+.++........+..+.+.+|||||++.+...+..++..+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 34699999999999999999999998887777888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
+|||++++.++..+..|+..+.... .+.|+++|+||+|+.... . ..+...++...++.++++|+++|.|++++|.+|
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 179 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERL 179 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999998887764 589999999999986532 2 234567777788999999999999999999999
Q ss_pred HHHHhC
Q 027607 168 ARKLAG 173 (221)
Q Consensus 168 ~~~l~~ 173 (221)
.+.+.+
T Consensus 180 ~~~i~~ 185 (189)
T 2gf9_A 180 VDVICE 185 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 19
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=5.4e-31 Score=194.12 Aligned_cols=163 Identities=34% Similarity=0.608 Sum_probs=143.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 35699999999999999999999999888788888888888888888888899999999999999988999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
+|||+++..++..+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...++.++++||++|.|++++|.+|
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 183 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998887664 47899999999998643 23 334556677788999999999999999999999
Q ss_pred HHHHhC
Q 027607 168 ARKLAG 173 (221)
Q Consensus 168 ~~~l~~ 173 (221)
++.+..
T Consensus 184 ~~~i~~ 189 (201)
T 2ew1_A 184 ACRLIS 189 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 20
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.98 E-value=7e-31 Score=188.07 Aligned_cols=162 Identities=28% Similarity=0.520 Sum_probs=143.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.+||+|+|++|||||||+++++.+.+...+.++.+.++......+.+....+.+|||||.+.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45799999999999999999999999888888899998888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
+|+|++++.++..+..|+..+... .+..|+++|+||+|+.+. .. ..+...++...+++++++|+++|.|++++|.+|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 999999999999999998888776 367899999999998653 22 334556777788999999999999999999999
Q ss_pred HHHHh
Q 027607 168 ARKLA 172 (221)
Q Consensus 168 ~~~l~ 172 (221)
.+.+.
T Consensus 164 ~~~i~ 168 (170)
T 1z0j_A 164 SRRIP 168 (170)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 98764
No 21
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=3.7e-31 Score=193.66 Aligned_cols=164 Identities=29% Similarity=0.499 Sum_probs=144.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+.+....+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 45799999999999999999999998887788899999988888888888899999999999999999999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCC-ccc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
+|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+ +.. ..+...++...+++++++|+++|.|++++|.+|
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 9999999999999999998887764 4789999999999865 222 345567777888999999999999999999999
Q ss_pred HHHHhCC
Q 027607 168 ARKLAGD 174 (221)
Q Consensus 168 ~~~l~~~ 174 (221)
.+.+.+.
T Consensus 181 ~~~i~~~ 187 (192)
T 2fg5_A 181 SRQIPPL 187 (192)
T ss_dssp HHTCC--
T ss_pred HHHHHhh
Confidence 9976543
No 22
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.98 E-value=7.9e-31 Score=189.93 Aligned_cols=164 Identities=24% Similarity=0.323 Sum_probs=142.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.+||+|+|++|||||||+++|+.+.+...+.++.+.++ .....+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 3679999999999999999999998988888888888776 666777888889999999999999999999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~ 166 (221)
+|||+++..+++.+..|+..+.... .+.|+++|+||+|+.... ...+...++...+++++++||++|.|++++|.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999999999998886653 478999999999985432 234566788888999999999999999999999
Q ss_pred HHHHHhCCC
Q 027607 167 LARKLAGDP 175 (221)
Q Consensus 167 l~~~l~~~~ 175 (221)
|.+.+....
T Consensus 163 l~~~~~~~~ 171 (181)
T 3t5g_A 163 IILEAEKMD 171 (181)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHhc
Confidence 999987754
No 23
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.98 E-value=3.4e-31 Score=191.23 Aligned_cols=166 Identities=25% Similarity=0.448 Sum_probs=141.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecC-cEEEEEEEecCCccccccccccccccccE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
..+.+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+.+ ....+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 34679999999999999999999998887777778888777777777776 46899999999999999999999999999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhhc---CCCC-EEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRVC---ENIP-IVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p-~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~ 162 (221)
+++|+|++++.+++.+..|+..+.... ...| +++|+||+|+.+. .. ..+...++...+++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 999999999999999999988876643 2555 7999999999653 23 3345567777889999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 027607 163 PFLYLARKLAGDP 175 (221)
Q Consensus 163 ~~~~l~~~l~~~~ 175 (221)
+|.+|.+.+...+
T Consensus 163 l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 163 CFQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhh
Confidence 9999999887654
No 24
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.98 E-value=6.4e-31 Score=188.27 Aligned_cols=163 Identities=27% Similarity=0.545 Sum_probs=136.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
..+||+|+|++|||||||+++++.+.+...+.++.+.++......+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 45899999999999999999999888877777888877777777778778999999999999999999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
|+|++++.++..+..|+..+.... .+.|+++|+||+|+..+... .+...++...+++++++||++|.|++++|.+|.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 161 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999998887764 57899999999999654443 3445677778899999999999999999999999
Q ss_pred HHhCC
Q 027607 170 KLAGD 174 (221)
Q Consensus 170 ~l~~~ 174 (221)
.+.+.
T Consensus 162 ~~~~~ 166 (170)
T 1g16_A 162 LIQEK 166 (170)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 87653
No 25
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.98 E-value=8.5e-31 Score=190.97 Aligned_cols=163 Identities=21% Similarity=0.341 Sum_probs=135.6
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
.+.+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||+|++.+..+ ..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 356779999999999999999999999988888888888665 445667888899999999999888775 678999999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecc-cCCCChH
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISA-KSNYNFE 161 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~-~~~~gv~ 161 (221)
+++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...++.++++|| ++|.|++
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~ 174 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ 174 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence 999999999999999999998887653 58999999999998653 23 34566788888999999999 8999999
Q ss_pred HHHHHHHHHHhC
Q 027607 162 KPFLYLARKLAG 173 (221)
Q Consensus 162 ~~~~~l~~~l~~ 173 (221)
++|.+|++.+.+
T Consensus 175 ~lf~~l~~~i~~ 186 (187)
T 3c5c_A 175 HVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999987753
No 26
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.3e-30 Score=190.83 Aligned_cols=162 Identities=24% Similarity=0.372 Sum_probs=138.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++++|+++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 4679999999999999999999999888777777776554 445666777789999999999999999999999999999
Q ss_pred EEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCc-------------cc-cHHHHHHHhhcCC-eEEEecc
Q 027607 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKNL-QYYEISA 154 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~-~~~~~~~~~~~~~-~~~~~s~ 154 (221)
+|||++++.++..+. .|+..+....++.|+++|+||+|+.+. .. ..+...++...++ .++++||
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 174 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeC
Confidence 999999999999887 788888877778999999999998653 22 2345566777776 8999999
Q ss_pred cCCCChHHHHHHHHHHHhC
Q 027607 155 KSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 155 ~~~~gv~~~~~~l~~~l~~ 173 (221)
++|.|++++|.+|.+.+..
T Consensus 175 ~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 175 LTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998753
No 27
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=3.5e-31 Score=194.85 Aligned_cols=166 Identities=27% Similarity=0.510 Sum_probs=131.8
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d 87 (221)
....+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+++..+.+.+|||||++.+...+..+++.+|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 34566799999999999999999999998887778888888888888888888899999999999999888889999999
Q ss_pred EEEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCC-------ccc-cHHHHHHHhhcCCeEEEecccCCC
Q 027607 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-------RQV-KAKQVTFHRKKNLQYYEISAKSNY 158 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-------~~~-~~~~~~~~~~~~~~~~~~s~~~~~ 158 (221)
++++|||+++..++..+..|+..+.... .+.|+++|+||+|+.+ +.. ..+...++...++.++++||++|.
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~ 182 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS 182 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence 9999999999999999999988887654 4789999999999852 222 234456777788999999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 027607 159 NFEKPFLYLARKLAG 173 (221)
Q Consensus 159 gv~~~~~~l~~~l~~ 173 (221)
|++++|.+|++.+..
T Consensus 183 gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 183 NIVEAVLHLAREVKK 197 (199)
T ss_dssp THHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998754
No 28
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=190.42 Aligned_cols=164 Identities=29% Similarity=0.505 Sum_probs=143.6
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
..+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+.+..+.+.+|||||.+.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 34569999999999999999999999888877788888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-c-ccHHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-Q-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~-~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~ 166 (221)
++|+|++++.++..+..|+..+.... .+.|+++|+||+|+... . ...+...++...++.++++||++|.|++++|.+
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 181 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFET 181 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999988886653 57899999999998653 2 234455677778899999999999999999999
Q ss_pred HHHHHhC
Q 027607 167 LARKLAG 173 (221)
Q Consensus 167 l~~~l~~ 173 (221)
|.+.+..
T Consensus 182 l~~~i~~ 188 (193)
T 2oil_A 182 VLKEIFA 188 (193)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 29
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.97 E-value=8.4e-31 Score=190.53 Aligned_cols=161 Identities=21% Similarity=0.394 Sum_probs=134.1
Q ss_pred CcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccc
Q 027607 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~ 86 (221)
.....+++||+|+|++|||||||+++++.+.+...+.++.+ .+...+.+++..+.+.+|||+|++.+. +++.+
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~ 86 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV 86 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence 35677899999999999999999999999988777777643 334677788888999999999988765 78889
Q ss_pred cEEEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcC---Ccccc-HHHHHHHhhcC-CeEEEecccCCCC
Q 027607 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK---NRQVK-AKQVTFHRKKN-LQYYEISAKSNYN 159 (221)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~---~~~~~-~~~~~~~~~~~-~~~~~~s~~~~~g 159 (221)
|++++|||++++.+|+.+..|+..+.... .+.|+++|+||+|+. .+... .+...++...+ +.++++||++|.|
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN 166 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence 99999999999999999999999887653 478999999999984 22333 34556777776 8999999999999
Q ss_pred hHHHHHHHHHHHhCC
Q 027607 160 FEKPFLYLARKLAGD 174 (221)
Q Consensus 160 v~~~~~~l~~~l~~~ 174 (221)
++++|.+|++.+...
T Consensus 167 v~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 167 VERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987653
No 30
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.7e-30 Score=186.83 Aligned_cols=165 Identities=28% Similarity=0.566 Sum_probs=134.7
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccC-CcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
..+.+||+|+|++|||||||+++|+.+.+. ..+.++.+.++......+++..+.+.+|||||++.+...+..++..+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 456799999999999999999999988874 4567788888777777788888899999999999999999999999999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~ 165 (221)
+++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.... . ..+...++...+++++++||++|.|++++|.
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 166 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT 166 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998887765 589999999999987532 2 3345567777789999999999999999999
Q ss_pred HHHHHHhCC
Q 027607 166 YLARKLAGD 174 (221)
Q Consensus 166 ~l~~~l~~~ 174 (221)
+|.+.+...
T Consensus 167 ~l~~~~~~~ 175 (180)
T 2g6b_A 167 AIAKELKRR 175 (180)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 999988654
No 31
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=6.4e-31 Score=196.02 Aligned_cols=177 Identities=45% Similarity=0.818 Sum_probs=147.1
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc-EEEEEEEecCCcccccccccccccccc
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~D~~g~~~~~~~~~~~~~~~d 87 (221)
...+.+||+|+|.+|||||||+++|+.+.+...+.++.+.+..........+ .+.+.+|||+|++.+...+..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 3457899999999999999999998888888788888888877777665544 388999999999999999999999999
Q ss_pred EEEEEEECCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHH
Q 027607 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~ 164 (221)
++++|+|+++..++..+..|+..+..... +.|+++|+||+|+.+. ... .....++...++.++++||++|.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 99999999999999999999988877653 5899999999998764 333 33446777888999999999999999999
Q ss_pred HHHHHHHhCCCCCccccCCCC
Q 027607 165 LYLARKLAGDPNLHFVESPAL 185 (221)
Q Consensus 165 ~~l~~~l~~~~~~~~~~ep~~ 185 (221)
.+|++.+...........+..
T Consensus 167 ~~l~~~~~~~~~~~~~~~~~~ 187 (218)
T 4djt_A 167 LHLARIFTGRPDLIFVSNVNL 187 (218)
T ss_dssp HHHHHHHHCCTTCCBCSCCCC
T ss_pred HHHHHHHhcccccccccccCc
Confidence 999999988877665544433
No 32
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=4.1e-31 Score=191.75 Aligned_cols=162 Identities=30% Similarity=0.574 Sum_probs=113.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 86 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence 57999999999999999999998887776677788877777777788888999999999999999999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|++++|.+|.
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 166 (183)
T 2fu5_C 87 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166 (183)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999998887653 57899999999999753 32 3455677778889999999999999999999999
Q ss_pred HHHhC
Q 027607 169 RKLAG 173 (221)
Q Consensus 169 ~~l~~ 173 (221)
+.+..
T Consensus 167 ~~i~~ 171 (183)
T 2fu5_C 167 RDIKA 171 (183)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 33
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.97 E-value=1.1e-30 Score=186.48 Aligned_cols=162 Identities=30% Similarity=0.525 Sum_probs=135.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
++.+||+++|++|||||||+++++.+.+...+.++.+... .....+++..+.+.+||+||++.+...+..++..+|+++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 4679999999999999999999998888777777776544 345567777889999999999998888899999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~ 166 (221)
+|+|+++..++..+..|+..+..... +.|+++|+||+|+.+. .. ..+...++...+++++++|+++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 99999999999999999888877653 8999999999998653 22 34555677778899999999999999999999
Q ss_pred HHHHHhC
Q 027607 167 LARKLAG 173 (221)
Q Consensus 167 l~~~l~~ 173 (221)
|.+.+.+
T Consensus 161 l~~~i~~ 167 (168)
T 1u8z_A 161 LMREIRA 167 (168)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998754
No 34
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.97 E-value=1.7e-30 Score=185.57 Aligned_cols=160 Identities=33% Similarity=0.577 Sum_probs=136.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
+.+||+++|++|||||||+++++.+.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 579999999999999999999999888777777777554 3556677778899999999999999999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhc-CCeEEEecccCCCChHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~-~~~~~~~s~~~~~gv~~~~~~ 166 (221)
|||++++.++..+..|+..+.... .+.|+++|+||+|+.+.. . ..+...++... +.+++++||++|.|++++|.+
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 999999999999999988887653 589999999999986533 2 33445566665 789999999999999999999
Q ss_pred HHHHHh
Q 027607 167 LARKLA 172 (221)
Q Consensus 167 l~~~l~ 172 (221)
|.+.+.
T Consensus 161 l~~~i~ 166 (167)
T 1c1y_A 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998763
No 35
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=1.6e-30 Score=188.86 Aligned_cols=165 Identities=27% Similarity=0.484 Sum_probs=139.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
+++.+||+++|++|||||||+++|+.+.+...+.++.+... .....+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 80 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 80 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence 35679999999999999999999998888777777776444 44566778889999999999999999999999999999
Q ss_pred EEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc-------------c-cHHHHHHHhhcCC-eEEEec
Q 027607 90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEIS 153 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~-~~~~~~~~~~~~~-~~~~~s 153 (221)
++|||++++.++..+. .|+..+.....+.|+++|+||+|+.+.. . ..+...++...+. +++++|
T Consensus 81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 81 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 9999999999999887 6888887776789999999999986431 1 2234456667776 999999
Q ss_pred ccCCCChHHHHHHHHHHHhCCC
Q 027607 154 AKSNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 154 ~~~~~gv~~~~~~l~~~l~~~~ 175 (221)
|++|.|++++|.+|.+.+...+
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCCC
T ss_pred CCCccCHHHHHHHHHHHHhccc
Confidence 9999999999999999887654
No 36
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=1.1e-30 Score=189.86 Aligned_cols=163 Identities=24% Similarity=0.414 Sum_probs=137.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
..+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 35679999999999999999999999888777778887555 34566777789999999999999999999999999999
Q ss_pred EEEEECCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCcCCc-------------ccc-HHHHHHHhhcC-CeEEEec
Q 027607 90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKN-LQYYEIS 153 (221)
Q Consensus 90 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~-~~~~~~~~~~~-~~~~~~s 153 (221)
++|||++++.++..+ ..|+..+....++.|+++|+||+|+.+. .+. .+...++...+ +.++++|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 162 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 162 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence 999999999999988 6888888777778999999999998642 222 34556666666 7899999
Q ss_pred cc-CCCChHHHHHHHHHHHhC
Q 027607 154 AK-SNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 154 ~~-~~~gv~~~~~~l~~~l~~ 173 (221)
|+ +|.|++++|.+|.+.+..
T Consensus 163 a~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 163 ALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTTBHHHHHHHHHHHHHHHHT
T ss_pred ecCCCcCHHHHHHHHHHHHhc
Confidence 98 689999999999998764
No 37
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.97 E-value=2.9e-30 Score=190.85 Aligned_cols=165 Identities=34% Similarity=0.644 Sum_probs=142.8
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
..+.++|+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 45779999999999999999999999888888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCcCCccccH-HHHHHHh-hcCCeEEEecccCCCChHH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA-KQVTFHR-KKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~-~~~~~~~-~~~~~~~~~s~~~~~gv~~ 162 (221)
++|+|++++.++..+..|+..+.... .+.|+++|+||+|+..+.... +...++. ..+++++++||++|.|+++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 164 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ 164 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 99999999999999999988876654 478999999999997544433 3445555 5678999999999999999
Q ss_pred HHHHHHHHHhCC
Q 027607 163 PFLYLARKLAGD 174 (221)
Q Consensus 163 ~~~~l~~~l~~~ 174 (221)
+|.+|++.+...
T Consensus 165 l~~~l~~~~~~~ 176 (207)
T 1vg8_A 165 AFQTIARNALKQ 176 (207)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988653
No 38
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.97 E-value=2.1e-30 Score=191.08 Aligned_cols=163 Identities=26% Similarity=0.540 Sum_probs=143.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+.+..+.+.+|||||.+.+...+..+++.+|++++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 86 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL 86 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence 56999999999999999999999988877788888888888888888888999999999999999899999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|++++|.+|.
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (203)
T 1zbd_A 87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 166 (203)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999998887664 58999999999999653 22 3345567777889999999999999999999999
Q ss_pred HHHhCC
Q 027607 169 RKLAGD 174 (221)
Q Consensus 169 ~~l~~~ 174 (221)
+.+...
T Consensus 167 ~~i~~~ 172 (203)
T 1zbd_A 167 DVICEK 172 (203)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987653
No 39
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=8.4e-31 Score=191.21 Aligned_cols=165 Identities=30% Similarity=0.554 Sum_probs=139.0
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccc-cccccccccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHG 86 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~-~~~~~~~~~~ 86 (221)
....+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+. .++..+++.+
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV 94 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence 345577999999999999999999999998888788888888888888888888999999999998887 7888899999
Q ss_pred cEEEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCC---CC
Q 027607 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSN---YN 159 (221)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~---~g 159 (221)
|++++|+|+++..++..+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...++.++++|+++| .|
T Consensus 95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~ 174 (189)
T 1z06_A 95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH 174 (189)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccC
Confidence 99999999999999999999998887763 58999999999998653 22 34455677788899999999999 99
Q ss_pred hHHHHHHHHHHHh
Q 027607 160 FEKPFLYLARKLA 172 (221)
Q Consensus 160 v~~~~~~l~~~l~ 172 (221)
+.++|.+|++.+.
T Consensus 175 i~~l~~~l~~~i~ 187 (189)
T 1z06_A 175 VEAIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 40
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.97 E-value=1.5e-30 Score=188.23 Aligned_cols=165 Identities=30% Similarity=0.518 Sum_probs=141.0
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
+..+.++|+|+|++|||||||+++|+.+.+...+.++.+..+. ....+++..+.+.+|||||++.+...+..++..+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 3457899999999999999999999999888877888876655 556677777899999999999999999999999999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHH
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~ 164 (221)
+++|||+++..++..+..|+..+.... .+.|+++|+||+|+... .. ..+...++...++.++++|+++|.|++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 999999999999999999988875432 57899999999998653 23 344556777788999999999999999999
Q ss_pred HHHHHHHhCC
Q 027607 165 LYLARKLAGD 174 (221)
Q Consensus 165 ~~l~~~l~~~ 174 (221)
++|.+.+.+.
T Consensus 164 ~~l~~~~~~~ 173 (181)
T 2fn4_A 164 EQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988654
No 41
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.97 E-value=2.3e-30 Score=188.21 Aligned_cols=164 Identities=32% Similarity=0.571 Sum_probs=143.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.+||+|+|++|||||||+++|+.+.+...+.++.+.+.......+++..+.+.+|||||++.+...+..++..+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 45799999999999999999999998888777888888888888888888889999999999999988899999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
+|+|++++.++..+..|+..+.... .+.|+++|+||+|+... .. ..+...++...++.++++||++|.|++++|.+|
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 167 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC 167 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999988876653 58899999999998642 23 245567778889999999999999999999999
Q ss_pred HHHHhCC
Q 027607 168 ARKLAGD 174 (221)
Q Consensus 168 ~~~l~~~ 174 (221)
.+.+...
T Consensus 168 ~~~~~~~ 174 (186)
T 2bme_A 168 ARKILNK 174 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988653
No 42
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=3.5e-30 Score=190.40 Aligned_cols=165 Identities=29% Similarity=0.527 Sum_probs=145.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
...+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 35699999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
+|||++++.++..+..|+..+.... .+.|+++|+||+|+... .. ..+...++...+++++++||++|.|++++|.+|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 165 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM 165 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998887664 57899999999999753 23 234556777788999999999999999999999
Q ss_pred HHHHhCCC
Q 027607 168 ARKLAGDP 175 (221)
Q Consensus 168 ~~~l~~~~ 175 (221)
.+.+....
T Consensus 166 ~~~i~~~~ 173 (206)
T 2bcg_Y 166 ARQIKESM 173 (206)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99886643
No 43
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=1.5e-30 Score=193.24 Aligned_cols=165 Identities=27% Similarity=0.457 Sum_probs=138.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||++.+..++..+++++|+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4779999999999999999999999888777777877544 445667777899999999999999999999999999999
Q ss_pred EEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc----------ccHHHHHHHhhcCC-eEEEecccCCC
Q 027607 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ----------VKAKQVTFHRKKNL-QYYEISAKSNY 158 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~-~~~~~s~~~~~ 158 (221)
+|||++++.++..+. .|+..+....++.|+++|+||+|+.+.. ...+...++...+. .++++||++|.
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~ 165 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQ 165 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCC
Confidence 999999999999886 7988888777789999999999986532 23445566777775 89999999999
Q ss_pred ChHHHHHHHHHHHhCCCC
Q 027607 159 NFEKPFLYLARKLAGDPN 176 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~ 176 (221)
|++++|.+|++.+.....
T Consensus 166 gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 166 NVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp THHHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHhhhhh
Confidence 999999999999877653
No 44
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=2.9e-30 Score=190.25 Aligned_cols=165 Identities=28% Similarity=0.451 Sum_probs=137.9
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d 87 (221)
.++...+||+|+|.+|||||||+++++.+.+...+.++.+.++. ....+++..+.+.+|||||++.+...+..+++.+|
T Consensus 20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 98 (201)
T 2gco_A 20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD 98 (201)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCC
Confidence 45567899999999999999999999998887777777776554 34567777889999999999999999999999999
Q ss_pred EEEEEEECCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCcCCcc-------------c-cHHHHHHHhhcCC-eEEE
Q 027607 88 CAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYE 151 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~-~~~~~~~~~~~~~-~~~~ 151 (221)
++++|||++++.++..+ ..|...+.....+.|+++|+||+|+.... . ..+...++...+. .+++
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (201)
T 2gco_A 99 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE 178 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence 99999999999999988 57888887776789999999999986531 1 2344566666676 8999
Q ss_pred ecccCCCChHHHHHHHHHHHhC
Q 027607 152 ISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 152 ~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
+||++|.|++++|.+|.+.+.+
T Consensus 179 ~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 179 CSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred eeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999997653
No 45
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.97 E-value=1.3e-30 Score=191.24 Aligned_cols=166 Identities=23% Similarity=0.303 Sum_probs=133.9
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc-cccccccccc
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQ 87 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~-~~~~~~~~~d 87 (221)
...+.+||+|+|++|||||||+++|+.........++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 445679999999999999999999764433323344555555666677788889999999999987654 6677889999
Q ss_pred EEEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHH
Q 027607 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~ 163 (221)
++++|||++++.+|..+..|+..+.... .+.|+++|+||+|+.+. ... .+...++...++.++++||++|.|++++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence 9999999999999999999998887654 48999999999999653 333 3455677778899999999999999999
Q ss_pred HHHHHHHHhCC
Q 027607 164 FLYLARKLAGD 174 (221)
Q Consensus 164 ~~~l~~~l~~~ 174 (221)
|.+|++.+...
T Consensus 179 f~~l~~~i~~~ 189 (195)
T 3cbq_A 179 FEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999988654
No 46
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.1e-30 Score=194.02 Aligned_cols=169 Identities=30% Similarity=0.513 Sum_probs=137.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 45699999999999999999999998887777788888888778888888899999999999999999999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
+|||++++.++..+..|+..+.... .+.|+++|+||+|+... .. ..+...++...++.++++||++|.|++++|.+|
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 170 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998887653 47899999999998653 23 244556777888999999999999999999999
Q ss_pred HHHHhCCCCCcc
Q 027607 168 ARKLAGDPNLHF 179 (221)
Q Consensus 168 ~~~l~~~~~~~~ 179 (221)
++.+........
T Consensus 171 ~~~i~~~~~~~~ 182 (223)
T 3cpj_B 171 INTIYQKVSKHQ 182 (223)
T ss_dssp HHHHTTCC----
T ss_pred HHHHHHHhhhcc
Confidence 999987655443
No 47
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.97 E-value=2e-30 Score=185.63 Aligned_cols=161 Identities=24% Similarity=0.308 Sum_probs=124.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc-ccccccccccEEEE
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCAII 91 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~-~~~~~~~~~d~~i~ 91 (221)
.+||+++|++|||||||+++|+.+........+.+.+.......+++..+.+.+||++|++.+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 48999999999999999999887666555555666667777777888889999999999988776 66777899999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCcCC-ccc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~-~~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
|||++++.++..+..|+..+..... +.|+++|+||+|+.+ +.. ..+...++...+++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999998877654 899999999999864 233 344557888889999999999999999999999
Q ss_pred HHHHhC
Q 027607 168 ARKLAG 173 (221)
Q Consensus 168 ~~~l~~ 173 (221)
.+.+..
T Consensus 162 ~~~i~~ 167 (169)
T 3q85_A 162 VRQIRL 167 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998754
No 48
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.97 E-value=1.7e-30 Score=187.60 Aligned_cols=162 Identities=29% Similarity=0.566 Sum_probs=141.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.+||+|+|++|||||||+++++.+.+...+.++.+.+.......+++..+.+.+|||||++.+...+..++..+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999988888878888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
+|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.. . ..+...++...+++++++|+++|.|++++|.+|
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 171 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999988887654 589999999999986432 2 344556777788999999999999999999999
Q ss_pred HHHHh
Q 027607 168 ARKLA 172 (221)
Q Consensus 168 ~~~l~ 172 (221)
.+.+.
T Consensus 172 ~~~~~ 176 (179)
T 2y8e_A 172 AAALP 176 (179)
T ss_dssp HHTCC
T ss_pred HHHHh
Confidence 88653
No 49
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=3.3e-30 Score=189.79 Aligned_cols=165 Identities=25% Similarity=0.380 Sum_probs=130.4
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d 87 (221)
....+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||++.+..++..++.++|
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 3456789999999999999999999998887777777776444 445667777889999999999999999999999999
Q ss_pred EEEEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCc-------------cc-cHHHHHHHhhcCC-eEEE
Q 027607 88 CAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKNL-QYYE 151 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~-~~~~~~~~~~~~~-~~~~ 151 (221)
++++|||++++.++..+. .|+..+.....+.|+++|+||+|+... .. ..+...++...+. .+++
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 999999999999999986 798888877779999999999998642 22 2344566666676 8999
Q ss_pred ecccCCCChHHHHHHHHHHHhC
Q 027607 152 ISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 152 ~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
+||++|.|++++|.+|.+.+..
T Consensus 174 ~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 174 CSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999998754
No 50
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=7.3e-32 Score=197.19 Aligned_cols=165 Identities=25% Similarity=0.513 Sum_probs=145.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
..+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+.+..+.+.+|||||++.+..++..+++.+|++
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 44679999999999999999999998888777778888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~ 166 (221)
++|||+++..+++.+..|+..+.... .+.|+++|+||+|+.+.. ...+...++...++.++++|+++|.|++++|.+
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 179 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFER 179 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999887765 589999999999986532 234455777888999999999999999999999
Q ss_pred HHHHHhCC
Q 027607 167 LARKLAGD 174 (221)
Q Consensus 167 l~~~l~~~ 174 (221)
|.+.+.+.
T Consensus 180 l~~~i~~~ 187 (191)
T 3dz8_A 180 LVDAICDK 187 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99987653
No 51
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.3e-30 Score=190.76 Aligned_cols=164 Identities=28% Similarity=0.575 Sum_probs=135.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
..+.+||+|+|.+|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||+|++.+...+..+++.+|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999998888777788888888888888888889999999999999988889999999999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-ccc-HHHHHHHhh-cCCeEEEecccCCCChHHHHH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRK-KNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~-~~~~~~~~s~~~~~gv~~~~~ 165 (221)
++|||+++..+++.+..|+..+.... .+.|+++|+||+|+.+. ... .+...++.. .++.++++||++|.|++++|.
T Consensus 103 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 182 (192)
T 2il1_A 103 ILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFL 182 (192)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999988887664 47999999999998653 332 344455655 378999999999999999999
Q ss_pred HHHHHHhC
Q 027607 166 YLARKLAG 173 (221)
Q Consensus 166 ~l~~~l~~ 173 (221)
+|.+.+.+
T Consensus 183 ~l~~~i~~ 190 (192)
T 2il1_A 183 KLVDDILK 190 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 52
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=191.53 Aligned_cols=164 Identities=31% Similarity=0.574 Sum_probs=133.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 45699999999999999999999988887777788887787778888888899999999999999999999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
+|||++++.++..+..|+..+.... .+.|+++|+||+|+... .. ..+...++...++.++++||++|.|++++|.+|
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 182 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC 182 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998886654 58999999999998643 22 245567778889999999999999999999999
Q ss_pred HHHHhCC
Q 027607 168 ARKLAGD 174 (221)
Q Consensus 168 ~~~l~~~ 174 (221)
++.+...
T Consensus 183 ~~~i~~~ 189 (200)
T 2o52_A 183 ARTILNK 189 (200)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988653
No 53
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=1.5e-30 Score=192.36 Aligned_cols=163 Identities=24% Similarity=0.414 Sum_probs=137.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
..+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 45679999999999999999999999988777778887655 44566677789999999999999999999999999999
Q ss_pred EEEEECCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCcCCc-------------ccc-HHHHHHHhhcC-CeEEEec
Q 027607 90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKN-LQYYEIS 153 (221)
Q Consensus 90 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~-~~~~~~~~~~~-~~~~~~s 153 (221)
++|||+++..++..+ ..|+..+.....+.|+++|+||+|+.+. .+. .+...++...+ +.++++|
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 183 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 183 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEee
Confidence 999999999999988 6888888777778999999999998642 222 33456666666 7899999
Q ss_pred cc-CCCChHHHHHHHHHHHhC
Q 027607 154 AK-SNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 154 ~~-~~~gv~~~~~~l~~~l~~ 173 (221)
|+ +|.|++++|..|.+.++.
T Consensus 184 Ak~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 184 ALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TTTCHHHHHHHHHHHHHHHHH
T ss_pred eccCCcCHHHHHHHHHHHHhh
Confidence 99 689999999999987753
No 54
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=192.65 Aligned_cols=166 Identities=28% Similarity=0.497 Sum_probs=119.2
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
...+.+||+|+|++|||||||+++|+.+.+...+.++.+.. ......+++..+.+.+|||||++.+...+..++..+|+
T Consensus 30 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 108 (214)
T 2j1l_A 30 PGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASV 108 (214)
T ss_dssp --CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEE-EEEEEEETTEEEEEEEEEC---------------CEEE
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCE
Confidence 34578999999999999999999999888777667777543 34556777788899999999999999999999999999
Q ss_pred EEEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc-------------c-cHHHHHHHhhcCC-eEEEe
Q 027607 89 AIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEI 152 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~-~~~~~~~~~~~~~-~~~~~ 152 (221)
+++|||++++.++..+. .|+..+.....+.|+++|+||+|+.... + ..+...++...++ .++++
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 109 LLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999886 7888887777789999999999986532 1 2334566677776 89999
Q ss_pred cccCCCChHHHHHHHHHHHhCCC
Q 027607 153 SAKSNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 153 s~~~~~gv~~~~~~l~~~l~~~~ 175 (221)
||++|.|++++|.+|.+.+...+
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999887554
No 55
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=191.86 Aligned_cols=167 Identities=23% Similarity=0.316 Sum_probs=137.2
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
...+.+||+|+|.+|||||||+++|+.+.+...+.++.+..+ .....+.+..+.+.+|||||++.+...+..+++.+|+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 345789999999999999999999999988887788887665 5555666677899999999999999999999999999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCCChHHHH
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~ 164 (221)
+++|||+++..++..+..|+..+.... .+.|+++|+||+|+.... . ..+...++...+++++++||++|.|++++|
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIF 178 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999998887653 478999999999986432 2 345567788889999999999999999999
Q ss_pred HHHHHHHhCCCC
Q 027607 165 LYLARKLAGDPN 176 (221)
Q Consensus 165 ~~l~~~l~~~~~ 176 (221)
.+|.+.+.....
T Consensus 179 ~~l~~~i~~~~~ 190 (201)
T 3oes_A 179 TKVIQEIARVEN 190 (201)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHhhhh
Confidence 999998876543
No 56
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.8e-30 Score=189.43 Aligned_cols=166 Identities=28% Similarity=0.437 Sum_probs=134.1
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d 87 (221)
.++..++||+|+|++|||||||+++|+.+.+...+.++.+..+.. ...+++..+.+.+|||||++.+...+..++..+|
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (207)
T 2fv8_A 20 FQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD 98 (207)
T ss_dssp GGGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCC
T ss_pred cccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCC
Confidence 556778999999999999999999999888877777777655543 3566777889999999999999999999999999
Q ss_pred EEEEEEECCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCcCCcc-------------c-cHHHHHHHhhcCC-eEEE
Q 027607 88 CAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYE 151 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~-~~~~~~~~~~~~~-~~~~ 151 (221)
++++|||++++.++..+ ..|+..+....++.|+++|+||+|+.... . ..+...++...+. .+++
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (207)
T 2fv8_A 99 VILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLE 178 (207)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEE
Confidence 99999999999999888 67888887776789999999999986531 1 2234456666666 8999
Q ss_pred ecccCCCChHHHHHHHHHHHhCC
Q 027607 152 ISAKSNYNFEKPFLYLARKLAGD 174 (221)
Q Consensus 152 ~s~~~~~gv~~~~~~l~~~l~~~ 174 (221)
+||++|.|++++|.+|.+.+...
T Consensus 179 ~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 179 CSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHSC
T ss_pred eeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988654
No 57
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=2.8e-30 Score=186.90 Aligned_cols=164 Identities=27% Similarity=0.551 Sum_probs=126.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec-CcEEEEEEEecCCccccccccccccccccE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
..+.++|+|+|++|||||||+++++.+.+...+.++.+.+.....+.++ +....+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 3467999999999999999999999988877778888877777777666 456899999999999999999999999999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCcCCc--cc-cHHHHHHHh-hcCCeEEEecccCCCC
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNR--QV-KAKQVTFHR-KKNLQYYEISAKSNYN 159 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~--~~-~~~~~~~~~-~~~~~~~~~s~~~~~g 159 (221)
+++|+|+++..++..+..|+..+.... .+.|+++|+||+|+... .. ..+...++. ..+.+++++|+++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 999999999999999999998886653 57899999999998532 22 233445555 4678899999999999
Q ss_pred hHHHHHHHHHHHhC
Q 027607 160 FEKPFLYLARKLAG 173 (221)
Q Consensus 160 v~~~~~~l~~~l~~ 173 (221)
++++|.+|.+.+.+
T Consensus 165 i~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 165 VDTAFEEIARSALQ 178 (182)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999997754
No 58
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.97 E-value=5.2e-30 Score=187.36 Aligned_cols=164 Identities=29% Similarity=0.524 Sum_probs=140.7
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeee-eeEEEecCc---------EEEEEEEecCCcccccccc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH-PLDFFTNCG---------KIRFYCWDTAGQEKFGGLR 79 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~i~~~D~~g~~~~~~~~ 79 (221)
..+.+||+|+|++|||||||+++|+.+.+...+.++.+.++. .....+.+. .+.+.+|||||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 345699999999999999999999988887777888887776 555566655 7899999999999998888
Q ss_pred ccccccccEEEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEeccc
Q 027607 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAK 155 (221)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~ 155 (221)
..+++.+|++++|+|++++.++..+..|+..+.... .+.|+++|+||+|+... .. ..+...++...+++++++|++
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 167 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA 167 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECC
Confidence 999999999999999999999999999998887765 58999999999998653 22 344556777788999999999
Q ss_pred CCCChHHHHHHHHHHHhC
Q 027607 156 SNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 156 ~~~gv~~~~~~l~~~l~~ 173 (221)
+|.|++++|.+|.+.+.+
T Consensus 168 ~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 168 NGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998754
No 59
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.97 E-value=3.8e-30 Score=185.14 Aligned_cols=162 Identities=20% Similarity=0.296 Sum_probs=127.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc--cccccccccccccE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLRDGYYIHGQC 88 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~--~~~~~~~~~~~~d~ 88 (221)
.+.+||+|+|++|||||||+++|+.+.+... .++.+.+.....+.+++..+.+.+|||+|++. +..+...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 4679999999999999999999887766443 45677777777788888888999999999877 45666778899999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHH
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~ 164 (221)
+++|||++++.++..+..|+..+... ..+.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 99999999999999999998887664 247999999999999653 332 34456677788999999999999999999
Q ss_pred HHHHHHHhC
Q 027607 165 LYLARKLAG 173 (221)
Q Consensus 165 ~~l~~~l~~ 173 (221)
.+|.+.+..
T Consensus 161 ~~l~~~~~~ 169 (175)
T 2nzj_A 161 EGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998753
No 60
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=4.3e-30 Score=189.70 Aligned_cols=166 Identities=29% Similarity=0.508 Sum_probs=140.8
Q ss_pred CcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccc
Q 027607 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~ 86 (221)
.....+.++|+|+|++|||||||+++|+.+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++..+
T Consensus 8 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (206)
T 2bov_A 8 GQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 86 (206)
T ss_dssp ---CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhC
Confidence 34566789999999999999999999998888777777777554 45566777788999999999999988889999999
Q ss_pred cEEEEEEECCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~ 162 (221)
|++++|||+++..++..+..|+..+..... +.|+++|+||+|+.+. .. ..+...++...+++++++|+++|.|+++
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 166 (206)
T 2bov_A 87 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK 166 (206)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Confidence 999999999999999999999988877653 8999999999998653 22 3455567777889999999999999999
Q ss_pred HHHHHHHHHhC
Q 027607 163 PFLYLARKLAG 173 (221)
Q Consensus 163 ~~~~l~~~l~~ 173 (221)
+|.+|.+.+..
T Consensus 167 l~~~l~~~i~~ 177 (206)
T 2bov_A 167 VFFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998865
No 61
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=4.1e-30 Score=186.79 Aligned_cols=165 Identities=29% Similarity=0.514 Sum_probs=138.7
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d 87 (221)
..+.+.+||+|+|++|||||||+++|+.+.+...+.++.+... .....+.+..+.+.+|||||++.+...+..++..+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (187)
T 2a9k_A 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91 (187)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence 4456789999999999999999999998888777777776544 345567777789999999999998888899999999
Q ss_pred EEEEEEECCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHH
Q 027607 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~ 163 (221)
++++|||+++..++..+..|+..+..... +.|+++|+||+|+.+. .. ..+...++...+++++++|+++|.|++++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (187)
T 2a9k_A 92 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 171 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHH
Confidence 99999999999999999999888877654 8999999999998653 22 34556777788899999999999999999
Q ss_pred HHHHHHHHhC
Q 027607 164 FLYLARKLAG 173 (221)
Q Consensus 164 ~~~l~~~l~~ 173 (221)
|.+|.+.+..
T Consensus 172 ~~~l~~~i~~ 181 (187)
T 2a9k_A 172 FFDLMREIRA 181 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 62
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=8.5e-30 Score=187.73 Aligned_cols=162 Identities=31% Similarity=0.496 Sum_probs=138.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcE-----------------------------
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK----------------------------- 61 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 61 (221)
.+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+.+..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 357999999999999999999999998887888888877777777666544
Q ss_pred --------EEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc
Q 027607 62 --------IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (221)
Q Consensus 62 --------~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 133 (221)
..+.+|||||++.+...+..+++.+|++++|+|++++.++..+..|+..+.... ..|+++|+||+|...+.
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~piilv~NK~D~~~~~ 163 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS-NYIIILVANKIDKNKFQ 163 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CCEEEEEEECTTCC-CC
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC-CCcEEEEEECCCccccc
Confidence 889999999999999999999999999999999999999999999988887664 49999999999944333
Q ss_pred cc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607 134 VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 134 ~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
.. .+...++...+++++++||++|.|++++|.+|.+.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 164 VDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp SCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 33 45667788889999999999999999999999987754
No 63
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=1.7e-31 Score=195.81 Aligned_cols=164 Identities=20% Similarity=0.177 Sum_probs=134.7
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcc-----------cCCcceeeeeeEE-EecCcEEEEEEEecCCcccccc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----------EPTIGVEVHPLDF-FTNCGKIRFYCWDTAGQEKFGG 77 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~i~~~D~~g~~~~~~ 77 (221)
..+.+||+|+|++|||||||++. +.+.+...+ .++.+.++..... .+++..+.+.+|||||++.+..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~-l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKW-IYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHH-HHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHHH-HHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 35679999999999999999975 666665543 2355555555444 5667788999999999999999
Q ss_pred ccccccccccEEEEEEECC------ChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC-eEE
Q 027607 78 LRDGYYIHGQCAIIMFDVT------ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYY 150 (221)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~ 150 (221)
.+..+++++|++++|||++ +..++..+..|+..+.....+.|+++|+||+|+.+.....+...++...++ .++
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVL 169 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEE
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEE
Confidence 9999999999999999999 556777777777776544568999999999999877666677788888888 999
Q ss_pred EecccCCCChHHHHHHHHHHHhCC
Q 027607 151 EISAKSNYNFEKPFLYLARKLAGD 174 (221)
Q Consensus 151 ~~s~~~~~gv~~~~~~l~~~l~~~ 174 (221)
++||++|.|++++|.+|.+.+.+.
T Consensus 170 ~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 170 EAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred EEecCCCcCHHHHHHHHHHHHHHH
Confidence 999999999999999999987653
No 64
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=8.2e-30 Score=185.60 Aligned_cols=163 Identities=27% Similarity=0.517 Sum_probs=137.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+++||+|+|++|||||||+++|+.+.+...+.++.+ +.......+++..+.+.+|||||++.+..++..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3679999999999999999999998888777777765 444556677888889999999999999999999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCccccH-HHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
+|||+++..++..+..|+..+.... .+.|+++|+||+|+..+.... ....++...+++++++||++|.|++++|.+|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999988887653 479999999999997655443 4556777888999999999999999999999
Q ss_pred HHHHhCC
Q 027607 168 ARKLAGD 174 (221)
Q Consensus 168 ~~~l~~~ 174 (221)
.+.+...
T Consensus 161 ~~~~~~~ 167 (189)
T 4dsu_A 161 VREIRKH 167 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987543
No 65
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=1e-29 Score=188.72 Aligned_cols=164 Identities=27% Similarity=0.529 Sum_probs=141.6
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
..+.++|+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34579999999999999999999998888777788888888877888888788999999999999999999999999999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
++|||+++..++..+..|+..+.... .+.|+++|+||+|+..+... .+...++...+++++++|+++|.|++++|.+|
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 176 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999998887664 37899999999999654443 34456677778999999999999999999999
Q ss_pred HHHHhC
Q 027607 168 ARKLAG 173 (221)
Q Consensus 168 ~~~l~~ 173 (221)
.+.+..
T Consensus 177 ~~~~~~ 182 (213)
T 3cph_A 177 AKLIQE 182 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998755
No 66
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.97 E-value=6.7e-30 Score=184.54 Aligned_cols=156 Identities=21% Similarity=0.377 Sum_probs=128.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.+||+++|++|||||||+++|+.+.+.. +.++.+.. +...+.+++..+.+.+|||+|++. ..+++++|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 578999999999999999999999888865 67777744 355667787888999999999876 46788999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCcC---Ccccc-HHHHHHHhhc-CCeEEEecccCCCChH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVK---NRQVK-AKQVTFHRKK-NLQYYEISAKSNYNFE 161 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~---~~~~~-~~~~~~~~~~-~~~~~~~s~~~~~gv~ 161 (221)
+|||++++.++..+..|+..+.... .+.|+++|+||+|+. .+... .+...++... +++++++||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 9999999999999999876665442 478999999999983 23333 3444565554 6899999999999999
Q ss_pred HHHHHHHHHHhC
Q 027607 162 KPFLYLARKLAG 173 (221)
Q Consensus 162 ~~~~~l~~~l~~ 173 (221)
++|.+|++.+..
T Consensus 158 ~lf~~l~~~~~~ 169 (178)
T 2iwr_A 158 RVFQEVAQKVVT 169 (178)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 67
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=8.1e-31 Score=189.90 Aligned_cols=163 Identities=28% Similarity=0.447 Sum_probs=122.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
..+.+||+|+|++|||||||+++++.+.+...+.++.+..+. ....+++..+.+.+|||||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 356799999999999999999999988877766666664433 2334455667888999999999999999999999999
Q ss_pred EEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc------------ccHHHHHHHhhcCC-eEEEeccc
Q 027607 90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------------VKAKQVTFHRKKNL-QYYEISAK 155 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~-~~~~~s~~ 155 (221)
++|||++++.++..+. .|+..+.....+.|+++|+||+|+.+.. ...+...++...+. +++++||+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 9999999999999887 6888887776789999999999986532 22344566777775 89999999
Q ss_pred CCCChHHHHHHHHHHHhC
Q 027607 156 SNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 156 ~~~gv~~~~~~l~~~l~~ 173 (221)
+|.|++++|++|.+.+..
T Consensus 164 ~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TCTTHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999997653
No 68
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.97 E-value=7.9e-30 Score=182.01 Aligned_cols=160 Identities=19% Similarity=0.256 Sum_probs=113.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
+.+||+++|++|||||||+++++.... ....++.+.++ .....+++..+.+.+||++|++.+..++..+++.+|++++
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI 78 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCccc-cCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence 358999999999999999999765443 34556666655 4556778888999999999999999999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
|||++++.++..+..|+..+... ..+.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|++++|++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence 99999999999999998888764 258999999999998653 23 334557777888999999999999999999999
Q ss_pred HHHHhC
Q 027607 168 ARKLAG 173 (221)
Q Consensus 168 ~~~l~~ 173 (221)
.+.+..
T Consensus 159 ~~~~~~ 164 (166)
T 3q72_A 159 VRQIRL 164 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 997653
No 69
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=1.5e-29 Score=184.64 Aligned_cols=167 Identities=26% Similarity=0.487 Sum_probs=128.6
Q ss_pred CCcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccc
Q 027607 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85 (221)
Q Consensus 6 ~~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~ 85 (221)
.+...++.+||+++|.+|||||||+++|+.+.+...+.++.+... .....+.+..+.+.+||+||++.+...+..++..
T Consensus 14 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 92 (190)
T 3con_A 14 LYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92 (190)
T ss_dssp -----CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTT
T ss_pred ccccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCc
Confidence 344567889999999999999999999998887776666665433 4456667778899999999999999999999999
Q ss_pred ccEEEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcccc-HHHHHHHhhcCCeEEEecccCCCChHH
Q 027607 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~ 162 (221)
+|++++|||+++..++..+..|+..+.... .+.|+++|+||+|+..+... .+...++...+++++++|+++|.|+++
T Consensus 93 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 172 (190)
T 3con_A 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVED 172 (190)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 999999999999999999999988887654 37999999999998764433 445577777889999999999999999
Q ss_pred HHHHHHHHHhC
Q 027607 163 PFLYLARKLAG 173 (221)
Q Consensus 163 ~~~~l~~~l~~ 173 (221)
+|.+|.+.+.+
T Consensus 173 l~~~l~~~~~~ 183 (190)
T 3con_A 173 AFYTLVREIRQ 183 (190)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 70
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.97 E-value=3.1e-30 Score=183.96 Aligned_cols=160 Identities=28% Similarity=0.517 Sum_probs=136.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
+.+||+++|++|||||||+++++.+.+...+.++.+.. ......+++....+.+|||||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 56999999999999999999999888877777777643 35666778888899999999999988888889999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l 167 (221)
|+|++++.++..+..|+..+.... .+.|+++|+||+|+... .. ..+...++...+++++++|+++|.|++++|++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 999999999999999988876653 48999999999998643 22 334556777778999999999999999999999
Q ss_pred HHHHh
Q 027607 168 ARKLA 172 (221)
Q Consensus 168 ~~~l~ 172 (221)
.+.+.
T Consensus 161 ~~~~~ 165 (167)
T 1kao_A 161 VRQMN 165 (167)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98764
No 71
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=6.4e-30 Score=187.77 Aligned_cols=164 Identities=19% Similarity=0.334 Sum_probs=130.0
Q ss_pred CcccCCceEEEEEcCCCCcHHHHHHHHhcCccCC-cccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccc
Q 027607 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~ 85 (221)
.....+.+||+|+|.+|||||||+++|+.+.+.. .+.++.+...... ....+.+.+|||||++.+..++..+++.
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 86 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF----EKGRVAFTVFDMGGAKKFRGLWETYYDN 86 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEE----EETTEEEEEEEECCSGGGGGGGGGGCTT
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHhc
Confidence 3567788999999999999999999999888877 6788888555433 3456899999999999999999999999
Q ss_pred ccEEEEEEECCChhhhccHHHHHHHHHhhc---------CCCCEEEEEeCCCcCCccccHHHHH------HHhhcCCeEE
Q 027607 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC---------ENIPIVLCGNKVDVKNRQVKAKQVT------FHRKKNLQYY 150 (221)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---------~~~p~ivv~nK~D~~~~~~~~~~~~------~~~~~~~~~~ 150 (221)
+|++++|||+++..+|..+..|+..+.... .+.|+++|+||+|+.......+... .+...++.++
T Consensus 87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (199)
T 4bas_A 87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIF 166 (199)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEE
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEE
Confidence 999999999999999999988888775542 2889999999999976533222211 1144678899
Q ss_pred EecccCCCChHHHHHHHHHHHhCC
Q 027607 151 EISAKSNYNFEKPFLYLARKLAGD 174 (221)
Q Consensus 151 ~~s~~~~~gv~~~~~~l~~~l~~~ 174 (221)
++||++|.|++++|++|.+.+...
T Consensus 167 ~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 167 ASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EeeCCCccCHHHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 72
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=1.5e-29 Score=180.13 Aligned_cols=161 Identities=28% Similarity=0.514 Sum_probs=136.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
+.+||+++|++|||||||+++++.+.+...+.++.+.. ......+.+..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 46899999999999999999999888777666666543 34556677778899999999999888888889999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCcCCcccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
|+|+++..++..+..|+..+..... +.|+++|+||+|+..+... .+...++...+++++++|+++|.|+++++.+|.
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999999888876643 7999999999998764433 445567777889999999999999999999999
Q ss_pred HHHhC
Q 027607 169 RKLAG 173 (221)
Q Consensus 169 ~~l~~ 173 (221)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T 2ce2_X 161 REIRQ 165 (166)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98754
No 73
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.97 E-value=8.3e-31 Score=193.74 Aligned_cols=163 Identities=24% Similarity=0.388 Sum_probs=105.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcC--ccCCcccCCcceeeeeeEEEecCc--EEEEEEEecCCccccccccccccccc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTNCG--KIRFYCWDTAGQEKFGGLRDGYYIHG 86 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~D~~g~~~~~~~~~~~~~~~ 86 (221)
.+.++|+|+|++|||||||+++|+.+ .+...+.++.+.+.....+.+.+. .+.+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 56799999999999999999998887 676677778877777777777776 88999999999999999999999999
Q ss_pred cEEEEEEECCChhhhccHHHHHHHHHhhcC----CCCEEEEEeCCCcCC--ccc-cHHHHHHHhhcCCeEEEecccC-CC
Q 027607 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLCGNKVDVKN--RQV-KAKQVTFHRKKNLQYYEISAKS-NY 158 (221)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~ivv~nK~D~~~--~~~-~~~~~~~~~~~~~~~~~~s~~~-~~ 158 (221)
|++++|||++++.++..+..|+..+..... +.|+++|+||+|+.. +.. ..+...++...++.++++|+++ |.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999998877653 889999999999975 333 3456677888889999999999 99
Q ss_pred ChHHHHHHHHHHHhC
Q 027607 159 NFEKPFLYLARKLAG 173 (221)
Q Consensus 159 gv~~~~~~l~~~l~~ 173 (221)
|++++|.+|.+.+..
T Consensus 178 gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 178 DADAPFLSIATTFYR 192 (208)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999997643
No 74
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.9e-30 Score=187.78 Aligned_cols=163 Identities=28% Similarity=0.405 Sum_probs=137.6
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
..+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+||+||++. ...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 45789999999999999999999999988777777877544 45567777889999999999887 67778889999999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCC-ChHHHH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNY-NFEKPF 164 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~-gv~~~~ 164 (221)
++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...+++++++||++|. |++++|
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~ 182 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF 182 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence 99999999999999999988887653 58999999999998653 23 344556777788999999999999 999999
Q ss_pred HHHHHHHhCC
Q 027607 165 LYLARKLAGD 174 (221)
Q Consensus 165 ~~l~~~l~~~ 174 (221)
.+|++.+.+.
T Consensus 183 ~~l~~~i~~~ 192 (196)
T 2atv_A 183 YELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999987653
No 75
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=6.5e-30 Score=188.79 Aligned_cols=162 Identities=26% Similarity=0.472 Sum_probs=133.1
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
...+.+||+|+|.+|||||||+++|+.+.+...+.++.+ +.......+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 456789999999999999999999998888777777775 4445566677788899999999999999999999999999
Q ss_pred EEEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc-------------c-cHHHHHHHhhcCC-eEEEe
Q 027607 89 AIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEI 152 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~-~~~~~~~~~~~~~-~~~~~ 152 (221)
+++|||++++.++..+. .|+..+.....+.|+++|+||+|+.... . ..+...++...++ +++++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 99999999999999987 7888888777789999999999986532 1 2334456666665 59999
Q ss_pred cccCCCChHHHHHHHHHHH
Q 027607 153 SAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 153 s~~~~~gv~~~~~~l~~~l 171 (221)
||++|.|++++|.+|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998854
No 76
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=2.2e-29 Score=183.18 Aligned_cols=159 Identities=17% Similarity=0.266 Sum_probs=129.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.++|+++|++|||||||+++++.+. ...+.++.+.+..... + +...+.+|||||++.+...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~--~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLE--H--RGFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEE--E--TTEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEE--E--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 678999999999999999999988777 6667777775544333 3 3578999999999999999999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~~ 163 (221)
+|+|++++.++..+..|+..+... ..+.|+++|+||+|+.+.....+..... ...+++++++||++|.|++++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG 170 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHH
Confidence 999999999999988888777554 3589999999999997643333322221 234678999999999999999
Q ss_pred HHHHHHHHhCC
Q 027607 164 FLYLARKLAGD 174 (221)
Q Consensus 164 ~~~l~~~l~~~ 174 (221)
|++|.+.+.++
T Consensus 171 ~~~l~~~i~~~ 181 (186)
T 1ksh_A 171 IDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 99999988664
No 77
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=7.9e-30 Score=185.72 Aligned_cols=161 Identities=22% Similarity=0.313 Sum_probs=126.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~ 89 (221)
..+.++|+|+|++|||||||+++++.+.+. .+.++.+.+.... .+ ++..+.+|||||++.+...+..++.++|++
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~--~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 87 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEI--VI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFV 87 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEE--EE--TTEEEEEEECCC----CGGGHHHHTTCCEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEE--EE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence 467899999999999999999998887776 5666776544333 33 348899999999999999999999999999
Q ss_pred EEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHH
Q 027607 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~ 162 (221)
++|+|++++.++..+..|+..+... ..+.|+++|+||+|+.+.....+..... ...++.++++||++|.|+++
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 167 (187)
T 1zj6_A 88 IVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ 167 (187)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHH
Confidence 9999999999999999998887664 3689999999999997643333322222 23467899999999999999
Q ss_pred HHHHHHHHHhCCC
Q 027607 163 PFLYLARKLAGDP 175 (221)
Q Consensus 163 ~~~~l~~~l~~~~ 175 (221)
+|++|++.+...+
T Consensus 168 l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 168 GLEWMMSRLKIRL 180 (187)
T ss_dssp HHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHh
Confidence 9999999876654
No 78
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.1e-29 Score=184.99 Aligned_cols=164 Identities=26% Similarity=0.412 Sum_probs=137.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.++|+|+|++|||||||+++|+.+.+...+.++.+.++. .....++..+.+.+|||||++.+...+..++..+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 46799999999999999999999998887777777775543 34556777889999999999998888888999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCcccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~ 166 (221)
+|||++++.++..+..|+..+.... .+.|+++|+||+|+..+... .+...++...++.++++||++|.|++++|.+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE 164 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Confidence 9999999999999888887776543 47899999999999765443 3445677778899999999999999999999
Q ss_pred HHHHHhCCC
Q 027607 167 LARKLAGDP 175 (221)
Q Consensus 167 l~~~l~~~~ 175 (221)
|.+.+....
T Consensus 165 l~~~~~~~~ 173 (199)
T 2gf0_A 165 LLTLETRRN 173 (199)
T ss_dssp HHHHCSSSC
T ss_pred HHHHHhhhh
Confidence 999775543
No 79
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=2e-29 Score=184.07 Aligned_cols=161 Identities=21% Similarity=0.345 Sum_probs=125.6
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCc-cCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~ 86 (221)
....+.+||+|+|.+|||||||+++|+.+. +...+.++.+.... .+.++ +..+.+|||+|++.+...+..++.++
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE--KFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEG 91 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEE--EEECS--SCEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHHhcC
Confidence 455678999999999999999999988776 45556666664332 33333 47899999999999999999999999
Q ss_pred cEEEEEEECCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCcCCccccHHHHHHHh-----hcCCeEEEecccCC
Q 027607 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSN 157 (221)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~ 157 (221)
|++++|+|+++..++..+..|+..+.... .+.|+++|+||+|+.+.....+...... ..++.++++||++|
T Consensus 92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (190)
T 2h57_A 92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKG 171 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence 99999999999999999888888776543 4799999999999976443333333332 24678999999999
Q ss_pred CChHHHHHHHHHHHh
Q 027607 158 YNFEKPFLYLARKLA 172 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~ 172 (221)
.|++++|++|.+.+.
T Consensus 172 ~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 172 EGLQEGVDWLQDQIQ 186 (190)
T ss_dssp BTHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998753
No 80
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.97 E-value=4.4e-30 Score=191.32 Aligned_cols=163 Identities=33% Similarity=0.536 Sum_probs=138.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc----------EEEEEEEecCCccccccccc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRFYCWDTAGQEKFGGLRD 80 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~i~~~D~~g~~~~~~~~~ 80 (221)
.+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+.+. .+.+.+|||||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 35699999999999999999999988887777777777776666666665 78999999999999988889
Q ss_pred cccccccEEEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccC
Q 027607 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKS 156 (221)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~ 156 (221)
.+++.+|++++|||+++..++..+..|+..+.... .+.|+++|+||+|+... .. ..+...++...++.++++||++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 182 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT 182 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCC
Confidence 99999999999999999999999988888776543 57899999999998653 22 3445577778889999999999
Q ss_pred CCChHHHHHHHHHHHhC
Q 027607 157 NYNFEKPFLYLARKLAG 173 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~ 173 (221)
|.|++++|.+|.+.+..
T Consensus 183 g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 183 GQNVEKAVETLLDLIMK 199 (217)
T ss_dssp TBTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998765
No 81
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.5e-29 Score=180.14 Aligned_cols=160 Identities=25% Similarity=0.426 Sum_probs=133.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
+.+||+++|++|||||||+++++.+.+...+.++.+.+.. .....++....+.+|||||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 4699999999999999999999988877667777765543 345567777899999999999888888889999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~ 166 (221)
|+|++++.++..+..|+..+.... .+.|+++|+||+|+... ... .+...++...+++++++|+++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 999999999999888887776643 47999999999998653 222 3445667777899999999999999999999
Q ss_pred HHHHHh
Q 027607 167 LARKLA 172 (221)
Q Consensus 167 l~~~l~ 172 (221)
|.+.+.
T Consensus 161 l~~~~~ 166 (172)
T 2erx_A 161 LLNLEK 166 (172)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 998543
No 82
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=9e-30 Score=184.55 Aligned_cols=158 Identities=22% Similarity=0.312 Sum_probs=124.6
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d 87 (221)
....+.+||+|+|.+|||||||+++|+.+.+ ..+.++.+.+..... + ++..+.+|||||++.+...+..++.++|
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~--~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIV--I--NNTRFLMWDIGGQESLRSSWNTYYTNTE 90 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEE--E--TTEEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEE--E--CCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 4566789999999999999999999988877 566677775544333 3 3478999999999999999999999999
Q ss_pred EEEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCCh
Q 027607 88 CAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv 160 (221)
++++|+|+++..++..+..|+..+... ..+.|+++|+||+|+.+.....+..... ...++.++++||++|.|+
T Consensus 91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi 170 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 170 (181)
T ss_dssp EEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence 999999999999999988888877654 3689999999999997643222222221 234568999999999999
Q ss_pred HHHHHHHHHH
Q 027607 161 EKPFLYLARK 170 (221)
Q Consensus 161 ~~~~~~l~~~ 170 (221)
+++|++|.+.
T Consensus 171 ~~l~~~l~~~ 180 (181)
T 2h17_A 171 CQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999998763
No 83
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=1.4e-29 Score=184.61 Aligned_cols=161 Identities=22% Similarity=0.382 Sum_probs=130.2
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
...+.+||+|+|++|||||||+++|+.+.+...+.++.+.++... ....+.+.+|||||++.+...+..+++.+|+
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQPRFRSMWERYCRGVSA 93 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE----EETTEEEEEEEECCSHHHHTTHHHHHTTCSE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHccCCE
Confidence 455689999999999999999999998888777778888766542 3356889999999999999999999999999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHH-----HhhcCCeEEEecccCCCChH
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~gv~ 161 (221)
+++|+|+++..++..+..|+..+... ..+.|+++|+||+|+.+.....+.... ....++.++++||++|.|++
T Consensus 94 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 94 IVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 99999999999999988888777553 358999999999999764322222211 22345689999999999999
Q ss_pred HHHHHHHHHHhC
Q 027607 162 KPFLYLARKLAG 173 (221)
Q Consensus 162 ~~~~~l~~~l~~ 173 (221)
++|.+|.+.+..
T Consensus 174 ~l~~~l~~~~~~ 185 (188)
T 1zd9_A 174 ITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999986543
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=1.7e-29 Score=185.65 Aligned_cols=157 Identities=17% Similarity=0.233 Sum_probs=119.2
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
...+.++|+++|++|||||||++++..+.+ ..+.++.+.+.. .+.+++ +.+.+|||||++.++..+..+++.+|+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~t~~~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 95 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAING 95 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCC-CccCCCCCceeE--EEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCE
Confidence 346779999999999999999999887765 345667665533 333443 789999999999999999999999999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHHh-----------------hcCCeE
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----------------KKNLQY 149 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----------------~~~~~~ 149 (221)
+++|+|++++.++..+..|+..+... ..+.|+++|+||+|+.+.....+...... ..++.+
T Consensus 96 ~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 96 IVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 99999999999999999998887653 35899999999999976333333333332 135679
Q ss_pred EEecccCCCChHHHHHHHHHH
Q 027607 150 YEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 150 ~~~s~~~~~gv~~~~~~l~~~ 170 (221)
+++||++|.|++++|.+|.+.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999999864
No 85
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5e-29 Score=184.57 Aligned_cols=163 Identities=20% Similarity=0.308 Sum_probs=129.5
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCcc--CCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc-cccccccccccc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHG 86 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~-~~~~~~~~~~~~ 86 (221)
..+.+||+|+|++|||||||+++|+.... ...+ ++.+.+.....+.+++..+.+.+|||+|.+. ...+...+++.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 34679999999999999999999875332 3332 3466666667777888888999999999876 455667788999
Q ss_pred cEEEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCC-cccc-HHHHHHHhhcCCeEEEecccCCCChHH
Q 027607 87 QCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~ 162 (221)
+++++|||+++..+|+.+..|+..+... ..+.|+++|+||+|+.+ +.+. .+...++...+++++++||++|.|+++
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999998877643 35799999999999864 3333 334456677789999999999999999
Q ss_pred HHHHHHHHHhC
Q 027607 163 PFLYLARKLAG 173 (221)
Q Consensus 163 ~~~~l~~~l~~ 173 (221)
+|.+|++.+..
T Consensus 193 lf~~l~~~i~~ 203 (211)
T 2g3y_A 193 LFEGIVRQVRL 203 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998743
No 86
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.7e-31 Score=196.50 Aligned_cols=165 Identities=30% Similarity=0.548 Sum_probs=134.1
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
...+.+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 34567999999999999999999988888777777777878888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCccc--cHHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~ 165 (221)
+++|||+++..++..+..|+..+.... .+.|+++|+||+|+.+... ..+...++...+++++++||++|.|++++|.
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~ 188 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 188 (199)
T ss_dssp EEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999999999998886654 4789999999999865332 2345567778889999999999999999999
Q ss_pred HHHHHHhC
Q 027607 166 YLARKLAG 173 (221)
Q Consensus 166 ~l~~~l~~ 173 (221)
+|++.+..
T Consensus 189 ~l~~~l~~ 196 (199)
T 3l0i_B 189 TMAAEIKK 196 (199)
T ss_dssp HHTTTTTT
T ss_pred HHHHHHHH
Confidence 99886644
No 87
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=5e-29 Score=182.05 Aligned_cols=157 Identities=18% Similarity=0.288 Sum_probs=123.2
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
...+.++|+++|++|||||||++++..+.+. .+.++.+.+.. .+.++ +..+.+|||||++.++..+..+++.+|+
T Consensus 19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 1m2o_B 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSE--ELAIG--NIKFTTFDLGGHIQARRLWKDYFPEVNG 93 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEE--EEEET--TEEEEEEECCCSGGGTTSGGGGCTTCCE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeE--EEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 3467799999999999999999998887764 45667665433 33344 3889999999999999999999999999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHHh------------hcCCeEEEecc
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR------------KKNLQYYEISA 154 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~------------~~~~~~~~~s~ 154 (221)
+++|+|++++.++..+..|+..+... ..+.|+++|+||+|+.+.....+...... ..+++++++||
T Consensus 94 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 94 IVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 99999999999999999888887653 35899999999999976333333333322 24568999999
Q ss_pred cCCCChHHHHHHHHHH
Q 027607 155 KSNYNFEKPFLYLARK 170 (221)
Q Consensus 155 ~~~~gv~~~~~~l~~~ 170 (221)
++|.|++++|++|.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999998763
No 88
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=1.6e-28 Score=175.90 Aligned_cols=159 Identities=21% Similarity=0.318 Sum_probs=127.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.++|+|+|++|||||||+++++.+.+. .+.++.+...... .+ ....+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~--~~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETV--TY--KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEE--EE--TTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEEE--EE--CCEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 45799999999999999999998887764 3456666544332 33 3578999999999999999999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCccccHHHH-----HHHhhcCCeEEEecccCCCChHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~gv~~~ 163 (221)
+|+|++++.++.....|+..+.... .+.|+++|+||+|+.+.....+.. ..+...+++++++|+++|.|++++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA 159 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHH
Confidence 9999999999988888887765532 589999999999997643222221 223345678999999999999999
Q ss_pred HHHHHHHHhCC
Q 027607 164 FLYLARKLAGD 174 (221)
Q Consensus 164 ~~~l~~~l~~~ 174 (221)
|.+|.+.+.+.
T Consensus 160 ~~~l~~~i~~~ 170 (171)
T 1upt_A 160 MEWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhhc
Confidence 99999987653
No 89
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=8e-29 Score=181.26 Aligned_cols=160 Identities=21% Similarity=0.313 Sum_probs=121.2
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d 87 (221)
....+.+||+|+|++|||||||+++++.+.+.. +.++.+.... .+ ......+.+|||||++.+...+..++.++|
T Consensus 24 ~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (192)
T 2b6h_A 24 IFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TV--EYKNICFTVWDVGGQDKIRPLWRHYFQNTQ 98 (192)
T ss_dssp TTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEEEE--EE--EETTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred hccCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCceeEE--EE--EECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 345688999999999999999999988777653 3455553322 22 224588999999999999999899999999
Q ss_pred EEEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHH-----HHhhcCCeEEEecccCCCCh
Q 027607 88 CAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~gv 160 (221)
++++|+|++++.++..+..|+..+... ..+.|+++|+||+|+.+.....+... .+...+++++++||++|.|+
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 999999999999999988888877553 25899999999999976432222221 12234567999999999999
Q ss_pred HHHHHHHHHHHh
Q 027607 161 EKPFLYLARKLA 172 (221)
Q Consensus 161 ~~~~~~l~~~l~ 172 (221)
+++|.+|++.+.
T Consensus 179 ~~l~~~l~~~i~ 190 (192)
T 2b6h_A 179 YDGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 90
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.96 E-value=3.6e-28 Score=177.80 Aligned_cols=163 Identities=20% Similarity=0.325 Sum_probs=126.5
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcC--ccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc-cccccccccccc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHG 86 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~-~~~~~~~~~~~~ 86 (221)
..+.+||+++|++|||||||+++|+.. .+...+ ++.+.+.....+.+++..+.+.+|||+|.+. ...++..+++.+
T Consensus 3 ~~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~ 81 (192)
T 2cjw_A 3 GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 81 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccC
Confidence 356799999999999999999998753 233332 3355566666777888888999999999766 455667788899
Q ss_pred cEEEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCC-cccc-HHHHHHHhhcCCeEEEecccCCCChHH
Q 027607 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~ 162 (221)
+++++|||+++..+|..+..|+..+.... .+.|+++|+||+|+.. +... .+...++...+++++++||++|.|+++
T Consensus 82 ~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~ 161 (192)
T 2cjw_A 82 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKE 161 (192)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHH
Confidence 99999999999999999998988776542 4789999999999864 2332 334456667788999999999999999
Q ss_pred HHHHHHHHHhC
Q 027607 163 PFLYLARKLAG 173 (221)
Q Consensus 163 ~~~~l~~~l~~ 173 (221)
+|.+|++.+..
T Consensus 162 lf~~l~~~~~~ 172 (192)
T 2cjw_A 162 LFEGIVRQVRL 172 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998743
No 91
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=6.6e-29 Score=180.05 Aligned_cols=158 Identities=17% Similarity=0.310 Sum_probs=124.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.++|+++|++|||||||++++..+.+ ..+.++.|.+... +.++ .+.+.+|||||++.++..+..++..+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~~~--~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKS--VQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEEEE--EEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEEEE--EEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 5789999999999999999999776643 4556677754433 3333 578999999999999888889999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHH-----HhhcCCeEEEecccCCCChHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~gv~~~ 163 (221)
+|+|++++.++..+..|+..+... ..+.|+++|+||+|+.+.....+.... ....++.++++||++|.|++++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 168 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDG 168 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHH
Confidence 999999999999888888776543 358999999999999764433222221 1234568999999999999999
Q ss_pred HHHHHHHHhC
Q 027607 164 FLYLARKLAG 173 (221)
Q Consensus 164 ~~~l~~~l~~ 173 (221)
|.+|.+.+.+
T Consensus 169 ~~~l~~~~~~ 178 (181)
T 1fzq_A 169 MNWVCKNVNA 178 (181)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHHHHh
Confidence 9999986543
No 92
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=8.9e-29 Score=176.19 Aligned_cols=155 Identities=24% Similarity=0.322 Sum_probs=121.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (221)
+||+++|++|||||||+++++.+.+.. +.++.+.... .+......+.+|||||++.+...+..+++++|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEE----EEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEE----EEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999998877654 4556653322 23335578999999999999888888999999999999
Q ss_pred ECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHH-----HHhhcCCeEEEecccCCCChHHHHHH
Q 027607 94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~gv~~~~~~ 166 (221)
|++++.++..+..|+..+... ..+.|+++|+||+|+.+.....+... .+...+++++++||++|.|++++|++
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 155 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHH
Confidence 999999999888888777553 35899999999999976432222221 12234567999999999999999999
Q ss_pred HHHHHhC
Q 027607 167 LARKLAG 173 (221)
Q Consensus 167 l~~~l~~ 173 (221)
|.+.+.+
T Consensus 156 l~~~i~~ 162 (164)
T 1r8s_A 156 LSNQLRN 162 (164)
T ss_dssp HHHHC--
T ss_pred HHHHHhh
Confidence 9987643
No 93
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=9e-29 Score=179.30 Aligned_cols=158 Identities=20% Similarity=0.287 Sum_probs=123.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.++|+++|++|||||||+++++.+.+ ..+.++.+...... .+. +..+.+|||||++.+...+..++..+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~--~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETL--SYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEE--EET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEE--EEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5789999999999999999999887776 56667777544333 333 478999999999999999999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~~ 163 (221)
+|+|++++.++..+..|+..+... ..+.|+++|+||+|+.+.....+..... ...+++++++||++|.|++++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEG 170 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence 999999999999988888887654 3589999999999997643333322222 223457999999999999999
Q ss_pred HHHHHHHHhC
Q 027607 164 FLYLARKLAG 173 (221)
Q Consensus 164 ~~~l~~~l~~ 173 (221)
+++|.+.+.+
T Consensus 171 ~~~l~~~~~~ 180 (183)
T 1moz_A 171 LDWLIDVIKE 180 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999997753
No 94
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=2.2e-28 Score=178.37 Aligned_cols=159 Identities=19% Similarity=0.261 Sum_probs=126.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
.+.+||+|+|++|||||||+++++.+.+.. +.++.+...... .. ....+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~--~~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNLETL--QY--KNISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCEEEE--EE--TTEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEEEEE--EE--CCEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 678999999999999999999987776643 556666443332 22 3578999999999999999999999999999
Q ss_pred EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCccccHHHH-----HHHhhcCCeEEEecccCCCChHHH
Q 027607 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~gv~~~ 163 (221)
+|+|++++.++.....|+..+.... .+.|+++|+||+|+.+.....+.. ..+...+++++++||++|.|++++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEG 174 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHH
Confidence 9999999999998888887765532 589999999999997643222222 122334668999999999999999
Q ss_pred HHHHHHHHhCC
Q 027607 164 FLYLARKLAGD 174 (221)
Q Consensus 164 ~~~l~~~l~~~ 174 (221)
+++|.+.+.+.
T Consensus 175 ~~~l~~~i~~~ 185 (189)
T 2x77_A 175 MDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999987654
No 95
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=5.1e-29 Score=181.07 Aligned_cols=162 Identities=19% Similarity=0.331 Sum_probs=121.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC--ccCCcccCCcceeeeeeEEEe---cCcEEEEEEEecCCcccccccccccccccc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFT---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d 87 (221)
++||+|+|++|||||||+++|+.. .+...+.++.+.++......+ .+..+.+.+|||+|++.+..++..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999998874 344556677777766555433 234678999999999999888888999999
Q ss_pred EEEEEEECCCh-hhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc-----HHHHHHHhhcCCe----EEEecccCC
Q 027607 88 CAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-----AKQVTFHRKKNLQ----YYEISAKSN 157 (221)
Q Consensus 88 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~----~~~~s~~~~ 157 (221)
++++|||++++ .++..+..|+..+.....+.|+++|+||+|+...... .....++...++. ++++||++|
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEE 161 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSC
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccC
Confidence 99999999997 4789999999988776668999999999998754322 1223455556675 999999999
Q ss_pred C-ChHHHHHHHHHHHhCC
Q 027607 158 Y-NFEKPFLYLARKLAGD 174 (221)
Q Consensus 158 ~-gv~~~~~~l~~~l~~~ 174 (221)
. |+.+++..|.+.+...
T Consensus 162 ~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 162 SDALAKLRKTIINESLNF 179 (184)
T ss_dssp CHHHHHHHHHHHHHHHCC
T ss_pred chhHHHHHHHHHHHHhcc
Confidence 7 9999999999877653
No 96
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=1.7e-28 Score=180.10 Aligned_cols=162 Identities=15% Similarity=0.167 Sum_probs=118.3
Q ss_pred CCcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeee--eeEEEec-CcEEEEEEEecCCcccccccc---
Q 027607 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--PLDFFTN-CGKIRFYCWDTAGQEKFGGLR--- 79 (221)
Q Consensus 6 ~~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~i~~~D~~g~~~~~~~~--- 79 (221)
......+.+||+++|++|||||||++++. +.+... ++.+.+.. .....+. +..+.+.+|||+|++.+....
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 89 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVF-HKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY 89 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHH-SCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHH-hcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc
Confidence 34566788999999999999999999755 444333 33333333 3333333 566899999999999987776
Q ss_pred ccccccccEEEEEEECCCh--hhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc--------cc-HHHHHHHh----h
Q 027607 80 DGYYIHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------VK-AKQVTFHR----K 144 (221)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--------~~-~~~~~~~~----~ 144 (221)
..+++++|++++|||+++. .++..+..|+..+.....+.|+++|+||+|+.+.. +. .....++. .
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence 7899999999999999997 56666667777765556799999999999975421 11 12234455 5
Q ss_pred cCCeEEEecccCCCChHHHHHHHHHHH
Q 027607 145 KNLQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 145 ~~~~~~~~s~~~~~gv~~~~~~l~~~l 171 (221)
.++.++++||++ .|++++|..|++.+
T Consensus 170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 170 LHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp SCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CCcceEEEEech-hhHHHHHHHHHHHh
Confidence 678999999999 99999999999865
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.95 E-value=3e-27 Score=186.64 Aligned_cols=163 Identities=25% Similarity=0.443 Sum_probs=137.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i 90 (221)
...++|+++|.+|||||||+++++.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 4569999999999999999999998888777777776444 445667778889999999999999999999999999999
Q ss_pred EEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCc-------------cc-cHHHHHHHhhcCC-eEEEecc
Q 027607 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKNL-QYYEISA 154 (221)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~-~~~~~~~~~~~~~-~~~~~s~ 154 (221)
+|||++++.++..+. .|+..+.....+.|+++|+||+|+.+. .. ..+...++...++ +++++||
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 999999999999887 688888777678999999999998542 12 2344566777776 8999999
Q ss_pred cCCCChHHHHHHHHHHHhCC
Q 027607 155 KSNYNFEKPFLYLARKLAGD 174 (221)
Q Consensus 155 ~~~~gv~~~~~~l~~~l~~~ 174 (221)
++|.|++++|.+|.+.+...
T Consensus 312 ~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC-
T ss_pred CCCcCHHHHHHHHHHHHhcC
Confidence 99999999999999987653
No 98
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.95 E-value=9.1e-27 Score=171.21 Aligned_cols=162 Identities=33% Similarity=0.571 Sum_probs=137.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
..++|+|+|++|||||||+++++...+...+.++.+.+.....+.+++..+.+.+||++|++.++..+..++..++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 46999999999999999999999888777777888888877788888888899999999999988888888999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
|+|+++..++..+..|+..+.... ...|+++|+||+|+.... ...++..++...++.++++|++++.|+.++|++|.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999888887776543 478999999999986532 23445677778889999999999999999999999
Q ss_pred HHHhC
Q 027607 169 RKLAG 173 (221)
Q Consensus 169 ~~l~~ 173 (221)
+.+..
T Consensus 164 ~~~~~ 168 (199)
T 2f9l_A 164 TEIYR 168 (199)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98765
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=3.3e-30 Score=190.30 Aligned_cols=162 Identities=27% Similarity=0.471 Sum_probs=131.7
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
...+.+||+|+|.+|||||||+++|+.+.+...+.++.+... .....+++..+.+.+|||||++.+...+..+++++|+
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 345789999999999999999999988887666666665333 3344556667888999999999999999999999999
Q ss_pred EEEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc--------------ccHHHHHHHhhcCC-eEEEe
Q 027607 89 AIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKNL-QYYEI 152 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~--------------~~~~~~~~~~~~~~-~~~~~ 152 (221)
+++|||++++.++..+. .|+..+.....+.|+++|+||+|+.+.. ...+...++...++ +++++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 99999999999999886 7887777666689999999999986532 11233345556666 89999
Q ss_pred cccCCCChHHHHHHHHHHH
Q 027607 153 SAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 153 s~~~~~gv~~~~~~l~~~l 171 (221)
||++|.|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999998764
No 100
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.95 E-value=2.8e-26 Score=167.58 Aligned_cols=160 Identities=32% Similarity=0.569 Sum_probs=138.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
..++|+|+|++|||||||+++++...+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..++..++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 45899999999999999999999888877788899888888888888888889999999999988888889999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
|+|+++..+++.+..|+..+.... ...|+++++||+|+.+.. ....+..++...++.++++|++++.|+.++|+.|.
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999998888887765543 478999999999986532 23445677778889999999999999999999998
Q ss_pred HHH
Q 027607 169 RKL 171 (221)
Q Consensus 169 ~~l 171 (221)
+.+
T Consensus 188 ~~i 190 (191)
T 1oix_A 188 TEI 190 (191)
T ss_dssp HHH
T ss_pred HHh
Confidence 865
No 101
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=3.7e-27 Score=185.70 Aligned_cols=161 Identities=23% Similarity=0.311 Sum_probs=120.9
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
...+.+||+|+|.+|||||||+++|+.+.+... .+|.+..... +....+.+.+|||||++.+..++..+++.+|+
T Consensus 161 ~~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~----~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 235 (329)
T 3o47_A 161 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 235 (329)
T ss_dssp --CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEE----EEETTEEEEEEECC-----CCSHHHHHTTEEE
T ss_pred cccCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEE----EecCcEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 345778999999999999999999887776443 2455444332 33356889999999999999999999999999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCccccHHHHHH-----HhhcCCeEEEecccCCCChH
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~gv~ 161 (221)
+++|||+++..++..+..|+..+.... .+.|+++|+||+|+.+.....+.... ....+++++++||++|.|++
T Consensus 236 vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 236 LIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp EEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence 999999999999998888777765432 58999999999999765433332222 22345679999999999999
Q ss_pred HHHHHHHHHHhCC
Q 027607 162 KPFLYLARKLAGD 174 (221)
Q Consensus 162 ~~~~~l~~~l~~~ 174 (221)
++|++|.+.+.+.
T Consensus 316 el~~~l~~~l~~~ 328 (329)
T 3o47_A 316 EGLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987653
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.5e-27 Score=180.57 Aligned_cols=164 Identities=21% Similarity=0.266 Sum_probs=121.4
Q ss_pred ccCCceEEEEEcCC---------CCcHHHHHHHHhc---CccCCcccCCc-ceeeeeeEE--------------EecCcE
Q 027607 9 VDYPSFKLVIVGDG---------GTGKTTFVKRHLT---GEFEKKYEPTI-GVEVHPLDF--------------FTNCGK 61 (221)
Q Consensus 9 ~~~~~~~i~v~G~~---------gsGKStL~~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~~~ 61 (221)
...+.+||+|+|.+ |||||||+++|+. +.+...+.++. +.++....+ .+++..
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 45667999999999 9999999999998 44444444443 222221111 134567
Q ss_pred EEEEEEe-----------------------cCCccccccccccccc---------------------cccEEEEEEECCC
Q 027607 62 IRFYCWD-----------------------TAGQEKFGGLRDGYYI---------------------HGQCAIIMFDVTA 97 (221)
Q Consensus 62 ~~i~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~ 97 (221)
+.+.+|| ++|++.+..++..++. ++|++++|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 7777878888888887 7999999999999
Q ss_pred h--hhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHHhh-cCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607 98 R--LTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 98 ~--~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~gv~~~~~~l~~~l~ 172 (221)
+ .+++.+..|+..+... ..+.|+++|+||+|+.......+...++.. .++.++++||++|.|++++|.+|++.+.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 8 8999999999888664 368999999999998654333455556655 4789999999999999999999998763
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.94 E-value=1.9e-26 Score=171.24 Aligned_cols=158 Identities=19% Similarity=0.217 Sum_probs=111.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc-EEEEEEEecCCcccccc-cccccccccc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGG-LRDGYYIHGQ 87 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~D~~g~~~~~~-~~~~~~~~~d 87 (221)
..+.+||+|+|++|||||||+++|+.+.+...+.++. .... .+.+++. .+.+.+|||||++.+.. ++..+++.++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 3467999999999999999999999888766654332 2333 2445543 68899999999998887 7788899999
Q ss_pred EEEEEEECCChh-hhccHHHHHHH-HHhh---cCCCCEEEEEeCCCcCCccccHHHHH----------------------
Q 027607 88 CAIIMFDVTARL-TYKNVPTWHRD-LCRV---CENIPIVLCGNKVDVKNRQVKAKQVT---------------------- 140 (221)
Q Consensus 88 ~~i~v~d~~~~~-s~~~~~~~~~~-~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~---------------------- 140 (221)
++++|+|+++.. ++.....++.. +... ..+.|+++|+||+|+...........
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~ 160 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 160 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence 999999999854 35444444333 3321 24789999999999865432211110
Q ss_pred --------------HHh-hc--CCeEEEecccCC------CChHHHHHHHHHH
Q 027607 141 --------------FHR-KK--NLQYYEISAKSN------YNFEKPFLYLARK 170 (221)
Q Consensus 141 --------------~~~-~~--~~~~~~~s~~~~------~gv~~~~~~l~~~ 170 (221)
++. .. ++.|+++||++| .|++++|.+|++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 011 11 678999999999 9999999999875
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.94 E-value=3.7e-26 Score=164.72 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=117.4
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~ 88 (221)
...+.++|+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+++ ..+.+|||||++.+...+..++..+|+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 345789999999999999999999998877665555555555555555554 467899999999999999999999999
Q ss_pred EEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHh-------hcC--CeEEEecccCCCC
Q 027607 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR-------KKN--LQYYEISAKSNYN 159 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-------~~~--~~~~~~s~~~~~g 159 (221)
+++|+|+++........ ++..+.. .+.|+++|+||+|+..... .+...... ..+ +.++++||++|.|
T Consensus 82 ~i~v~d~~~~~~~~~~~-~l~~~~~--~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 82 VILVVAADDGVMPQTVE-AINHAKA--ANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEEEETTCCCCHHHHH-HHHHHGG--GSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEEEECCCCCcHHHHH-HHHHHHh--CCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 99999998843222211 2222222 3789999999999975321 11111111 122 5899999999999
Q ss_pred hHHHHHHHHHHHhCC
Q 027607 160 FEKPFLYLARKLAGD 174 (221)
Q Consensus 160 v~~~~~~l~~~l~~~ 174 (221)
++++|++|++.+...
T Consensus 158 v~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 158 LDHLLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999999977553
No 105
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.94 E-value=1.7e-26 Score=164.79 Aligned_cols=153 Identities=17% Similarity=0.193 Sum_probs=109.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc------ccccccc-
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYI- 84 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~------~~~~~~~- 84 (221)
+.++|+++|++|||||||+++|....+.....++.+.+.....+.+. +..+.+|||||+..+.. +...+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET--TEEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC--CcEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 46899999999999999999988765533222222222223333333 46899999999887653 2244554
Q ss_pred -cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cccHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607 85 -HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 85 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~ 162 (221)
+++++++|+|+++... ...|+..+.. .+.|+++|+||+|+... ....+...++...+++++++||++|.|+++
T Consensus 80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~ 154 (165)
T 2wji_A 80 EKPDLVVNIVDATALER---NLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEE 154 (165)
T ss_dssp HCCSEEEEEEETTCHHH---HHHHHHHHHH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHH
T ss_pred CCCCEEEEEecCCchhH---hHHHHHHHHh--cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHH
Confidence 7999999999988543 3446655544 37999999999998542 222234556667788999999999999999
Q ss_pred HHHHHHHHH
Q 027607 163 PFLYLARKL 171 (221)
Q Consensus 163 ~~~~l~~~l 171 (221)
+|.+|++.+
T Consensus 155 l~~~l~~~~ 163 (165)
T 2wji_A 155 LKKAISIAV 163 (165)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998865
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=4.3e-26 Score=189.28 Aligned_cols=163 Identities=20% Similarity=0.282 Sum_probs=127.3
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d 87 (221)
....+.+||+|+|.+|||||||+++|+.+.+. .+.+|.+.++.. +..+++.+.+|||+|++.+..++..+++.+|
T Consensus 317 ~~~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad 391 (497)
T 3lvq_E 317 GLSNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQ 391 (497)
T ss_dssp ---CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEE----EESSSCEEEEEEECCCGGGSGGGGGGGTTCC
T ss_pred cccccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEE----EEeCCEEEEEEECCCcHHHHHHHHHHhccCC
Confidence 34467899999999999999999999888754 345566655543 3335678999999999999999999999999
Q ss_pred EEEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHH-----HhhcCCeEEEecccCCCCh
Q 027607 88 CAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~gv 160 (221)
++++|||+++..+|..+..|+..+... ..++|+++|+||+|+.+.....+.... ....++.++++||++|.|+
T Consensus 392 ~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 471 (497)
T 3lvq_E 392 GLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 471 (497)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTH
T ss_pred EEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCH
Confidence 999999999999999999888877553 258999999999999764333222221 1223567999999999999
Q ss_pred HHHHHHHHHHHhCCC
Q 027607 161 EKPFLYLARKLAGDP 175 (221)
Q Consensus 161 ~~~~~~l~~~l~~~~ 175 (221)
+++|++|.+.+....
T Consensus 472 ~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 472 YEGLTWLTSNYKSKL 486 (497)
T ss_dssp HHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999765543
No 107
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=4.4e-26 Score=178.05 Aligned_cols=170 Identities=17% Similarity=0.163 Sum_probs=130.2
Q ss_pred CcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc-EEEEEEEecCCccccc---------
Q 027607 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFG--------- 76 (221)
Q Consensus 7 ~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~D~~g~~~~~--------- 76 (221)
.+.+++.-.|+++|.+|||||||+|+|++..+. ...+..+++........... ...+.+|||||.....
T Consensus 4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~-i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~ 82 (308)
T 3iev_A 4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVS-IISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSM 82 (308)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCcc-ccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHH
Confidence 345678899999999999999999998866653 44566667776665555555 7889999999986544
Q ss_pred -cccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcC-CccccHHH-HHHHhhcC--CeEEE
Q 027607 77 -GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NRQVKAKQ-VTFHRKKN--LQYYE 151 (221)
Q Consensus 77 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~-~~~~~~~~--~~~~~ 151 (221)
.....++..+|++++|+|+++..++.....|+..+... +.|+++|+||+|+. +.....+. ..+....+ ..+++
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 34456688999999999999988887777767766653 79999999999987 44433333 34444544 78999
Q ss_pred ecccCCCChHHHHHHHHHHHhCCCCCcc
Q 027607 152 ISAKSNYNFEKPFLYLARKLAGDPNLHF 179 (221)
Q Consensus 152 ~s~~~~~gv~~~~~~l~~~l~~~~~~~~ 179 (221)
+||++|.|+++++.+|.+.+...+..+.
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~~~~~~~ 188 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPEGEPLFP 188 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCBCCCSSC
T ss_pred EeCCCCCCHHHHHHHHHHhCccCCCCCC
Confidence 9999999999999999998877766543
No 108
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.94 E-value=1.2e-25 Score=168.61 Aligned_cols=162 Identities=12% Similarity=0.077 Sum_probs=111.0
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccc---------cccc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GLRD 80 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~---------~~~~ 80 (221)
+.+.++|+|+|++|||||||+++|+.+.+.. .+..+.+.......+......+.+|||||..... ....
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 103 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDV--QSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTIT 103 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTCEEE--ECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCcc--CCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHH
Confidence 3567999999999999999999988776542 2222333333222222234789999999983211 1113
Q ss_pred cccccccEEEEEEECCChhhhccH--HHHHHHHHhhcCCCCEEEEEeCCCcCCcc-ccH----HHHHHHhhcC--CeEEE
Q 027607 81 GYYIHGQCAIIMFDVTARLTYKNV--PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA----KQVTFHRKKN--LQYYE 151 (221)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~----~~~~~~~~~~--~~~~~ 151 (221)
.++..+|++++|+|+++..++... ..|+..+.....+.|+++|+||+|+.... ... ....++...+ +.+++
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 346778999999999999887622 24555554444589999999999986532 222 2334555555 88999
Q ss_pred ecccCCCChHHHHHHHHHHHhC
Q 027607 152 ISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 152 ~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
+||++|.|++++|.+|++.+..
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 109
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=8.9e-26 Score=176.33 Aligned_cols=158 Identities=20% Similarity=0.272 Sum_probs=122.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccC---CcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc-----cccccccc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE---KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-----GGLRDGYY 83 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~-----~~~~~~~~ 83 (221)
+.+||+++|++|||||||+++++.+... ..+.+|.+...... .+. +.+.+.+|||||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~--~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHL--RFL-GNMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEE--EET-TTEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEE--EeC-CceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 5689999999999999999998876321 13444555444432 233 3689999999999887 67888889
Q ss_pred ccccEEEEEEECCChhhhccHHHHHHHH---HhhcCCCCEEEEEeCCCcCCc--c------ccHHHHHHHhhcC---CeE
Q 027607 84 IHGQCAIIMFDVTARLTYKNVPTWHRDL---CRVCENIPIVLCGNKVDVKNR--Q------VKAKQVTFHRKKN---LQY 149 (221)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~---~~~~~~~p~ivv~nK~D~~~~--~------~~~~~~~~~~~~~---~~~ 149 (221)
+++|++++|||+++..+++.+..|...+ ....++.|+++|+||+|+... . ...+...++...+ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 9999999999999999999887775544 444568999999999999762 1 1234456777776 789
Q ss_pred EEecccCCCChHHHHHHHHHHHhC
Q 027607 150 YEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 150 ~~~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
+++|+++ .|+.++|..+++.+..
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTCS
T ss_pred EEeeecC-ChHHHHHHHHHHHHcC
Confidence 9999999 8999999888886644
No 110
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.93 E-value=1.7e-25 Score=163.61 Aligned_cols=157 Identities=13% Similarity=0.174 Sum_probs=108.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCC----------cccccccc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLR 79 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g----------~~~~~~~~ 79 (221)
..+.++|+|+|++|||||||+++|+.+.+...+.++.+.+........+. .+.+||||| ++.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34679999999999999999999988876667777777777666555543 589999999 55566666
Q ss_pred ccccccc---cEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHH----HHH-HHhhcCCeEEE
Q 027607 80 DGYYIHG---QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVT-FHRKKNLQYYE 151 (221)
Q Consensus 80 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~-~~~~~~~~~~~ 151 (221)
..++..+ |++++|+|+++..++.... +...+.. .+.|+++|+||+|+........ ... +....+..+++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL 173 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEE
Confidence 6777666 9999999999877665532 2222222 4789999999999976433222 111 22234678999
Q ss_pred ecccCCCChHHHHHHHHHHHh
Q 027607 152 ISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 152 ~s~~~~~gv~~~~~~l~~~l~ 172 (221)
+|+++|.|++++|++|.+.+.
T Consensus 174 ~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 174 FSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHT
T ss_pred EEccCCCCHHHHHHHHHHHhc
Confidence 999999999999999998753
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=2.4e-25 Score=161.96 Aligned_cols=159 Identities=16% Similarity=0.192 Sum_probs=116.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc------cccccc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYY 83 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~------~~~~~~ 83 (221)
.++.++|+++|++|||||||+++|+.+.+.....++.+.+.....+.. .+..+.+|||||+..+.. ++..++
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY--NGEKFKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE--TTEEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe--CCcEEEEEECCCcCccccccHHHHHHHHHH
Confidence 347799999999999999999998876543333333333333333333 347899999999887642 344455
Q ss_pred c--cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cccHHHHHHHhhcCCeEEEecccCCCCh
Q 027607 84 I--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 84 ~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~gv 160 (221)
. .++++++|+|+++ ++....|+..+.. .+.|+++|+||+|+... ........++...+++++++|+++|.|+
T Consensus 82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 82 INEKPDLVVNIVDATA---LERNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp HHHCCSEEEEEEEGGG---HHHHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred hccCCCEEEEEecchh---HHHHHHHHHHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCH
Confidence 4 4899999999876 3445566666554 37899999999998543 2333455667777899999999999999
Q ss_pred HHHHHHHHHHHhCCC
Q 027607 161 EKPFLYLARKLAGDP 175 (221)
Q Consensus 161 ~~~~~~l~~~l~~~~ 175 (221)
+++|.+|++.+....
T Consensus 157 ~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 157 EELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999876654
No 112
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=6e-26 Score=163.11 Aligned_cols=152 Identities=15% Similarity=0.146 Sum_probs=108.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceee--eeeEEEecCcEEEEEEEecCCcccccccc--------cc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV--HPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DG 81 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~D~~g~~~~~~~~--------~~ 81 (221)
+.++|+++|++|||||||+++|...... ...+..+++. ....+.+++ ..+.+|||||+....... ..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAA-IVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQ 79 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCS-CCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc-eeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHH
Confidence 5689999999999999999998765432 1222333333 333444443 468999999986532211 13
Q ss_pred ccccccEEEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCCh
Q 027607 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv 160 (221)
+++.+|++++|+|+++..++. ...|+..+.... .+.|+++|+||+|+.+... .++...+.+++++||++|.|+
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~SA~~g~gv 153 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMSEVNGHALIRLSARTGEGV 153 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEEEETTEEEEECCTTTCTTH
T ss_pred HHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-----hhhhccCCceEEEeCCCCCCH
Confidence 578999999999999988876 346766665543 4799999999999854321 122334678999999999999
Q ss_pred HHHHHHHHHHHh
Q 027607 161 EKPFLYLARKLA 172 (221)
Q Consensus 161 ~~~~~~l~~~l~ 172 (221)
+++|.+|.+.+.
T Consensus 154 ~~l~~~l~~~~~ 165 (172)
T 2gj8_A 154 DVLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhh
Confidence 999999998753
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.93 E-value=2e-25 Score=158.27 Aligned_cols=151 Identities=20% Similarity=0.163 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc-------ccccccccccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYYIHG 86 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~-------~~~~~~~~~~~ 86 (221)
.||+++|++|||||||+++++.+.+. ......+.+.......+...+..+.+|||||.... ...+..++..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSA-VVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA 80 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCee-eccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence 58999999999999999998877642 12233333333333333223357899999998763 23345568899
Q ss_pred cEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC-eEEEecccCCCChHHHHH
Q 027607 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~gv~~~~~ 165 (221)
|++++|+|+++..+.. ..++...... .+.|+++|+||+|+.+.. .+...++ ..++ +++++|+++|.|++++|.
T Consensus 81 ~~~i~v~d~~~~~~~~--~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~--~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~ 154 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQA--DYEVAEYLRR-KGKPVILVATKVDDPKHE--LYLGPLY-GLGFGDPIPTSSEHARGLEELLE 154 (161)
T ss_dssp SEEEEEEESSSCCCHH--HHHHHHHHHH-HTCCEEEEEECCCSGGGG--GGCGGGG-GGSSCSCEECBTTTTBSHHHHHH
T ss_pred CEEEEEEECCCcccHh--HHHHHHHHHh-cCCCEEEEEECcccccch--HhHHHHH-hCCCCCeEEEecccCCChHHHHH
Confidence 9999999999864332 2222222221 379999999999987652 2223334 5566 799999999999999999
Q ss_pred HHHHHH
Q 027607 166 YLARKL 171 (221)
Q Consensus 166 ~l~~~l 171 (221)
+|.+.+
T Consensus 155 ~l~~~l 160 (161)
T 2dyk_A 155 AIWERL 160 (161)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998864
No 114
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=2e-25 Score=170.15 Aligned_cols=155 Identities=12% Similarity=0.081 Sum_probs=118.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc------cccc-
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------DGYY- 83 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~------~~~~- 83 (221)
.+.++|+++|++|||||||+|+|++..+. ....+|++.......+...+..+.+|||||...+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~--~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQY--VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEE--EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 45799999999999999999998876653 23344666666666665556899999999988776533 4455
Q ss_pred -ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cccHHHHHHHhhcCCeEEEecccCCCChH
Q 027607 84 -IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 84 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~gv~ 161 (221)
..+|++++|+|+++..+.. .|...+... +.|+++|+||+|+... ....+...++...+++++++||++|.|++
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~--~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~ 155 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILEM--EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLE 155 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHTT--TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHH
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHhc--CCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHH
Confidence 5899999999999865432 344444433 7999999999998542 23334556777889999999999999999
Q ss_pred HHHHHHHHHHh
Q 027607 162 KPFLYLARKLA 172 (221)
Q Consensus 162 ~~~~~l~~~l~ 172 (221)
++|.+|.+.+.
T Consensus 156 el~~~i~~~~~ 166 (258)
T 3a1s_A 156 ELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999999765
No 115
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.93 E-value=5.1e-26 Score=176.52 Aligned_cols=152 Identities=14% Similarity=0.123 Sum_probs=111.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCC---cccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc---ccccccccccE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEK---KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---LRDGYYIHGQC 88 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~---~~~~~~~~~d~ 88 (221)
||+++|+.|||||||++++..+.... .+.+|.|..... +. ..+.+++|||+|+++++. .+..|++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999866543322 245666665543 22 347899999999999964 35789999999
Q ss_pred EEEEEECCChhhhccHH---HHHHHHHhhcCCCCEEEEEeCCCcCCcc--------ccHH-HHHHHhh----cCCeEEEe
Q 027607 89 AIIMFDVTARLTYKNVP---TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------VKAK-QVTFHRK----KNLQYYEI 152 (221)
Q Consensus 89 ~i~v~d~~~~~s~~~~~---~~~~~~~~~~~~~p~ivv~nK~D~~~~~--------~~~~-~~~~~~~----~~~~~~~~ 152 (221)
+++|||+++. .++... .|+..+....++.|+++|+||+|+.... +..+ ..+++.. .++.|+++
T Consensus 76 ~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999998 333333 3344444455789999999999996532 2222 2344553 57899999
Q ss_pred cccCCCChHHHHHHHHHHHhC
Q 027607 153 SAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 153 s~~~~~gv~~~~~~l~~~l~~ 173 (221)
||++ .++.++|..|++.+.+
T Consensus 155 SAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSST
T ss_pred ccCC-CcHHHHHHHHHHHHHh
Confidence 9998 5899999999987654
No 116
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=5.3e-25 Score=171.14 Aligned_cols=164 Identities=19% Similarity=0.119 Sum_probs=116.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc--------ccccccc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRDGY 82 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~--------~~~~~~~ 82 (221)
.+..+|+++|.+|||||||+|+|+...+. ...+.++++.......+......+.+|||||.... ......+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~-ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVA-PISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCcee-eecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 46778999999999999999998876653 23344455555544444445678999999998653 3344567
Q ss_pred cccccEEEEEEECCChhhhccHHHHH-HHHHhhcCCCCEEEEEeCCCcCCccc-cHHHHHHHhhcCCeEEEecccCCCCh
Q 027607 83 YIHGQCAIIMFDVTARLTYKNVPTWH-RDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~gv 160 (221)
++.+|++++|+|+++..+.. ..|+ ..+.....+.|+++|+||+|+..... ..+..... .....++++||++|.|+
T Consensus 84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~iSA~~g~gv 160 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL-LPEAEPRMLSALDERQV 160 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT-STTSEEEECCTTCHHHH
T ss_pred HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh-cCcCcEEEEeCCCCCCH
Confidence 88999999999998874433 3443 34444335799999999999875432 11211111 22357899999999999
Q ss_pred HHHHHHHHHHHhCCCCCc
Q 027607 161 EKPFLYLARKLAGDPNLH 178 (221)
Q Consensus 161 ~~~~~~l~~~l~~~~~~~ 178 (221)
++++..|.+.+...+..+
T Consensus 161 ~~l~~~l~~~l~~~~~~y 178 (301)
T 1wf3_A 161 AELKADLLALMPEGPFFY 178 (301)
T ss_dssp HHHHHHHHTTCCBCCCSS
T ss_pred HHHHHHHHHhcccCCCCC
Confidence 999999998776665443
No 117
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.92 E-value=2.3e-25 Score=186.29 Aligned_cols=165 Identities=21% Similarity=0.294 Sum_probs=122.1
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEE--------EecCcEEEEEEEecCCccccccccc
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF--------FTNCGKIRFYCWDTAGQEKFGGLRD 80 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~D~~g~~~~~~~~~ 80 (221)
...+.+||+++|.+|||||||+++++.+.+...+.++.+.+...... ...+..+.+.+|||||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 45678999999999999999999999888877777888776664421 1223467899999999999999999
Q ss_pred cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCC
Q 027607 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNY 158 (221)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~ 158 (221)
.+++.+|++++|+|+++. +....|...+.....+.|+++|+||+|+.... . ..+....+...+++++++||++|.
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD 193 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence 999999999999998764 56778888888877789999999999986532 2 233456667778899999999999
Q ss_pred ChHHHHHHHHHHHhCCCC
Q 027607 159 NFEKPFLYLARKLAGDPN 176 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~ 176 (221)
|+++++.+|++.+...+.
T Consensus 194 gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 194 GVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp -CTTHHHHHHHHHTCTTS
T ss_pred CHHHHHHHHHHHHhcccc
Confidence 999999999998877654
No 118
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.92 E-value=1.4e-24 Score=158.53 Aligned_cols=159 Identities=14% Similarity=0.167 Sum_probs=112.3
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCC----------cccccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGG 77 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g----------~~~~~~ 77 (221)
......++|+|+|++|||||||+++|+.+. ...+.++.+.+.......... .+.+||||| ++.+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHH
Confidence 344577999999999999999999988776 445566777666655444443 478999999 445555
Q ss_pred ccccccccc---cEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH----HHHHHHhh-cCCeE
Q 027607 78 LRDGYYIHG---QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRK-KNLQY 149 (221)
Q Consensus 78 ~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----~~~~~~~~-~~~~~ 149 (221)
++..+++.+ +++++|+|+++..+.... .+...+... +.|+++|+||+|+.+..... +....+.. ..+++
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKSL--NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTI 170 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCE
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHHc--CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCce
Confidence 566666655 999999999875433222 112222222 79999999999986543222 22233444 34789
Q ss_pred EEecccCCCChHHHHHHHHHHHhC
Q 027607 150 YEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 150 ~~~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
+++||++|.|++++|++|.+.+.+
T Consensus 171 ~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 171 IPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEEecCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999997643
No 119
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.92 E-value=2.4e-25 Score=162.09 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=111.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCC-----------ccccccccccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG-----------QEKFGGLRDGY 82 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g-----------~~~~~~~~~~~ 82 (221)
+||+|+|++|||||||+++++.+.+...+.+ +.+.......+. .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRP--GVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSST--TCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCC--CccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998876544443 444444444433 588999999 45556666667
Q ss_pred ccc-ccEEEEEEECCChhhhccH-HHHHHH--------HHh--hcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC---
Q 027607 83 YIH-GQCAIIMFDVTARLTYKNV-PTWHRD--------LCR--VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--- 147 (221)
Q Consensus 83 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--- 147 (221)
++. ++++++|+++.+..++..+ ..|... +.. ...+.|+++|+||+|+.... ......++...++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~ 154 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLS 154 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGG
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhh
Confidence 776 7777777777777777665 455432 111 12489999999999997654 3334455555555
Q ss_pred ----eEEEecccCCCChHHHHHHHHHHHhCCC
Q 027607 148 ----QYYEISAKSNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 148 ----~~~~~s~~~~~gv~~~~~~l~~~l~~~~ 175 (221)
.++++||++|.|++++|++|.+.+....
T Consensus 155 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 155 EIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp GHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred ccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 4799999999999999999999876544
No 120
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.92 E-value=2e-25 Score=171.62 Aligned_cols=156 Identities=14% Similarity=0.149 Sum_probs=114.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc----------cc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----------DG 81 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~----------~~ 81 (221)
++++|+++|.+|||||||+|+|++... ......|++.......+...+..+.+|||||...+.... ..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~--~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE--EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc--ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 569999999999999999999887654 233445555555555555445678999999987766321 22
Q ss_pred cc--ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cccHHHHHHHhhcCCeEEEecccCCC
Q 027607 82 YY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNY 158 (221)
Q Consensus 82 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (221)
++ ..+|++++|+|+++......+..+ +... +.|+++|+||+|+... ........+....+++++++||++|.
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~ 154 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQ---LLEL--GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGR 154 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH--TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGH
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHH---HHhc--CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 22 689999999999986654433333 3333 8999999999998543 22223445667778999999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 027607 159 NFEKPFLYLARKLAGD 174 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~ 174 (221)
|+++++.+|.+.+...
T Consensus 155 gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 155 GIEALKLAIDRYKANE 170 (274)
T ss_dssp HHHHHHHHHHTCCCCC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999998866544
No 121
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.92 E-value=9e-25 Score=163.16 Aligned_cols=161 Identities=17% Similarity=0.050 Sum_probs=114.0
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec-CcEEEEEEEecCCcc----------ccccc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQE----------KFGGL 78 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~----------~~~~~ 78 (221)
....++|+|+|.+|||||||+|+|+.+........+.+++.......+. .....+.+|||||.. .+..+
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 4467999999999999999999988776444556666666666555555 455789999999943 22344
Q ss_pred ccccccc---ccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHH----HHHHHh-------h
Q 027607 79 RDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHR-------K 144 (221)
Q Consensus 79 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~-------~ 144 (221)
...++.. +|++++|+|+++..+.. ...++..+.. .+.|+++|+||+|+........ ...... .
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~ 182 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA 182 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccC
Confidence 4455554 78899999998753322 2234444444 3789999999999876433211 112222 2
Q ss_pred cCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607 145 KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 145 ~~~~~~~~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
.+.+++++||++|.|+++++.+|.+.+..
T Consensus 183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 183 GKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp SCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 56789999999999999999999997644
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=5e-25 Score=168.89 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=116.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc------ccccccc--
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYI-- 84 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~------~~~~~~~-- 84 (221)
.++|+++|++|||||||+|+|.+... .....+|++.......+.. ...+.+|||||...+.. +...++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~--~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ--RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC--CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC--cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 58999999999999999999876543 2334557777777777766 67899999999887653 3455554
Q ss_pred cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cccHHHHHHHhhcCCeEEEecccCCCChHHH
Q 027607 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~ 163 (221)
.+|++++|+|+++..+. ..|...+.. .+.|+++|+||+|+... ........+....+++++++||++|.|++++
T Consensus 80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el 154 (272)
T 3b1v_A 80 RADSILNVVDATNLERN---LYLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQV 154 (272)
T ss_dssp CCSEEEEEEEGGGHHHH---HHHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred CCCEEEEEecCCchHhH---HHHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHH
Confidence 59999999999986543 344444443 38999999999998542 2333445667777899999999999999999
Q ss_pred HHHHHHHH
Q 027607 164 FLYLARKL 171 (221)
Q Consensus 164 ~~~l~~~l 171 (221)
|.+|.+.+
T Consensus 155 ~~~i~~~~ 162 (272)
T 3b1v_A 155 VKKAAHTT 162 (272)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHHH
Confidence 99998864
No 123
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.92 E-value=8e-24 Score=173.48 Aligned_cols=158 Identities=15% Similarity=0.070 Sum_probs=98.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc--------cccc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGYY 83 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~--------~~~~ 83 (221)
..++|+|+|.+|||||||+|+|+.... .......+++.......+...+..+.+|||||...+...+ ..++
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~-a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQER-AIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 458999999999999999999765532 2334455555555444444345789999999987655433 3468
Q ss_pred ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHH
Q 027607 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~ 163 (221)
..+|++++|+|++++.++..+..+...+.. ..+.|+++|+||+|+........ ..+......+++++||++|.|++++
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~~~piIvV~NK~Dl~~~~~~~~-~~l~~~~~~~~i~vSAktg~GI~eL 388 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAA-HPAAKFLTVANKLDRAANADALI-RAIADGTGTEVIGISALNGDGIDTL 388 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CTTSEEEEEEECTTSCTTTHHHH-HHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHh-cCCCCEEEEEECcCCCCccchhH-HHHHhcCCCceEEEEECCCCCHHHH
Confidence 899999999999999888654444333322 23799999999999875433221 2222222378999999999999999
Q ss_pred HHHHHHHHh
Q 027607 164 FLYLARKLA 172 (221)
Q Consensus 164 ~~~l~~~l~ 172 (221)
+++|.+.+.
T Consensus 389 ~~~i~~~~~ 397 (476)
T 3gee_A 389 KQHMGDLVK 397 (476)
T ss_dssp HHHHTHHHH
T ss_pred HHHHHHHHh
Confidence 999999886
No 124
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=3.6e-24 Score=164.55 Aligned_cols=158 Identities=17% Similarity=0.137 Sum_probs=113.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc------cccccc--
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYY-- 83 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~------~~~~~~-- 83 (221)
+.++|+++|++|||||||+|+|++..+.. ....+.+.......+...+..+.+|||||...+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~--~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHV--GNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEE--EECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCccc--CCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 56899999999999999999988765532 23344444444444443445799999999887665 344455
Q ss_pred ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cccHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~ 162 (221)
..+|++++|+|+++... ...|...+... ...|+++|+||+|+... ........+....+++++++|+++|.|+.+
T Consensus 80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~ 155 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR---NLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEE 155 (271)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHH
T ss_pred cCCcEEEEEecCCcchh---hHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHH
Confidence 67999999999988642 22233333332 23999999999997542 222234556777889999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 027607 163 PFLYLARKLAGDP 175 (221)
Q Consensus 163 ~~~~l~~~l~~~~ 175 (221)
++..+.+.+....
T Consensus 156 l~~~i~~~~~~~~ 168 (271)
T 3k53_A 156 LKRMIALMAEGKV 168 (271)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHhccc
Confidence 9999999876544
No 125
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.91 E-value=1.3e-24 Score=165.34 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=110.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc----------cccccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----------LRDGYY 83 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~----------~~~~~~ 83 (221)
.+|+++|.+|||||||+|+|.+.... ....++++.......+..++..+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~--v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQR--VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEE--EEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC--ccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999998766543 233445555544444443445899999999877654 344556
Q ss_pred --ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc-ccHHHHHHHhhcCCeEEEecccCCCCh
Q 027607 84 --IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 84 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~gv 160 (221)
..+|++++|+|+++..++..+..+ +.. .+.|+++|+||+|+.... .......+....+++++++||++|.|+
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~~--~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi 154 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---LFE--LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGI 154 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---HTT--SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSH
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---HHH--cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence 789999999999987655443333 222 279999999999985432 223344566777899999999999999
Q ss_pred HHHHHHHHHH
Q 027607 161 EKPFLYLARK 170 (221)
Q Consensus 161 ~~~~~~l~~~ 170 (221)
++++.+|.+.
T Consensus 155 ~el~~~i~~~ 164 (256)
T 3iby_A 155 PALQQSLLHC 164 (256)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999999886
No 126
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=4.5e-24 Score=172.29 Aligned_cols=159 Identities=18% Similarity=0.216 Sum_probs=112.3
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeee--EEEecCcEEEEEEEecCCcccccccc-------
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEKFGGLR------- 79 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~D~~g~~~~~~~~------- 79 (221)
.....++|+|+|..|+|||||+++|+...+. ......+++.... ...+... ..+.+|||||+..+..+.
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~-~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~ 107 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVS-IVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKA 107 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHH
Confidence 4556799999999999999999997766542 2233444444433 3333332 378999999998776553
Q ss_pred ccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCC
Q 027607 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN 159 (221)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g 159 (221)
..++..+|++++|+|++.. .....|+..+... +.|+++|+||+|+...........+....+++++++||++|.|
T Consensus 108 ~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~g 182 (423)
T 3qq5_A 108 RRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKG 182 (423)
T ss_dssp HHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT--TCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTS
T ss_pred HHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc--CCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 3368889999999998332 2334566666554 8999999999999776555555566667788999999999999
Q ss_pred hHHHHHHHHHHHhCC
Q 027607 160 FEKPFLYLARKLAGD 174 (221)
Q Consensus 160 v~~~~~~l~~~l~~~ 174 (221)
++++|++|.+.+...
T Consensus 183 I~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 183 FDDIGKTISEILPGD 197 (423)
T ss_dssp TTTHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999999988554
No 127
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.89 E-value=2e-22 Score=156.81 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=114.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcc---------cccccccc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE---------KFGGLRDG 81 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~---------~~~~~~~~ 81 (221)
.+..+|+++|++|||||||+|+|+..... ...+..+++.......+......+.+|||||.. .+......
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~-i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKIS-ITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEE-ECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 45678999999999999999998866542 233444555554444444456789999999987 34455567
Q ss_pred ccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC-cccc-HHHHHHHhhcCC-eEEEecccCCC
Q 027607 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNL-QYYEISAKSNY 158 (221)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~-~~~~~~~~~~~~-~~~~~s~~~~~ 158 (221)
++..+|++++|+|+++ +.....|+..... ..+.|+++|+||+|+.. +... .....+....++ .++++|+++|.
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~-~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~ 160 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR-EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL 160 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHH-SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH-hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence 7889999999999976 3333333322221 23789999999999876 2222 222334444555 69999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCc
Q 027607 159 NFEKPFLYLARKLAGDPNLH 178 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~~~ 178 (221)
|+.++++.|.+.+...+..+
T Consensus 161 ~v~~l~~~i~~~l~~~~~~~ 180 (301)
T 1ega_A 161 NVDTIAAIVRKHLPEATHHF 180 (301)
T ss_dssp THHHHHHHHHTTCCBCCCSS
T ss_pred CHHHHHHHHHHhCCcCCCCC
Confidence 99999999998776665443
No 128
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.89 E-value=1.5e-22 Score=161.26 Aligned_cols=160 Identities=19% Similarity=0.135 Sum_probs=115.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc---------cccc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------LRDG 81 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~---------~~~~ 81 (221)
...++|+++|++|||||||+++|...... .....+.+.......+......+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE--IASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE--EECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 46789999999999999999997765532 111222222222223332356799999999754321 1112
Q ss_pred ccccccEEEEEEECCChh--hhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCC
Q 027607 82 YYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN 159 (221)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g 159 (221)
+...+|++++|+|+++.. ++.....|+..+.....+.|+++|+||+|+.......+...++...+++++++||++|.|
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g 322 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTG 322 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcC
Confidence 345689999999998876 566677788777665558999999999999765433444555666788999999999999
Q ss_pred hHHHHHHHHHHHh
Q 027607 160 FEKPFLYLARKLA 172 (221)
Q Consensus 160 v~~~~~~l~~~l~ 172 (221)
+++++++|.+.+.
T Consensus 323 i~~l~~~i~~~l~ 335 (357)
T 2e87_A 323 IDLVKEEIIKTLR 335 (357)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999763
No 129
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=4.6e-24 Score=158.82 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=100.7
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCc---ccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI 84 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~ 84 (221)
....+.++|+|+|++|||||||+++|+.+.+... +.++.+ .......+.+|||||++.++..+..+++
T Consensus 7 ~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 77 (218)
T 1nrj_B 7 KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLK 77 (218)
T ss_dssp ---CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEE---------TTGGGSSCEEEECCCCGGGTHHHHHHHH
T ss_pred CccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEE---------EEeeCceEEEEECCCcHHHHHHHHHHHH
Confidence 3456789999999999999999999888775432 112211 1114567899999999999888888887
Q ss_pred c----ccEEEEEEECC-ChhhhccHHHHHHHHHhh-----cCCCCEEEEEeCCCcCCcccc--------HHHHHHHhhcC
Q 027607 85 H----GQCAIIMFDVT-ARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKN 146 (221)
Q Consensus 85 ~----~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~-----~~~~p~ivv~nK~D~~~~~~~--------~~~~~~~~~~~ 146 (221)
. ++++++|+|++ +..++.....|+..+... ..+.|+++|+||+|+...... .+...++...+
T Consensus 78 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 157 (218)
T 1nrj_B 78 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK 157 (218)
T ss_dssp HHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh
Confidence 7 89999999999 888898888888777553 258999999999999764332 22334555566
Q ss_pred CeEEEecccCCCC
Q 027607 147 LQYYEISAKSNYN 159 (221)
Q Consensus 147 ~~~~~~s~~~~~g 159 (221)
+.++++|+++|.+
T Consensus 158 ~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 158 KSLNEVERKINEE 170 (218)
T ss_dssp HHHHC--------
T ss_pred ccccccccccccc
Confidence 7889999998765
No 130
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=1.4e-22 Score=165.51 Aligned_cols=152 Identities=17% Similarity=0.201 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc---------ccccccccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---------GGLRDGYYI 84 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~---------~~~~~~~~~ 84 (221)
.+|+++|.+|||||||+|+|+.+.. ..+..++|++.......+...+..+.+|||||.+.. ...+..+++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-ceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 3799999999999999999886653 334567777776665555445567899999997642 233455789
Q ss_pred cccEEEEEEECCChhhhcc--HHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHH-HHHHhhcCC-eEEEecccCCCCh
Q 027607 85 HGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNL-QYYEISAKSNYNF 160 (221)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~~~gv 160 (221)
.+|++++|+|+++..+..+ +..|+. . .++|+++|+||+|+.... ..+. ..+. ..++ .++++||.+|.|+
T Consensus 81 ~ad~il~V~D~~~~~~~~d~~i~~~l~---~--~~~p~ilv~NK~D~~~~~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv 153 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDESLADFLR---K--STVDTILVANKAENLREF-EREVKPELY-SLGFGEPIPVSAEHNINL 153 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHHHHHHHHH---H--HTCCEEEEEESCCSHHHH-HHHTHHHHG-GGSSCSCEECBTTTTBSH
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH---H--cCCCEEEEEeCCCCcccc-HHHHHHHHH-hcCCCCEEEEeccCCCCH
Confidence 9999999999987654432 222222 2 279999999999985431 1222 3333 4555 6899999999999
Q ss_pred HHHHHHHHHHHhC
Q 027607 161 EKPFLYLARKLAG 173 (221)
Q Consensus 161 ~~~~~~l~~~l~~ 173 (221)
.+++++|.+.+..
T Consensus 154 ~~L~~~i~~~l~~ 166 (439)
T 1mky_A 154 DTMLETIIKKLEE 166 (439)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc
Confidence 9999999998864
No 131
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.88 E-value=1.6e-22 Score=165.25 Aligned_cols=153 Identities=14% Similarity=0.151 Sum_probs=99.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeee--EEEecCcEEEEEEEecCCcccccccc--------cc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEKFGGLR--------DG 81 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~D~~g~~~~~~~~--------~~ 81 (221)
..++|+++|++|||||||+|+|+..... ......+++.... .+.++ +..+.+|||||.......+ ..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a-~v~~~~gtT~d~~~~~i~~~--g~~v~liDT~G~~~~~~~ve~~gi~~~~~ 299 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRA-IVTDLPGTTRDVVESQLVVG--GIPVQVLDTAGIRETSDQVEKIGVERSRQ 299 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBS-CCSCCTTCCHHHHHHEEEET--TEEEEECC--------------------C
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCeeEEEEEEEEEEC--CEEEEEEECCccccchhHHHHHHHHHHhh
Confidence 4589999999999999999998765432 1222334443332 33333 4678999999976543322 33
Q ss_pred ccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChH
Q 027607 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~ 161 (221)
++..+|++++|+|++++.+... ..|+..+ ...|+++|+||+|+...........+. ...+++++|+++|.|++
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~~~piivV~NK~Dl~~~~~~~~~~~~~--~~~~~i~iSAktg~Gi~ 372 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGD-QEIYEQV----KHRPLILVMNKIDLVEKQLITSLEYPE--NITQIVHTAAAQKQGID 372 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHH-HHHHHHH----TTSCEEEEEECTTSSCGGGSTTCCCCT--TCCCEEEEBTTTTBSHH
T ss_pred hhhcCCEEEEEeccCCCCCHHH-HHHHHhc----cCCcEEEEEECCCCCcchhhHHHHHhc--cCCcEEEEECCCCCCHH
Confidence 5788999999999998765443 2333333 357999999999987543322111111 45689999999999999
Q ss_pred HHHHHHHHHHhCC
Q 027607 162 KPFLYLARKLAGD 174 (221)
Q Consensus 162 ~~~~~l~~~l~~~ 174 (221)
+++++|.+.+...
T Consensus 373 eL~~~i~~~~~~~ 385 (462)
T 3geh_A 373 SLETAILEIVQTG 385 (462)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987654
No 132
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.88 E-value=6.6e-23 Score=168.18 Aligned_cols=153 Identities=20% Similarity=0.175 Sum_probs=108.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcc-ccccc--------ccccc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-KFGGL--------RDGYY 83 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~-~~~~~--------~~~~~ 83 (221)
.++|+++|.+|||||||+|+|+.... .......+++.+.....+..++..+.+|||||.. .+... ...++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~-a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDR-AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTB-CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCC-CccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 38999999999999999999876543 2233444555544433333345679999999987 54422 23467
Q ss_pred ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHH
Q 027607 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~ 163 (221)
..+|++++|+|++++.+++... ++..+ .+.|+++|+||+|+.......+...+. ..+.+++++||++|.|++++
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~-il~~l----~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~Gi~eL 395 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRK-ILERI----KNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGLEKL 395 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHH-HHHHH----TTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCHHHH
T ss_pred hcccEEEEEecCCCCCCHHHHH-HHHHh----cCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCCHHHH
Confidence 8999999999999887765533 22222 478999999999996542222222222 23468999999999999999
Q ss_pred HHHHHHHHh
Q 027607 164 FLYLARKLA 172 (221)
Q Consensus 164 ~~~l~~~l~ 172 (221)
+.+|.+.+.
T Consensus 396 ~~~l~~~~~ 404 (482)
T 1xzp_A 396 EESIYRETQ 404 (482)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHHHh
Confidence 999999765
No 133
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.88 E-value=1.1e-22 Score=160.21 Aligned_cols=158 Identities=18% Similarity=0.222 Sum_probs=113.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc-EEEEEEEecCCcc----ccccccccccc---cc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQE----KFGGLRDGYYI---HG 86 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~D~~g~~----~~~~~~~~~~~---~~ 86 (221)
+|+|+|.+|||||||+++|+..... ......++.......+... ...+.+|||||.. ....+...+++ .+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~--i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPK--IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCE--ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCc--cccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 6899999999999999997765431 1222222322222222222 2579999999953 33444455554 49
Q ss_pred cEEEEEEECCC---hhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCccccHHHHHHHhhcC--CeEEEecccCCC
Q 027607 87 QCAIIMFDVTA---RLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNY 158 (221)
Q Consensus 87 d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~ 158 (221)
+++++|+|+++ ..++..+..|...+..+. ..+|+++|+||+|+.... .....+..... .+++++||+++.
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--e~~~~l~~~l~~~~~v~~iSA~tg~ 315 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--ENLEAFKEKLTDDYPVFPISAVTRE 315 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--HHHHHHHHHCCSCCCBCCCSSCCSS
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--HHHHHHHHHhhcCCCEEEEECCCCc
Confidence 99999999998 778888888888887754 479999999999987543 22233344444 679999999999
Q ss_pred ChHHHHHHHHHHHhCCCC
Q 027607 159 NFEKPFLYLARKLAGDPN 176 (221)
Q Consensus 159 gv~~~~~~l~~~l~~~~~ 176 (221)
|+++++.+|.+.+...+.
T Consensus 316 gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 316 GLRELLFEVANQLENTPE 333 (342)
T ss_dssp TTHHHHHHHHHHHTSCCC
T ss_pred CHHHHHHHHHHHHhhCcc
Confidence 999999999998877654
No 134
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=1.2e-22 Score=165.89 Aligned_cols=159 Identities=15% Similarity=0.143 Sum_probs=108.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc----------cccccc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLRD 80 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~----------~~~~~~ 80 (221)
...++|+++|.+|||||||+|+|+..... ......+++.......+...+..+.+|||||+.. +...+.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~-~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERV-IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTE-EEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCce-eecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 35699999999999999999998866542 2233445555544333333345689999999732 222222
Q ss_pred -cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc--HHHH-----HHHhhcCCeEEEe
Q 027607 81 -GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQV-----TFHRKKNLQYYEI 152 (221)
Q Consensus 81 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~-----~~~~~~~~~~~~~ 152 (221)
.+++.+|++++|+|++++.++++. .|...+.. .+.|+++|+||+|+.+.... .+.. .+....+++++++
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 367889999999999998887765 45555543 48999999999998653321 1221 2223346789999
Q ss_pred cccCCCChHHHHHHHHHHHhC
Q 027607 153 SAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 153 s~~~~~gv~~~~~~l~~~l~~ 173 (221)
||++|.|++++|..+.+.+..
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999887754
No 135
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.87 E-value=6.2e-22 Score=151.23 Aligned_cols=167 Identities=9% Similarity=0.042 Sum_probs=103.2
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCcc-CCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccc-------
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD------- 80 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~------- 80 (221)
...+.++|+|+|++|||||||+++|+.... .....++ +++.......+...+..+.+|||||.........
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQ-TLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSC-CCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC-ceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 455779999999999999999999887653 2222222 1233333333333456899999999766543222
Q ss_pred ----cccccccEEEEEEECCChhhh-ccHHHHHHHHHhhcCCCCEEEEEe-CCCcCCccccH--------HHHHHHhhcC
Q 027607 81 ----GYYIHGQCAIIMFDVTARLTY-KNVPTWHRDLCRVCENIPIVLCGN-KVDVKNRQVKA--------KQVTFHRKKN 146 (221)
Q Consensus 81 ----~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~p~ivv~n-K~D~~~~~~~~--------~~~~~~~~~~ 146 (221)
.+++.+|++++|+|++..... ..+..++..+.......|.++|+| |+|+....... +........+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 176 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACG 176 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhC
Confidence 256889999999999852111 112222222221111457776666 99987543221 1112333333
Q ss_pred Ce---E--EEecccCCCChHHHHHHHHHHHhCCCC
Q 027607 147 LQ---Y--YEISAKSNYNFEKPFLYLARKLAGDPN 176 (221)
Q Consensus 147 ~~---~--~~~s~~~~~gv~~~~~~l~~~l~~~~~ 176 (221)
.. + +++||++|.|++++|.+|.+.+..++.
T Consensus 177 ~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~ 211 (260)
T 2xtp_A 177 GRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNG 211 (260)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CeEEEecCcccccccHHHHHHHHHHHHHHHHhCCC
Confidence 22 2 789999999999999999999887763
No 136
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.87 E-value=4e-21 Score=155.36 Aligned_cols=162 Identities=17% Similarity=0.102 Sum_probs=112.8
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeee-------eEEE------------ecCcEEEEEEEec
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP-------LDFF------------TNCGKIRFYCWDT 69 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~-------~~~~------------~~~~~~~i~~~D~ 69 (221)
...+.++|+++|++|+|||||+++|+...... .......+... .... .......+.+|||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSK-KLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCS-SSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCccccc-ccCccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 45678999999999999999999977532211 00000000000 0000 0112368999999
Q ss_pred CCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH----HHHhh-
Q 027607 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV----TFHRK- 144 (221)
Q Consensus 70 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~----~~~~~- 144 (221)
||++.+...+..++..+|++++|+|+++..++.....++..+... ...|+++|+||+|+.+.....+.. .+...
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence 999999888888899999999999999887666666666555443 346999999999997643222221 12211
Q ss_pred --cCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607 145 --KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 145 --~~~~~~~~s~~~~~gv~~~~~~l~~~l~ 172 (221)
..++++++||++|.|+++++++|.+.+.
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 2578999999999999999999998654
No 137
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=7.2e-23 Score=167.13 Aligned_cols=154 Identities=19% Similarity=0.171 Sum_probs=102.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcc--------ccccccccccc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDGYYI 84 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~--------~~~~~~~~~~~ 84 (221)
.++|+++|.+|||||||+|+|+.... ..+.+++|++.+.........+..+.+|||+|.+ .+...+..++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEEC-C-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 36899999999999999999776544 4567788888888877777777789999999985 45555667789
Q ss_pred cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC-eEEEecccCCCChHHH
Q 027607 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKP 163 (221)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~gv~~~ 163 (221)
.+|++++|+|++++.+... .++..+.. ..+.|+++|+||+|+..... +...+. ..++ .++++||.+|.|+.++
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~-~~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~g~gv~~L 155 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILY-RTKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLGLGDL 155 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHT-TCCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECBTTTTBTHHHH
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHH-HcCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEeCcCCCChHHH
Confidence 9999999999988765443 23333222 24789999999999865321 111222 3344 6899999999999999
Q ss_pred HHHHHHHHhC
Q 027607 164 FLYLARKLAG 173 (221)
Q Consensus 164 ~~~l~~~l~~ 173 (221)
++++.+.+..
T Consensus 156 ~~~i~~~l~~ 165 (436)
T 2hjg_A 156 LDAVAEHFKN 165 (436)
T ss_dssp HHHHHHTGGG
T ss_pred HHHHHHhcCc
Confidence 9999998754
No 138
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.87 E-value=1.6e-21 Score=154.21 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=92.4
Q ss_pred cEEEEEEEecCCccccccccccccccccEEEEEEECCC----------hhhhccHHHHHHHHHhh--cCCCCEEEEEeCC
Q 027607 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (221)
Q Consensus 60 ~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~ 127 (221)
+.+.+.+|||+|++.++.+|..++++++++|+|+|+++ ..++.....|+..+... ..+.|+++|+||+
T Consensus 191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence 46889999999999999999999999999999999998 45677777777776553 3689999999999
Q ss_pred CcCCcc-----------------ccHHHHHHHh-----------hcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607 128 DVKNRQ-----------------VKAKQVTFHR-----------KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 128 D~~~~~-----------------~~~~~~~~~~-----------~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
|+.... ...++..++. ..++.++++||++|.|++++|.++++.+.+
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence 984321 2234444443 356789999999999999999999998764
No 139
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.86 E-value=1.7e-21 Score=147.66 Aligned_cols=169 Identities=10% Similarity=-0.016 Sum_probs=105.0
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc--------ccccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLR 79 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~--------~~~~~ 79 (221)
....+.++|+++|.+|||||||+|+++............+++.......+...+..+.+|||||... +....
T Consensus 16 ~~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 16 FQGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp ----CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred ccCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 4456789999999999999999999887765443333444555554444444567899999999632 22222
Q ss_pred ccc----cccccEEEEEEECCChhhhccHHHHHHHHHhh----cCCCCEEEEEeCCCcCCcccc--------HHHHHHHh
Q 027607 80 DGY----YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNRQVK--------AKQVTFHR 143 (221)
Q Consensus 80 ~~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~--------~~~~~~~~ 143 (221)
... ...+|++++|+|++.... ....++..+... ..+.|+++++||.|+.+.... .....+..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~--~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTA--QDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCH--HHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCH--HHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHH
Confidence 222 288999999999975211 111223333322 136899999999999753321 22344555
Q ss_pred hcCCeEEEecccC-----CCChHHHHHHHHHHHhCCCCCc
Q 027607 144 KKNLQYYEISAKS-----NYNFEKPFLYLARKLAGDPNLH 178 (221)
Q Consensus 144 ~~~~~~~~~s~~~-----~~gv~~~~~~l~~~l~~~~~~~ 178 (221)
..+..++.++... +.|+.+++..|.+.+..+...+
T Consensus 174 ~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~ 213 (247)
T 3lxw_A 174 ECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAH 213 (247)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCC
Confidence 6666676665543 5899999999999887644433
No 140
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=5.8e-22 Score=162.64 Aligned_cols=160 Identities=16% Similarity=0.142 Sum_probs=108.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCC----------cccccccc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLR 79 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g----------~~~~~~~~ 79 (221)
....++|+++|.+|+|||||+++|+.... .......+++.......+...+..+.+||||| ++.+...+
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTT-EEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCc-cccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 45679999999999999999999775432 22344455555543333333345899999999 45555444
Q ss_pred c-cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc-c-HHHHHHHhh-----cCCeEEE
Q 027607 80 D-GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-K-AKQVTFHRK-----KNLQYYE 151 (221)
Q Consensus 80 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~-~~~~~~~~~-----~~~~~~~ 151 (221)
. .+++.+|++++|+|+++..... ...|...+.. .++|+++|+||+|+.+... . .+..+.+.. .++++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 3 3678899999999998854322 2334444443 4799999999999875322 1 223333332 2578999
Q ss_pred ecccCCCChHHHHHHHHHHHhC
Q 027607 152 ISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 152 ~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
+||++|.|++++|.++.+.+..
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999987744
No 141
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=146.72 Aligned_cols=167 Identities=9% Similarity=0.011 Sum_probs=103.8
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcc-----------ccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-----------KFG 76 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~-----------~~~ 76 (221)
....+.++|+|+|++|||||||+|+|+.........+..+++.......+...+..+.+|||||.. .+.
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHH
Confidence 344567999999999999999999988777654444433444444444444345689999999943 233
Q ss_pred cccccccccccEEEEEEECCChhhhccHHHHHHHHHhh---cCCCCEEEEEeCCCcCCcccc--------HHHHHHHhhc
Q 027607 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKK 145 (221)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~--------~~~~~~~~~~ 145 (221)
.....++..++++++|+|++.... ....|+..+... ....|+++|+||+|+...... .....+....
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence 333444667899999999875332 122333333221 124699999999998543221 2344556666
Q ss_pred CCeEEEecccCC-----CChHHHHHHHHHHHhCCCC
Q 027607 146 NLQYYEISAKSN-----YNFEKPFLYLARKLAGDPN 176 (221)
Q Consensus 146 ~~~~~~~s~~~~-----~gv~~~~~~l~~~l~~~~~ 176 (221)
+..++.++...+ .++.+++..+.+.+..+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g 217 (239)
T 3lxx_A 182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKE 217 (239)
T ss_dssp SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence 777777766533 6899999999888766443
No 142
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.86 E-value=1.3e-21 Score=163.97 Aligned_cols=158 Identities=14% Similarity=0.155 Sum_probs=110.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCc--cCC-----c------ccCCcceeeeeeEEEe-----cCcEEEEEEEecCCcc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGE--FEK-----K------YEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQE 73 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~--~~~-----~------~~~~~~~~~~~~~~~~-----~~~~~~i~~~D~~g~~ 73 (221)
+-.+|+|+|+.++|||||+++|+... ... . .....|.+.......+ ++..+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 35799999999999999999988621 110 0 1112344444333333 3446899999999999
Q ss_pred ccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC---eEE
Q 027607 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY 150 (221)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~ 150 (221)
++...+..+++.+|++++|+|+++..+.+....|..... .+.|+++|+||+|+.+.........+....++ .++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~---~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi 159 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME---MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAV 159 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCE
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEE
Confidence 998888889999999999999999887777777765543 37899999999999765433323344444455 489
Q ss_pred EecccCCCChHHHHHHHHHHHh
Q 027607 151 EISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 151 ~~s~~~~~gv~~~~~~l~~~l~ 172 (221)
++||++|.|+++++++|.+.+.
T Consensus 160 ~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 160 RCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp EECTTTCTTHHHHHHHHHHHSC
T ss_pred EeecccCCCchhHHHHHhhcCC
Confidence 9999999999999999998754
No 143
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.86 E-value=1.6e-22 Score=167.25 Aligned_cols=157 Identities=17% Similarity=0.152 Sum_probs=110.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
+.++|+++|++|+|||||+++|....+.....++.+.+......... .+..+.+|||||++.+..++..++..+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 45789999999999999999988765543333333322222222221 23478999999999999999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc---cHHHHHH---Hhh--cCCeEEEecccCCCChHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTF---HRK--KNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~---~~~--~~~~~~~~s~~~~~gv~~~ 163 (221)
|+|+++....+....| ..+.. .+.|+++|+||+|+.+... ..+.... ... ..++++++||++|.|++++
T Consensus 82 VVDa~dg~~~qt~e~l-~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL 158 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-QHAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL 158 (537)
T ss_dssp ECBSSSCCCHHHHHHH-HHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred EEECCCCccHHHHHHH-HHHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence 9999986544433322 22222 3789999999999865322 1121111 111 1357999999999999999
Q ss_pred HHHHHHHHh
Q 027607 164 FLYLARKLA 172 (221)
Q Consensus 164 ~~~l~~~l~ 172 (221)
+++|...+.
T Consensus 159 le~I~~l~~ 167 (537)
T 3izy_P 159 AEATIALAE 167 (537)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 999998653
No 144
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.85 E-value=6.5e-21 Score=148.67 Aligned_cols=116 Identities=13% Similarity=0.084 Sum_probs=90.2
Q ss_pred CcEEEEEEEecCCccccccccccccccccEEEEEEECC----------ChhhhccHHHHHHHHHhh--cCCCCEEEEEeC
Q 027607 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126 (221)
Q Consensus 59 ~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK 126 (221)
.+++.+++|||+|++.++.+|..|+++++++++|+|++ +..++.....|+..+... ..+.|+++++||
T Consensus 164 ~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK 243 (327)
T 3ohm_A 164 LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK 243 (327)
T ss_dssp ETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEEC
T ss_pred eeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEEC
Confidence 35689999999999999999999999999999999765 445555555666665443 258999999999
Q ss_pred CCcCCcc------------------ccHHHHHH----------HhhcCCeEEEecccCCCChHHHHHHHHHHHhCC
Q 027607 127 VDVKNRQ------------------VKAKQVTF----------HRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174 (221)
Q Consensus 127 ~D~~~~~------------------~~~~~~~~----------~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~~ 174 (221)
+|+.... ..+++..+ ....++.++++||+++.|++.+|..+.+.+.+.
T Consensus 244 ~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 244 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp HHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 9975422 22333344 234567789999999999999999999988764
No 145
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.85 E-value=2.8e-21 Score=160.34 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=87.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCc------------------cCC--cccCCcceeeeeeEEEecCcEEEEEEEecC
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE------------------FEK--KYEPTIGVEVHPLDFFTNCGKIRFYCWDTA 70 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~ 70 (221)
.+..+|+|+|++|||||||+++|+... ... ......|.+.......+...+..+.+||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 356899999999999999999986210 000 000013344444445555567889999999
Q ss_pred CccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc
Q 027607 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (221)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 132 (221)
|+.++...+..+++.+|++++|+|+++....+....|.. +.. .+.|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~~--~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CRL--RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HHT--TTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH--cCCCEEEEEeCCCCccc
Confidence 999999888899999999999999998766666554432 222 37899999999998643
No 146
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.85 E-value=4.4e-21 Score=160.61 Aligned_cols=158 Identities=16% Similarity=0.218 Sum_probs=111.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCc--cCC-----cc------cCCcceeeeeeEEEe-----cCcEEEEEEEecCCcc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGE--FEK-----KY------EPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQE 73 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~--~~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~i~~~D~~g~~ 73 (221)
+-.+|+++|+.++|||||+++|+... ... .+ ....|.+.......+ ++..+.+.+|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 45799999999999999999987521 110 00 011233333222221 3446899999999999
Q ss_pred ccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC---eEE
Q 027607 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY 150 (221)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~ 150 (221)
++...+..+++.+|++++|+|+++....+....|..... .+.|+++|+||+|+..........++....++ .++
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi 161 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAI 161 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCE
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEE
Confidence 998888888999999999999999887777777765543 37899999999999765433223344444455 489
Q ss_pred EecccCCCChHHHHHHHHHHHh
Q 027607 151 EISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 151 ~~s~~~~~gv~~~~~~l~~~l~ 172 (221)
++||++|.|+++++++|.+.+.
T Consensus 162 ~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 162 LASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSC
T ss_pred EEEeecCCCchHHHHHHHHhcc
Confidence 9999999999999999998764
No 147
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.85 E-value=3.7e-21 Score=158.86 Aligned_cols=152 Identities=19% Similarity=0.159 Sum_probs=101.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCcc--C---------------------------CcccCCcceeeeeeEEEecCcE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--E---------------------------KKYEPTIGVEVHPLDFFTNCGK 61 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~ 61 (221)
.+.+||+++|.+|+|||||+++|+.... . .......|.+.......+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 4679999999999999999999875411 0 0111223555555556666677
Q ss_pred EEEEEEecCCccccccccccccccccEEEEEEECCChhhhcc-----HHHHHHHHHhhcCCCCEEEEEeCCCcCCcc--c
Q 027607 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN-----VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--V 134 (221)
Q Consensus 62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~ 134 (221)
..+.+|||||++++...+..++..+|++++|+|+++..++.. ...+...+.......|+++|+||+|+.+.. .
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~ 190 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 190 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence 899999999999998888889999999999999998754322 112222222223346799999999987521 1
Q ss_pred cHH----HHHHHhhc-----CCeEEEecccCCCChHH
Q 027607 135 KAK----QVTFHRKK-----NLQYYEISAKSNYNFEK 162 (221)
Q Consensus 135 ~~~----~~~~~~~~-----~~~~~~~s~~~~~gv~~ 162 (221)
..+ ...+.... .++++++||++|.|+.+
T Consensus 191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 111 11222222 46899999999999975
No 148
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.3e-21 Score=141.40 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=87.6
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCc---ccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccc-
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH- 85 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~- 85 (221)
..+.++|+|+|++|||||||+++|+.+.+... ..++.+ .......+.+|||||...+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 35779999999999999999999887765431 111111 11134578999999999888877777766
Q ss_pred ---ccEEEEEEECC-ChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCcCCccc
Q 027607 86 ---GQCAIIMFDVT-ARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQV 134 (221)
Q Consensus 86 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~ 134 (221)
+|++++|+|++ +..++..+..|+..+.... .+.|+++|+||+|+.+...
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 8889988888877765432 4899999999999876443
No 149
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.84 E-value=1e-20 Score=149.58 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=88.7
Q ss_pred cEEEEEEEecCCccccccccccccccccEEEEEEECC----------ChhhhccHHHHHHHHHhh--cCCCCEEEEEeCC
Q 027607 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (221)
Q Consensus 60 ~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~ 127 (221)
+.+.+.+|||+|++.++.+|..++++++++|+|||++ +..++.....|+..+... ..+.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 677888888888777653 3689999999999
Q ss_pred CcCCccc-----------------------cHHHHHHHhh----------------cCCeEEEecccCCCChHHHHHHHH
Q 027607 128 DVKNRQV-----------------------KAKQVTFHRK----------------KNLQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 128 D~~~~~~-----------------------~~~~~~~~~~----------------~~~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
|+..... ..++..++.. ..+.++++||+++.|++++|.+++
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9743211 1233333221 234568999999999999999999
Q ss_pred HHHhC
Q 027607 169 RKLAG 173 (221)
Q Consensus 169 ~~l~~ 173 (221)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
No 150
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.84 E-value=1.3e-20 Score=153.86 Aligned_cols=158 Identities=19% Similarity=0.157 Sum_probs=101.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc------------
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------------ 79 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~------------ 79 (221)
..++|+++|++|||||||+|++++... ....+..|++.......+...+..+.+|||+|........
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~-~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKER-ALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTT-EEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcc-cccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 458999999999999999999775543 2334455555554433332233478899999975432221
Q ss_pred ccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc--cHHH-----HHHHhhcCCeEEEe
Q 027607 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQ-----VTFHRKKNLQYYEI 152 (221)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~-----~~~~~~~~~~~~~~ 152 (221)
..++..+|++++|+|+++..+.+.. .+...+.. .++|+++|+||+|+.+... ..+. ..+....+.+++++
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFT 334 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEE
Confidence 1246678999999999887655432 22222222 4899999999999865322 1111 12223346789999
Q ss_pred cccCCCChHHHHHHHHHHHhC
Q 027607 153 SAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 153 s~~~~~gv~~~~~~l~~~l~~ 173 (221)
||++|.|++++|..+.+.+..
T Consensus 335 SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 335 SADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999887644
No 151
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.84 E-value=2.9e-20 Score=147.45 Aligned_cols=114 Identities=14% Similarity=0.104 Sum_probs=84.6
Q ss_pred cEEEEEEEecCCccccccccccccccccEEEEEEECCC----------hhhhccHHHHHHHHHhh--cCCCCEEEEEeCC
Q 027607 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (221)
Q Consensus 60 ~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~ 127 (221)
+.+.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.....|+..+... ..+.|+++|+||+
T Consensus 199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence 45789999999999999999999999999999999998 67888888888777653 3689999999999
Q ss_pred CcCCc------------------cccHHHHHHH--------h---hcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607 128 DVKNR------------------QVKAKQVTFH--------R---KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 128 D~~~~------------------~~~~~~~~~~--------~---~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
|+... ....++..++ . ..++.++++||+++.|++++|.++.+.+.+
T Consensus 279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 98531 1122333333 1 345788999999999999999999988754
No 152
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=1.6e-21 Score=160.02 Aligned_cols=156 Identities=19% Similarity=0.139 Sum_probs=102.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCC--------ccccccccccc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG--------QEKFGGLRDGY 82 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g--------~~~~~~~~~~~ 82 (221)
+...+|+++|.+|||||||+|+|+.... .....++|++...........+..+.+||||| ++.+......+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEE-C-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 4567999999999999999999776554 35567888898888888887778999999999 55566666778
Q ss_pred cccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~ 162 (221)
+..+|++++|+|+.+... ....++..+... .+.|+++|+||+|+.... .....+.......++++||.+|.|+.+
T Consensus 100 ~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~-~~~pvilV~NK~D~~~~~--~~~~e~~~lg~~~~~~iSA~~g~gv~~ 174 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVT--AADEEVAKILYR-TKKPVVLAVNKLDNTEMR--ANIYDFYSLGFGEPYPISGTHGLGLGD 174 (456)
T ss_dssp HHHCSEEEEEEESSSCSC--HHHHHHHHHHTT-CCSCEEEEEECC-----------CCSGGGSSSSEEECCTTTCTTHHH
T ss_pred HhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH-cCCCEEEEEECccchhhh--hhHHHHHHcCCCceEEeecccccchHH
Confidence 899999999999876432 233343333222 489999999999986432 111122222223467999999999999
Q ss_pred HHHHHHHHHh
Q 027607 163 PFLYLARKLA 172 (221)
Q Consensus 163 ~~~~l~~~l~ 172 (221)
++..+.+.+.
T Consensus 175 L~~~i~~~l~ 184 (456)
T 4dcu_A 175 LLDAVAEHFK 184 (456)
T ss_dssp HHHHHHTTGG
T ss_pred HHHHHHhhcc
Confidence 9999988664
No 153
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.84 E-value=9.4e-20 Score=147.55 Aligned_cols=161 Identities=15% Similarity=0.088 Sum_probs=98.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCc---cCCcccC--CcceeeeeeEEEe-------------c--C----cEEEEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE---FEKKYEP--TIGVEVHPLDFFT-------------N--C----GKIRFYC 66 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~i~~ 66 (221)
.+.++|+++|+.++|||||+++|+... +...... |....+....... . + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 467999999999999999999976322 2222122 3322222222211 1 1 1378999
Q ss_pred EecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc----cHHHHHHH
Q 027607 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFH 142 (221)
Q Consensus 67 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~ 142 (221)
|||||++.+...+...+..+|++++|+|+++..........+..+. .....|+++|+||+|+.+... ..+...+.
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l 164 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALE-ILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFV 164 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHH-HTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHH-HcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 9999999887776777788999999999996431111112222222 223468999999999865432 12223333
Q ss_pred hh---cCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607 143 RK---KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 143 ~~---~~~~~~~~s~~~~~gv~~~~~~l~~~l~ 172 (221)
.. .+++++++||++|.|+++++++|.+.+.
T Consensus 165 ~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 165 KGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp TTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred hhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 32 3678999999999999999999998654
No 154
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.83 E-value=8.2e-21 Score=146.06 Aligned_cols=158 Identities=16% Similarity=0.208 Sum_probs=88.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccC-Ccc-------cCCcceeeeeeEEEecCcEEEEEEEecCCcccc-------
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKY-------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF------- 75 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~------- 75 (221)
...++|+|+|.+|+|||||+|+++..... ..+ .++.+.+........++..+.+.+|||||....
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 35799999999999999999997654432 222 344444554444444445579999999997322
Q ss_pred cccc-------ccccc-------------cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc
Q 027607 76 GGLR-------DGYYI-------------HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (221)
Q Consensus 76 ~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 135 (221)
..+. ..|+. .+|+++++++.+.......-..++..+.. ++|+++|+||+|+......
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~ 162 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEEC 162 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHH
Confidence 1111 11122 36788888877653222222233444433 7999999999998643222
Q ss_pred H----HHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHH
Q 027607 136 A----KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (221)
Q Consensus 136 ~----~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l 171 (221)
. .........++.++.+|+.++.|+.+++.+|.+.+
T Consensus 163 ~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 163 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 1 22344456788899999999999999998888743
No 155
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.83 E-value=7.2e-20 Score=149.29 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=105.2
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCcc--CC---------------------------cccCCcceeeeeeEEEecC
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EK---------------------------KYEPTIGVEVHPLDFFTNC 59 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~ 59 (221)
...+.++|+++|.+++|||||+++|+.... .. ......|.+.......+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 456779999999999999999999854311 00 0011235555555555666
Q ss_pred cEEEEEEEecCCccccccccccccccccEEEEEEECCChhh---hccHHHHHHHHHh-hcCCCC-EEEEEeCCCcCCccc
Q 027607 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---YKNVPTWHRDLCR-VCENIP-IVLCGNKVDVKNRQV 134 (221)
Q Consensus 60 ~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~-~~~~~p-~ivv~nK~D~~~~~~ 134 (221)
.+..+.+|||||++++...+..++..+|++++|+|+++... |.....+...+.. ...+.| +++|+||+|+.....
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence 66799999999999998888888999999999999998642 2211111111111 112566 899999999854211
Q ss_pred --------cHHHHHHHhhc------CCeEEEecccCCCChHHHHH
Q 027607 135 --------KAKQVTFHRKK------NLQYYEISAKSNYNFEKPFL 165 (221)
Q Consensus 135 --------~~~~~~~~~~~------~~~~~~~s~~~~~gv~~~~~ 165 (221)
..+...+.... .++++++||++|.|+.++.+
T Consensus 173 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 173 SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 11222233333 35799999999999998654
No 156
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.4e-20 Score=157.36 Aligned_cols=154 Identities=19% Similarity=0.165 Sum_probs=103.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCccc-----------------------------CCcceeeeeeEEEecCc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE-----------------------------PTIGVEVHPLDFFTNCG 60 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 60 (221)
..+.++|+++|++|+|||||+++|+.....-... ...|++.......+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 4567999999999999999999988553211000 01344555444455556
Q ss_pred EEEEEEEecCCccccccccccccccccEEEEEEECCChh---hhccHHHHHHH--HHhhcCCCCEEEEEeCCCcCCcc--
Q 027607 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNVPTWHRD--LCRVCENIPIVLCGNKVDVKNRQ-- 133 (221)
Q Consensus 61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~--~~~~~~~~p~ivv~nK~D~~~~~-- 133 (221)
...+.+|||||++.+...+..++..+|++++|+|+++.. ++.....+... +.......|+++|+||+|+.+..
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence 678999999999999888888899999999999999753 22111122222 22222234599999999987521
Q ss_pred c----cHHHHHHHhhc-----CCeEEEecccCCCChHHH
Q 027607 134 V----KAKQVTFHRKK-----NLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 134 ~----~~~~~~~~~~~-----~~~~~~~s~~~~~gv~~~ 163 (221)
. ..+...+.... .++++++||++|.|+.++
T Consensus 324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1 11222222222 468999999999999865
No 157
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.83 E-value=3.6e-20 Score=152.58 Aligned_cols=162 Identities=18% Similarity=0.097 Sum_probs=106.2
Q ss_pred cccCCceEEEEEcCCCCcHHHHHHHHhcCc----cC-CcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccc
Q 027607 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGE----FE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY 82 (221)
Q Consensus 8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~ 82 (221)
...++.++|+++|+.++|||||+++|+... .. .......|.+.......+...+..+.+|||||++.+...+..+
T Consensus 14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHH
T ss_pred hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHH
Confidence 344678999999999999999999987654 11 0111122222222111111134789999999999888777888
Q ss_pred cccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc----HHHHHHHhhc----CCeEEEecc
Q 027607 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRKK----NLQYYEISA 154 (221)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~----~~~~~~~s~ 154 (221)
+..+|++++|+|+++...-+. ..++..+.. .+.|.++|+||+|+.+.... .+...+.... ..+++++||
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA 170 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQT-GEHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA 170 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHH-HHHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred HhhCCEEEEEEecCCCccHHH-HHHHHHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEEC
Confidence 899999999999987421111 112222222 37888999999999753221 1222333333 578999999
Q ss_pred cCCCChHHHHHHHHHHHh
Q 027607 155 KSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 155 ~~~~gv~~~~~~l~~~l~ 172 (221)
++|.|+.+++++|.+.+.
T Consensus 171 ~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 171 KTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhhc
Confidence 999999999999999764
No 158
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.83 E-value=1.8e-21 Score=158.73 Aligned_cols=153 Identities=19% Similarity=0.215 Sum_probs=100.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcC--ccCCcc---------------------------cCCcceeeeeeEEEecCcE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKY---------------------------EPTIGVEVHPLDFFTNCGK 61 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 61 (221)
.+.++|+++|+.|+|||||+++|+.. .+.... ....|.+.......+....
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46799999999999999999998764 221110 0022334433333455566
Q ss_pred EEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHH------hhcCCCCEEEEEeCCCcCCcc--
Q 027607 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC------RVCENIPIVLCGNKVDVKNRQ-- 133 (221)
Q Consensus 62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~------~~~~~~p~ivv~nK~D~~~~~-- 133 (221)
..+.+|||||++++...+..++..+|++++|+|+++ .+|+....|..... ......|+++++||+|+.+..
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 789999999999998888888999999999999998 55654332221111 111234689999999997621
Q ss_pred ------ccHHHHHHHhhcC-----CeEEEecccCCCChHHHH
Q 027607 134 ------VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 134 ------~~~~~~~~~~~~~-----~~~~~~s~~~~~gv~~~~ 164 (221)
...+...+....+ ++++++|+++|.|+.+++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 1222334444444 679999999999997654
No 159
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.83 E-value=5.5e-20 Score=146.23 Aligned_cols=157 Identities=17% Similarity=0.091 Sum_probs=101.9
Q ss_pred eE-EEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeee--eEEEecCcEEEEEEEecCCccc---------ccccccc
Q 027607 14 FK-LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEK---------FGGLRDG 81 (221)
Q Consensus 14 ~~-i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~D~~g~~~---------~~~~~~~ 81 (221)
++ |+++|++|||||||+|+|...... .....+.+... ..+.+++ ..+.+|||+|.-. +... ..
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~--~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~ 253 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQK--VDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LS 253 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HH
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCcc--ccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HH
Confidence 45 999999999999999998766542 22233334333 3444444 5789999999622 1111 22
Q ss_pred ccccccEEEEEEECCChh--hhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCccccH---HHHHHHhhc---CCeEEEe
Q 027607 82 YYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKK---NLQYYEI 152 (221)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~---~~~~~~~ 152 (221)
.+..+|++++|+|++++. .......|...+.... .+.|+++|+||+|+....... ....+.... ...++++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 333 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPI 333 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 467899999999999876 4555555555554432 578999999999986533211 111122332 3468999
Q ss_pred cccCCCChHHHHHHHHHHHhCCC
Q 027607 153 SAKSNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 153 s~~~~~gv~~~~~~l~~~l~~~~ 175 (221)
|+++|.|+++++++|.+.+....
T Consensus 334 SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 334 SALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHC
T ss_pred ECCCCcCHHHHHHHHHHHhcccC
Confidence 99999999999999998765533
No 160
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.83 E-value=2.1e-19 Score=145.58 Aligned_cols=163 Identities=15% Similarity=0.086 Sum_probs=106.5
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcC---ccCCcccC--CcceeeeeeEEEe-------------c--C----cEEEE
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG---EFEKKYEP--TIGVEVHPLDFFT-------------N--C----GKIRF 64 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~i 64 (221)
...+.++|+++|+.++|||||+++|+.. .+...... |....+....... . + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 3456799999999999999999997732 22222222 3322222222211 0 1 13789
Q ss_pred EEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc----HHHHH
Q 027607 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVT 140 (221)
Q Consensus 65 ~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~ 140 (221)
.+|||||++.+...+...+..+|++++|+|+++..........+..+.. ....|+++|+||+|+.+.... .+...
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-~~~~~iivviNK~Dl~~~~~~~~~~~~i~~ 164 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI-IGQKNIIIAQNKIELVDKEKALENYRQIKE 164 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCCCcEEEEEECccCCCHHHHHHHHHHHHH
Confidence 9999999988877666777889999999999965311111122222222 234689999999999764321 12223
Q ss_pred HHhh---cCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607 141 FHRK---KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 141 ~~~~---~~~~~~~~s~~~~~gv~~~~~~l~~~l~ 172 (221)
+... ..++++++|+++|.|+++++++|.+.+.
T Consensus 165 ~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 165 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 3332 4678999999999999999999998654
No 161
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.83 E-value=1.1e-20 Score=147.83 Aligned_cols=118 Identities=13% Similarity=0.160 Sum_probs=91.5
Q ss_pred EecCcEEEEEEEecCCccccccccccccccccEEEEEEECC----------ChhhhccHHHHHHHHHhh--cCCCCEEEE
Q 027607 56 FTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLC 123 (221)
Q Consensus 56 ~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~ivv 123 (221)
.+..+.+.+++|||+|++.++.+|..|+++++++|+|+|++ +..++.....|+..+... ..+.|++++
T Consensus 155 ~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv 234 (340)
T 4fid_A 155 DFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIF 234 (340)
T ss_dssp EEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEE
T ss_pred EEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEE
Confidence 33445688999999999999999999999999999999998 566777777777776543 268999999
Q ss_pred EeCCCcCCccc-----------------cHHHHHHHhh---------------------------cCCeEEEecccCCCC
Q 027607 124 GNKVDVKNRQV-----------------KAKQVTFHRK---------------------------KNLQYYEISAKSNYN 159 (221)
Q Consensus 124 ~nK~D~~~~~~-----------------~~~~~~~~~~---------------------------~~~~~~~~s~~~~~g 159 (221)
+||+|+..+.. .+++..++.. ..+.++++||+++.+
T Consensus 235 ~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~n 314 (340)
T 4fid_A 235 LNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSN 314 (340)
T ss_dssp EECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHH
T ss_pred EECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHH
Confidence 99999753211 1222222211 246789999999999
Q ss_pred hHHHHHHHHHHHhC
Q 027607 160 FEKPFLYLARKLAG 173 (221)
Q Consensus 160 v~~~~~~l~~~l~~ 173 (221)
++.+|..+.+.+.+
T Consensus 315 v~~vF~~v~~~Il~ 328 (340)
T 4fid_A 315 IKRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998876
No 162
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.82 E-value=3.1e-20 Score=149.80 Aligned_cols=158 Identities=13% Similarity=0.037 Sum_probs=109.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCc-------cCC-------cccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGE-------FEK-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~ 77 (221)
+.++|+++|+.++|||||+++|+... +.. ......|.+.......+......+.+|||||++++..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 56999999999999999999987631 100 0011334555544455555667899999999998877
Q ss_pred ccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCccc-----cHHHHHHHhhcC-----
Q 027607 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKKN----- 146 (221)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-----~~~~~~~~~~~~----- 146 (221)
.+..++..+|++++|+|+++....+... ++..+.. .+.| +++++||+|+.+... ..+...+....+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 158 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTRE-HLLLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE 158 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHH-HHHHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 7778889999999999999864333322 2233322 3678 689999999874211 122333444444
Q ss_pred CeEEEecccCCCC----------hHHHHHHHHHHHh
Q 027607 147 LQYYEISAKSNYN----------FEKPFLYLARKLA 172 (221)
Q Consensus 147 ~~~~~~s~~~~~g----------v~~~~~~l~~~l~ 172 (221)
++++++||++|.| +.++++.|.+.+.
T Consensus 159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 6899999999764 7888888877553
No 163
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.82 E-value=2.4e-20 Score=150.97 Aligned_cols=159 Identities=15% Similarity=0.086 Sum_probs=110.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcC--------ccCCc-------ccCCcceeeeeeEEEecCcEEEEEEEecCCccc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--------EFEKK-------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~ 74 (221)
..+.++|+++|++|+|||||+++|+.. .+... .....|.+.......+......+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 456799999999999999999998762 11110 011344555555555666667899999999999
Q ss_pred cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCccc-----cHHHHHHHhhcC--
Q 027607 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKKN-- 146 (221)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-----~~~~~~~~~~~~-- 146 (221)
+...+..++..+|++++|+|+++....+ ...++..+... +.| +++|+||+|+.+... ..+...+....+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 164 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence 8877788889999999999998865332 34444444332 678 889999999974211 112233444433
Q ss_pred ---CeEEEecccCCCC------------------hHHHHHHHHHHH
Q 027607 147 ---LQYYEISAKSNYN------------------FEKPFLYLARKL 171 (221)
Q Consensus 147 ---~~~~~~s~~~~~g------------------v~~~~~~l~~~l 171 (221)
++++++||++|.| +.++++.|.+.+
T Consensus 165 ~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 165 GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 6899999999977 667777666644
No 164
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=150.00 Aligned_cols=165 Identities=16% Similarity=0.265 Sum_probs=89.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCcc-CCccc--------CCcceeeeeeEEEecCcEEEEEEEecCCc-------cc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYE--------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-------EK 74 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~D~~g~-------~~ 74 (221)
...++|+|+|++|+|||||+++|+.... ...+. ++.+...........+....+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 4568999999999999999999665432 22111 23333332223333444568999999998 55
Q ss_pred cccccc-------cccccccE-----------EEEEEECCC-hhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCccc
Q 027607 75 FGGLRD-------GYYIHGQC-----------AIIMFDVTA-RLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (221)
Q Consensus 75 ~~~~~~-------~~~~~~d~-----------~i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 134 (221)
+..++. .|+..+++ .++||++++ ..++..+. .|+..+ ..+.|+++|+||+|+.....
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~e 191 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKE 191 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHH
Confidence 555554 44444332 235555544 44555554 333333 35799999999999875332
Q ss_pred c----HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHHhCCCCCcc
Q 027607 135 K----AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHF 179 (221)
Q Consensus 135 ~----~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~ 179 (221)
. .+...++...+++++++|+++|.+ .+.|.++.+.+....+...
T Consensus 192 v~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~~v 239 (361)
T 2qag_A 192 RERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPFSV 239 (361)
T ss_dssp HHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSCEE
T ss_pred HHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCCCE
Confidence 2 234456666788999999999999 8888888888876655443
No 165
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.82 E-value=2.2e-19 Score=150.71 Aligned_cols=156 Identities=21% Similarity=0.195 Sum_probs=104.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCc----ccCCcceeeeeeEE------------EecCcEEEEEEEecCCccc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDF------------FTNCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~i~~~D~~g~~~ 74 (221)
.+.++|+++|++|+|||||+++|+....... ...+.+........ .+......+.+|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 3568999999999999999999876543221 11233322211100 0001122589999999999
Q ss_pred cccccccccccccEEEEEEECCC---hhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc--------------H-
Q 027607 75 FGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--------------A- 136 (221)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--------------~- 136 (221)
+...+..+++.+|++++|+|+++ +.++..+. .+.. .+.|+++++||+|+...... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH--cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 99999999999999999999998 44444332 2222 37899999999998642110 0
Q ss_pred ----------HHHHHHhh---------------cCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607 137 ----------KQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 137 ----------~~~~~~~~---------------~~~~~~~~s~~~~~gv~~~~~~l~~~l~ 172 (221)
+....... ..++++++||++|.|+++++.+|...+.
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 00011111 1247999999999999999999998654
No 166
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.82 E-value=1e-19 Score=145.45 Aligned_cols=113 Identities=15% Similarity=0.120 Sum_probs=91.3
Q ss_pred EEEEEEEecCCccccccccccccccccEEEEEEECCC----------hhhhccHHHHHHHHHhh--cCCCCEEEEEeCCC
Q 027607 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD 128 (221)
Q Consensus 61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D 128 (221)
.+.+.+|||+|++.++.+|..++++++++|+|||+++ ..+|.....|+..+... ..+.|+++|+||+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 4789999999999999999999999999999999999 88898888898888664 36899999999999
Q ss_pred cCCccc--------------------------------cHHHHHHH-----hh--------cCCeEEEecccCCCChHHH
Q 027607 129 VKNRQV--------------------------------KAKQVTFH-----RK--------KNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 129 ~~~~~~--------------------------------~~~~~~~~-----~~--------~~~~~~~~s~~~~~gv~~~ 163 (221)
+..... ..++..++ .. ..+.++++||+++.|++.+
T Consensus 296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v 375 (402)
T 1azs_C 296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 375 (402)
T ss_dssp HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence 743211 12222331 11 3566789999999999999
Q ss_pred HHHHHHHHhC
Q 027607 164 FLYLARKLAG 173 (221)
Q Consensus 164 ~~~l~~~l~~ 173 (221)
|.++.+.+.+
T Consensus 376 F~~v~~~I~~ 385 (402)
T 1azs_C 376 FNDCRDIIQR 385 (402)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.81 E-value=1.1e-20 Score=155.07 Aligned_cols=153 Identities=14% Similarity=0.178 Sum_probs=105.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (221)
+..+|+++|+.++|||||+++|+.+.+..... .|.+.......+...+..+.+|||||++.+...+...+..+|++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~--~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEA--GGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTB--CCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccC--CCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 56899999999999999999988654432221 1222221112233334578999999999999999999999999999
Q ss_pred EEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc---cHHHH---HHHhhc--CCeEEEecccCCCChHHH
Q 027607 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQV---TFHRKK--NLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~---~~~~~~--~~~~~~~s~~~~~gv~~~ 163 (221)
|+|+++....+....| ..... .+.|+++++||+|+.+... ..+.. .+...+ .++++++||++|.|+.++
T Consensus 81 VVda~~g~~~qT~e~l-~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL 157 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAI-QHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDEL 157 (501)
T ss_dssp EEETTTBSCTTTHHHH-HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTH
T ss_pred EeecccCccHHHHHHH-HHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchh
Confidence 9999885433333222 22222 3789999999999864221 11100 011122 368999999999999999
Q ss_pred HHHHHH
Q 027607 164 FLYLAR 169 (221)
Q Consensus 164 ~~~l~~ 169 (221)
+++|..
T Consensus 158 le~I~~ 163 (501)
T 1zo1_I 158 LDAILL 163 (501)
T ss_dssp HHHTTT
T ss_pred hhhhhh
Confidence 998764
No 168
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.81 E-value=1.7e-19 Score=147.17 Aligned_cols=151 Identities=19% Similarity=0.191 Sum_probs=101.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCcc--CCc----------ccCC-------------------cceeeeeeEEEecC
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--EKK----------YEPT-------------------IGVEVHPLDFFTNC 59 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~--~~~----------~~~~-------------------~~~~~~~~~~~~~~ 59 (221)
.+.++|+++|+.++|||||+++|+.+.. ... ...+ .|.+.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4569999999999999999999875431 000 0011 12233322333444
Q ss_pred cEEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc------
Q 027607 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ------ 133 (221)
Q Consensus 60 ~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------ 133 (221)
....+.+|||||++.+...+..++..+|++++|+|+++....+ ...++..+.. ....|+++|+||+|+.+..
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~-~~~~~iIvviNK~Dl~~~~~~~~~~ 179 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASL-LGIKHIVVAINKMDLNGFDERVFES 179 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHH-TTCCEEEEEEECTTTTTSCHHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH-cCCCeEEEEEEcCcCCcccHHHHHH
Confidence 5678999999999998877778899999999999999864322 2333333322 2234699999999997521
Q ss_pred ccHHHHHHHhhcC-----CeEEEecccCCCChHHH
Q 027607 134 VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (221)
Q Consensus 134 ~~~~~~~~~~~~~-----~~~~~~s~~~~~gv~~~ 163 (221)
...+...+....+ ++++++||++|.|+.++
T Consensus 180 i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 180 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 1122334445555 67999999999999874
No 169
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.81 E-value=1.8e-19 Score=133.15 Aligned_cols=159 Identities=13% Similarity=-0.003 Sum_probs=96.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc----------cccc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------GGLR 79 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~----------~~~~ 79 (221)
..+..+|+++|++|||||||++++++..+...+.++.|.+.......+.+ .+.+|||||.... ....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 34668999999999999999999776554455566777666544444433 4789999997421 1112
Q ss_pred cccc---ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc----cHHHHHHHhhc--CCeEE
Q 027607 80 DGYY---IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKK--NLQYY 150 (221)
Q Consensus 80 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~~~~--~~~~~ 150 (221)
..++ ..++++++++|+++..+.... .....+.. .+.|+++|+||+|+..... ......+.... .+.++
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVE 176 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceE
Confidence 2233 468999999999886544221 11111221 3789999999999865321 12223333333 35789
Q ss_pred EecccCCCChHHHHHHHHHHHhCC
Q 027607 151 EISAKSNYNFEKPFLYLARKLAGD 174 (221)
Q Consensus 151 ~~s~~~~~gv~~~~~~l~~~l~~~ 174 (221)
++|++++.|+++++++|.+.+...
T Consensus 177 ~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 177 TFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHC--
T ss_pred EEeecCCCCHHHHHHHHHHHHhhc
Confidence 999999999999999998876443
No 170
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.81 E-value=1.5e-19 Score=144.18 Aligned_cols=143 Identities=7% Similarity=-0.040 Sum_probs=103.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (221)
+|+++|++++|||||+++|+ ..+.+.......+......+.+|||||++++.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999976 22333333334455556679999999999887766777899999999999
Q ss_pred CCChhhhccHHHHHHHHHhhcCCCCE-EEEEe-CCCcCCccccH----HHHHHHhhc---CCeEEE--ecccC---CCCh
Q 027607 95 VTARLTYKNVPTWHRDLCRVCENIPI-VLCGN-KVDVKNRQVKA----KQVTFHRKK---NLQYYE--ISAKS---NYNF 160 (221)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~n-K~D~~~~~~~~----~~~~~~~~~---~~~~~~--~s~~~---~~gv 160 (221)
+. ..+.....++..+... +.|. ++++| |+|+ +..... +...+.... .+++++ +||++ |.|+
T Consensus 93 -~~-g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTH
T ss_pred -CC-CCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCH
Confidence 43 3344444555444332 6777 88899 9999 533211 222333332 368999 99999 9999
Q ss_pred HHHHHHHHHHHh
Q 027607 161 EKPFLYLARKLA 172 (221)
Q Consensus 161 ~~~~~~l~~~l~ 172 (221)
+++++.|.+.+.
T Consensus 168 ~~L~~~l~~~~~ 179 (370)
T 2elf_A 168 DELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc
Confidence 999999988653
No 171
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.80 E-value=5.2e-20 Score=151.22 Aligned_cols=155 Identities=18% Similarity=0.208 Sum_probs=90.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhc--CccCCc---------------------c------cCCcceeeeeeEEEecCc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK---------------------Y------EPTIGVEVHPLDFFTNCG 60 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~--~~~~~~---------------------~------~~~~~~~~~~~~~~~~~~ 60 (221)
..+.++|+++|+.++|||||+++|+. +.+... . ....|.|.......+...
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 35678999999999999999999864 222100 0 001223322222233334
Q ss_pred EEEEEEEecCCccccccccccccccccEEEEEEECCCh---hhhccHHHHHHHHHh-hcCCCC-EEEEEeCCCcCCcc--
Q 027607 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCR-VCENIP-IVLCGNKVDVKNRQ-- 133 (221)
Q Consensus 61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~-~~~~~p-~ivv~nK~D~~~~~-- 133 (221)
...+.+|||||++++...+..++..+|++++|+|+++. .+|+....+...+.. ...+.| +++|+||+|+....
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 57899999999999988888889999999999999987 345433333332221 123676 99999999995421
Q ss_pred ------ccHHHHHHHhhc-------CCeEEEecccCCCChHHHH
Q 027607 134 ------VKAKQVTFHRKK-------NLQYYEISAKSNYNFEKPF 164 (221)
Q Consensus 134 ------~~~~~~~~~~~~-------~~~~~~~s~~~~~gv~~~~ 164 (221)
...+...+.... .++++++|+++|.|+.+++
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 111233333333 4679999999999998755
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.80 E-value=1.1e-19 Score=141.44 Aligned_cols=159 Identities=12% Similarity=0.142 Sum_probs=100.8
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcc----cCCcc----------------------eeee------------
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIG----------------------VEVH------------ 51 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~----~~~~~----------------------~~~~------------ 51 (221)
....++|+|+|.+|||||||+|+|++..+.+.. ...++ ++..
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 345689999999999999999998877653211 11121 1110
Q ss_pred -----------eeEEEe-cCcEEEEEEEecCCccc-------------cccccccccccccEEE-EEEECCChhhhccHH
Q 027607 52 -----------PLDFFT-NCGKIRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAI-IMFDVTARLTYKNVP 105 (221)
Q Consensus 52 -----------~~~~~~-~~~~~~i~~~D~~g~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 105 (221)
...+.+ ......+.+|||||... +..+...++..++.++ +|+|+++..+.....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 000000 01135799999999642 3334556777888766 799998765554433
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCcCCccc-cHHHHHH---HhhcC-CeEEEecccCCCChHHHHHHHHHH
Q 027607 106 TWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTF---HRKKN-LQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 106 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~---~~~~~-~~~~~~s~~~~~gv~~~~~~l~~~ 170 (221)
.+...+.. .+.|+++|+||+|+.+... ..+.... ....+ .+++++||++|.|+++++++|.+.
T Consensus 183 ~~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 183 KIAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 44444432 3789999999999865432 2222111 01112 357889999999999999998873
No 173
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.79 E-value=1.4e-19 Score=148.26 Aligned_cols=151 Identities=15% Similarity=0.171 Sum_probs=100.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcC--ccCCc---------------------------ccCCcceeeeeeEEEecCcE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK---------------------------YEPTIGVEVHPLDFFTNCGK 61 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 61 (221)
.+.++|+++|.+++|||||+++|+.. .+... .....|.+.......+....
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 46799999999999999999998753 11100 00012334333333445566
Q ss_pred EEEEEEecCCccccccccccccccccEEEEEEECCChh---hhc---cHHHHHHHHHhhcCCCC-EEEEEeCCCcCCc--
Q 027607 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKNR-- 132 (221)
Q Consensus 62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~-- 132 (221)
..+.+|||||++.+...+..++..+|++++|+|+++.. +|+ .....+..... .+.| +++|+||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~~~~~ 162 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSVKWDE 162 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccccCCH
Confidence 78999999999998888888899999999999999763 343 12222222221 2555 8999999998731
Q ss_pred c----ccHHHHHHHhhcC-----CeEEEecccCCCChHHH
Q 027607 133 Q----VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (221)
Q Consensus 133 ~----~~~~~~~~~~~~~-----~~~~~~s~~~~~gv~~~ 163 (221)
. ...+...+....+ ++++++||++|.|+.++
T Consensus 163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 1 1112223333333 68999999999998643
No 174
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.79 E-value=8.6e-20 Score=153.54 Aligned_cols=151 Identities=22% Similarity=0.207 Sum_probs=81.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCcc--CC---------------------------cccCCcceeeeeeEEEecCc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EK---------------------------KYEPTIGVEVHPLDFFTNCG 60 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (221)
..+.++|+++|++|+|||||+++|+.... .. ......|+|.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 45678999999999999999999864210 00 00113345555555555556
Q ss_pred EEEEEEEecCCccccccccccccccccEEEEEEECCChh---hh--ccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCc--
Q 027607 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY--KNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR-- 132 (221)
Q Consensus 61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~-- 132 (221)
+..+.+|||||++.+...+..++..+|++|+|+|+++.. ++ .........+... .+.| +++|+||+|+.+.
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgip~iIvviNKiDl~~~~~ 332 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGISEIVVSVNKLDLMSWSE 332 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSCCCEEEEEECGGGGTTCH
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCCeEEEEEeccccccccH
Confidence 678999999999999888888899999999999998753 22 1111122122222 2555 9999999998652
Q ss_pred cc----cHHHHHHH-hhcC-----CeEEEecccCCCChH
Q 027607 133 QV----KAKQVTFH-RKKN-----LQYYEISAKSNYNFE 161 (221)
Q Consensus 133 ~~----~~~~~~~~-~~~~-----~~~~~~s~~~~~gv~ 161 (221)
.. ..+...+. ...+ ++++++||++|.|+.
T Consensus 333 ~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 333 DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 11 11222333 3333 379999999999997
No 175
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.79 E-value=4.6e-19 Score=155.65 Aligned_cols=159 Identities=14% Similarity=0.063 Sum_probs=108.6
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCc-------cCC-------cccCCcceeeeeeEEEecCcEEEEEEEecCCcccc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE-------FEK-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~ 75 (221)
..+.++|+++|+.++|||||+++|+... +.. ....+.|.+.......+......+.+|||||++++
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 4567999999999999999999987631 000 11234555555544555666678999999999998
Q ss_pred ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCccc-----cHHHHHHHhhcC---
Q 027607 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKKN--- 146 (221)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-----~~~~~~~~~~~~--- 146 (221)
...+..++..+|++++|+|+++....+ ...++..+... ++| +++|+||+|+.+... ..+...+....+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~ 449 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG 449 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc
Confidence 877788899999999999999875433 33444444333 678 789999999975221 122333444443
Q ss_pred --CeEEEecccCC--------CChHHHHHHHHHHH
Q 027607 147 --LQYYEISAKSN--------YNFEKPFLYLARKL 171 (221)
Q Consensus 147 --~~~~~~s~~~~--------~gv~~~~~~l~~~l 171 (221)
++++++|+++| .|+.++++.|.+.+
T Consensus 450 ~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred cceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 68999999999 46888888887754
No 176
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.78 E-value=1e-18 Score=149.55 Aligned_cols=127 Identities=20% Similarity=0.178 Sum_probs=87.8
Q ss_pred CCCCCCCcccCCceEEEEEcCCCCcHHHHHHHHhcC--ccCC--ccc------------CCcceeeeeeEEEecCcEEEE
Q 027607 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEK--KYE------------PTIGVEVHPLDFFTNCGKIRF 64 (221)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~G~~gsGKStL~~~l~~~--~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~i 64 (221)
|++..... ..+..+|+|+|++|+|||||+++|+.. .... ... ...+.+.......+......+
T Consensus 1 M~~~l~~~-~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i 79 (691)
T 1dar_A 1 MAVKVEYD-LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRI 79 (691)
T ss_dssp CCTTCCCC-GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEE
T ss_pred CCccccCc-cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEE
Confidence 55554333 346799999999999999999998842 1100 000 022333333333444456789
Q ss_pred EEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 65 ~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 131 (221)
.+|||||+..+...+..+++.+|++++|+|+++....+....|... .. .+.|+++|+||+|+..
T Consensus 80 ~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~-~~--~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 80 NIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA-EK--YKVPRIAFANKMDKTG 143 (691)
T ss_dssp EEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HH--TTCCEEEEEECTTSTT
T ss_pred EEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHH-HH--cCCCEEEEEECCCccc
Confidence 9999999998888888899999999999999988777766655542 22 3899999999999864
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.77 E-value=2.2e-18 Score=146.97 Aligned_cols=117 Identities=19% Similarity=0.124 Sum_probs=84.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccC----------------CcceeeeeeEEEecCcEEEEEEEecCCccc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP----------------TIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~ 74 (221)
.+-.+|+|+|++|+|||||+++|+.......... ..+.++......+....+.+.+|||||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 3567999999999999999999874322100000 123344444455555678899999999999
Q ss_pred cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcC
Q 027607 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (221)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 130 (221)
+...+..+++.+|++++|+|+++....+.. .++..+.. .+.|+++|+||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH--TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH--ccCCEEEEecCCchh
Confidence 888888889999999999998876443332 33333333 379999999999986
No 178
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.77 E-value=4.8e-18 Score=136.84 Aligned_cols=159 Identities=16% Similarity=0.142 Sum_probs=107.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc-EEEEEEEecCCccc----cccccccc---cccc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEK----FGGLRDGY---YIHG 86 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~D~~g~~~----~~~~~~~~---~~~~ 86 (221)
.|+++|++|||||||+++++.... .......++.......+... ...+.+||+||... ...+...+ +..+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~--~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCC--EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCc--cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 589999999999999999765432 11222222222222222222 25789999999743 22222223 3468
Q ss_pred cEEEEEEECCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHH
Q 027607 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (221)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~ 163 (221)
+.++.++|++ ..++..+..|...+.... ...|.++|+||+|.................++.++.+||+++.|++++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL 315 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPAL 315 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHH
Confidence 9999999998 555666666666655432 368999999999987652222333444556789999999999999999
Q ss_pred HHHHHHHHhCCCC
Q 027607 164 FLYLARKLAGDPN 176 (221)
Q Consensus 164 ~~~l~~~l~~~~~ 176 (221)
+.+|.+.+...+.
T Consensus 316 ~~~i~~~l~~~~~ 328 (416)
T 1udx_A 316 KEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHhccc
Confidence 9999999877654
No 179
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.77 E-value=5.6e-19 Score=146.70 Aligned_cols=166 Identities=14% Similarity=0.077 Sum_probs=104.7
Q ss_pred CCCCCCCcccCCceEEEEEcCCCCcHHHHHHHHhcCcc-C-------------C------cccCCcceeeeeeEEEecCc
Q 027607 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEF-E-------------K------KYEPTIGVEVHPLDFFTNCG 60 (221)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~-~-------------~------~~~~~~~~~~~~~~~~~~~~ 60 (221)
|-|.+-.....+.++|+|+|++|+|||||+++|+.... . . ......|.+.......+...
T Consensus 1 m~m~~l~~~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~ 80 (529)
T 2h5e_A 1 MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH 80 (529)
T ss_dssp --CCTHHHHHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET
T ss_pred CchhhhhhhhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC
Confidence 33443333345679999999999999999999885311 0 0 01123344444444455556
Q ss_pred EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHH
Q 027607 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT 140 (221)
Q Consensus 61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 140 (221)
+..+.+|||||+..+...+..+++.+|++++|+|+++....+. ..++..... .+.|+++|+||+|+...........
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~--~~ipiivviNK~Dl~~~~~~~~~~~ 157 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL--RDTPILTFMNKLDRDIRDPMELLDE 157 (529)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT--TTCCEEEEEECTTSCCSCHHHHHHH
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH--cCCCEEEEEcCcCCccccHHHHHHH
Confidence 6889999999999988888888999999999999988642221 222222222 3789999999999976543222223
Q ss_pred HHhhcCCe-----EEEecccCCCChHHHHHHHHH
Q 027607 141 FHRKKNLQ-----YYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 141 ~~~~~~~~-----~~~~s~~~~~gv~~~~~~l~~ 169 (221)
+....+.. +...|+.++.|+.+++...+.
T Consensus 158 i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~ 191 (529)
T 2h5e_A 158 VENELKIGCAPITWPIGCGKLFKGVYHLYKDETY 191 (529)
T ss_dssp HHHHHCCEEEESEEEESCGGGCCEEEETTTTEEE
T ss_pred HHHHhCCCccceecceecccCcceeeehhhhhHh
Confidence 33444433 233678888888877655443
No 180
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.76 E-value=3.9e-18 Score=130.23 Aligned_cols=118 Identities=13% Similarity=0.150 Sum_probs=84.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccc------
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI------ 84 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~------ 84 (221)
.+.++|+++|.+|+|||||+|+|+.+... ......+.+.......+...+..+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVV-RVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCS-CCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCc-ccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 47899999999999999999998876542 22334444444444444445678999999999877665555443
Q ss_pred ---cccEEEEEEECCChhhhccH-HHHHHHHHhhcC---CCCEEEEEeCCCcC
Q 027607 85 ---HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVK 130 (221)
Q Consensus 85 ---~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~---~~p~ivv~nK~D~~ 130 (221)
.+|++++|++++... +... ..|+..+..... ..|+++|+||+|+.
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 789999999987654 4433 356666655432 35999999999985
No 181
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.76 E-value=8.7e-19 Score=136.22 Aligned_cols=167 Identities=17% Similarity=0.235 Sum_probs=87.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcC-ccCCcccC------CcceeeeeeEEEe--cCcEEEEEEEecCCc-------cc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTG-EFEKKYEP------TIGVEVHPLDFFT--NCGKIRFYCWDTAGQ-------EK 74 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~-~~~~~~~~------~~~~~~~~~~~~~--~~~~~~i~~~D~~g~-------~~ 74 (221)
.-.++|+|+|++|||||||+++++.. .+.....+ +.+.......+.+ .+....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 35699999999999999999996653 33222100 0111111122222 233468999999997 44
Q ss_pred cccccc-------ccccc-------------ccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc
Q 027607 75 FGGLRD-------GYYIH-------------GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (221)
Q Consensus 75 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 134 (221)
+..+.. .++.. +++++++.+.+. .+++.... ..+.......++++|+||.|+.....
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAIHNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHHTTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHHHhcCCEEEEEEeCCCCCHHH
Confidence 444333 33322 233444444322 23444331 22333334679999999999865322
Q ss_pred ----cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHHhCCCCCcccc
Q 027607 135 ----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE 181 (221)
Q Consensus 135 ----~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ 181 (221)
..+...++...++.++++|+++| |++++|..+++.+....++..+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~avig 222 (301)
T 2qnr_A 173 RERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIPFSVVG 222 (301)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCSEECCC
T ss_pred HHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCCceEEC
Confidence 23445677778899999999999 99999999999998766555433
No 182
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.75 E-value=3.8e-19 Score=142.91 Aligned_cols=83 Identities=19% Similarity=0.132 Sum_probs=46.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEE-----------------------ecC-cEEEEEEEec
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFF-----------------------TNC-GKIRFYCWDT 69 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~-~~~~i~~~D~ 69 (221)
++|+++|.+|||||||+|+|+... ....+.+++|....... +.+ ..+.+.+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 589999999999999999987665 22223333333222211 121 2468999999
Q ss_pred CCccc----cccccc---cccccccEEEEEEECCCh
Q 027607 70 AGQEK----FGGLRD---GYYIHGQCAIIMFDVTAR 98 (221)
Q Consensus 70 ~g~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 98 (221)
||... ...+.. .+++.+|++++|+|+++.
T Consensus 79 pG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C---------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 99753 222222 457899999999999875
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.74 E-value=7.5e-18 Score=129.25 Aligned_cols=119 Identities=13% Similarity=0.136 Sum_probs=84.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccc---------
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG--------- 81 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~--------- 81 (221)
.+.++|+++|.+|+|||||+|+|+.+.+. ......+++.......+...+..+.+|||||...+......
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVV-SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCS-CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcc-cccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 46799999999999999999998866542 23445555655555555556778999999998765543321
Q ss_pred ccccccEEEEEEECCChhhhccH-HHHHHHHHhhcCC---CCEEEEEeCCCcCC
Q 027607 82 YYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCEN---IPIVLCGNKVDVKN 131 (221)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~---~p~ivv~nK~D~~~ 131 (221)
....+|++++|+|++.. ++... ..|+..+...... .|+++|+||+|+..
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 13468999999998653 34433 3566666554322 69999999999864
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.73 E-value=2.8e-17 Score=140.74 Aligned_cols=109 Identities=13% Similarity=0.103 Sum_probs=76.3
Q ss_pred EEEEEecCCccc---cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc---cc-
Q 027607 63 RFYCWDTAGQEK---FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VK- 135 (221)
Q Consensus 63 ~i~~~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~- 135 (221)
.+.+|||||... .......++..+|++++|+|+++..+......|...+.. .+.|+++|+||+|+.... ..
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee 252 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG--RGLTVFFLVNAWDQVRESLIDPDD 252 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT--SCCCEEEEEECGGGGGGGCSSTTC
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh--hCCCEEEEEECcccccccccChhh
Confidence 589999999654 234456678899999999999988776665555444432 267899999999986432 00
Q ss_pred ----H----HHH-----HHHhh--------cCCeEEEeccc--------------CCCChHHHHHHHHHHHhC
Q 027607 136 ----A----KQV-----TFHRK--------KNLQYYEISAK--------------SNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 136 ----~----~~~-----~~~~~--------~~~~~~~~s~~--------------~~~gv~~~~~~l~~~l~~ 173 (221)
. ... ..... ....++++|++ ++.|+.+++..|.+.+..
T Consensus 253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 0 010 01111 22468999999 999999999999887654
No 185
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.73 E-value=2.6e-17 Score=140.88 Aligned_cols=119 Identities=18% Similarity=0.177 Sum_probs=84.4
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhc--CccCCc--------ccC------CcceeeeeeEEEecCcEEEEEEEecCCcc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK--------YEP------TIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~--~~~~~~--------~~~------~~~~~~~~~~~~~~~~~~~i~~~D~~g~~ 73 (221)
..+..+|+|+|++|+|||||+++|+. +..... ... ..+.+.......+......+.+|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 34578999999999999999999884 222100 000 12333333333444456789999999999
Q ss_pred ccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 131 (221)
.+...+..+++.+|++++|+|+++..+.+....|.. +.. .+.|+++|+||+|+..
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~--~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT--YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH--TTCCEEEEEECTTSTT
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH--cCCCEEEEEECCCccc
Confidence 888888888999999999999998877666555543 333 3899999999999864
No 186
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.72 E-value=6.2e-17 Score=126.74 Aligned_cols=113 Identities=10% Similarity=0.084 Sum_probs=70.8
Q ss_pred EEEEEEecCCccc-------------cccccccccccccEEEEEEECCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCC
Q 027607 62 IRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (221)
Q Consensus 62 ~~i~~~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~ 127 (221)
..+.+|||||... +......++..+|++++|+|+.+.. .......+...+.. .+.|+++|+||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence 4689999999753 2334455688999999999975432 21222233333322 378999999999
Q ss_pred CcCCccc-cHHHHH-HHhhcCCeEEEeccc---C---CCChHHHHHHHHHHHhCCCC
Q 027607 128 DVKNRQV-KAKQVT-FHRKKNLQYYEISAK---S---NYNFEKPFLYLARKLAGDPN 176 (221)
Q Consensus 128 D~~~~~~-~~~~~~-~~~~~~~~~~~~s~~---~---~~gv~~~~~~l~~~l~~~~~ 176 (221)
|+..... ..+... .....+..++++++. + +.|+.+++..+...+...+.
T Consensus 209 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~ 265 (315)
T 1jwy_B 209 DLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPI 265 (315)
T ss_dssp TSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTT
T ss_pred ccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCc
Confidence 9865432 122221 001122456666554 4 78899999999988776654
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.72 E-value=7.7e-17 Score=138.15 Aligned_cols=118 Identities=17% Similarity=0.120 Sum_probs=83.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcC--ccCCc--cc------------CCcceeeeeeEEEecC-------cEEEEEEE
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK--YE------------PTIGVEVHPLDFFTNC-------GKIRFYCW 67 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~--~~~~~--~~------------~~~~~~~~~~~~~~~~-------~~~~i~~~ 67 (221)
.+..+|+|+|+.|+|||||+++|+.. .+... .. ...+.+.......+.. ..+.+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 45689999999999999999998742 11110 00 0123333332223322 23889999
Q ss_pred ecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 68 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 131 (221)
||||+.++...+..+++.+|++++|+|+++....+....|.. ... .+.|+++|+||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~--~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK--YKVPRIAFVNKMDRMG 148 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH--cCCCEEEEEeCCCccc
Confidence 999999988888889999999999999998765555444432 222 3799999999999754
No 188
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=128.95 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=78.3
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcc--------cCCcceeeeeeEEEecCcEEEEEEEecCCcccccc----
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---- 77 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~---- 77 (221)
..-.++|+|+|++|||||||+++|++..+.... .++.+...........+....+++||++|......
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 344689999999999999999997765542111 11111111111111122234789999999754311
Q ss_pred ---------------------ccccccccccEEEEEEECCCh-hhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCccc
Q 027607 78 ---------------------LRDGYYIHGQCAIIMFDVTAR-LTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (221)
Q Consensus 78 ---------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 134 (221)
+...++.++++.+++|..... .++.... .|+..+. .+.|+++|+||+|+.....
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHH
Confidence 123345566655555555433 3455444 4555553 3789999999999864322
Q ss_pred -c---HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607 135 -K---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (221)
Q Consensus 135 -~---~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~ 170 (221)
. ......+...++.++.+|+.++.++.++|..+...
T Consensus 185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 1 23445666778999999999999999888777664
No 189
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.69 E-value=2.4e-16 Score=131.52 Aligned_cols=117 Identities=17% Similarity=0.122 Sum_probs=87.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcc--------------------CCcccCCcceeeeeeEEEecCcEEEEEEEecCC
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--------------------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g 71 (221)
+.-+|+|+|+.++|||||..+|+.... ........|.+.......+.++++.++++||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 567999999999999999999873111 011122345555666666777788999999999
Q ss_pred ccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 131 (221)
+.+|..-....++-+|++++|+|+...--.+....|...... +.|.++++||+|...
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~---~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR---ATPVMTFVNKMDREA 166 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT---TCCEEEEEECTTSCC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh---CCceEEEEecccchh
Confidence 999999889999999999999999988666666666444332 899999999999754
No 190
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.69 E-value=2.3e-17 Score=128.34 Aligned_cols=133 Identities=14% Similarity=0.086 Sum_probs=105.1
Q ss_pred HHHHHHhcCccC-CcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEECCChh-hhccHH
Q 027607 28 TFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVP 105 (221)
Q Consensus 28 tL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 105 (221)
+|+++++.+.+. ..+.+|+|..+. .. +..+. .+.+||+ +++++.++..+++++|++++|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~--~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YT--PDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EE--CCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EE--EcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888888887 788899994433 33 22222 6899999 8899999999999999999999999987 688888
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcC--CeEEEecccCCCChHHHHHHHH
Q 027607 106 TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 106 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~gv~~~~~~l~ 168 (221)
.|+..+.. .+.|+++|+||+|+.+.....+...++...+ +.++++||++|.|++++|..+.
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHH--CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 89887654 4899999999999975433233444444445 8999999999999999997764
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.67 E-value=4.3e-17 Score=129.60 Aligned_cols=158 Identities=11% Similarity=0.116 Sum_probs=92.8
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCccc----CCcc----------------------eeee------------
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE----PTIG----------------------VEVH------------ 51 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~----~~~~----------------------~~~~------------ 51 (221)
....++|+|+|.+|||||||+|+|++..+.+... ..++ +++.
T Consensus 28 ~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~ 107 (353)
T 2x2e_A 28 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 107 (353)
T ss_dssp GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHH
Confidence 3456899999999999999999988766532211 1111 0100
Q ss_pred -----------eeEEEec-CcEEEEEEEecCCccc-------------ccccccccccccc-EEEEEEECCChhhhccHH
Q 027607 52 -----------PLDFFTN-CGKIRFYCWDTAGQEK-------------FGGLRDGYYIHGQ-CAIIMFDVTARLTYKNVP 105 (221)
Q Consensus 52 -----------~~~~~~~-~~~~~i~~~D~~g~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~ 105 (221)
.....+. .....+.+|||||... +..+...|+...+ ++++|.+++....-....
T Consensus 108 i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~ 187 (353)
T 2x2e_A 108 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187 (353)
T ss_dssp HHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH
T ss_pred hcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH
Confidence 0011111 1135799999999632 2334455665555 555566665432222222
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCcCCccc-cHHHHH---HHhhcC-CeEEEecccCCCChHHHHHHHHH
Q 027607 106 TWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVT---FHRKKN-LQYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 106 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~---~~~~~~-~~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
.+...+.. .+.|+++|+||+|+.+... ..+... .....+ ..++.+|+++|.|+.++++++.+
T Consensus 188 ~i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 188 KVAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 23333322 3789999999999865432 112111 011122 35678999999999999998876
No 192
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.67 E-value=6e-17 Score=129.12 Aligned_cols=153 Identities=12% Similarity=0.125 Sum_probs=96.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcc--------------------------------------------
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG-------------------------------------------- 47 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~-------------------------------------------- 47 (221)
.-.+|+|+|++|||||||+|+|++..+.+.......
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 344999999999999999999887665332222110
Q ss_pred --------eeeeeeEEEe-cCcEEEEEEEecCCcccc-------------ccccccccccccEEEEEEECCChhhhccHH
Q 027607 48 --------VEVHPLDFFT-NCGKIRFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMFDVTARLTYKNVP 105 (221)
Q Consensus 48 --------~~~~~~~~~~-~~~~~~i~~~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 105 (221)
.........+ ......+.+|||||...+ ..+...|+.+++++++|++..+..... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 0000011111 112345899999997765 445567789999999999876543332 2
Q ss_pred HHHHHHHhhc-CCCCEEEEEeCCCcCCccc-cHH-HHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607 106 TWHRDLCRVC-ENIPIVLCGNKVDVKNRQV-KAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (221)
Q Consensus 106 ~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~-~~~-~~~~~~~~~~~~~~~s~~~~~gv~~~~~~ 166 (221)
.|+..+.... .+.|+++|+||+|+.+... ..+ ........+..|+.+++.++.++++.+..
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 3333333322 3679999999999865332 222 22334456788999999998888765443
No 193
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.66 E-value=1.1e-16 Score=127.21 Aligned_cols=103 Identities=8% Similarity=-0.023 Sum_probs=70.5
Q ss_pred EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH-
Q 027607 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV- 139 (221)
Q Consensus 61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~- 139 (221)
+..+.+|||||... .....+..+|++++|+|.......+.+... ....|.++|+||+|+.+........
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~-------~~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG-------VLELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT-------SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh-------HhhcCCEEEEECCCCcChhHHHHHHH
Confidence 46789999999432 223345789999999998766544433311 1246999999999986532222111
Q ss_pred HHHh----------hcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607 140 TFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 140 ~~~~----------~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
.+.. .++.+++.+||++|.|+++++.+|.+.+..
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1111 125689999999999999999999987654
No 194
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.63 E-value=8.4e-16 Score=114.24 Aligned_cols=152 Identities=14% Similarity=0.090 Sum_probs=91.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCC----cccCCcceeee--------eeEEEe------------------cCcE
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK----KYEPTIGVEVH--------PLDFFT------------------NCGK 61 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~----~~~~~~~~~~~--------~~~~~~------------------~~~~ 61 (221)
+..+|+|+|.+|||||||+++|+...... ......+.+.. .....+ ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 45799999999999999999987642211 00011110000 000111 1123
Q ss_pred EEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc--ccHHHH
Q 027607 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQV 139 (221)
Q Consensus 62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~ 139 (221)
..+.+|||+|+.... ..+....+.+++|+|+++... ....+... ...|.++|+||+|+.... ...+..
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~ 178 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI-----FRVADLIVINKVALAEAVGADVEKMK 178 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH-----HHTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh-----hhcCCEEEEecccCCcchhhHHHHHH
Confidence 568899999851111 111125678999999876531 11111111 157899999999986431 222333
Q ss_pred HHHhh--cCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607 140 TFHRK--KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 140 ~~~~~--~~~~~~~~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
..... ...+++++|+++|.|+.+++.+|.+.+..
T Consensus 179 ~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 179 ADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 33333 25789999999999999999999987644
No 195
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.60 E-value=5e-16 Score=123.06 Aligned_cols=102 Identities=9% Similarity=0.004 Sum_probs=62.4
Q ss_pred EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHH-HH
Q 027607 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QV 139 (221)
Q Consensus 61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~ 139 (221)
+..+.++||+|.... .......+|.+++|+|++.+...+.+.. .+ -..|.++|+||+|+.+...... ..
T Consensus 166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl~~~~~~~~~~~ 235 (349)
T 2www_A 166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDGDLIVPARRIQA 235 (349)
T ss_dssp TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSGGGHHHHHHHHH
T ss_pred CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecCCCchhHHHHHH
Confidence 457899999995321 2334678999999999987543222211 11 2568899999999864221111 11
Q ss_pred HHH---h-------hcCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607 140 TFH---R-------KKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 140 ~~~---~-------~~~~~~~~~s~~~~~gv~~~~~~l~~~l~ 172 (221)
.+. . .+..+++.+|+++|.|+++++.+|.+.+.
T Consensus 236 ~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 236 EYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 111 0 12457899999999999999999988653
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.60 E-value=1.6e-15 Score=132.37 Aligned_cols=117 Identities=16% Similarity=0.180 Sum_probs=84.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCcc--CC------ccc------CCcceeee----eeEEE------------ecCc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--EK------KYE------PTIGVEVH----PLDFF------------TNCG 60 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~--~~------~~~------~~~~~~~~----~~~~~------------~~~~ 60 (221)
.+..+|+|+|+.|+|||||+++|+.... .. .+. ...+.+.. ..... .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 3567999999999999999999886411 00 000 01112221 11121 1334
Q ss_pred EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcC
Q 027607 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (221)
Q Consensus 61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 130 (221)
.+.+.+|||||+.++...+..+++.+|++++|+|+++..+++....|..... .+.|+++|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG---ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---cCCCeEEEEECCCcc
Confidence 7899999999999999988999999999999999999888877666654332 378999999999986
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.60 E-value=2.6e-14 Score=112.86 Aligned_cols=82 Identities=18% Similarity=0.047 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeee--EEEecCc---------------EEEEEEEecCCccccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCG---------------KIRFYCWDTAGQEKFG 76 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~i~~~D~~g~~~~~ 76 (221)
++|+++|.+|||||||+|+|...... ..+.+++|.... .+.+.+. ...+.+|||||.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~--v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIE--AANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 78999999999999999998876531 111111121111 2223321 1579999999987542
Q ss_pred ----ccccc---ccccccEEEEEEECCC
Q 027607 77 ----GLRDG---YYIHGQCAIIMFDVTA 97 (221)
Q Consensus 77 ----~~~~~---~~~~~d~~i~v~d~~~ 97 (221)
.+... +++.+|++++|+|+++
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 23333 4789999999999986
No 198
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.58 E-value=1e-14 Score=108.76 Aligned_cols=152 Identities=14% Similarity=0.128 Sum_probs=85.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeee------------eeEEEec-Cc-----------------
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH------------PLDFFTN-CG----------------- 60 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~----------------- 60 (221)
.+.++|+|+|.+|||||||+++|+.+.+......+.+.+.. .....++ +.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 35689999999999999999998876544322333332221 1111111 10
Q ss_pred --EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc--ccH
Q 027607 61 --KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKA 136 (221)
Q Consensus 61 --~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~ 136 (221)
...+.++|++|.-... ..+-...+..+.+.++........ .....+ ..|.++|+||+|+.... ...
T Consensus 116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~-----~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGIM-----KTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH-----TTCSEEEEECGGGHHHHTCCHH
T ss_pred cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhHh-----hcCCEEEEeccccCchhHHHHH
Confidence 0134455555521000 011112334456666432211110 001111 57889999999986532 222
Q ss_pred HHHHHHhh--cCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607 137 KQVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 137 ~~~~~~~~--~~~~~~~~s~~~~~gv~~~~~~l~~~l~ 172 (221)
+....... .+.+++++|+++|.|++++|.+|.+.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 33334433 3678999999999999999999998764
No 199
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.58 E-value=3e-15 Score=118.32 Aligned_cols=102 Identities=11% Similarity=-0.024 Sum_probs=65.3
Q ss_pred EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH-
Q 027607 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV- 139 (221)
Q Consensus 61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~- 139 (221)
++.+.+|||||...... .....+|++++|+|++....++.+.... .+.|.++|+||+|+.+........
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKGL-------MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHHH-------HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHhh-------hcccCEEEEECCCCCChHHHHHHHH
Confidence 46799999999654322 2467899999999997654433322210 146889999999987532211111
Q ss_pred HHH---hh-------cCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607 140 TFH---RK-------KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 140 ~~~---~~-------~~~~~~~~s~~~~~gv~~~~~~l~~~l~ 172 (221)
.+. .. +..+++++|+++|.|+++++.+|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111 11 1457899999999999999999988664
No 200
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.57 E-value=2.6e-15 Score=125.38 Aligned_cols=118 Identities=18% Similarity=0.137 Sum_probs=77.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCC-cccCCcceeeeeeEEEecC------------------------------c
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNC------------------------------G 60 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~------------------------------~ 60 (221)
..++|+|+|.+|||||||+|+|++..+.. ......+++... .+.... +
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~-~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV-AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE-EEECCSSSEEECCC------------------CCCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE-EEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 56899999999999999999988776531 122222221110 000000 0
Q ss_pred E----------EEEEEEecCCccc-----------cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC
Q 027607 61 K----------IRFYCWDTAGQEK-----------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP 119 (221)
Q Consensus 61 ~----------~~i~~~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p 119 (221)
- ..+.+|||||... +......++..+|++++|+|+++.........|+..+... ..|
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~p 220 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--EDK 220 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--GGG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--CCC
Confidence 0 2588999999764 2233445678899999999998754444455555554432 579
Q ss_pred EEEEEeCCCcCCc
Q 027607 120 IVLCGNKVDVKNR 132 (221)
Q Consensus 120 ~ivv~nK~D~~~~ 132 (221)
+++|+||+|+...
T Consensus 221 vilVlNK~Dl~~~ 233 (550)
T 2qpt_A 221 IRVVLNKADMVET 233 (550)
T ss_dssp EEEEEECGGGSCH
T ss_pred EEEEEECCCccCH
Confidence 9999999998753
No 201
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.56 E-value=9.2e-16 Score=130.34 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=86.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC--ccCC--c------cc------CCcceeeeeeEEEecCcEEEEEEEecCCcccccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTG--EFEK--K------YE------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~--~~~~--~------~~------~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~ 77 (221)
-||+|+|+.++|||||..+|+.. .... . +. ...|.|.......+.++++.++++||||+.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 47999999999999999998741 1110 0 00 1114555555566677788899999999999998
Q ss_pred ccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 131 (221)
-....++-+|++++|+|+...-.-+....|...... +.|.++++||+|...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM---GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH---TCSCEECCEECCSSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc---CCCeEEEEecccccc
Confidence 888899999999999999987655555455443333 789999999999754
No 202
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.52 E-value=1.1e-13 Score=119.08 Aligned_cols=117 Identities=20% Similarity=0.166 Sum_probs=82.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcc--------CC--------cccCCcceeeeeeEEEecC-------cEEEEEEEe
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--------EK--------KYEPTIGVEVHPLDFFTNC-------GKIRFYCWD 68 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~--------~~--------~~~~~~~~~~~~~~~~~~~-------~~~~i~~~D 68 (221)
+--+|+|+|+.++|||||..+|+.... .. ......|.|.....+++.+ +++.++++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 345899999999999999999874211 00 0112234444444343322 368899999
Q ss_pred cCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 131 (221)
|||+.+|..-....++-+|++++|+|+...-..+....|...... +.|.++++||+|...
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~---~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY---GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH---TCCEEEEEECSSSTT
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc---CCCeEEEEccccccC
Confidence 999999999888899999999999999987666665566555444 899999999999753
No 203
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.51 E-value=7.3e-14 Score=110.90 Aligned_cols=82 Identities=15% Similarity=-0.015 Sum_probs=52.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeE--EEecC-------------------cEEEEEEEecCCc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD--FFTNC-------------------GKIRFYCWDTAGQ 72 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~-------------------~~~~i~~~D~~g~ 72 (221)
++|+++|.+|||||||+|++..... .....+++|..+.. ..+.. ....+.+|||||.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~--~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANA--LAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHT--TCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 6899999999999999999776431 11111111111111 11111 2357999999998
Q ss_pred cccc----cccc---cccccccEEEEEEECCC
Q 027607 73 EKFG----GLRD---GYYIHGQCAIIMFDVTA 97 (221)
Q Consensus 73 ~~~~----~~~~---~~~~~~d~~i~v~d~~~ 97 (221)
.... .+.. ..++.+|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 6543 2222 24689999999999985
No 204
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.50 E-value=5.6e-14 Score=107.03 Aligned_cols=113 Identities=13% Similarity=0.005 Sum_probs=69.0
Q ss_pred EEEEEEecCCccccccccc------cccccccEEEEEEECCChhhhccHHHHHHHH-H-hhcCCCCEEEEEeCCCcCCcc
Q 027607 62 IRFYCWDTAGQEKFGGLRD------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-C-RVCENIPIVLCGNKVDVKNRQ 133 (221)
Q Consensus 62 ~~i~~~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~-~-~~~~~~p~ivv~nK~D~~~~~ 133 (221)
+.+.+|||||......... ..+.. +++++++|+................ . ....+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4789999999865433221 23455 8888899876433222221111111 1 111378999999999986532
Q ss_pred ccHHHHHH----------------------------Hhhc--CCeEEEecccCCCChHHHHHHHHHHHhCCC
Q 027607 134 VKAKQVTF----------------------------HRKK--NLQYYEISAKSNYNFEKPFLYLARKLAGDP 175 (221)
Q Consensus 134 ~~~~~~~~----------------------------~~~~--~~~~~~~s~~~~~gv~~~~~~l~~~l~~~~ 175 (221)
...+...+ .... ..+++++|+++|.|+++++.+|.+.+...+
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~ 259 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTCG 259 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcccc
Confidence 11111100 1222 247899999999999999999998775544
No 205
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.50 E-value=1.7e-13 Score=117.28 Aligned_cols=165 Identities=13% Similarity=0.157 Sum_probs=99.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccC--C------------------------------------------
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--T------------------------------------------ 45 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~--~------------------------------------------ 45 (221)
.....+|+|+|..++|||||+|+|++..+.+.... |
T Consensus 48 ~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 48 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp GGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 34567999999999999999999887654221110 0
Q ss_pred -----cceeeeeeEEEec-CcEEEEEEEecCCcccc-------------cccccccc-ccccEEEEEEECCChhhhccHH
Q 027607 46 -----IGVEVHPLDFFTN-CGKIRFYCWDTAGQEKF-------------GGLRDGYY-IHGQCAIIMFDVTARLTYKNVP 105 (221)
Q Consensus 46 -----~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~-------------~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~ 105 (221)
.+++.......+. .....+.++||||.... ..+...|+ ..+|++++|+|++.........
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 0001111111111 11234789999995431 11223333 4789999999998764443332
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhh----cC-CeEEEecccCCCChHHHHHHHHHH---HhCCCC
Q 027607 106 TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK----KN-LQYYEISAKSNYNFEKPFLYLARK---LAGDPN 176 (221)
Q Consensus 106 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~-~~~~~~s~~~~~gv~~~~~~l~~~---l~~~~~ 176 (221)
.+...+.. .+.|+++|+||+|+.+............. .+ ..++.+||++|.|++++++.|.+. +..+|.
T Consensus 208 ~ll~~L~~--~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~ 284 (772)
T 3zvr_A 208 KIAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPS 284 (772)
T ss_dssp HHHHHHCT--TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHh--cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccCCcc
Confidence 34444433 37899999999998654322111111111 12 356789999999999999999873 444554
No 206
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.9e-13 Score=108.54 Aligned_cols=115 Identities=12% Similarity=-0.011 Sum_probs=80.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc----cc---ccccccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----LR---DGYYIHG 86 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~----~~---~~~~~~~ 86 (221)
.+|+++|.||||||||+|+|.+.. ....+.+++|..+....+...+.++.++||||...... .. ...++.+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC 150 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence 589999999999999999966543 44566777888888777666678899999999643211 11 2236789
Q ss_pred cEEEEEEECCChhhh-ccHHHHHHHHHhhcCCCCEEEEEeCCCcC
Q 027607 87 QCAIIMFDVTARLTY-KNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (221)
Q Consensus 87 d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 130 (221)
|++++|+|++++... +.+...+..+.....+.|.++++||.|..
T Consensus 151 d~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 151 NLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp SEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred CccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 999999999987432 21222222222223578889999999963
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.36 E-value=1.8e-12 Score=102.11 Aligned_cols=102 Identities=8% Similarity=0.008 Sum_probs=61.2
Q ss_pred EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC-ccccHHH-
Q 027607 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQ- 138 (221)
Q Consensus 61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~- 138 (221)
+..+.++||+|..... ......+|.+++++|+......+.+..... ..+.++++||+|+.. .......
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~-------~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIF-------ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHH-------HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHHh-------ccccEEEEEchhccCchhHHHHHH
Confidence 4678999999964321 223468899999999865432211111111 235677789999643 2211111
Q ss_pred HHHHh----------hcCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607 139 VTFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 139 ~~~~~----------~~~~~~~~~s~~~~~gv~~~~~~l~~~l~ 172 (221)
..+.. .+..+++.+|++++.|++++++.|.+.+.
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 11111 11356888999999999999999988653
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.32 E-value=7.8e-12 Score=97.10 Aligned_cols=95 Identities=16% Similarity=0.087 Sum_probs=77.0
Q ss_pred ccccccccccccccccEEEEEEECCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc---cHHHHHHHhhcCC
Q 027607 72 QEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNL 147 (221)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~ 147 (221)
+++++.+.+.+++++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+... ..+...++...+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~ 143 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY 143 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC
Confidence 6677788888999999999999999886 88888888886654 4899999999999975431 2334455666788
Q ss_pred eEEEecccCCCChHHHHHHHH
Q 027607 148 QYYEISAKSNYNFEKPFLYLA 168 (221)
Q Consensus 148 ~~~~~s~~~~~gv~~~~~~l~ 168 (221)
+++++||++|.|+++++..+.
T Consensus 144 ~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 144 DVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp EEEECCTTTCTTHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHhhcc
Confidence 999999999999999886643
No 209
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.27 E-value=3e-12 Score=102.06 Aligned_cols=88 Identities=17% Similarity=0.003 Sum_probs=48.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeE--EEecCc---------------EEEEEEEecCCccc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD--FFTNCG---------------KIRFYCWDTAGQEK 74 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------------~~~i~~~D~~g~~~ 74 (221)
..++|+++|.+|||||||+|++..... ...+.+++|..... +.+.+. ...+.+|||||...
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 458999999999999999999776543 22233333333222 222221 23599999999765
Q ss_pred ccc-------ccccccccccEEEEEEECCChhhh
Q 027607 75 FGG-------LRDGYYIHGQCAIIMFDVTARLTY 101 (221)
Q Consensus 75 ~~~-------~~~~~~~~~d~~i~v~d~~~~~s~ 101 (221)
... .+..+++.+|++++|+|+++..++
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC------
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 433 334567899999999999865443
No 210
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.26 E-value=6.5e-12 Score=90.74 Aligned_cols=103 Identities=6% Similarity=-0.095 Sum_probs=69.4
Q ss_pred CCccccccccccccccccEEEEEEECCChhhhccHHHHHHHH----Hhh--cCCCCEEEEEeCC-CcCCccccHHHHHHH
Q 027607 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL----CRV--CENIPIVLCGNKV-DVKNRQVKAKQVTFH 142 (221)
Q Consensus 70 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~----~~~--~~~~p~ivv~nK~-D~~~~~~~~~~~~~~ 142 (221)
+|+..++.+|..|+.++|++|||+|++|...++ .+..+..+ ... ..+.|++|++||. |++......+.....
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L 188 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL 188 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHc
Confidence 478899999999999999999999999886654 33333222 222 1478999999995 776654433332111
Q ss_pred ----hhcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607 143 ----RKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 143 ----~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
....+.+..|||.+|.|+.+.++||...+..
T Consensus 189 ~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 189 HLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp TGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred CCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 1246778999999999999999999886543
No 211
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.11 E-value=9.7e-11 Score=88.71 Aligned_cols=104 Identities=6% Similarity=-0.119 Sum_probs=74.9
Q ss_pred cCCccccccccccccccccEEEEEEECCChhhhccHHHHHH----HHHhh--cCCCCEEEEEeC-CCcCCccccHHHHHH
Q 027607 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR----DLCRV--CENIPIVLCGNK-VDVKNRQVKAKQVTF 141 (221)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~----~~~~~--~~~~p~ivv~nK-~D~~~~~~~~~~~~~ 141 (221)
.+|+...+.+|..|+.++|++|||+|++|.+.++ .+..+. .+... ..+.|++|++|| .|+++.....+....
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4578899999999999999999999999988765 333222 22222 258999999997 588765444333211
Q ss_pred H----hhcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607 142 H----RKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (221)
Q Consensus 142 ~----~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~ 173 (221)
. ....+.+..|||.+|.|+.+.++||.+.+..
T Consensus 273 L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 273 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred cCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 1 1246778999999999999999999997643
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.06 E-value=3.4e-11 Score=96.01 Aligned_cols=138 Identities=12% Similarity=0.054 Sum_probs=80.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCc----cCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc----cc---
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGE----FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----DG--- 81 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~----~~--- 81 (221)
..+|+++|.+|+|||||+|+|+... .........|+|.....+.+..+ +.++||||........ ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 4589999999999999999977541 12233455667777666665543 7899999964322111 11
Q ss_pred cc---ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH-HHHhhcCCeEEEecccC
Q 027607 82 YY---IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKS 156 (221)
Q Consensus 82 ~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~s~~~ 156 (221)
.+ ...+.++++++......+..+.. +..+. ..+.|+++++||.|........... .+....+..+.+.++..
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~--~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l~p~~~~~ 314 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIK--GGRRSFVCYMANELTVHRTKLEKADSLYANQLGELLSPPSKRY 314 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTTBCSSCGGG
T ss_pred HHhcccccCceEEEEcCCceEEECCEEE-EEEcc--CCCceEEEEecCCcccccccHHHHHHHHHHhcCCccCCCCchh
Confidence 11 56788999998843211111110 00001 1367999999999976544433333 33344444444444433
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.05 E-value=4.9e-11 Score=95.03 Aligned_cols=121 Identities=12% Similarity=0.056 Sum_probs=71.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCc-----cCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccc----cc-
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTGE-----FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD----GY- 82 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~----~~- 82 (221)
..+|+++|.+|+|||||+|+++... .........++|.....+.+..+ +.++||||......+.. ..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 4689999999999999999977642 12234566677777776666544 78999999643322111 11
Q ss_pred -----cccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH
Q 027607 83 -----YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV 139 (221)
Q Consensus 83 -----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 139 (221)
....+.++++++......+..+.. +..+. ..+.|+++++||.|...........
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~--~~~~~~~~v~nk~d~~~~~~~~~~~ 295 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVS--GGRRAFTCHFSNRLTIHRTKLEKAD 295 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSCEEEEEHHHHH
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE-EEEec--CCCceEEEEecCccccccccHHHHH
Confidence 245678888888743211111110 00001 1367999999999986554444443
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.01 E-value=2.2e-09 Score=86.45 Aligned_cols=117 Identities=17% Similarity=0.243 Sum_probs=59.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcc--cCCcceeeeeeEEEecCcE--EEEEEEecCCcccccc----------
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--EPTIGVEVHPLDFFTNCGK--IRFYCWDTAGQEKFGG---------- 77 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~i~~~D~~g~~~~~~---------- 77 (221)
..++++|+|++|||||||+|.+++-.+.... ....+.......+...... ..+.++|++|......
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 3467999999999999999996654322111 1122223333333333222 3688999988532100
Q ss_pred ----cc----cc---------ccccc--c-EEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc
Q 027607 78 ----LR----DG---------YYIHG--Q-CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (221)
Q Consensus 78 ----~~----~~---------~~~~~--d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 132 (221)
.+ .. .+..+ | +++++.|+....+..++ .++..+ ..+.|+|+|.||+|....
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-eilk~L---~~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-VTMKKL---DSKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-HHHHHT---CSCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-HHHHHH---hhCCCEEEEEcchhccch
Confidence 00 00 11122 2 35556666543322221 222222 248899999999997543
No 215
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.96 E-value=1.4e-09 Score=87.00 Aligned_cols=85 Identities=15% Similarity=0.034 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeee--EEEecCc---------------EEEEEEEecCCccc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCG---------------KIRFYCWDTAGQEK 74 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~i~~~D~~g~~~ 74 (221)
+..+|+++|++|||||||+|+|.+... ....+.++++.... .+.+.+. ...+.+||+||...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~-a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVL-GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTT-TSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc-ccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 357999999999999999999776443 12222333333322 2333321 13689999999643
Q ss_pred ccc-------ccccccccccEEEEEEECCC
Q 027607 75 FGG-------LRDGYYIHGQCAIIMFDVTA 97 (221)
Q Consensus 75 ~~~-------~~~~~~~~~d~~i~v~d~~~ 97 (221)
..+ .....++.+|+++.|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 221 22334678999999999874
No 216
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.94 E-value=4.7e-09 Score=80.09 Aligned_cols=23 Identities=35% Similarity=0.759 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
.++++|+|++|||||||+|.+++
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 58999999999999999999665
No 217
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.93 E-value=2.2e-09 Score=80.24 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=42.6
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-+|-+.....|+++++.+|++.++|||+++ +|+.....+.+.+++++.
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~-----LD~~~~~~i~~~l~~l~~ 193 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWA-----LDSKTGEKIMQLLKKLNE 193 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 345566678899999999999999999999 999999999999998864
No 218
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.91 E-value=1.4e-09 Score=82.70 Aligned_cols=48 Identities=33% Similarity=0.342 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHHHhC------CCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 158 YNFEKPFLYLARKLAG------DPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~------~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
+|-+.....|++++.. +|++.++|||+++ +|+..+..+.+.++++..+
T Consensus 143 SgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~-----LD~~~~~~i~~~l~~l~~~ 196 (266)
T 4g1u_C 143 SGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSA-----LDLYHQQHTLRLLRQLTRQ 196 (266)
T ss_dssp CHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSS-----CCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccccCCCCCEEEEeCcccc-----CCHHHHHHHHHHHHHHHHc
Confidence 4556666789999998 9999999999999 9999999999999988643
No 219
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.90 E-value=1.7e-09 Score=85.35 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=43.4
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-+|-++....|++++..+|++.++|||+++ +|+..+..+.+.+++++.+
T Consensus 164 LSGGqkQRVaIArAL~~~P~lLLlDEPTs~-----LD~~~~~~i~~lL~~l~~~ 212 (366)
T 3tui_C 164 LSGGQKQRVAIARALASNPKVLLCDQATSA-----LDPATTRSILELLKDINRR 212 (366)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCcc-----CCHHHHHHHHHHHHHHHHh
Confidence 346667778899999999999999999999 9999999999999988643
No 220
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.90 E-value=4.4e-09 Score=79.57 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=43.4
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
-+|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++.+++
T Consensus 147 LSgGq~qRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~g 196 (256)
T 1vpl_A 147 YSKGMVRKLLIARALMVNPRLAILDEPTSG-----LDVLNAREVRKILKQASQEG 196 (256)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccc-----cCHHHHHHHHHHHHHHHhCC
Confidence 345566667899999999999999999999 99999999999999886544
No 221
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.89 E-value=3.9e-09 Score=86.97 Aligned_cols=152 Identities=13% Similarity=0.020 Sum_probs=83.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc-----CccCCcccC-----C-----------cceeeeeeEEE-------------
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLT-----GEFEKKYEP-----T-----------IGVEVHPLDFF------------- 56 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~-----~~~~~~~~~-----~-----------~~~~~~~~~~~------------- 56 (221)
.+...|+|+|.+||||||++++|.. +.-...... . .+.........
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999772 211100000 0 00111110000
Q ss_pred ecCcEEEEEEEecCCcccccc-cccc---c--cccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCE-EEEEeCCCc
Q 027607 57 TNCGKIRFYCWDTAGQEKFGG-LRDG---Y--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDV 129 (221)
Q Consensus 57 ~~~~~~~i~~~D~~g~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~ 129 (221)
.....+.+.++||||...... .... + +..+|.+++|+|+..... .......+.. ..|+ ++|+||.|.
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~---~~~~a~~~~~---~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA---CEAQAKAFKD---KVDVASVIVTKLDG 252 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT---HHHHHHHHHH---HHCCCCEEEECTTS
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc---HHHHHHHHHh---hcCceEEEEeCCcc
Confidence 001346789999999653211 1111 1 226899999999987532 1122222222 2574 889999997
Q ss_pred CCccccHHHHHHHhhcCCe------------------EEEecccCCCC-hHHHHHHHHHH
Q 027607 130 KNRQVKAKQVTFHRKKNLQ------------------YYEISAKSNYN-FEKPFLYLARK 170 (221)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~------------------~~~~s~~~~~g-v~~~~~~l~~~ 170 (221)
..+.. .........+.+ .+.+|+..|.| +..+++++.+.
T Consensus 253 ~~~~g--~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGG--GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCT--HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchH--HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 64321 122222222222 23378889989 99988888764
No 222
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.89 E-value=3.4e-09 Score=78.69 Aligned_cols=50 Identities=22% Similarity=0.211 Sum_probs=43.4
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
-+|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++++++
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~-----LD~~~~~~~~~~l~~l~~~g 190 (224)
T 2pcj_A 141 LSGGEQQRVAIARALANEPILLFADEPTGN-----LDSANTKRVMDIFLKINEGG 190 (224)
T ss_dssp SCHHHHHHHHHHHHTTTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHHCC
Confidence 345566667899999999999999999999 99999999999999886554
No 223
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.88 E-value=2.3e-09 Score=81.93 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=42.3
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhh
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
-+|-+.....|++++..+|++.++|||+++ +|+.....+.+.+++++
T Consensus 144 LSgGqkQRv~iAraL~~~P~lLlLDEPts~-----LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAG-----LDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEECTTTT-----CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHHH
Confidence 345666678899999999999999999999 99999999999999886
No 224
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.87 E-value=1.2e-08 Score=75.14 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=42.1
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-.|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++.+
T Consensus 134 LSgGqkqrv~laraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~~~~ 181 (214)
T 1sgw_A 134 LSQGTIRRVQLASTLLVNAEIYVLDDPVVA-----IDEDSKHKVLKSILEILK 181 (214)
T ss_dssp SCHHHHHHHHHHHHTTSCCSEEEEESTTTT-----SCTTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCCcC-----CCHHHHHHHHHHHHHHHh
Confidence 345566678899999999999999999999 999999999999988764
No 225
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.86 E-value=9.3e-09 Score=77.92 Aligned_cols=50 Identities=8% Similarity=0.125 Sum_probs=43.7
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
-.|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++++++
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~g 203 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAG-----VAPGLAHDIFNHVLELKAKG 203 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHHCC
Confidence 345566667899999999999999999999 99999999999999886654
No 226
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.86 E-value=9e-09 Score=78.13 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=43.6
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
-.|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++++++
T Consensus 160 LSgGqkQRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~~~~~l~~l~~~g 209 (263)
T 2olj_A 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSA-----LDPEMVGEVLSVMKQLANEG 209 (263)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhCC
Confidence 345566667899999999999999999999 99999999999999886554
No 227
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.85 E-value=1.5e-08 Score=80.46 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=42.9
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-+|-+.....|++++..+|++.++|||+++ +|+.....+...++++..+
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~-----LD~~~~~~l~~~l~~l~~~ 182 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSN-----LDAALRVQMRIEISRLHKR 182 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcC-----CCHHHHHHHHHHHHHHHHh
Confidence 345666678899999999999999999999 9999999999999988643
No 228
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.83 E-value=1.2e-08 Score=82.17 Aligned_cols=160 Identities=17% Similarity=0.165 Sum_probs=83.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCc-c--eeeeeeEEEecCcEEEEEEEecCCccccccccccc-----c
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-G--VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-----Y 83 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~-----~ 83 (221)
....++|+|++|||||||+|.+++-.......-.. + ++....... ......+.+||++|..........+ +
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 44689999999999999999966522111111111 1 111111111 1111247889999853221111111 2
Q ss_pred ccccEEEEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcC---------CccccHH----HHHHH----hhc
Q 027607 84 IHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVK---------NRQVKAK----QVTFH----RKK 145 (221)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~---------~~~~~~~----~~~~~----~~~ 145 (221)
...+..++ ++.... ...+ .+...+.. .+.|+++|.||.|+. +.....+ ....+ ...
T Consensus 147 ~~~~~~~~-lS~G~~---~kqrv~la~aL~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 147 YEYDFFII-ISATRF---KKNDIDIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp GGCSEEEE-EESSCC---CHHHHHHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CccCCeEE-eCCCCc---cHHHHHHHHHHHh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 33355444 665421 1111 12222222 278999999999952 1111111 11222 122
Q ss_pred C---CeEEEecc--cCCCChHHHHHHHHHHHhCCCCCc
Q 027607 146 N---LQYYEISA--KSNYNFEKPFLYLARKLAGDPNLH 178 (221)
Q Consensus 146 ~---~~~~~~s~--~~~~gv~~~~~~l~~~l~~~~~~~ 178 (221)
+ ...+.+|+ ..+.|++++.+.|.+.+..+++..
T Consensus 221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~ 258 (413)
T 1tq4_A 221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHN 258 (413)
T ss_dssp TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHH
T ss_pred CCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhH
Confidence 2 35788899 556679999999998877766544
No 229
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.82 E-value=1.6e-08 Score=76.45 Aligned_cols=49 Identities=24% Similarity=0.308 Sum_probs=43.0
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-+|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++.++
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~ 177 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSA-----LDLANQDIVLSLLIDLAQS 177 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTT-----SCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence 345566667899999999999999999999 9999999999999988654
No 230
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.81 E-value=1.7e-08 Score=76.66 Aligned_cols=50 Identities=18% Similarity=0.184 Sum_probs=43.7
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
-+|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++++++
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~~~~~l~~l~~~g 203 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSA-----LDPELVGEVLRIMQQLAEEG 203 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHhCC
Confidence 345566667899999999999999999999 99999999999999887654
No 231
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.81 E-value=2.9e-08 Score=78.32 Aligned_cols=49 Identities=20% Similarity=0.229 Sum_probs=42.6
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-+|-+.....|++++..+|++.++|||.++ +|+.....+.+.++++..+
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~~ 194 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPFAA-----IDTQIRRELRTFVRQVHDE 194 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTCC-----SSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence 345566678899999999999999999999 9999999999999987643
No 232
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.81 E-value=2.5e-09 Score=80.19 Aligned_cols=48 Identities=27% Similarity=0.272 Sum_probs=42.1
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-+|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++..
T Consensus 127 LSgGqkqRv~lAral~~~p~lllLDEPts~-----LD~~~~~~~~~~l~~l~~ 174 (240)
T 2onk_A 127 LSGGERQRVALARALVIQPRLLLLDEPLSA-----VDLKTKGVLMEELRFVQR 174 (240)
T ss_dssp SCHHHHHHHHHHHHHTTCCSSBEEESTTSS-----CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence 345566667899999999999999999999 999999999999998754
No 233
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.80 E-value=8.5e-09 Score=81.36 Aligned_cols=47 Identities=30% Similarity=0.321 Sum_probs=40.3
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhh
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
-+|-+.....|+++++.+|++.++|||.++ +|+.........+.++.
T Consensus 139 LSGGq~QRValArAL~~~P~lLLLDEPts~-----LD~~~r~~l~~~l~~~~ 185 (359)
T 3fvq_A 139 LSGGQQQRAALARALAPDPELILLDEPFSA-----LDEQLRRQIREDMIAAL 185 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHH
Confidence 345666678899999999999999999999 99999999988776654
No 234
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.80 E-value=2e-08 Score=75.26 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=43.3
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
-.|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++++++
T Consensus 140 LSgGq~qrv~lAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~~~~~g 189 (240)
T 1ji0_A 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLG-----LAPILVSEVFEVIQKINQEG 189 (240)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEECTTTT-----CCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHCC
Confidence 345566667899999999999999999999 99999999999999886544
No 235
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.79 E-value=1.2e-08 Score=77.64 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=43.9
Q ss_pred CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
+-.|-+.....|++++..+|++.++|||+++ +|+.....+.+.+++++.++
T Consensus 138 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~g 188 (266)
T 2yz2_A 138 FLSGGEKRRVAIASVIVHEPDILILDEPLVG-----LDREGKTDLLRIVEKWKTLG 188 (266)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCcccc-----CCHHHHHHHHHHHHHHHHcC
Confidence 3345566667899999999999999999999 99999999999999886544
No 236
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.78 E-value=3.6e-08 Score=78.03 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=42.4
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-+|-+.....|++++..+|++.++|||.++ +|+.......+.++++.+
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~ 181 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSN-----LDALLRLEVRAELKRLQK 181 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGGGG-----SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHHHH
Confidence 345566678899999999999999999999 999999999999998754
No 237
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.78 E-value=1.6e-08 Score=77.44 Aligned_cols=50 Identities=24% Similarity=0.331 Sum_probs=43.3
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
-.|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++..++
T Consensus 162 LSgGqkqRv~lAraL~~~p~lLlLDEPts~-----LD~~~~~~l~~~l~~l~~~g 211 (279)
T 2ihy_A 162 LSTGEKQRVMIARALMGQPQVLILDEPAAG-----LDFIARESLLSILDSLSDSY 211 (279)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCccc-----cCHHHHHHHHHHHHHHHHCC
Confidence 345566667899999999999999999999 99999999999999886543
No 238
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.77 E-value=9.9e-09 Score=78.76 Aligned_cols=59 Identities=19% Similarity=0.165 Sum_probs=35.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~ 73 (221)
...++|+++|.+|||||||+|+++... .....+.+|+|.....+.+.. .+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~-~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKN-IAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSC-CC------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCc-eeecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 456899999999999999999976443 334555666666554444432 47899999964
No 239
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.77 E-value=6.4e-08 Score=76.95 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=42.2
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-+|-+.....|++++..+|++.++|||.++ +|+.......+.++++..
T Consensus 140 LSGGq~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~ 187 (372)
T 1g29_1 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSN-----LDAKLRVRMRAELKKLQR 187 (372)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTT-----SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCCcc-----CCHHHHHHHHHHHHHHHH
Confidence 345566678899999999999999999999 999999999999988754
No 240
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.76 E-value=4e-08 Score=78.04 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=43.0
Q ss_pred ecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 152 ~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
.+.++|. +.....|++++..+|++.++|||.++ +|+.......+.++++..+
T Consensus 139 ~~~LSGG--q~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~~ 190 (372)
T 1v43_A 139 PAQLSGG--QRQRVAVARAIVVEPDVLLMDEPLSN-----LDAKLRVAMRAEIKKLQQK 190 (372)
T ss_dssp TTTCCSS--CHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHHH
T ss_pred hhhCCHH--HHHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHHHh
Confidence 3444444 44457799999999999999999999 9999999999999987643
No 241
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.76 E-value=4.3e-08 Score=77.52 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=42.4
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-+|-+.....|++++..+|++.++|||.++ +|+.......+.++++.+
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~ 181 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPLSN-----LDANLRMIMRAEIKHLQQ 181 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHH
Confidence 345566678899999999999999999999 999999999999998754
No 242
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.74 E-value=2.7e-08 Score=75.52 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=41.9
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-.|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++..
T Consensus 129 LSgGqkqRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~L~~~~~ 176 (263)
T 2pjz_A 129 LSAGQSVLVRTSLALASQPEIVGLDEPFEN-----VDAARRHVISRYIKEYGK 176 (263)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTT-----CCHHHHHHHHHHHHHSCS
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCccc-----cCHHHHHHHHHHHHHhcC
Confidence 345566667899999999999999999999 999999999999988754
No 243
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.74 E-value=1.5e-08 Score=80.75 Aligned_cols=109 Identities=19% Similarity=0.227 Sum_probs=79.1
Q ss_pred ccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH-HH----HHHHhhcC
Q 027607 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQ----VTFHRKKN 146 (221)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~----~~~~~~~~ 146 (221)
.+.++.....+++.++++++|+|+++.. ..|...+.....+.|+++|+||+|+.+..... +. ...+...+
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g 130 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLG 130 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcC
Confidence 4677888888888999999999999864 34444455545689999999999996544321 11 12345556
Q ss_pred C---eEEEecccCCCChHHHHHHHHHHHhCCCCCccccCCCCC
Q 027607 147 L---QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALA 186 (221)
Q Consensus 147 ~---~~~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~ 186 (221)
. .++.+||++|.|++++++.|.+.. ....+.++-.|..+
T Consensus 131 ~~~~~v~~iSA~~g~gi~~L~~~l~~~~-~~~~i~~vG~~nvG 172 (368)
T 3h2y_A 131 LKPEDVFLISAAKGQGIAELADAIEYYR-GGKDVYVVGCTNVG 172 (368)
T ss_dssp CCCSEEEECCTTTCTTHHHHHHHHHHHH-TTSCEEEEEBTTSS
T ss_pred CCcccEEEEeCCCCcCHHHHHhhhhhhc-ccceEEEecCCCCC
Confidence 6 799999999999999999987744 44556666665554
No 244
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.74 E-value=2.3e-08 Score=79.02 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=42.3
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-+|-+.....|++++..+|++.++|||.++ +|+.......+.++++..
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~ 188 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSN-----LDARMRDSARALVKEVQS 188 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHH
Confidence 345566678899999999999999999999 999999999999998754
No 245
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.72 E-value=6.3e-09 Score=80.57 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=43.4
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
-.|-+.....|+++++.+|++.++|||+++ +|+.....+.+.++++...
T Consensus 191 LSGGqrQRvaiARAL~~~p~iLlLDEPts~-----LD~~~~~~i~~~l~~l~~~ 239 (306)
T 3nh6_A 191 LSGGEKQRVAIARTILKAPGIILLDEATSA-----LDTSNERAIQASLAKVCAN 239 (306)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCSSC-----CCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCccc-----CCHHHHHHHHHHHHHHcCC
Confidence 346677778899999999999999999999 9999999999999887653
No 246
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.72 E-value=3.5e-08 Score=75.70 Aligned_cols=100 Identities=12% Similarity=0.053 Sum_probs=69.6
Q ss_pred ecCCcc-ccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcC
Q 027607 68 DTAGQE-KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN 146 (221)
Q Consensus 68 D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 146 (221)
..||+. .........+..+|+++.|+|+.++.+..+. .+.....++|.++|+||+|+.+.........+....+
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~-----~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g 79 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP-----MIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQG 79 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH-----HHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTT
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH-----HHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhcC
Confidence 467764 2333445568899999999999998876541 1112225899999999999986433333445555567
Q ss_pred CeEEEecccCCCChHHHHHHHHHHHh
Q 027607 147 LQYYEISAKSNYNFEKPFLYLARKLA 172 (221)
Q Consensus 147 ~~~~~~s~~~~~gv~~~~~~l~~~l~ 172 (221)
.+++.+|+.++.|+.+++..+.+.+.
T Consensus 80 ~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 80 IRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp CCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred CcEEEEECCCcccHHHHHHHHHHHHH
Confidence 89999999999999999988777653
No 247
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.71 E-value=7.6e-09 Score=78.58 Aligned_cols=57 Identities=21% Similarity=0.162 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~ 74 (221)
++++++|.+|+|||||+|++..... ....++.|++.....+.... .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA-SSVGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc-cccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 6999999999999999999775443 33455666666554444332 578999999653
No 248
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.70 E-value=3e-08 Score=78.09 Aligned_cols=48 Identities=23% Similarity=0.289 Sum_probs=42.5
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-+|-+.....|++++..+|++.++|||.++ +|+.......+.++++.+
T Consensus 128 LSgGq~QRvalAraL~~~P~lLLLDEP~s~-----LD~~~~~~l~~~l~~l~~ 175 (348)
T 3d31_A 128 LSGGEQQRVALARALVTNPKILLLDEPLSA-----LDPRTQENAREMLSVLHK 175 (348)
T ss_dssp SCHHHHHHHHHHHHTTSCCSEEEEESSSTT-----SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHHHH
Confidence 345566678899999999999999999999 999999999999998854
No 249
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.70 E-value=2.8e-08 Score=74.83 Aligned_cols=50 Identities=22% Similarity=0.139 Sum_probs=43.1
Q ss_pred CCChHHHHHHHHHHHhCCCC-------CccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 157 NYNFEKPFLYLARKLAGDPN-------LHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~-------~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
-.|-+.....|++++..+|+ +.++|||+++ +|+.....+.+.++++.+++
T Consensus 127 LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~g 183 (249)
T 2qi9_C 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS-----LDVAQQSALDKILSALSQQG 183 (249)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTT-----CCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCccc-----CCHHHHHHHHHHHHHHHhCC
Confidence 34556666789999999999 9999999999 99999999999999886544
No 250
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.70 E-value=5.4e-08 Score=73.24 Aligned_cols=48 Identities=13% Similarity=0.211 Sum_probs=42.7
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-.|-+.....|+++++.+|++.++|||+++ +|+.....+.+.++++..
T Consensus 146 LSgGq~qRv~iAraL~~~p~lllLDEPts~-----LD~~~~~~i~~~l~~~~~ 193 (247)
T 2ff7_A 146 LSGGQRQRIAIARALVNNPKILIFDEATSA-----LDYESEHVIMRNMHKICK 193 (247)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEECCCCSC-----CCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHcC
Confidence 345567778899999999999999999999 999999999999998853
No 251
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.69 E-value=8e-09 Score=77.95 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=41.5
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++..++
T Consensus 145 SgGqkQrv~iAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~g 193 (250)
T 2d2e_A 145 SGGEKKRNEILQLLVLEPTYAVLDETDSG-----LDIDALKVVARGVNAMRGPN 193 (250)
T ss_dssp ---HHHHHHHHHHHHHCCSEEEEECGGGT-----TCHHHHHHHHHHHHHHCSTT
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHhcC
Confidence 34556667899999999999999999999 99999999999999986554
No 252
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.68 E-value=4.4e-08 Score=74.60 Aligned_cols=50 Identities=12% Similarity=0.063 Sum_probs=43.9
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
-.|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++++++
T Consensus 165 LSgGq~QRv~iAraL~~~p~lLlLDEPts~-----LD~~~~~~l~~~l~~l~~~g 214 (267)
T 2zu0_C 165 FSGGEKKRNDILQMAVLEPELCILDESDSG-----LDIDALKVVADGVNSLRDGK 214 (267)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTT-----CCHHHHHHHHHHHHTTCCSS
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHhcC
Confidence 345566678899999999999999999999 99999999999999886554
No 253
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.61 E-value=2.7e-07 Score=70.34 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=43.1
Q ss_pred CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+-.|-+.....|+++++.+|++.++|||+++ +|+.....+.+.++++..
T Consensus 156 ~LSgGq~QRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~i~~~l~~~~~ 204 (271)
T 2ixe_A 156 QLSGGQRQAVALARALIRKPRLLILDNATSA-----LDAGNQLRVQRLLYESPE 204 (271)
T ss_dssp TSCHHHHHHHHHHHHHTTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccC-----CCHHHHHHHHHHHHHHHh
Confidence 3445566678899999999999999999999 999999999999998864
No 254
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.60 E-value=5.3e-08 Score=77.58 Aligned_cols=110 Identities=19% Similarity=0.208 Sum_probs=77.7
Q ss_pred CccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH-HHH----HHHhhc
Q 027607 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQV----TFHRKK 145 (221)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~----~~~~~~ 145 (221)
.++.++.....++..++++++|+|+++..+ .|...+.....+.|+++|+||+|+.+..... ... ..+...
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~ 131 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEEL 131 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHc
Confidence 366788887888889999999999998763 2333333334589999999999997543321 111 234455
Q ss_pred CC---eEEEecccCCCChHHHHHHHHHHHhCCCCCccccCCCCC
Q 027607 146 NL---QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALA 186 (221)
Q Consensus 146 ~~---~~~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~ 186 (221)
+. .++.+||++|.|++++++.|.+.. ....+.+.-.|..+
T Consensus 132 g~~~~~v~~iSA~~g~gi~~L~~~I~~~~-~~~~i~~vG~~nvG 174 (369)
T 3ec1_A 132 GLCPVDVCLVSAAKGIGMAKVMEAINRYR-EGGDVYVVGCTNVG 174 (369)
T ss_dssp TCCCSEEEECBTTTTBTHHHHHHHHHHHH-TTSCEEEECCTTSS
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHhhc-ccCcEEEEcCCCCc
Confidence 65 689999999999999999987754 45556666666655
No 255
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.55 E-value=7.6e-08 Score=80.22 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=41.9
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+|-+.....|++++..+|+++++|||+++ +|+..+..+.+.++++..
T Consensus 140 SgGe~Qrv~iA~aL~~~p~illlDEPts~-----LD~~~~~~l~~~l~~l~~ 186 (538)
T 3ozx_A 140 SGGGLQRLLVAASLLREADVYIFDQPSSY-----LDVRERMNMAKAIRELLK 186 (538)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHhC
Confidence 45566667899999999999999999999 999999999999998864
No 256
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.54 E-value=1.6e-07 Score=70.16 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=39.1
Q ss_pred CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHH
Q 027607 156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELA 205 (221)
Q Consensus 156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~ 205 (221)
+-.|-+.....|++++..+|++.++|||+++ +|+.....+.+.+.
T Consensus 127 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~i~~~l~ 171 (237)
T 2cbz_A 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSA-----VDAHVGKHIFENVI 171 (237)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEESTTTT-----SCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCcccc-----cCHHHHHHHHHHHH
Confidence 3345566678899999999999999999999 99999999988884
No 257
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.51 E-value=5.6e-07 Score=66.92 Aligned_cols=43 Identities=19% Similarity=0.192 Sum_probs=37.3
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHH
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAEL 204 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~ 204 (221)
-.|-+.....|++++..+|++.++|||+++ +|+.....+.+.+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~-----LD~~~~~~i~~~l 173 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGY-----LDVLTEKEIFESC 173 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTT-----SCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccC-----CCHHHHHHHHHHH
Confidence 345566678899999999999999999999 9999999888763
No 258
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.50 E-value=3.6e-07 Score=73.94 Aligned_cols=141 Identities=18% Similarity=0.109 Sum_probs=76.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc-----CccCC-----ccc-----------CCcceeeeeeEEE-------------e
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLT-----GEFEK-----KYE-----------PTIGVEVHPLDFF-------------T 57 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~-----~~~~~-----~~~-----------~~~~~~~~~~~~~-------------~ 57 (221)
+...|+++|++||||||++..|.. +.-.. .+. ...+...+..... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 457899999999999999988653 11100 000 0011111110000 0
Q ss_pred cCcEEEEEEEecCCcccccc-ccc-----cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607 58 NCGKIRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (221)
Q Consensus 58 ~~~~~~i~~~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 131 (221)
...+..+.++||+|...... ... ......|.+++|+|+..... .......+... -.+..+|+||.|...
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~---a~~~a~~f~~~--~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ---AYNQALAFKEA--TPIGSIIVTKLDGSA 253 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHHS--CTTEEEEEECCSSCS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh---HHHHHHHHHhh--CCCeEEEEECCCCcc
Confidence 00226788999999533211 100 11235789999999986532 22222333322 345678999999764
Q ss_pred ccccHHHHHHHhhcCCeEEEecccCCCChH
Q 027607 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~ 161 (221)
+. ..........+.++..++. |++++
T Consensus 254 ~g--G~~ls~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 254 KG--GGALSAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp SH--HHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred cc--cHHHHHHHHHCCCEEEEEc--CCChH
Confidence 32 2233444556777766664 66663
No 259
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.50 E-value=1.2e-07 Score=71.10 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=41.9
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhh
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
-.|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++.
T Consensus 140 LSgGq~qrv~lAral~~~p~lllLDEPts~-----LD~~~~~~i~~~l~~~~ 186 (243)
T 1mv5_A 140 ISGGQRQRLAIARAFLRNPKILMLDEATAS-----LDSESESMVQKALDSLM 186 (243)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCSCS-----SCSSSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccc-----CCHHHHHHHHHHHHHhc
Confidence 345566778899999999999999999999 99999999999999886
No 260
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.48 E-value=5e-07 Score=76.23 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=42.1
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.|-++....|++++..+|++.++|||+++ +|+...+.+.+.++++.+
T Consensus 482 SgGq~qr~~iAral~~~p~illlDEpts~-----LD~~~~~~i~~~l~~~~~ 528 (582)
T 3b5x_A 482 SGGQRQRVAIARALLRDAPVLILDEATSA-----LDTESERAIQAALDELQK 528 (582)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHHcC
Confidence 45567778899999999999999999999 999999999999988754
No 261
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.45 E-value=3e-07 Score=69.66 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=42.5
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-.|-+.....|+++++.+|++.++|||+++ +|+.....+.+.++++..
T Consensus 156 LSgGqkqRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~i~~~l~~l~~ 203 (260)
T 2ghi_A 156 LSGGERQRIAIARCLLKDPKIVIFDEATSS-----LDSKTEYLFQKAVEDLRK 203 (260)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCCT-----TCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHhcC
Confidence 345566778899999999999999999999 999999999999998854
No 262
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.45 E-value=3.6e-07 Score=77.24 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=41.0
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhh
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
+|-+.....|++++..+|+++++|||+++ +|+..+..+.+.+++++
T Consensus 473 SGGe~QRv~iAraL~~~p~lLlLDEPt~~-----LD~~~~~~l~~~l~~l~ 518 (607)
T 3bk7_A 473 SGGELQRVAIAATLLRDADIYLLDEPSAY-----LDVEQRLAVSRAIRHLM 518 (607)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEECTTTT-----CCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHH
Confidence 34555567799999999999999999999 99999999999999875
No 263
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.44 E-value=4.4e-07 Score=75.65 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=41.5
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+|-+.....|++++..+|+++++|||+.+ +|+.....+.+.+++++.
T Consensus 387 SGGq~QRv~iAraL~~~p~lLlLDEPT~g-----LD~~~~~~i~~~l~~l~~ 433 (538)
T 3ozx_A 387 SGGELQKLYIAATLAKEADLYVLDQPSSY-----LDVEERYIVAKAIKRVTR 433 (538)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHH
Confidence 35555567799999999999999999999 999999999999998864
No 264
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.41 E-value=2.1e-07 Score=75.23 Aligned_cols=91 Identities=12% Similarity=0.031 Sum_probs=53.6
Q ss_pred EEEEEEEecCCccc--ccc-cc---ccc--cccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc
Q 027607 61 KIRFYCWDTAGQEK--FGG-LR---DGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (221)
Q Consensus 61 ~~~i~~~D~~g~~~--~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 132 (221)
...+.++||||... ... .. ... ....+.+++|+|+...... ......+... -.+..+|+||.|...+
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~--~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQA--SPIGSVIITKMDGTAK 253 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHH--CSSEEEEEECGGGCSC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhcc--cCCcEEEEeccccccc
Confidence 45678999999533 111 11 111 1245899999999865322 2233333332 3567899999997632
Q ss_pred cccHHHHHHHhhcCCeEEEecccCCCCh
Q 027607 133 QVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (221)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~s~~~~~gv 160 (221)
...........+.++..++. |+++
T Consensus 254 --~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 254 --GGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp --HHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred --chHHHHHHHHHCCCEEEEEC--CCCh
Confidence 22344555566788777765 6655
No 265
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.40 E-value=1e-07 Score=77.25 Aligned_cols=84 Identities=17% Similarity=0.048 Sum_probs=47.6
Q ss_pred EEEEEEEecCCcccccc-cc-----ccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCC-C-EEEEEeCCCcCCc
Q 027607 61 KIRFYCWDTAGQEKFGG-LR-----DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-P-IVLCGNKVDVKNR 132 (221)
Q Consensus 61 ~~~i~~~D~~g~~~~~~-~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-p-~ivv~nK~D~~~~ 132 (221)
...+.++||||...... +. ...+..+|.+++|+|+.... +...... ...... | ..+|+||.|...+
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~---~~~~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAK---AFKEAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHH---HHHTTSCSCEEEEEECSSSCST
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHH---HHhhcccCCeEEEEeCCCCccc
Confidence 45789999999643211 10 11123689999999987653 2222222 222345 6 8899999997532
Q ss_pred cccHHHHHHHhhcCCeEEEe
Q 027607 133 QVKAKQVTFHRKKNLQYYEI 152 (221)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~ 152 (221)
. ..........+.++..+
T Consensus 254 ~--g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 254 G--GGALSAVAETKAPIKFI 271 (432)
T ss_dssp T--HHHHHHHHHSSCCEEEE
T ss_pred h--HHHHHHHHHHCCCEEEe
Confidence 2 22334455556665554
No 266
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.39 E-value=7.5e-08 Score=81.25 Aligned_cols=46 Identities=9% Similarity=0.039 Sum_probs=40.6
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhh
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
+|-+.....|++++..+|+++++|||+.+ +|+.....+.+.+++++
T Consensus 469 SGGqkQRv~iAraL~~~p~lLlLDEPT~g-----LD~~~~~~i~~ll~~l~ 514 (608)
T 3j16_B 469 SGGELQRVAIVLALGIPADIYLIDEPSAY-----LDSEQRIICSKVIRRFI 514 (608)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEECCTTTT-----CCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHH
Confidence 35555567799999999999999999999 99999999999998875
No 267
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.38 E-value=5.1e-07 Score=75.68 Aligned_cols=65 Identities=17% Similarity=0.040 Sum_probs=39.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCC-cceeeeeeEE--Ee-cCcEEEEEEEecCCccc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT-IGVEVHPLDF--FT-NCGKIRFYCWDTAGQEK 74 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~-~~~~~~~~~~--~~-~~~~~~i~~~D~~g~~~ 74 (221)
..+.++|+|+|.+|||||||+|+|++....-....+ .+.+...... .+ ......+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 456789999999999999999997765421111211 1222222111 11 12345789999999653
No 268
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.7e-06 Score=73.14 Aligned_cols=52 Identities=6% Similarity=0.046 Sum_probs=45.2
Q ss_pred CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCC
Q 027607 156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL 212 (221)
Q Consensus 156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (221)
+-+|-+.....|++++..+|+++++|||+++ +|+.....+.+.++++.+++.
T Consensus 221 ~LSgGe~Qrv~iAraL~~~p~llllDEPts~-----LD~~~~~~l~~~l~~l~~~g~ 272 (608)
T 3j16_B 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSY-----LDVKQRLNAAQIIRSLLAPTK 272 (608)
T ss_dssp TCCHHHHHHHHHHHHHHSCCSEEEEECTTTT-----CCHHHHHHHHHHHHGGGTTTC
T ss_pred HCCHHHHHHHHHHHHHHhCCCEEEEECcccC-----CCHHHHHHHHHHHHHHHhCCC
Confidence 3345566678899999999999999999999 999999999999999987653
No 269
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.38 E-value=7.5e-07 Score=75.18 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=42.9
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-.|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++.+
T Consensus 481 LSgGq~qrl~iAral~~~p~illlDEpts~-----LD~~~~~~i~~~l~~~~~ 528 (582)
T 3b60_A 481 LSGGQRQRIAIARALLRDSPILILDEATSA-----LDTESERAIQAALDELQK 528 (582)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEETTTSS-----CCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECcccc-----CCHHHHHHHHHHHHHHhC
Confidence 345677778899999999999999999999 999999999999998764
No 270
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.38 E-value=1.8e-07 Score=78.93 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=43.2
Q ss_pred CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
+-.|-++....|++++..+|++.++|||+++ +|+...+.+.+.++++..
T Consensus 479 ~LSgGqrQrv~lARal~~~p~illlDEpts~-----LD~~~~~~i~~~l~~~~~ 527 (587)
T 3qf4_A 479 NFSGGQKQRLSIARALVKKPKVLILDDCTSS-----VDPITEKRILDGLKRYTK 527 (587)
T ss_dssp SSCHHHHHHHHHHHHHHTCCSEEEEESCCTT-----SCHHHHHHHHHHHHHHST
T ss_pred CcCHHHHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHHHHHHHHHHhCC
Confidence 3346677788999999999999999999999 999999999999988753
No 271
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.37 E-value=8.7e-07 Score=74.71 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=42.5
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-.|-++....|++++..+|++.++|||+++ +|+.....+.+.++++..
T Consensus 478 LSgGq~Qrv~lAral~~~p~illlDEpts~-----LD~~~~~~i~~~l~~~~~ 525 (578)
T 4a82_A 478 LSGGQKQRLSIARIFLNNPPILILDEATSA-----LDLESESIIQEALDVLSK 525 (578)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHHcC
Confidence 346677788999999999999999999999 999999999998887754
No 272
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.34 E-value=1.8e-06 Score=72.01 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=40.7
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhh
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
+|-+.....|++++..+|++.++|||+.+ +|...+..+.+.+++++
T Consensus 403 SGGe~qrv~lAraL~~~p~lLlLDEPt~~-----LD~~~~~~i~~~l~~l~ 448 (538)
T 1yqt_A 403 SGGELQRVAIAATLLRDADIYLLDEPSAY-----LDVEQRLAVSRAIRHLM 448 (538)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEECTTTT-----CCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHH
Confidence 34455557799999999999999999999 99999999999999875
No 273
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.34 E-value=1.8e-07 Score=66.38 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=37.5
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchH----------------HHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLA----------------AQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~ 211 (221)
.+.+..+..|++++..+|++.++|||..+ +++. ....+.+.++++.+++
T Consensus 85 s~g~~qrv~iAral~~~p~~lllDEPt~~-----Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g 149 (171)
T 4gp7_A 85 ESARKPLIEMAKDYHCFPVAVVFNLPEKV-----CQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREG 149 (171)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECCCHHH-----HHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHT
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEeCCHHH-----HHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcC
Confidence 45567778899999999999999999998 8887 4456666655554443
No 274
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.33 E-value=4e-07 Score=75.99 Aligned_cols=49 Identities=12% Similarity=0.170 Sum_probs=43.2
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
.|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++.+++
T Consensus 160 SgGekQRv~iAraL~~~P~lLlLDEPTs~-----LD~~~~~~l~~~L~~l~~~g 208 (538)
T 1yqt_A 160 SGGELQRVAIAAALLRNATFYFFDEPSSY-----LDIRQRLNAARAIRRLSEEG 208 (538)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHhcC
Confidence 45566678899999999999999999999 99999999999999886543
No 275
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.32 E-value=1.4e-06 Score=73.73 Aligned_cols=48 Identities=10% Similarity=0.227 Sum_probs=42.9
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-.|-+.....|++++..+|++.++|||+++ +|+.....+.+.++++..
T Consensus 492 LSgGq~Qrv~iAral~~~p~illlDEpts~-----LD~~~~~~i~~~l~~~~~ 539 (598)
T 3qf4_B 492 LSQGQRQLLAITRAFLANPKILILDEATSN-----VDTKTEKSIQAAMWKLME 539 (598)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEECCCCTT-----CCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccC-----CCHHHHHHHHHHHHHHcC
Confidence 346677778899999999999999999999 999999999999988764
No 276
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.32 E-value=8e-07 Score=81.48 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=41.6
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.|-++..-.|+|++++++++.++|||++. +|.+..+.+.+.++++..
T Consensus 1219 SgGQrQriaiARAllr~~~ILiLDEaTSa-----LD~~tE~~Iq~~l~~~~~ 1265 (1321)
T 4f4c_A 1219 SGGQKQRIAIARALVRNPKILLLDEATSA-----LDTESEKVVQEALDRARE 1265 (1321)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCS-----TTSHHHHHHHHHHTTTSS
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCcccc-----CCHHHHHHHHHHHHHHcC
Confidence 35577788999999999999999999999 999999999998887654
No 277
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.32 E-value=3.2e-06 Score=64.98 Aligned_cols=43 Identities=19% Similarity=0.192 Sum_probs=37.1
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHH
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAEL 204 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~ 204 (221)
-.|-+.....|++++..+|++.++|||+++ +|+.....+.+.+
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~i~~~l 202 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGY-----LDVLTEKEIFESC 202 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTT-----CCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCccc-----CCHHHHHHHHHHH
Confidence 345566667899999999999999999999 9999999888763
No 278
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.31 E-value=1.4e-06 Score=73.64 Aligned_cols=48 Identities=17% Similarity=0.202 Sum_probs=42.8
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-.|-+.....|++++..+|++.++|||+++ +|+...+.+.+.++++..
T Consensus 484 LSgGq~qrv~iAral~~~p~illlDEpts~-----LD~~~~~~i~~~l~~~~~ 531 (595)
T 2yl4_A 484 LSGGQKQRIAIARALLKNPKILLLDEATSA-----LDAENEYLVQEALDRLMD 531 (595)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCSS-----CCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcccC-----CCHHHHHHHHHHHHHHhc
Confidence 345577778899999999999999999999 999999999999998765
No 279
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.29 E-value=5e-07 Score=76.36 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=43.0
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
+|-+.....|++++..+|+++++|||+++ +|+.....+.+.++++.+++
T Consensus 230 SGGekQRvaIAraL~~~P~lLlLDEPTs~-----LD~~~~~~l~~~L~~l~~~g 278 (607)
T 3bk7_A 230 SGGELQRVAIAAALLRKAHFYFFDEPSSY-----LDIRQRLKVARVIRRLANEG 278 (607)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEECTTTT-----CCHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHhcC
Confidence 45566667899999999999999999999 99999999999999886543
No 280
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.27 E-value=1.8e-07 Score=74.81 Aligned_cols=48 Identities=19% Similarity=0.238 Sum_probs=42.2
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-+|-+.....|++++..+|++.++|||.++ +|+.......+.++++..
T Consensus 156 LSGGqrQRvalARAL~~~P~lLLLDEPts~-----LD~~~~~~l~~~l~~~~~ 203 (390)
T 3gd7_A 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAH-----LDPVTYQIIRRTLKQAFA 203 (390)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEESHHHH-----SCHHHHHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHhC
Confidence 356677778899999999999999999999 999999999999987643
No 281
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.26 E-value=4.6e-07 Score=83.01 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=42.3
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-.|-++..-.|+|+++.+++++++|||+++ +|...+..+.+.+.++..
T Consensus 555 LSGGQkQRiaiARAl~~~~~IliLDE~tSa-----LD~~te~~i~~~l~~~~~ 602 (1321)
T 4f4c_A 555 LSGGQKQRIAIARALVRNPKILLLDEATSA-----LDAESEGIVQQALDKAAK 602 (1321)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCTTTHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHccCCCEEEEeccccc-----CCHHHHHHHHHHHHHHhC
Confidence 346688889999999999999999999999 999988888888887754
No 282
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.24 E-value=6.8e-07 Score=67.79 Aligned_cols=93 Identities=13% Similarity=0.027 Sum_probs=61.8
Q ss_pred cCCccc-cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC
Q 027607 69 TAGQEK-FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 147 (221)
Q Consensus 69 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 147 (221)
.||+.. ........+.++|+++.|+|+.++.+..+.. +. + . ++|.++|+||+|+.+.........+....+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~ 76 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S-RKETIILLNKVDIADEKTTKKWVEFFKKQGK 76 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c-CCCcEEEEECccCCCHHHHHHHHHHHHHcCC
Confidence 355432 2223455678999999999999987665321 01 1 1 7899999999999865433344445555677
Q ss_pred eEEEecccCCCChHHHHHHHHH
Q 027607 148 QYYEISAKSNYNFEKPFLYLAR 169 (221)
Q Consensus 148 ~~~~~s~~~~~gv~~~~~~l~~ 169 (221)
++ .+|+.++.|+++++..+..
T Consensus 77 ~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 77 RV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp CE-EECCTTSCHHHHHHHHCCC
T ss_pred eE-EEECCCCcCHHHHHHHHHH
Confidence 88 9999999999988766543
No 283
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.23 E-value=1.9e-06 Score=72.97 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
.|+|+|++|||||||++.+.+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHS
T ss_pred eEEEECCCCChHHHHHHHHhC
Confidence 499999999999999998654
No 284
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.18 E-value=6.7e-07 Score=69.96 Aligned_cols=90 Identities=13% Similarity=0.059 Sum_probs=50.1
Q ss_pred EEEEEecCCcccccccc-ccc-----cccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH
Q 027607 63 RFYCWDTAGQEKFGGLR-DGY-----YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA 136 (221)
Q Consensus 63 ~i~~~D~~g~~~~~~~~-~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 136 (221)
.+.++|++|........ ... .-..|-.+++.|+.... ++......+... .....+++||.|.... ..
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~--~~it~iilTKlD~~a~--~G 285 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA--VKIDGIILTKLDADAR--GG 285 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH--SCCCEEEEECGGGCSC--CH
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh--cCCCEEEEeCcCCccc--hh
Confidence 45678999964322211 110 12367888999976552 222333333322 2344788899996322 33
Q ss_pred HHHHHHhhcCCeEEEecccCCCChH
Q 027607 137 KQVTFHRKKNLQYYEISAKSNYNFE 161 (221)
Q Consensus 137 ~~~~~~~~~~~~~~~~s~~~~~gv~ 161 (221)
.........+.++..++ +|++++
T Consensus 286 ~~l~~~~~~~~pi~~i~--~Ge~v~ 308 (328)
T 3e70_C 286 AALSISYVIDAPILFVG--VGQGYD 308 (328)
T ss_dssp HHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred HHHHHHHHHCCCEEEEe--CCCCcc
Confidence 34556666677777766 566663
No 285
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.17 E-value=2.5e-06 Score=73.25 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=44.4
Q ss_pred CCCChHHHHHHHHHHHhCCCC--CccccCCCCCCCccccchHHHHHHHHHHHHhhCCCC
Q 027607 156 SNYNFEKPFLYLARKLAGDPN--LHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL 212 (221)
Q Consensus 156 ~~~gv~~~~~~l~~~l~~~~~--~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (221)
+-+|-+.....|++++..+|+ ++++|||+++ +|+.....+.+.+++++.++.
T Consensus 202 ~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsg-----LD~~~~~~l~~~l~~l~~~g~ 255 (670)
T 3ux8_A 202 TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIG-----LHQRDNDRLIATLKSMRDLGN 255 (670)
T ss_dssp GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTT-----CCGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccC-----CCHHHHHHHHHHHHHHHHcCC
Confidence 334566667889999999988 9999999999 999999999999998876543
No 286
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.16 E-value=2.9e-06 Score=65.47 Aligned_cols=92 Identities=12% Similarity=0.069 Sum_probs=53.9
Q ss_pred EEEEEEEecCCccc--cc-cccc-----cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCC
Q 027607 61 KIRFYCWDTAGQEK--FG-GLRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN 131 (221)
Q Consensus 61 ~~~i~~~D~~g~~~--~~-~~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 131 (221)
.+.+.++||||... .. .+.. .....+|.+++|+|+... .+.......+.. ..+ ..+|+||.|...
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~---~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ---ASKIGTIIITKMDGTA 253 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH---TCTTEEEEEECGGGCT
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh---hCCCCEEEEeCCCCCc
Confidence 45689999999755 21 1111 123468999999998643 222222222222 456 778999999753
Q ss_pred ccccHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (221)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~ 162 (221)
+ ...........+.++..++ .|+++++
T Consensus 254 ~--~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 K--GGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp T--HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred c--hHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 2 2233455666677776665 4666643
No 287
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.15 E-value=2.1e-06 Score=66.42 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=56.3
Q ss_pred ccccccccccccEEEEEEECCChhhh-ccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc----cHHHHHHHhhcCCeEE
Q 027607 76 GGLRDGYYIHGQCAIIMFDVTARLTY-KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYY 150 (221)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~ 150 (221)
+.+.+..+.++|.+++|+|+.++..- ..+..++.... ..++|.++|+||+|+.+... ...........+.+++
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~--~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE--ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH--TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH--HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 34445568899999999999877533 23333332222 24889999999999976533 2334455556678888
Q ss_pred EecccCCCChH
Q 027607 151 EISAKSNYNFE 161 (221)
Q Consensus 151 ~~s~~~~~gv~ 161 (221)
.+|+.++.|++
T Consensus 155 ~~sa~~~~g~~ 165 (307)
T 1t9h_A 155 LTSSKDQDSLA 165 (307)
T ss_dssp ECCHHHHTTCT
T ss_pred EEecCCCCCHH
Confidence 88887776653
No 288
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.07 E-value=1e-05 Score=74.11 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=41.8
Q ss_pred CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
-.|-++....|+++++.+|++.++|||+++ +|....+.+.+.++.+..
T Consensus 527 LSgGq~QriaiARal~~~p~iliLDEpts~-----LD~~~~~~i~~~l~~~~~ 574 (1284)
T 3g5u_A 527 LSGGQKQRIAIARALVRNPKILLLDEATSA-----LDTESEAVVQAALDKARE 574 (1284)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTCS-----SCHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHcC
Confidence 346678888999999999999999999999 999998888888876654
No 289
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.03 E-value=1.7e-05 Score=72.62 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=41.5
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.|-++....|++++..+|++.++|||+++ +|....+.+.+.++++..
T Consensus 1173 SgGq~Qrv~iARal~~~p~iLiLDEpTs~-----lD~~~~~~i~~~l~~~~~ 1219 (1284)
T 3g5u_A 1173 SGGQKQRIAIARALVRQPHILLLDEATSA-----LDTESEKVVQEALDKARE 1219 (1284)
T ss_dssp CHHHHHHHHHHHHHHHCCSSEEEESCSSS-----CCHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHhCC
Confidence 45577778899999999999999999999 999999999999987643
No 290
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.01 E-value=1.6e-07 Score=77.27 Aligned_cols=103 Identities=17% Similarity=-0.015 Sum_probs=55.8
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcc--cccccc--------
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--KFGGLR-------- 79 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~--~~~~~~-------- 79 (221)
....++|+++|.+||||||+.++|....... ..++.+...........+......+||..|.+ +.+..+
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~ 114 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV 114 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999966432211 11111111000000011111234577888862 222222
Q ss_pred ccccccccEEEEEEECCChhhhccHHHHHHHHHhh
Q 027607 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 114 (221)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 114 (221)
..++....+.++|+|+++. .......|+..+...
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 3455567888999999987 444455565555443
No 291
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.96 E-value=2e-05 Score=69.62 Aligned_cols=44 Identities=18% Similarity=0.111 Sum_probs=39.9
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHH
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAA 206 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~ 206 (221)
+|-+.....|++++..+|++.++|||+++ +|+.....+.+.+++
T Consensus 550 SGGqkQRvaLArAL~~~P~lLLLDEPTs~-----LD~~~~~~l~~~L~~ 593 (986)
T 2iw3_A 550 SGGWKMKLALARAVLRNADILLLDEPTNH-----LDTVNVAWLVNYLNT 593 (986)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEESTTTT-----CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccC-----CCHHHHHHHHHHHHh
Confidence 45666678899999999999999999999 999999999999987
No 292
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.94 E-value=0.00042 Score=55.03 Aligned_cols=51 Identities=10% Similarity=0.170 Sum_probs=42.4
Q ss_pred CCCChHHHHHHHHHHHh------CCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607 156 SNYNFEKPFLYLARKLA------GDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211 (221)
Q Consensus 156 ~~~gv~~~~~~l~~~l~------~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (221)
+-+|-+.....|++++. .+|+++++|||+++ +|+.....+.+.++++..++
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~-----LD~~~~~~~~~~l~~l~~~g 335 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSS-----LDTENKEKIASVLKELERLN 335 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTT-----SCHHHHHHHHHHHHGGGGSS
T ss_pred hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHhCC
Confidence 34455666677888887 79999999999999 99999999999999887654
No 293
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.90 E-value=5.9e-06 Score=58.89 Aligned_cols=43 Identities=5% Similarity=0.029 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHH-----HhCCCCCccccC--CCCCCCccccchHHHHHHHHHHHH
Q 027607 159 NFEKPFLYLARK-----LAGDPNLHFVES--PALAPPEVQIDLAAQQQHEAELAA 206 (221)
Q Consensus 159 gv~~~~~~l~~~-----l~~~~~~~~~~e--p~~~~~~~~~~~~~~~~~~~~~~~ 206 (221)
|.+.....|+++ +..+|++.++|| |... +++.....+.+.+++
T Consensus 79 gG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~-----ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 79 YFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL-----FSKKFRDLVRQIMHD 128 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG-----GCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhccccccccCCCEEEEeCCCCccc-----CCHHHHHHHHHHHhc
Confidence 445555667775 788888888898 8887 887777777776654
No 294
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.88 E-value=6.3e-05 Score=59.32 Aligned_cols=81 Identities=9% Similarity=0.030 Sum_probs=53.4
Q ss_pred ccccccEEEEEEECCChhh-hccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc---cHHHHHHHhhcCCeEEEecccCC
Q 027607 82 YYIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNLQYYEISAKSN 157 (221)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~ 157 (221)
...++|.+++|... ++.. ...+..++..... .++|.++|+||+|+.+... ..+........+++++.+|+.++
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~--~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET--LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH--HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 46789999987554 4432 2223333332222 3788899999999976543 12233445567889999999999
Q ss_pred CChHHHHH
Q 027607 158 YNFEKPFL 165 (221)
Q Consensus 158 ~gv~~~~~ 165 (221)
.|++.+..
T Consensus 204 ~gl~~L~~ 211 (358)
T 2rcn_A 204 DGLKPLEE 211 (358)
T ss_dssp BTHHHHHH
T ss_pred cCHHHHHH
Confidence 99887654
No 295
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.77 E-value=4.5e-06 Score=59.83 Aligned_cols=21 Identities=43% Similarity=0.762 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 027607 16 LVIVGDGGTGKTTFVKRHLTG 36 (221)
Q Consensus 16 i~v~G~~gsGKStL~~~l~~~ 36 (221)
|+|+||+|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999997753
No 296
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.76 E-value=1.3e-05 Score=58.15 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
-.++|+|++|||||||++.++.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998653
No 297
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.74 E-value=1.5e-05 Score=56.76 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
-.++|+|++|||||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998664
No 298
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.72 E-value=1.5e-05 Score=57.11 Aligned_cols=21 Identities=43% Similarity=0.765 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
-++|+|++|||||||++.+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999998663
No 299
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.72 E-value=1.3e-05 Score=62.07 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
-.++|+|++|||||||+|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4799999999999999999653
No 300
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.72 E-value=3.1e-05 Score=61.09 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
-.++|+|++|||||||+|.|+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 3689999999999999999664
No 301
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.72 E-value=1.6e-05 Score=58.03 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027607 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~ 34 (221)
.++|+|++|||||||++.+.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~ 41 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLR 41 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999855
No 302
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.70 E-value=1.9e-05 Score=55.10 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
=.++++|++|||||||++.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998654
No 303
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.69 E-value=1.8e-05 Score=57.34 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
-.|+++|++|||||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 3589999999999999998653
No 304
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.69 E-value=8.9e-05 Score=60.21 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=23.0
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
+.+-.-|+|+|++++|||||+|+|+.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhh
Confidence 55677899999999999999999874
No 305
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.68 E-value=8.4e-06 Score=58.88 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
+.-.|+|+|++|||||||+++|+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 334689999999999999999764
No 306
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.67 E-value=2.1e-05 Score=57.97 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
--++|+|++|||||||++.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999998654
No 307
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.64 E-value=3.4e-05 Score=55.29 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
-.|+++|++|||||||++.+..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999998653
No 308
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.64 E-value=2.9e-05 Score=56.60 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
.+...|+|+|++|||||||++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999854
No 309
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.64 E-value=2.3e-05 Score=57.62 Aligned_cols=22 Identities=45% Similarity=0.812 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
-.++|+|++|||||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998653
No 310
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.61 E-value=0.00013 Score=56.30 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
-.++++|++|||||||+|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999976
No 311
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.56 E-value=0.0004 Score=56.36 Aligned_cols=65 Identities=17% Similarity=0.148 Sum_probs=37.8
Q ss_pred EEEEEEEecCCcccccc-ccc-----cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCC
Q 027607 61 KIRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN 131 (221)
Q Consensus 61 ~~~i~~~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 131 (221)
.+.+.++||||...... ... ..+...+.+++|+|+.... +.......+.. ..+ .-+|+||.|...
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---~~~~~~~~f~~---~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---DAANTAKAFNE---ALPLTGVVLTKVDGDA 254 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---THHHHHHHHHH---HSCCCCEEEECTTSSS
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---HHHHHHHHHhc---cCCCeEEEEecCCCCc
Confidence 45789999999643211 111 1133678899999987542 22222222322 344 347899999754
No 312
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.54 E-value=3.2e-05 Score=56.49 Aligned_cols=34 Identities=12% Similarity=0.045 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHh
Q 027607 165 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAA 207 (221)
Q Consensus 165 ~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~ 207 (221)
..|++++..+|++.++|||+++ ....+.+.++++
T Consensus 113 v~lAraL~~~p~lllLDEPts~---------~~~~l~~~l~~l 146 (208)
T 3b85_A 113 LAYMRGRTLNDAFVILDEAQNT---------TPAQMKMFLTRL 146 (208)
T ss_dssp GGGGTTCCBCSEEEEECSGGGC---------CHHHHHHHHTTB
T ss_pred HHHHHHHhcCCCEEEEeCCccc---------cHHHHHHHHHHh
Confidence 5689999999999999999987 555556666655
No 313
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.52 E-value=7.7e-05 Score=52.63 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~ 34 (221)
--.|+++|++||||||+.+.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 3579999999999999999854
No 314
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.51 E-value=4.4e-05 Score=54.87 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
+++++|++|||||||++.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999998553
No 315
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.50 E-value=5.6e-05 Score=55.09 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
+...|+|+|++|||||||++.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~ 27 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALA 27 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999754
No 316
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.48 E-value=7.2e-05 Score=54.53 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLTG 36 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~~ 36 (221)
---|+|+|++|||||||++.|...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999997643
No 317
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.48 E-value=6.7e-05 Score=56.13 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=21.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhc
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
-.+-..|+|+|++|||||||++.+..
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999998553
No 318
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.47 E-value=6e-05 Score=53.96 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027607 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~ 34 (221)
.++++|++|||||||++.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 57999999999999999865
No 319
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.47 E-value=6.9e-05 Score=56.08 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~ 34 (221)
.-.|+|+|++|||||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999855
No 320
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.45 E-value=6.5e-05 Score=56.82 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
=.++|+|++|||||||++.++
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHH
Confidence 469999999999999999865
No 321
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.44 E-value=6.6e-05 Score=56.03 Aligned_cols=20 Identities=40% Similarity=0.782 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027607 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~ 34 (221)
-++++|++|||||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 58899999999999999866
No 322
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.43 E-value=7.6e-05 Score=52.51 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
..|+++|++||||||+.+.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La 25 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLA 25 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999854
No 323
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.42 E-value=8.8e-05 Score=53.61 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~ 34 (221)
--.|+++|++||||||+.+.+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 3479999999999999999865
No 324
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.42 E-value=7.1e-05 Score=57.78 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
=.++|+|++|||||||++.++
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 468999999999999999855
No 325
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.40 E-value=8.5e-05 Score=53.75 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~ 34 (221)
--.|+|+|++|||||||++.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999854
No 326
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.39 E-value=9.8e-05 Score=53.47 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~ 36 (221)
..|+|+|++||||||+++.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999986543
No 327
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.38 E-value=5.1e-05 Score=56.19 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=14.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
-.|+|+|++|||||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999866
No 328
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.38 E-value=0.00013 Score=56.63 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
.+...|+|+|++|||||||++.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHH
Confidence 456789999999999999999854
No 329
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.37 E-value=9.6e-05 Score=53.63 Aligned_cols=22 Identities=41% Similarity=0.677 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
..|+|+|++|||||||++.|..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999654
No 330
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.35 E-value=8.9e-05 Score=52.62 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
-.++++|++|+|||||++.+..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998653
No 331
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.34 E-value=0.00012 Score=51.41 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 027607 14 FKLVIVGDGGTGKTTFVKRH 33 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l 33 (221)
..|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999986
No 332
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.32 E-value=0.0001 Score=54.23 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
-++|+|++|||||||++.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998664
No 333
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.31 E-value=0.00012 Score=52.92 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
.+|+|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998654
No 334
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.30 E-value=0.00015 Score=52.58 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
+.|+++|++||||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998653
No 335
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.30 E-value=0.00014 Score=51.04 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027607 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~ 34 (221)
.|+|+|++||||||+.+.|.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999865
No 336
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.29 E-value=0.00013 Score=56.32 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
-.++++|++|||||||+|.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHST
T ss_pred CeEEEECCCCCcHHHHHHHhcc
Confidence 4689999999999999998553
No 337
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.29 E-value=0.00012 Score=58.22 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~ 34 (221)
.-+++|+|++|||||||++.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~ 191 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLA 191 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999844
No 338
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.28 E-value=7.4e-05 Score=52.74 Aligned_cols=20 Identities=45% Similarity=0.718 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027607 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~ 34 (221)
.++|+|++|||||||++.++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999855
No 339
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.28 E-value=0.00017 Score=52.00 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
+...|+|+|++||||||+.+.|..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998654
No 340
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.28 E-value=0.00018 Score=55.96 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=21.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHh
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
....+-|+|+|++|||||||++.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3456889999999999999999854
No 341
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.27 E-value=0.00015 Score=53.31 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
.+|+++|++||||||+.+.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMA 26 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999854
No 342
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.27 E-value=0.00015 Score=51.26 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
..++|+|++|||||||+++++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999999764
No 343
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.26 E-value=0.00015 Score=52.47 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
..|+|+|++||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998653
No 344
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.25 E-value=0.00013 Score=57.62 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
=.|+|+|++|||||||++.++.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999998653
No 345
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.24 E-value=0.0002 Score=50.51 Aligned_cols=22 Identities=23% Similarity=0.538 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
..|+|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999664
No 346
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.24 E-value=0.00021 Score=51.66 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=20.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
.+--.|+|+|++|||||||.+.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999999854
No 347
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.23 E-value=0.00017 Score=52.61 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
++|+|+|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999864
No 348
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.21 E-value=0.00019 Score=52.43 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
++|+|+|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999864
No 349
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.21 E-value=0.00021 Score=51.00 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
..|+|.|++||||||+.+.|.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999865
No 350
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.19 E-value=0.00024 Score=53.40 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
+-..|+|+|++||||||+++.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999855
No 351
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.19 E-value=0.00019 Score=50.91 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
-.+|+|++|||||||++++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999653
No 352
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.18 E-value=0.00027 Score=50.28 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~ 34 (221)
-..|+++|++||||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999865
No 353
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.18 E-value=0.00024 Score=55.09 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
.+...|+|+|++|||||||++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~ 101 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 344789999999999999999854
No 354
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.17 E-value=0.00018 Score=56.29 Aligned_cols=20 Identities=35% Similarity=0.818 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027607 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~ 34 (221)
.++|+|++|||||||++.++
T Consensus 173 ~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999854
No 355
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.17 E-value=0.00025 Score=50.65 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~ 34 (221)
...|+|.|.+||||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999864
No 356
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.17 E-value=0.00028 Score=50.31 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
+..+|+++|++||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998653
No 357
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.16 E-value=0.00027 Score=51.27 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
+...|+|+|++|||||||++.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~ 42 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQ 42 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999855
No 358
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.16 E-value=0.0002 Score=55.32 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
+--.++++|++||||||+++.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 34579999999999999999855
No 359
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.15 E-value=0.00015 Score=49.97 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
-.++++|++|+|||||++.+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998653
No 360
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.15 E-value=0.00022 Score=55.12 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~ 34 (221)
--.|+++|++|||||||++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3579999999999999999855
No 361
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.15 E-value=0.0003 Score=50.78 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHh
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
......|+|+|++||||||+.+.|.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3445789999999999999999865
No 362
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.14 E-value=0.0002 Score=56.81 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
-.++|+|++|||||||++.++
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999855
No 363
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.14 E-value=0.00015 Score=52.48 Aligned_cols=84 Identities=7% Similarity=-0.046 Sum_probs=52.1
Q ss_pred EEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhh---cCCCCEEEEEeCCCcCCccccHHH
Q 027607 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQ 138 (221)
Q Consensus 62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~ 138 (221)
+.+.++|+|+.. .......+..+|.++++...+... .....+...+... ....++.+|+|+.+.... ...+.
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~-~~~~~ 150 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT-MLNVL 150 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE-EEHHH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch-HHHHH
Confidence 568899999854 233345567799999999876543 4555555555433 235677899999995432 23333
Q ss_pred HHHHhhcCCeEE
Q 027607 139 VTFHRKKNLQYY 150 (221)
Q Consensus 139 ~~~~~~~~~~~~ 150 (221)
.+.....+.+++
T Consensus 151 ~~~l~~~~~~vl 162 (206)
T 4dzz_A 151 KESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHTCCBC
T ss_pred HHHHHHcCCcee
Confidence 444444454433
No 364
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.14 E-value=0.00029 Score=52.13 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=20.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
.+-.-|+|.|++|||||||++.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~ 41 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFE 41 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTG
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 445689999999999999999744
No 365
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.14 E-value=0.00026 Score=51.05 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998553
No 366
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.14 E-value=0.00027 Score=51.81 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~ 34 (221)
-..|+|+|++||||||+.+.|.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999854
No 367
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.14 E-value=0.00031 Score=50.84 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
+...|+|+|++|||||||++.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLS 43 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44789999999999999999855
No 368
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.13 E-value=0.00032 Score=50.85 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~ 34 (221)
...|+|.|++||||||+.+.|.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLK 25 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 3689999999999999999855
No 369
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.12 E-value=0.00021 Score=57.64 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
=.|+|+|++|||||||++.++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999998663
No 370
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.12 E-value=0.00023 Score=56.60 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
.=.|+|+|++|||||||++.++.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999998653
No 371
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.12 E-value=0.00028 Score=50.31 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027607 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~ 34 (221)
.|+|.|++||||||+.+.|.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999855
No 372
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.12 E-value=0.00032 Score=49.46 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
..|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998653
No 373
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.12 E-value=0.00035 Score=53.66 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
.+...|+|.|++|||||||++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456889999999999999999744
No 374
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.11 E-value=0.00035 Score=52.21 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
+..+|+|+|++||||||+.+.|.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 55799999999999999999865
No 375
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.11 E-value=0.00029 Score=49.85 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~ 34 (221)
...|+++|++||||||+.+.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3579999999999999999855
No 376
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.11 E-value=0.00024 Score=54.14 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 027607 16 LVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 16 i~v~G~~gsGKStL~~~l~~ 35 (221)
++++|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999998653
No 377
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.11 E-value=0.00033 Score=50.04 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
..|+|+|++||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999865
No 378
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.10 E-value=0.0003 Score=50.02 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
..|+++|++||||||+.+.|.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999864
No 379
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.09 E-value=0.00031 Score=48.36 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
-.+|+|++|+|||||+.++..
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999653
No 380
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.07 E-value=0.00046 Score=49.15 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.2
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHh
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
..+...|+++|.+||||||+.+.+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 3455789999999999999999854
No 381
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.06 E-value=0.00028 Score=55.53 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTG 36 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~ 36 (221)
+++++|++|+|||||++.+.+.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999986643
No 382
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.00023 Score=58.22 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
-.++|+|++|||||||++.++
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~ 159 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLC 159 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999855
No 383
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.05 E-value=0.00028 Score=58.46 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
-.++|+|++|||||||+++++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 459999999999999999865
No 384
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.05 E-value=0.00035 Score=50.81 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
.+|+++|+|||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998653
No 385
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.05 E-value=0.00053 Score=49.49 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
+-..|+|.|++||||||+.+.|.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999865
No 386
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.05 E-value=0.0003 Score=49.56 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027607 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~ 34 (221)
+|+|+|++||||||+.+.|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 59999999999999999854
No 387
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.04 E-value=0.00031 Score=52.70 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
.++++|++|+|||||++.+..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998653
No 388
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.04 E-value=0.00033 Score=51.15 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998653
No 389
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.03 E-value=0.00043 Score=53.05 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
+..-|++.|++||||||+.+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999753
No 390
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.03 E-value=0.00042 Score=48.67 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
..++|+|++|||||||+.+++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999664
No 391
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.02 E-value=0.0005 Score=49.87 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~ 34 (221)
...|+|.|.+||||||+.+.|.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 4679999999999999999855
No 392
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.00 E-value=0.00034 Score=55.27 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
+--.|+++|++||||||+++.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHH
Confidence 34579999999999999999855
No 393
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.00 E-value=0.00037 Score=51.21 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
-++++|++|+|||||++.+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998663
No 394
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.99 E-value=0.00048 Score=49.68 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
..|+|.|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998654
No 395
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.99 E-value=0.0022 Score=52.02 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=41.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHhc------------------CccC---CcccCCcceeeeeeEE--Ee-cCcEEEEE
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHLT------------------GEFE---KKYEPTIGVEVHPLDF--FT-NCGKIRFY 65 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~~------------------~~~~---~~~~~~~~~~~~~~~~--~~-~~~~~~i~ 65 (221)
+.+-.-|+|+|+.++|||+|+|.++. ..|. .....|.|+-.....+ .. ++....+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 55777888999999999999996541 1221 1223344544332222 22 34567899
Q ss_pred EEecCCccc
Q 027607 66 CWDTAGQEK 74 (221)
Q Consensus 66 ~~D~~g~~~ 74 (221)
++||.|...
T Consensus 144 llDTEG~~d 152 (457)
T 4ido_A 144 LMDTQGTFD 152 (457)
T ss_dssp EEEECCBTC
T ss_pred EEeccCCCC
Confidence 999999543
No 396
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.98 E-value=0.00046 Score=49.40 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~ 34 (221)
...|+|+|++||||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999864
No 397
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.97 E-value=0.00047 Score=51.11 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
+.+.|+|.|++||||||+.+.+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999854
No 398
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.96 E-value=0.00049 Score=48.01 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998553
No 399
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.96 E-value=0.00038 Score=57.08 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
+--.|+|+|++|||||||++.|..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 445799999999999999998653
No 400
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.95 E-value=0.00045 Score=50.93 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
..|+|+|++||||||+.+.|.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999865
No 401
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.95 E-value=0.00044 Score=51.98 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
.|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998653
No 402
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.93 E-value=0.00068 Score=49.35 Aligned_cols=86 Identities=10% Similarity=-0.018 Sum_probs=51.5
Q ss_pred EEEEEEEecCCc-cccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH
Q 027607 61 KIRFYCWDTAGQ-EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV 139 (221)
Q Consensus 61 ~~~i~~~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 139 (221)
.+.+.++|+|+. .. ......+..+|.++++...+ ..+...+...+..+.... +.++.+|+|+.+........+..
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~~~~~~~~~~~ 142 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG-NNRFRILLTIIPPYPSKDGDEAR 142 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC-SSSEEEEECSBCCTTSCHHHHHH
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc-CCCEEEEEEecCCccchHHHHHH
Confidence 356889999885 32 22344567889999888865 344555555555554422 56788999999865411223333
Q ss_pred HHHhhcCCeEE
Q 027607 140 TFHRKKNLQYY 150 (221)
Q Consensus 140 ~~~~~~~~~~~ 150 (221)
+.....+.+++
T Consensus 143 ~~l~~~g~~v~ 153 (209)
T 3cwq_A 143 QLLTTAGLPLF 153 (209)
T ss_dssp HHHHHTTCCBC
T ss_pred HHHHHcCCchh
Confidence 33444555433
No 403
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.93 E-value=0.0006 Score=49.85 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~ 34 (221)
.+.|+|.|.+||||||+.+.|.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3789999999999999999864
No 404
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.93 E-value=0.00051 Score=50.53 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027607 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~ 34 (221)
.|+|.|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999864
No 405
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.93 E-value=0.00041 Score=56.87 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
=.++|+|++|||||||++.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4679999999999999998654
No 406
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.93 E-value=0.00033 Score=54.54 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~ 36 (221)
-.++|+|++|||||||++.++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 35789999999999999997743
No 407
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.93 E-value=0.0002 Score=52.15 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027607 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~ 34 (221)
.|+|.|++||||||+++.|.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999999854
No 408
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.92 E-value=0.00045 Score=52.59 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
.++++|++|+|||||++.+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHH
Confidence 399999999999999998653
No 409
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.91 E-value=0.00067 Score=47.95 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
+-..|+++|.+||||||+.+.|.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~ 26 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALE 26 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999854
No 410
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.91 E-value=0.00044 Score=54.15 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
.++++|++|+|||||++.+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999998653
No 411
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.90 E-value=0.00062 Score=51.04 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
.+.+.|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998543
No 412
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.90 E-value=0.00058 Score=49.62 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~ 34 (221)
...|+|.|.+||||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999855
No 413
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.90 E-value=0.00057 Score=48.77 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998653
No 414
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.89 E-value=0.00058 Score=48.91 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
-|++.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998553
No 415
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.87 E-value=0.00058 Score=48.97 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
..|+|+|++||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998653
No 416
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.85 E-value=0.0011 Score=50.50 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
.+.+.|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999855
No 417
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.85 E-value=0.0007 Score=47.89 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
-.+++.|++|+|||+|++.+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998654
No 418
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.85 E-value=0.00055 Score=50.20 Aligned_cols=22 Identities=32% Similarity=0.367 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998653
No 419
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.83 E-value=0.00057 Score=55.55 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
+++++|++|||||||++.+.+
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag 179 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMAR 179 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999998554
No 420
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.81 E-value=0.0006 Score=52.38 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
-++|+|++|+|||||++.+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 588999999999999998653
No 421
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.81 E-value=0.00069 Score=49.57 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
..|+|+|++||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999854
No 422
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.81 E-value=0.00071 Score=47.37 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027607 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~ 34 (221)
.|+|.|.+||||||+.+.|.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 59999999999999999854
No 423
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.79 E-value=0.00062 Score=51.12 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
+...|+++|++||||||+.+.+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34789999999999999999864
No 424
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.79 E-value=0.00079 Score=47.94 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
..|+|.|++||||||+.+.|.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999865
No 425
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.79 E-value=0.00072 Score=50.09 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
-++|+|++|+|||||+..+..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999765
No 426
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.79 E-value=0.00049 Score=48.71 Aligned_cols=21 Identities=29% Similarity=0.159 Sum_probs=15.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
..|+|.|.+||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999864
No 427
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.77 E-value=0.00076 Score=47.84 Aligned_cols=21 Identities=43% Similarity=0.582 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998653
No 428
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.77 E-value=0.00091 Score=49.47 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~ 34 (221)
...|+|+|++||||||+.+.|.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999854
No 429
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.77 E-value=0.00076 Score=49.15 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999765
No 430
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.76 E-value=0.00069 Score=50.80 Aligned_cols=21 Identities=38% Similarity=0.365 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
-+|+++|++||||||+.+.+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999854
No 431
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.76 E-value=0.00076 Score=50.85 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
..|+++|.+||||||+.+.|.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La 25 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLA 25 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHH
Confidence 479999999999999999865
No 432
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.74 E-value=0.00083 Score=49.20 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 027607 16 LVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 16 i~v~G~~gsGKStL~~~l~~ 35 (221)
|.|+|+|||||+|....|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999998653
No 433
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.74 E-value=0.00095 Score=46.60 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027607 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~ 34 (221)
.|+|.|.+||||||+.+.|.
T Consensus 9 ~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999854
No 434
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.72 E-value=0.0009 Score=50.20 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
-.+++.|++|+|||||++++..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4699999999999999998653
No 435
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.69 E-value=0.00098 Score=48.32 Aligned_cols=20 Identities=30% Similarity=0.635 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027607 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~ 34 (221)
-.+|+|++|+||||++.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45789999999999999864
No 436
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.69 E-value=0.0011 Score=47.52 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
-.+.|+++|.+||||||+.+.|.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999855
No 437
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.66 E-value=0.0013 Score=47.74 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
+...|+++|++||||||+.+.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999854
No 438
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.66 E-value=0.0011 Score=47.84 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
-.+++.|++|+|||+|++++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998654
No 439
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.64 E-value=0.00086 Score=47.27 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
.-.+++.|++|+|||+|++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998654
No 440
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.64 E-value=0.0012 Score=48.72 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
.-.+++.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998653
No 441
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.64 E-value=0.001 Score=52.90 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
-.++++|++|+|||||++.+.
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999865
No 442
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.64 E-value=0.0014 Score=48.39 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
+-.-|+|.|++||||||+++.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~ 47 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVY 47 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 44679999999999999999855
No 443
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.63 E-value=0.00054 Score=52.56 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=17.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
+.+.|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998653
No 444
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.62 E-value=0.00017 Score=53.32 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 027607 16 LVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 16 i~v~G~~gsGKStL~~~l~~ 35 (221)
++|+|++|||||||++++..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 57899999999999998653
No 445
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.59 E-value=0.0011 Score=50.50 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999998764
No 446
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.57 E-value=0.026 Score=43.32 Aligned_cols=84 Identities=10% Similarity=0.056 Sum_probs=49.8
Q ss_pred EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhh--cCCCCEE-EEEeCCCcCCccccHH
Q 027607 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV-LCGNKVDVKNRQVKAK 137 (221)
Q Consensus 61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i-vv~nK~D~~~~~~~~~ 137 (221)
.+.+.++|+|+..... .....+..+|.++++...+ ..+...+..++..+... ..+.+++ +|+|+.+.. ..
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-----~~ 228 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-----DE 228 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-----HH
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-----HH
Confidence 3578899998743222 1234567899999988764 44555555556655543 2345544 899999842 22
Q ss_pred HHHHHhhcCCeEEE
Q 027607 138 QVTFHRKKNLQYYE 151 (221)
Q Consensus 138 ~~~~~~~~~~~~~~ 151 (221)
...+....+.+++.
T Consensus 229 ~~~~~~~~g~~v~~ 242 (307)
T 3end_A 229 VDRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHHTCCEEE
T ss_pred HHHHHHHcCCCcee
Confidence 33344445666554
No 447
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.55 E-value=0.00082 Score=59.61 Aligned_cols=45 Identities=20% Similarity=0.116 Sum_probs=39.1
Q ss_pred CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHh
Q 027607 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAA 207 (221)
Q Consensus 158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~ 207 (221)
+|-+.....|++++..+|++.++|||+.+ +|......+.+.++++
T Consensus 903 SGGQkQRVaLArAL~~~P~LLLLDEPT~g-----LD~~s~~~L~~~L~~~ 947 (986)
T 2iw3_A 903 SGGQKVKLVLAAGTWQRPHLIVLDEPTNY-----LDRDSLGALSKALKEF 947 (986)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECGGGT-----CCHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCccC-----CCHHHHHHHHHHHHHh
Confidence 45566667799999999999999999999 9999999888888765
No 448
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.55 E-value=0.0011 Score=47.91 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
-.+++.||+|+||||++.++.
T Consensus 59 n~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 359999999999999998855
No 449
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.51 E-value=0.0017 Score=48.10 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
.+...|+|+|++||||||+.+.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIA 37 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHH
Confidence 455689999999999999999855
No 450
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.51 E-value=0.0014 Score=51.43 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607 164 FLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ 210 (221)
Q Consensus 164 ~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
...+++++...|++.++|||+.+ +|+.....+.+.++++..+
T Consensus 262 ~l~~a~~l~~~p~~lllDEp~~~-----LD~~~~~~l~~~l~~~~~~ 303 (339)
T 3qkt_A 262 RLAMSLYLAGEISLLILDEPTPY-----LDEERRRKLITIMERYLKK 303 (339)
T ss_dssp HHHHHHHTTTTTCEEEEECCCTT-----CCHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHhcCCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHHhc
Confidence 35677888889999999999999 9999999999999887654
No 451
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.50 E-value=0.0017 Score=47.93 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
-..+++|+|++||||||+.+.|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 357899999999999999998653
No 452
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.48 E-value=0.0015 Score=50.22 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~ 34 (221)
.-.|+++|++||||||++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999854
No 453
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.47 E-value=0.0019 Score=46.53 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027607 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~ 34 (221)
.|+|.|++||||||+.+.|.
T Consensus 4 ~i~i~G~~GsGKst~~~~la 23 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999854
No 454
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.47 E-value=0.0015 Score=50.12 Aligned_cols=22 Identities=23% Similarity=0.538 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
..|+++|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998764
No 455
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.45 E-value=0.0018 Score=44.17 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
....|++.|++|+|||++.+.+..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999998543
No 456
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.44 E-value=0.0014 Score=54.59 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027607 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~ 34 (221)
.++|+|++|||||||++.++
T Consensus 41 ~~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999999853
No 457
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.43 E-value=0.0015 Score=51.45 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~~ 36 (221)
=-++|+|++|||||||++.++..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999986643
No 458
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.42 E-value=0.0022 Score=50.14 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
..|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5799999999999999998553
No 459
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.42 E-value=0.0017 Score=46.64 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=23.6
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCc
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE 37 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~ 37 (221)
.+.....|+|+|++|+|||||...|....
T Consensus 30 v~~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 30 VDIYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 44556789999999999999999976443
No 460
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.39 E-value=0.0018 Score=49.58 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
+.-.+++.|++|+|||+|++++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 346899999999999999998653
No 461
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.39 E-value=0.0018 Score=47.44 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
.++|.|++|+|||||++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998654
No 462
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.39 E-value=0.0029 Score=51.06 Aligned_cols=24 Identities=42% Similarity=0.628 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
...-|+++|++||||||+.++|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999663
No 463
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.38 E-value=0.0027 Score=48.81 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
.+.-.+++.|++|+|||++++.+..
T Consensus 45 ~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 45 RPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp SCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCcCHHHHHHHHHH
Confidence 3445799999999999999998553
No 464
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.38 E-value=0.0019 Score=51.10 Aligned_cols=47 Identities=17% Similarity=0.076 Sum_probs=40.0
Q ss_pred CCChHHHHHHHHHHHh---------CCCCCccccCCCCCCCccccchHHHHHHHHHHHHhh
Q 027607 157 NYNFEKPFLYLARKLA---------GDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA 208 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~---------~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
.++-+.-...|+.++. ..|++.++|||.++ +|+.....+.+.+.++.
T Consensus 266 lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~-----LD~~~~~~l~~~l~~~~ 321 (359)
T 2o5v_A 266 ASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAE-----LDPHRRQYLLDLAASVP 321 (359)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGC-----CCHHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCcccc-----CCHHHHHHHHHHHHhcC
Confidence 4455666677888888 79999999999999 99999999999998764
No 465
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.38 E-value=0.0019 Score=49.14 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
.-.+++.|++|+|||+|++++..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35699999999999999998653
No 466
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.38 E-value=0.002 Score=49.51 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
..+++.|++|+|||+|.+++..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5678889999999999998653
No 467
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.38 E-value=0.0018 Score=47.96 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
-++|+|++|+|||||+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999877654
No 468
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.36 E-value=0.0019 Score=49.69 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
.-.|++.|++|+|||+|++++..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHH
Confidence 34699999999999999998653
No 469
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.35 E-value=0.0014 Score=49.40 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=20.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHh
Q 027607 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 10 ~~~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
..+-..|+|.|..||||||+++.|.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHH
Confidence 3455789999999999999999743
No 470
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.35 E-value=0.0026 Score=49.05 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
.-|+|+||+|||||||...+..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4588999999999999998653
No 471
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.35 E-value=0.0021 Score=46.55 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
.+++.|++|+|||+|++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998653
No 472
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.34 E-value=0.00066 Score=54.69 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=0.0
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 027607 15 KLVIVGDGGTGKTTFVKRH 33 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l 33 (221)
.++++|++|||||||++++
T Consensus 62 ~~~lvG~NGaGKStLl~aI 80 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDAL 80 (415)
T ss_dssp EEEEEESHHHHHHHHTHHH
T ss_pred cEEEECCCCCCHHHHHHHH
No 473
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.33 E-value=0.0025 Score=49.07 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=20.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
.+...+++.|++|+|||+|++.+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999998644
No 474
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.32 E-value=0.0014 Score=50.99 Aligned_cols=49 Identities=14% Similarity=0.045 Sum_probs=40.0
Q ss_pred CCCChHHHHHHHHHHHh----CCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 156 SNYNFEKPFLYLARKLA----GDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 156 ~~~gv~~~~~~l~~~l~----~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
.-.+-+.....|++++. ..+++.++|||+++ +|+.....+.+.++++..
T Consensus 219 ~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~-----LD~~~~~~l~~~l~~~~~ 271 (322)
T 1e69_A 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSP-----LDDYNAERFKRLLKENSK 271 (322)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSS-----CCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHhcC
Confidence 33455666677888875 67889999999999 999999999999998753
No 475
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.32 E-value=0.0022 Score=49.58 Aligned_cols=85 Identities=12% Similarity=0.007 Sum_probs=45.0
Q ss_pred EEEEEEecCCccccccc-c------cc-----ccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCc
Q 027607 62 IRFYCWDTAGQEKFGGL-R------DG-----YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (221)
Q Consensus 62 ~~i~~~D~~g~~~~~~~-~------~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 129 (221)
..+.++||||....... . .. .-...+.+++|+|+.... +.+.. ...+... -...-+|+||.|.
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~--~~i~gvVlTk~D~ 261 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEA--VNVTGIILTKLDG 261 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHH--SCCCEEEEECGGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhc--CCCCEEEEeCCCC
Confidence 45889999995321110 0 00 112467888999987432 11211 1222222 2234567899996
Q ss_pred CCccccHHHHHHHhhcCCeEEEec
Q 027607 130 KNRQVKAKQVTFHRKKNLQYYEIS 153 (221)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~s 153 (221)
... ...........+.++..++
T Consensus 262 ~~~--gG~~l~~~~~~~~Pi~~i~ 283 (306)
T 1vma_A 262 TAK--GGITLAIARELGIPIKFIG 283 (306)
T ss_dssp CSC--TTHHHHHHHHHCCCEEEEE
T ss_pred ccc--hHHHHHHHHHHCCCEEEEe
Confidence 432 2235566666777766654
No 476
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.30 E-value=0.0027 Score=47.54 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
.-.|++.|++|+|||+|++++..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998653
No 477
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.29 E-value=0.0029 Score=48.81 Aligned_cols=22 Identities=27% Similarity=0.184 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
.-|+|+||+|||||||...+..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 4689999999999999999654
No 478
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.27 E-value=0.0021 Score=49.94 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
-.+++.|++|+|||||++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999998653
No 479
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.26 E-value=0.0022 Score=51.97 Aligned_cols=48 Identities=19% Similarity=0.113 Sum_probs=40.3
Q ss_pred CCChHHHHHHHHHHHh----CCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607 157 NYNFEKPFLYLARKLA----GDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS 209 (221)
Q Consensus 157 ~~gv~~~~~~l~~~l~----~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
..|-+.....|+.++. ..++++++|||.++ +|+.....+.+.++++..
T Consensus 334 lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~-----LD~~~~~~l~~~l~~~~~ 385 (430)
T 1w1w_A 334 LSGGEKTVAALALLFAINSYQPSPFFVLDEVDAA-----LDITNVQRIAAYIRRHRN 385 (430)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTT-----CCHHHHHHHHHHHHHHCB
T ss_pred CCcchHHHHHHHHHHHHhcCCCCCEEEeCCCccc-----CCHHHHHHHHHHHHHHhc
Confidence 3555666778888887 57889999999999 999999999999988754
No 480
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.26 E-value=0.0032 Score=48.91 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998553
No 481
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.25 E-value=0.0018 Score=50.85 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 027607 16 LVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 16 i~v~G~~gsGKStL~~~l~~ 35 (221)
+++.|++|+||||+++.+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998554
No 482
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.24 E-value=0.0028 Score=44.50 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=23.8
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHhcCc
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE 37 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~ 37 (221)
.+..-.-|++.|++|+||||+.-.|+...
T Consensus 12 v~v~G~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 12 LVIDKMGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEETTEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEECCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 34556689999999999999999987644
No 483
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.21 E-value=0.0025 Score=46.46 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
+.|+++|++||||||+.+.+.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~ 24 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVA 24 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999754
No 484
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.21 E-value=0.0017 Score=54.25 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
+-..|+|+|++|||||||.+.|.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La 390 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALA 390 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHH
Confidence 34679999999999999999854
No 485
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.20 E-value=0.0035 Score=47.40 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 027607 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 11 ~~~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
.+...+++.|++|+|||+|++++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4556899999999999999998654
No 486
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.17 E-value=0.0024 Score=50.48 Aligned_cols=23 Identities=43% Similarity=0.499 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
.-.++|.|++|+|||||++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999998664
No 487
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.14 E-value=0.0041 Score=48.83 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
...+|+++|++|+||||+.+.+..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 446899999999999999987543
No 488
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.14 E-value=0.0032 Score=49.95 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
.++|.|++|+|||||++.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998663
No 489
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.14 E-value=0.0027 Score=49.73 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 027607 15 KLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~ 35 (221)
.+++.|++|+||||+++.+..
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998654
No 490
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.11 E-value=0.0044 Score=45.55 Aligned_cols=26 Identities=27% Similarity=0.179 Sum_probs=20.8
Q ss_pred ccCCceEEEEEcCCCCcHHHHHHHHh
Q 027607 9 VDYPSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 9 ~~~~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
...+-.-|+|.|..||||||+++.+.
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34456789999999999999999854
No 491
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.09 E-value=0.0029 Score=50.71 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 027607 15 KLVIVGDGGTGKTTFVKRHLTG 36 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~~~ 36 (221)
-++|+|++|+|||||+..++..
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHH
Confidence 4889999999999999976533
No 492
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.07 E-value=0.0018 Score=44.05 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~ 34 (221)
...|++.|++|+|||++.+.+.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGC
T ss_pred CCcEEEECCCCccHHHHHHHHH
Confidence 3569999999999999999743
No 493
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.03 E-value=0.004 Score=48.41 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
+.-.|++.|++|+|||+|++++..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999999998653
No 494
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.02 E-value=0.0036 Score=48.00 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
...+++.|++|+|||+|++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998653
No 495
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.0044 Score=50.15 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 027607 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 12 ~~~~i~v~G~~gsGKStL~~~l~ 34 (221)
+.-.|++.||||+|||+|++++.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA 236 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACA 236 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHH
Confidence 34689999999999999999955
No 496
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.97 E-value=0.0052 Score=47.95 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
.-|+|+|++|||||||...|..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998554
No 497
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.0045 Score=50.00 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 027607 14 FKLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~ 34 (221)
-.|++.||||+|||+|++++.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999955
No 498
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.95 E-value=0.0046 Score=48.10 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 027607 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 13 ~~~i~v~G~~gsGKStL~~~l~~ 35 (221)
.-.|++.|++|+|||+|++++..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 35799999999999999998653
No 499
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.93 E-value=0.0036 Score=54.36 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 027607 15 KLVIVGDGGTGKTTFVKRHL 34 (221)
Q Consensus 15 ~i~v~G~~gsGKStL~~~l~ 34 (221)
.++|+|++|+|||||++.+.
T Consensus 578 i~~I~GpNGsGKSTlLr~ia 597 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTA 597 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 58999999999999999854
No 500
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.91 E-value=0.0053 Score=45.53 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 027607 14 FKLVIVGDGGTGKTTFVKRHLT 35 (221)
Q Consensus 14 ~~i~v~G~~gsGKStL~~~l~~ 35 (221)
..|+|.|..||||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5699999999999999998553
Done!