Query 027608
Match_columns 221
No_of_seqs 195 out of 1338
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 12:29:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027608.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027608hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 4.6E-28 9.9E-33 214.9 22.2 203 9-212 10-218 (358)
2 PRK11272 putative DMT superfam 99.9 2.2E-21 4.8E-26 167.7 21.5 166 13-209 9-176 (292)
3 PRK11689 aromatic amino acid e 99.9 6.6E-22 1.4E-26 171.3 17.6 180 10-213 2-186 (295)
4 PRK11453 O-acetylserine/cystei 99.9 1.2E-20 2.6E-25 163.6 20.4 164 14-211 6-171 (299)
5 TIGR00688 rarD rarD protein. T 99.9 1.1E-20 2.3E-25 160.2 19.4 163 12-207 2-170 (256)
6 PRK15430 putative chlorampheni 99.9 5.7E-21 1.2E-25 165.4 17.5 166 8-207 4-173 (296)
7 TIGR00950 2A78 Carboxylate/Ami 99.9 1.4E-20 3E-25 159.1 17.5 156 24-212 1-157 (260)
8 PRK10532 threonine and homoser 99.8 1.5E-18 3.3E-23 150.1 19.4 169 10-213 10-178 (293)
9 TIGR00817 tpt Tpt phosphate/ph 99.8 2.9E-18 6.3E-23 148.7 19.3 157 29-213 19-177 (302)
10 PTZ00343 triose or hexose phos 99.7 3.3E-16 7.1E-21 138.9 20.9 153 28-210 65-221 (350)
11 TIGR03340 phn_DUF6 phosphonate 99.7 1.6E-16 3.6E-21 136.5 17.9 169 14-212 3-173 (281)
12 PF00892 EamA: EamA-like trans 99.7 3.1E-16 6.8E-21 117.3 11.1 124 22-153 1-125 (126)
13 COG0697 RhaT Permeases of the 99.7 2.3E-14 5.1E-19 121.6 20.8 174 10-211 5-181 (292)
14 PF06027 DUF914: Eukaryotic pr 99.7 1.4E-14 3.1E-19 127.1 19.4 173 21-211 22-196 (334)
15 TIGR00950 2A78 Carboxylate/Ami 99.5 2.4E-12 5.1E-17 108.7 16.6 132 9-149 125-259 (260)
16 COG2510 Predicted membrane pro 99.5 4.2E-13 9.1E-18 100.9 10.3 133 14-153 5-138 (140)
17 TIGR00776 RhaT RhaT L-rhamnose 99.5 4.9E-12 1.1E-16 109.5 17.1 178 13-214 2-181 (290)
18 PF13536 EmrE: Multidrug resis 99.4 5.7E-12 1.2E-16 94.2 9.4 103 46-155 2-107 (113)
19 PRK10532 threonine and homoser 99.3 1.5E-10 3.3E-15 100.1 17.2 135 11-155 147-282 (293)
20 PRK11272 putative DMT superfam 99.3 1.9E-10 4E-15 99.5 16.9 136 11-154 149-285 (292)
21 COG2962 RarD Predicted permeas 99.2 1.4E-09 3E-14 92.6 17.4 163 10-205 5-170 (293)
22 PRK11689 aromatic amino acid e 99.2 1E-09 2.3E-14 95.0 16.1 132 11-153 155-286 (295)
23 PLN00411 nodulin MtN21 family 99.2 1.4E-09 2.9E-14 97.0 17.2 137 13-157 190-331 (358)
24 PRK11453 O-acetylserine/cystei 99.1 5.2E-09 1.1E-13 90.7 17.7 136 11-153 142-286 (299)
25 COG5006 rhtA Threonine/homoser 99.1 7.1E-09 1.5E-13 86.7 16.5 159 13-207 13-172 (292)
26 TIGR00817 tpt Tpt phosphate/ph 99.1 1.6E-09 3.4E-14 94.0 12.2 140 10-155 143-294 (302)
27 PF08449 UAA: UAA transporter 99.1 2E-08 4.4E-13 87.3 18.8 165 29-213 17-184 (303)
28 KOG2765 Predicted membrane pro 99.1 8.3E-10 1.8E-14 96.7 9.1 113 79-210 162-274 (416)
29 TIGR03340 phn_DUF6 phosphonate 99.0 3.6E-09 7.9E-14 90.9 10.6 133 11-151 143-280 (281)
30 PF03151 TPT: Triose-phosphate 98.9 9.3E-08 2E-12 74.3 15.5 132 14-151 2-150 (153)
31 PTZ00343 triose or hexose phos 98.9 9.5E-08 2.1E-12 84.9 17.4 138 10-153 192-347 (350)
32 KOG4510 Permease of the drug/m 98.9 2.9E-10 6.2E-15 95.7 1.1 178 14-209 40-217 (346)
33 PRK15430 putative chlorampheni 98.8 2.8E-07 6E-12 79.9 15.3 131 15-153 152-284 (296)
34 COG0697 RhaT Permeases of the 98.8 5.4E-07 1.2E-11 76.3 16.8 132 11-153 153-286 (292)
35 TIGR00776 RhaT RhaT L-rhamnose 98.7 3.7E-07 8.1E-12 79.0 13.8 133 11-153 151-287 (290)
36 PRK15051 4-amino-4-deoxy-L-ara 98.6 8.1E-07 1.8E-11 66.3 10.2 68 80-153 40-108 (111)
37 PF04142 Nuc_sug_transp: Nucle 98.5 2.8E-06 6E-11 72.0 13.9 129 72-210 13-141 (244)
38 PRK02971 4-amino-4-deoxy-L-ara 98.5 6.8E-06 1.5E-10 62.9 13.4 117 12-153 2-121 (129)
39 KOG2234 Predicted UDP-galactos 98.5 6.3E-05 1.4E-09 66.0 20.9 182 12-209 15-209 (345)
40 COG5006 rhtA Threonine/homoser 98.4 8.4E-06 1.8E-10 68.5 13.2 132 10-150 146-278 (292)
41 KOG4314 Predicted carbohydrate 98.2 2.5E-06 5.5E-11 69.3 5.6 100 87-211 64-163 (290)
42 KOG1441 Glucose-6-phosphate/ph 98.2 5.5E-06 1.2E-10 72.4 7.5 151 30-207 35-187 (316)
43 PF06027 DUF914: Eukaryotic pr 97.9 0.0002 4.4E-09 63.2 12.8 141 8-155 164-306 (334)
44 KOG3912 Predicted integral mem 97.9 0.00043 9.3E-09 59.3 13.4 169 25-210 16-203 (372)
45 TIGR00688 rarD rarD protein. T 97.8 0.00068 1.5E-08 57.2 13.9 101 16-123 150-255 (256)
46 PF06800 Sugar_transport: Suga 97.8 0.00054 1.2E-08 58.7 13.2 133 10-151 136-268 (269)
47 KOG2766 Predicted membrane pro 97.8 5.8E-07 1.3E-11 75.5 -4.9 149 40-212 47-195 (336)
48 PF08449 UAA: UAA transporter 97.7 0.0016 3.4E-08 56.6 15.1 136 13-154 155-297 (303)
49 PF06800 Sugar_transport: Suga 97.7 0.0016 3.4E-08 55.8 14.1 118 73-205 42-160 (269)
50 KOG1443 Predicted integral mem 97.7 0.00099 2.1E-08 57.6 12.3 120 70-216 77-198 (349)
51 KOG1444 Nucleotide-sugar trans 97.5 0.017 3.6E-07 50.3 18.0 155 27-209 27-183 (314)
52 PRK13499 rhamnose-proton sympo 97.4 0.01 2.2E-07 52.7 15.6 173 10-199 5-190 (345)
53 PRK10650 multidrug efflux syst 97.4 0.0066 1.4E-07 45.1 11.9 63 84-152 42-106 (109)
54 PRK10452 multidrug efflux syst 97.3 0.0019 4.1E-08 48.8 8.0 68 81-154 34-103 (120)
55 COG2076 EmrE Membrane transpor 97.3 0.0024 5.2E-08 47.0 8.3 67 81-153 34-102 (106)
56 KOG1441 Glucose-6-phosphate/ph 97.3 0.0011 2.5E-08 58.0 7.7 138 9-153 160-306 (316)
57 PF04657 DUF606: Protein of un 97.2 0.016 3.4E-07 44.8 13.1 107 40-151 29-138 (138)
58 PRK09541 emrE multidrug efflux 97.2 0.0035 7.5E-08 46.7 8.5 67 82-154 35-103 (110)
59 PRK11431 multidrug efflux syst 97.0 0.0055 1.2E-07 45.2 7.9 64 84-153 36-101 (105)
60 COG2962 RarD Predicted permeas 97.0 0.057 1.2E-06 46.5 15.1 127 18-153 154-282 (293)
61 PF10639 UPF0546: Uncharacteri 96.9 0.0032 6.9E-08 47.0 5.9 108 18-151 2-111 (113)
62 PRK13499 rhamnose-proton sympo 96.8 0.091 2E-06 46.7 15.9 143 11-154 173-341 (345)
63 KOG4510 Permease of the drug/m 96.8 0.00074 1.6E-08 57.5 2.2 134 12-153 191-324 (346)
64 PF00893 Multi_Drug_Res: Small 96.6 0.011 2.3E-07 42.5 6.7 56 83-144 35-92 (93)
65 PF05653 Mg_trans_NIPA: Magnes 96.4 0.047 1E-06 47.7 11.0 69 81-155 54-123 (300)
66 KOG2765 Predicted membrane pro 96.4 0.043 9.2E-07 49.0 10.5 141 8-155 243-391 (416)
67 KOG1580 UDP-galactose transpor 96.1 0.02 4.4E-07 48.1 6.8 109 87-215 96-204 (337)
68 KOG1581 UDP-galactose transpor 95.8 0.33 7.1E-06 42.3 13.1 148 40-210 50-199 (327)
69 COG4975 GlcU Putative glucose 95.8 0.00054 1.2E-08 57.6 -3.9 171 13-205 3-174 (288)
70 TIGR00803 nst UDP-galactose tr 95.2 0.18 3.9E-06 41.5 9.2 61 84-150 160-220 (222)
71 KOG1580 UDP-galactose transpor 94.2 0.11 2.3E-06 43.9 5.3 73 74-152 239-311 (337)
72 COG3238 Uncharacterized protei 94.1 2.2 4.9E-05 33.4 13.3 110 40-152 33-144 (150)
73 KOG1444 Nucleotide-sugar trans 93.3 1.2 2.6E-05 39.0 10.4 137 11-153 156-299 (314)
74 KOG2922 Uncharacterized conser 92.4 0.071 1.5E-06 46.6 1.7 118 10-155 19-137 (335)
75 COG4975 GlcU Putative glucose 91.2 0.2 4.2E-06 42.5 3.0 132 13-153 153-284 (288)
76 KOG3912 Predicted integral mem 91.0 7.2 0.00016 34.0 12.2 136 11-152 175-332 (372)
77 KOG1582 UDP-galactose transpor 90.9 2.5 5.4E-05 36.6 9.3 191 2-221 32-228 (367)
78 COG5070 VRG4 Nucleotide-sugar 89.7 3.1 6.8E-05 35.0 8.7 132 14-151 157-293 (309)
79 KOG1442 GDP-fucose transporter 89.2 0.74 1.6E-05 39.8 4.8 143 40-206 60-208 (347)
80 KOG1581 UDP-galactose transpor 88.7 7.8 0.00017 34.0 10.8 134 12-152 172-311 (327)
81 KOG1583 UDP-N-acetylglucosamin 85.7 3.1 6.7E-05 36.0 6.6 131 69-210 60-191 (330)
82 PF04142 Nuc_sug_transp: Nucle 81.3 32 0.00069 29.0 13.8 120 11-130 113-235 (244)
83 COG5070 VRG4 Nucleotide-sugar 80.0 2.3 5E-05 35.8 3.6 143 41-207 37-179 (309)
84 KOG1443 Predicted integral mem 76.8 53 0.0012 29.0 12.5 135 12-152 164-313 (349)
85 KOG1582 UDP-galactose transpor 76.2 19 0.00042 31.3 8.1 112 39-156 218-334 (367)
86 PF07857 DUF1632: CEO family ( 75.9 46 0.001 28.4 10.5 187 13-209 1-209 (254)
87 KOG1442 GDP-fucose transporter 70.9 14 0.00031 32.1 6.1 146 2-153 172-326 (347)
88 PF06379 RhaT: L-rhamnose-prot 68.8 87 0.0019 28.0 14.1 178 11-201 6-191 (344)
89 KOG4831 Unnamed protein [Funct 65.3 13 0.00029 27.5 4.2 117 15-152 6-123 (125)
90 COG4657 RnfA Predicted NADH:ub 62.6 33 0.00071 27.4 6.2 31 179-209 128-158 (193)
91 TIGR00803 nst UDP-galactose tr 58.9 28 0.0006 28.4 5.7 96 106-210 8-112 (222)
92 PF05653 Mg_trans_NIPA: Magnes 54.1 33 0.00072 29.9 5.6 76 79-154 214-292 (300)
93 PF04342 DUF486: Protein of un 51.4 97 0.0021 22.9 8.5 52 95-152 54-106 (108)
94 COG3086 RseC Positive regulato 49.3 42 0.00091 26.2 4.8 54 96-153 68-121 (150)
95 PF09656 PGPGW: Putative trans 47.6 71 0.0015 20.5 4.9 46 138-209 5-50 (53)
96 PRK15462 dipeptide/tripeptide 47.2 2.5E+02 0.0053 26.3 11.2 28 95-122 294-327 (493)
97 CHL00196 psbY photosystem II p 42.3 35 0.00076 20.0 2.6 22 185-207 8-29 (36)
98 PRK14995 methyl viologen resis 38.4 3.1E+02 0.0068 25.0 16.5 54 96-153 288-343 (495)
99 PF06298 PsbY: Photosystem II 37.5 53 0.0012 19.3 2.9 18 185-202 8-25 (36)
100 PF07123 PsbW: Photosystem II 37.3 38 0.00082 26.1 2.9 28 181-208 104-131 (138)
101 PRK02237 hypothetical protein; 33.0 2E+02 0.0044 21.3 8.8 34 115-154 72-105 (109)
102 PRK13240 pbsY photosystem II p 32.2 60 0.0013 19.5 2.6 17 185-201 8-24 (40)
103 KOG2922 Uncharacterized conser 30.4 1.8E+02 0.0039 25.9 6.2 67 87-153 238-305 (335)
104 PF04246 RseC_MucC: Positive r 29.4 1E+02 0.0022 23.2 4.2 26 99-124 64-89 (135)
105 PRK10862 SoxR reducing system 29.1 1.1E+02 0.0025 23.8 4.5 29 96-124 68-96 (154)
106 COG2246 Predicted membrane pro 29.0 2.6E+02 0.0057 21.3 8.2 59 71-133 8-69 (139)
107 PF03596 Cad: Cadmium resistan 28.8 3.2E+02 0.0069 22.2 10.2 138 73-217 25-170 (191)
108 PF02694 UPF0060: Uncharacteri 27.9 77 0.0017 23.4 3.1 35 114-154 69-103 (107)
109 PF11139 DUF2910: Protein of u 26.3 3.5E+02 0.0076 21.9 12.3 44 110-153 160-210 (214)
110 PF10754 DUF2569: Protein of u 25.5 3.1E+02 0.0068 21.0 8.6 28 182-209 120-147 (149)
111 PF07857 DUF1632: CEO family ( 25.2 2.1E+02 0.0046 24.4 5.8 54 9-62 180-244 (254)
112 PF11460 DUF3007: Protein of u 24.7 2E+02 0.0043 21.1 4.7 37 87-123 19-55 (104)
113 KOG1583 UDP-N-acetylglucosamin 24.6 4.8E+02 0.011 22.9 10.0 131 15-153 167-313 (330)
114 PLN00077 photosystem II reacti 24.5 61 0.0013 24.3 2.0 27 181-207 93-119 (128)
115 PRK10213 nepI ribonucleoside t 23.5 5.1E+02 0.011 22.7 12.9 77 71-151 14-101 (394)
116 PF08802 CytB6-F_Fe-S: Cytochr 21.4 1.9E+02 0.0042 17.2 3.4 27 69-95 4-31 (39)
117 TIGR01647 ATPase-IIIA_H plasma 21.2 8E+02 0.017 24.3 9.7 110 39-151 625-751 (755)
118 PF11361 DUF3159: Protein of u 20.5 4.7E+02 0.01 21.2 7.7 81 100-206 24-104 (187)
119 PF08370 PDR_assoc: Plant PDR 20.5 51 0.0011 22.0 0.9 30 74-103 26-57 (65)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.96 E-value=4.6e-28 Score=214.88 Aligned_cols=203 Identities=38% Similarity=0.554 Sum_probs=162.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCC-CCCCCHHHHHHHHHHHHHHH
Q 027608 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE-RPQLTFSILCSFFLLSVFGC 87 (221)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~g~ 87 (221)
++.++|..++..++.+++..++.|.+++.|++|+.+.++|+.+|+++++|+++.++|++ +++.+++++.++.++|++++
T Consensus 10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~ 89 (358)
T PLN00411 10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGS 89 (358)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999987655432 24446788899999999886
Q ss_pred HHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCC
Q 027608 88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS 167 (221)
Q Consensus 88 ~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~ 167 (221)
.++.+++.|++||+|++++++.+++|+++++++++++.|+++.+++.++.|++|++++++|+.++...+++.... .+|+
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~-~~~~ 168 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFV-ASSP 168 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccc-cccc
Confidence 677899999999999999999999999999999999766666666666778999999999999887544421100 0000
Q ss_pred C-----CCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 027608 168 G-----SPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFYK 212 (221)
Q Consensus 168 ~-----~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~~~ 212 (221)
. .+..+......++.+|+++.+++++|||+|++++|+..++||+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~ 218 (358)
T PLN00411 169 PYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAA 218 (358)
T ss_pred ccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 0 00000011123456799999999999999999999999999875
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.89 E-value=2.2e-21 Score=167.68 Aligned_cols=166 Identities=10% Similarity=0.018 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 027608 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQI 91 (221)
Q Consensus 13 ~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~~~~ 91 (221)
-.+.++...++||.+++++|...+ ++||.+++++|+.+++++++++...+ | ++ ..+++++++....|.++ ..++.
T Consensus 9 ~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~-~-~~-~~~~~~~~~~~~~g~~~~~~~~~ 84 (292)
T PRK11272 9 LFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR-G-HP-LPTLRQWLNAALIGLLLLAVGNG 84 (292)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh-C-CC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 356677889999999999999887 59999999999999999998876542 2 22 23577888888999988 88899
Q ss_pred HHHHHh-hccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCC
Q 027608 92 FSFVGI-QYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSP 170 (221)
Q Consensus 92 ~~~~gl-~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~ 170 (221)
+++.+. +++++++++++.++.|+++.+++++ +|||++++ +++|++++++|+.++... +.
T Consensus 85 ~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~-~~------------ 144 (292)
T PRK11272 85 MVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSG-GN------------ 144 (292)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcC-cc------------
Confidence 999999 9999999999999999999999986 69999865 689999999999887521 10
Q ss_pred CcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 027608 171 RRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFL 209 (221)
Q Consensus 171 ~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~ 209 (221)
. ++...|+++.+++++|||.|++.+||..++.
T Consensus 145 ------~-~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~~ 176 (292)
T PRK11272 145 ------L-SGNPWGAILILIASASWAFGSVWSSRLPLPV 176 (292)
T ss_pred ------c-ccchHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 1 1224799999999999999999999986543
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.89 E-value=6.6e-22 Score=171.25 Aligned_cols=180 Identities=17% Similarity=0.093 Sum_probs=136.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HH
Q 027608 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS 88 (221)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~ 88 (221)
+.++++.++.+.++||++++..|.++++ +||+.+.++|+.+|+++++++. .+ ++.+ ++.++..+.+.++ +.
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~---~~---~~~~-~~~~~~~~~~~l~~~~ 73 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV---GF---PRLR-QFPKRYLLAGGLLFVS 73 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc---cc---cccc-cccHHHHHHHhHHHHH
Confidence 3467788999999999999999998875 9999999999999999988752 11 1111 1222344556667 88
Q ss_pred HHHHHHHHhhc----cchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCC
Q 027608 89 SQIFSFVGIQY----SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL 164 (221)
Q Consensus 89 ~~~~~~~gl~~----t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~ 164 (221)
++.+++.|++| +++++++++.++.|+++.+++++++|||++++ |++|++++++|+.++... +..... .
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~-~~~~~~-~ 145 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGG-DNGLSL-A 145 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecC-Cccchh-h
Confidence 88888888865 57888999999999999999999999999865 689999999999887632 110000 0
Q ss_pred CCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 027608 165 SHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFYKA 213 (221)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~~~~ 213 (221)
+......+...|+++.++|++|||+|+++.||..+++++..
T Consensus 146 --------~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~ 186 (295)
T PRK11689 146 --------ELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKNGIT 186 (295)
T ss_pred --------hhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCCchh
Confidence 00001112246999999999999999999999988877653
No 4
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.87 E-value=1.2e-20 Score=163.62 Aligned_cols=164 Identities=19% Similarity=0.146 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HHHHHH
Q 027608 14 SVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIF 92 (221)
Q Consensus 14 ~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~~~~~ 92 (221)
.+..++++++||.+++++|..++ ++||..+.++|+.++++.++++. + ++ +.+++ ..+..|++. ..++.+
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~--~-~~---~~~~~---~~~~~g~~~~~~~~~~ 75 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV--A-RP---KVPLN---LLLGYGLTISFGQFAF 75 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh--c-CC---CCchH---HHHHHHHHHHHHHHHH
Confidence 45678889999999999999887 49999999999999887776653 1 11 12222 345566666 667778
Q ss_pred HHHHhhc-cchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCC
Q 027608 93 SFVGIQY-SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR 171 (221)
Q Consensus 93 ~~~gl~~-t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~ 171 (221)
++.+++| .++++++++.++.|+++.+++++++|||++++ +++|++++++|+.++... +.+
T Consensus 76 ~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~~-~~~------------ 136 (299)
T PRK11453 76 LFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIED-SLN------------ 136 (299)
T ss_pred HHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhccc-cCC------------
Confidence 8899998 58899999999999999999999999999865 689999999999887521 100
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 027608 172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFY 211 (221)
Q Consensus 172 ~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~~ 211 (221)
..+....|+++.++++++|+.|++++||..+++++
T Consensus 137 -----~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~ 171 (299)
T PRK11453 137 -----GQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTR 171 (299)
T ss_pred -----CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 11223479999999999999999999998776643
No 5
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.87 E-value=1.1e-20 Score=160.20 Aligned_cols=163 Identities=13% Similarity=0.047 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCC-----CCCCCHHH-HHHHHHHHHH
Q 027608 12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE-----RPQLTFSI-LCSFFLLSVF 85 (221)
Q Consensus 12 ~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~-----~~~~~~~~-~~~~~~lg~~ 85 (221)
+++..++++.++||.+++++|. .. ++||.++.++|+.+|+++++++...+++++ .++.++++ +....+.|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 4778899999999999999998 45 499999999999999988877654332211 11122232 3345556666
Q ss_pred HHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCC
Q 027608 86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS 165 (221)
Q Consensus 86 g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~ 165 (221)
...++.+++++++++++++|+++.++.|+++++++++++|||++++ +++|++++++|+.++...++
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~~-------- 145 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLKG-------- 145 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHcC--------
Confidence 6889999999999999999999999999999999999999999875 68999999999988753211
Q ss_pred CCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027608 166 HSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFN 207 (221)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~ 207 (221)
+.+ .+.+++++||+.|.+.+|+..+
T Consensus 146 ------------~~~-----~~~l~aa~~~a~~~i~~~~~~~ 170 (256)
T TIGR00688 146 ------------SLP-----WEALVLAFSFTAYGLIRKALKN 170 (256)
T ss_pred ------------Cch-----HHHHHHHHHHHHHHHHHhhcCC
Confidence 011 3467899999999999998764
No 6
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.87 E-value=5.7e-21 Score=165.44 Aligned_cols=166 Identities=11% Similarity=0.009 Sum_probs=131.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCC--CC-CCHHHHHHHHHHHH
Q 027608 8 MRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER--PQ-LTFSILCSFFLLSV 84 (221)
Q Consensus 8 ~~~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~--~~-~~~~~~~~~~~lg~ 84 (221)
+++.++++.++.+.++||.+++++|.. . ++||.++.++|+.++.++++++...+++... ++ .+++++. ....+.
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 80 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLAVSA 80 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHHHHH
Confidence 355678999999999999999999975 4 5999999999999999888877544221110 00 1234332 334677
Q ss_pred HH-HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCC
Q 027608 85 FG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGE 163 (221)
Q Consensus 85 ~g-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~ 163 (221)
++ +.++.++++|++++++++++++.++.|+++.+++++++|||++++ +++|++++++|+.++...++
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~~------ 148 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTFG------ 148 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHcC------
Confidence 77 899999999999999999999999999999999999999999875 68999999999988752211
Q ss_pred CCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027608 164 LSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFN 207 (221)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~ 207 (221)
.. ..+.++++++||.|++..|+..+
T Consensus 149 ---------------~~----~~~~l~aa~~~a~~~i~~r~~~~ 173 (296)
T PRK15430 149 ---------------SL----PIIALGLAFSFAFYGLVRKKIAV 173 (296)
T ss_pred ---------------Cc----cHHHHHHHHHHHHHHHHHHhcCC
Confidence 01 14577899999999999988754
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.86 E-value=1.4e-20 Score=159.05 Aligned_cols=156 Identities=14% Similarity=0.049 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccch
Q 027608 24 QVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSP 102 (221)
Q Consensus 24 wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~~~~~~~~gl~~t~a 102 (221)
||.+++..|..++++.||....+.|+..+.+++.++... + .+++++.+.+..|.++ .+++.+++.|++|+++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~ 73 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV 73 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 899999999998877899999999999998888876432 2 2356777888999999 9999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhH
Q 027608 103 TLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWI 182 (221)
Q Consensus 103 ~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (221)
++++++.++.|+++.+++.+++|||++++ +++|++++++|+.++... ++ .++..
T Consensus 74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~~-~~-------------------~~~~~ 127 (260)
T TIGR00950 74 GEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLSD-GN-------------------LSINP 127 (260)
T ss_pred hhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhccC-Cc-------------------ccccH
Confidence 99999999999999999999999999865 689999999999887521 10 11235
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 027608 183 LGGFFLAAEAFMNSAWFILQVWPFNFLFYK 212 (221)
Q Consensus 183 ~G~ll~l~aa~~~a~y~i~~k~~~~~~~~~ 212 (221)
.|+++.++++++|+.|.++.|+..+++++.
T Consensus 128 ~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~ 157 (260)
T TIGR00950 128 AGLLLGLGSGISFALGTVLYKRLVKKEGPE 157 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhcCCch
Confidence 799999999999999999999999888754
No 8
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.82 E-value=1.5e-18 Score=150.06 Aligned_cols=169 Identities=9% Similarity=-0.004 Sum_probs=134.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHH
Q 027608 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSS 89 (221)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~ 89 (221)
+.+++..++++.++|+.+.+++|.+.++ +||..+.++|+.+|+++++++.. .++ ++.++|+++..+..|++....
T Consensus 10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~--~~~--~~~~~~~~~~~~~~g~~~~~~ 84 (293)
T PRK10532 10 VWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFK--PWR--LRFAKEQRLPLLFYGVSLGGM 84 (293)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHh--HHh--ccCCHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999885 99999999999999999887642 122 234578888888888877677
Q ss_pred HHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCC
Q 027608 90 QIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGS 169 (221)
Q Consensus 90 ~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~ 169 (221)
+.+++++++|++++.++++.++.|+++.+++ +||.+ +..++.++++|+.++.. .+.+
T Consensus 85 ~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~~-~~~~---------- 141 (293)
T PRK10532 85 NYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLLP-LGQD---------- 141 (293)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheeee-cCCC----------
Confidence 7889999999999999999999999998876 24432 34567888999988752 1211
Q ss_pred CCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 027608 170 PRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFYKA 213 (221)
Q Consensus 170 ~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~~~~ 213 (221)
.+.....|+++.++++++||.|++..||..+++++..
T Consensus 142 -------~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~ 178 (293)
T PRK10532 142 -------VSHVDLTGAALALGAGACWAIYILSGQRAGAEHGPAT 178 (293)
T ss_pred -------cccCChHHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Confidence 0111247999999999999999999999988887644
No 9
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.81 E-value=2.9e-18 Score=148.67 Aligned_cols=157 Identities=14% Similarity=0.076 Sum_probs=128.1
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHh
Q 027608 29 EVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAM 108 (221)
Q Consensus 29 v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i 108 (221)
+.-|.++++--+|..+++.|+.++.+.+.+... ...+++++.+++|+++++.+|++++.++.+.+.+++|+++++++++
T Consensus 19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li 97 (302)
T TIGR00817 19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTI 97 (302)
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 467888875367999999999999877665421 1122234567899999999999998888999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHHHHHHH
Q 027608 109 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL 188 (221)
Q Consensus 109 ~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~ 188 (221)
.+++|+++.+++++++|||++++ +++|++++++|+.+.. . + +.+....|+++.
T Consensus 98 ~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~-~-~-------------------~~~~~~~G~~~~ 150 (302)
T TIGR00817 98 KAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS-D-T-------------------ELSFNWAGFLSA 150 (302)
T ss_pred HhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc-C-C-------------------cccccHHHHHHH
Confidence 99999999999999999999865 6899999999997653 1 1 011224699999
Q ss_pred HHHHHHHHHHHHHHhhhhc--cccccc
Q 027608 189 AAEAFMNSAWFILQVWPFN--FLFYKA 213 (221)
Q Consensus 189 l~aa~~~a~y~i~~k~~~~--~~~~~~ 213 (221)
++|+++|++|+++.||..+ ++++..
T Consensus 151 l~a~~~~a~~~v~~k~~~~~~~~~~~~ 177 (302)
T TIGR00817 151 MISNITFVSRNIFSKKAMTIKSLDKTN 177 (302)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCccc
Confidence 9999999999999999988 676654
No 10
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.74 E-value=3.3e-16 Score=138.92 Aligned_cols=153 Identities=15% Similarity=0.107 Sum_probs=123.3
Q ss_pred HHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHHHH-HHHHHHHHHHhhccchh
Q 027608 28 MEVIKAAMSKGIN-KYVIIVYSDALSSLFFLFCSFLFHRSERPQL--TFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPT 103 (221)
Q Consensus 28 ~v~~K~~~~~~~~-p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~g-~~~~~~~~~gl~~t~a~ 103 (221)
.+..|.+++. +| |+.+..+|++++.++...+.... .+++++. .+++++.++.+|+++ .. +...+.|+++++++
T Consensus 65 ~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~llp~gl~~~~~-~~~~~~sl~~~svs 141 (350)
T PTZ00343 65 VVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWATG-FRKIPRIKSLKLFLKNFLPQGLCHLFV-HFGAVISMGLGAVS 141 (350)
T ss_pred HHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccHH
Confidence 4558888875 99 99999999999987765543221 2222333 345788999999999 55 45577999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHH
Q 027608 104 LSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWIL 183 (221)
Q Consensus 104 ~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (221)
.++++.++.|++++++++++++||++++ ++.|++++++|+.+.+. ++ .+. ...
T Consensus 142 ~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~~------------------~~~-~~~ 194 (350)
T PTZ00343 142 FTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--KE------------------LHF-TWL 194 (350)
T ss_pred HHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--cc------------------chh-HHH
Confidence 9999999999999999999999999865 68999999999998752 10 112 357
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccc
Q 027608 184 GGFFLAAEAFMNSAWFILQVWPFNFLF 210 (221)
Q Consensus 184 G~ll~l~aa~~~a~y~i~~k~~~~~~~ 210 (221)
|+++.++|+++|+.|+++.|+..++++
T Consensus 195 G~~~~l~s~~~~a~~~i~~k~~~~~~~ 221 (350)
T PTZ00343 195 AFWCAMLSNLGSSLRSIFAKKTMKNKS 221 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999998765
No 11
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.74 E-value=1.6e-16 Score=136.48 Aligned_cols=169 Identities=11% Similarity=-0.017 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhh-hCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 027608 14 SVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFH-RSERPQLTFSILCSFFLLSVFG-CSSQI 91 (221)
Q Consensus 14 ~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~lg~~g-~~~~~ 91 (221)
.+..+.++++|+...+..|...++ -++. .++++..+++++.|+...+. +..+++.+ ++++.....+.++ ..++.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 78 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLP-ATFWLLLAISAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcc-hhhHHHHHHHHHHHHHHHH
Confidence 356678899999999999976554 3443 47777888888888776532 22223233 4444555566666 99999
Q ss_pred HHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCC
Q 027608 92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR 171 (221)
Q Consensus 92 ~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~ 171 (221)
+++.|++++++++++.+.++.|+++.++++++++||++++ +++|+.+++.|+.++... +.
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~~-~~------------- 138 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGLS-RF------------- 138 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhcc-cc-------------
Confidence 9999999999999999999999999999999999999875 689999999999887532 10
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 027608 172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFYK 212 (221)
Q Consensus 172 ~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~~~ 212 (221)
... ...|+.+.++++++|++|+++.|+..++.++.
T Consensus 139 -----~~~-~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~ 173 (281)
T TIGR03340 139 -----AQH-RRKAYAWALAAALGTAIYSLSDKAAALGVPAF 173 (281)
T ss_pred -----ccc-chhHHHHHHHHHHHHHHhhhhccccccchhcc
Confidence 011 13588899999999999999998876666543
No 12
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.69 E-value=3.1e-16 Score=117.28 Aligned_cols=124 Identities=18% Similarity=0.334 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Q 027608 22 LAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYS 100 (221)
Q Consensus 22 ~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~~~~~~~~gl~~t 100 (221)
++||.+.++.|...++ .||....++|+..+++ ++++....+++...+.+.+++......|.++ ..++.+++.+++++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 4799999999998875 9999999999999998 6666555444333456778888999999998 99999999999999
Q ss_pred chhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608 101 SPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (221)
Q Consensus 101 ~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 153 (221)
+++.++.+.++.|+++.++++++++|+++++ +++|+++.+.|+++++
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875 6999999999998764
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.66 E-value=2.3e-14 Score=121.58 Aligned_cols=174 Identities=18% Similarity=0.211 Sum_probs=133.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HH
Q 027608 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS 88 (221)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~ 88 (221)
........+...+.|+.+....|...+...++....+.|+..+.++..+.... ++....+ ..+++++..+.+.++ ..
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGLRP-ALRPWLLLLLLALLGLAL 82 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hcccccc-cccchHHHHHHHHHHHHH
Confidence 34566777788899999999999987643677777777999998885444321 1111111 122245667777777 99
Q ss_pred HHHHHHHHhhccchhHHHHhhhhhHHHHHHHHH-HHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCC
Q 027608 89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAI-IFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHS 167 (221)
Q Consensus 89 ~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~-l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~ 167 (221)
++.+++.++++++++.++.+.++.|+++.+++. ++++||++++ ++.|+++++.|++++...++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~--------- 147 (292)
T COG0697 83 PFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGG--------- 147 (292)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCc---------
Confidence 999999999999999999999999999999997 7779999865 689999999999988632110
Q ss_pred CCCCcccCCCCch-hHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 027608 168 GSPRRLLLSPQLS-WILGGFFLAAEAFMNSAWFILQVWPFNFLFY 211 (221)
Q Consensus 168 ~~~~~~~~~~~~~-~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~~ 211 (221)
..+ ...|+++.++++++|++|.+..|+.. +.++
T Consensus 148 ----------~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~ 181 (292)
T COG0697 148 ----------GGILSLLGLLLALAAALLWALYTALVKRLS-RLGP 181 (292)
T ss_pred ----------chhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCh
Confidence 111 46899999999999999999999887 4444
No 14
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.66 E-value=1.4e-14 Score=127.12 Aligned_cols=173 Identities=17% Similarity=0.153 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhhC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027608 21 LLAQVSNMEVIKAAMSKGIN-KYVIIVYSDALSSLFFLFCSFLFHRS-ERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQ 98 (221)
Q Consensus 21 ~~~wg~~~v~~K~~~~~~~~-p~~l~~~R~~~a~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~ 98 (221)
+++=.++...+....+.+.+ |..-.+.-+..-.++..+...+++++ +..+..+++|++++++|++-+..+++.+.|++
T Consensus 22 sl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~ 101 (334)
T PF06027_consen 22 SLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQ 101 (334)
T ss_pred HHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555554444444 55555555554455555554443222 22223356778888899877999999999999
Q ss_pred ccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCC
Q 027608 99 YSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQ 178 (221)
Q Consensus 99 ~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~ 178 (221)
||+.+.+.++..+.-.++++++++++|||.++. |++|++++++|+.+++..+.... +.+.++
T Consensus 102 yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~------------~~~~~~ 163 (334)
T PF06027_consen 102 YTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSG------------SDSSSG 163 (334)
T ss_pred cccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeeccccc------------ccCCCC
Confidence 999999999999988899999999999999875 79999999999988875543210 011234
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 027608 179 LSWILGGFFLAAEAFMNSAWFILQVWPFNFLFY 211 (221)
Q Consensus 179 ~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~~ 211 (221)
++...||++++++++.||+|+++++++.+++|.
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~ 196 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVKKAPR 196 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 566899999999999999999999999998764
No 15
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.48 E-value=2.4e-12 Score=108.69 Aligned_cols=132 Identities=13% Similarity=0.118 Sum_probs=111.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH
Q 027608 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGIN--KYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG 86 (221)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~--p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g 86 (221)
.+..+....++++++|+.+.+..|...++ .+ +..+..+|+.++.+++.|+.+..++. +..+.+++..++.+|.++
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 201 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIG 201 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHH
Confidence 34568889999999999999999998753 66 44566678999999999887653322 234567888889999999
Q ss_pred -HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhH
Q 027608 87 -CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGA 149 (221)
Q Consensus 87 -~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv 149 (221)
...+.+++.++++++++.++.+.++.|+++.++++++++|+++.+ +++|..+.+.|+
T Consensus 202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~ 259 (260)
T TIGR00950 202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999865 689999999886
No 16
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.48 E-value=4.2e-13 Score=100.89 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCC-CCCHHHHHHHHHHHHHHHHHHHH
Q 027608 14 SVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERP-QLTFSILCSFFLLSVFGCSSQIF 92 (221)
Q Consensus 14 ~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~-~~~~~~~~~~~~lg~~g~~~~~~ 92 (221)
..+.++++++||...++.|++++ ++||-.-++.|-.+...++..+++..++.+.+ ..+.|.|..+.+-|+-+...-.+
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~ 83 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLL 83 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHH
Confidence 46778899999999999999997 59999999999999888888777654432221 24678888888888766888999
Q ss_pred HHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608 93 SFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (221)
Q Consensus 93 ~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 153 (221)
||.++|.-+++...-+-.+.|+++.++++++++||+|.+ +++|+++..+|+++++
T Consensus 84 Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs 138 (140)
T COG2510 84 YFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999875 6899999999998764
No 17
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.46 E-value=4.9e-12 Score=109.52 Aligned_cols=178 Identities=13% Similarity=0.032 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHHHHHHHH
Q 027608 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLT-FSILCSFFLLSVFGCSSQI 91 (221)
Q Consensus 13 ~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~g~~~~~ 91 (221)
+++..++++++||.+.+..|... +.++.++. |..++.+++..+.... |+ ++.+ ++.+..-++-|.+-...|.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~-~~--~~~~~~~~~~~g~l~G~~w~ig~~ 74 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIF-VL--PEFWALSIFLVGLLSGAFWALGQI 74 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHH-hC--CcccccHHHHHHHHHHHHHHhhhh
Confidence 35677889999999999999853 68887775 7888887776654442 22 1122 3333333344444477889
Q ss_pred HHHHHhhccchhHHHHhhh-hhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCC
Q 027608 92 FSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSP 170 (221)
Q Consensus 92 ~~~~gl~~t~a~~as~i~~-~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~ 170 (221)
+++.++++++.+.|-.+.+ +.|++..+.+.+++|||.+.++. ...++|+++.++|++++...++++.
T Consensus 75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~--~~~~~g~~l~l~G~~l~~~~~~~~~---------- 142 (290)
T TIGR00776 75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQT--LLGLLALILIIIGVYLTSRSKDKSA---------- 142 (290)
T ss_pred hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHH--HHHHHHHHHHHHhHheEEecccccc----------
Confidence 9999999999999988887 88999999999999999876521 1228899999999988753321110
Q ss_pred CcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 027608 171 RRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFYKAQ 214 (221)
Q Consensus 171 ~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~~~~~ 214 (221)
.+.+..+...|.++.++++++|+.|.+..|.. ++++...
T Consensus 143 ---~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~~~~~ 181 (290)
T TIGR00776 143 ---GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GVDGLSV 181 (290)
T ss_pred ---ccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CCCccee
Confidence 00000233579999999999999999999876 3666654
No 18
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.35 E-value=5.7e-12 Score=94.21 Aligned_cols=103 Identities=21% Similarity=0.338 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC--CCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHH
Q 027608 46 VYSDALSSLFFLFCSFLFHRSE--RPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII 122 (221)
Q Consensus 46 ~~R~~~a~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~lg~~g-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l 122 (221)
.+|+..+.+++..+...+++.+ .+..++|++.+....|.++ ..++.++++|+++++ +..+.+.++.|+++.+++.+
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 5799999998888776633211 1223345667777889988 799999999999999 48889999999999999999
Q ss_pred HhhhccccccccchhHHHHHHHHHHhHHHhhhc
Q 027608 123 FRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY 155 (221)
Q Consensus 123 ~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~ 155 (221)
++|||++.+ ++.|++++++|++++...
T Consensus 81 ~~~er~~~~------~~~a~~l~~~Gv~li~~~ 107 (113)
T PF13536_consen 81 FFKERLSPR------RWLAILLILIGVILIAWS 107 (113)
T ss_pred HhcCCCCHH------HHHHHHHHHHHHHHHhhh
Confidence 999999865 689999999999998743
No 19
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.31 E-value=1.5e-10 Score=100.10 Aligned_cols=135 Identities=13% Similarity=0.067 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HHH
Q 027608 11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSS 89 (221)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~~ 89 (221)
..+.+..+.++++|+.+.+..|...+ +.+|..... -..++++++.|+...... ....+...+...+.+|+++ .+.
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~-~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~~ 222 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGA-EHGPATVAI-GSLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTALP 222 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHH-HHHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999765 478887754 446667777777654322 1223445566677899999 999
Q ss_pred HHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhc
Q 027608 90 QIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY 155 (221)
Q Consensus 90 ~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~ 155 (221)
+.++++++++.+|+.++.+.++.|+++.++++++++|+++.. +++|.++.+.|+++....
T Consensus 223 ~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 223 YSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999875 699999999999887643
No 20
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.30 E-value=1.9e-10 Score=99.49 Aligned_cols=136 Identities=15% Similarity=0.027 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HHH
Q 027608 11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSS 89 (221)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~~ 89 (221)
..+.+..++++++|+...+..|... . -++....+++..++++++.++....+.......+.++|..+.++|+++ .+.
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~ 226 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA 226 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999853 2 345667788999999888887654332211113567888899999999 999
Q ss_pred HHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhh
Q 027608 90 QIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (221)
Q Consensus 90 ~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~ 154 (221)
+.++++++++.++++++++.++.|++++++++++++|+++.. +++|.++.+.|++++..
T Consensus 227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 227 ISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999875 69999999999988753
No 21
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.21 E-value=1.4e-09 Score=92.63 Aligned_cols=163 Identities=15% Similarity=0.077 Sum_probs=125.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCC-CC--CCHHHHHHHHHHHHHH
Q 027608 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER-PQ--LTFSILCSFFLLSVFG 86 (221)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~-~~--~~~~~~~~~~~lg~~g 86 (221)
..++++..+.+.++||..+...|.. + ..|+.++...|..-+..+++.+....++.+. .+ .++|.+..+.+.+.+-
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3578899999999999999999974 5 4999999999999998887776554333221 11 1234455555556655
Q ss_pred HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCC
Q 027608 87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH 166 (221)
Q Consensus 87 ~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~ 166 (221)
..+-..|.|+.++-..-.+|+=.+++|++.++++.+++|||+++ .|++.++++.+||.......|+
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~------~Q~iAV~lA~~GV~~~~~~~g~-------- 148 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSR------LQWIAVGLAAAGVLIQTWLLGS-------- 148 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccH------HHHHHHHHHHHHHHHHHHHcCC--------
Confidence 88888999999999999999999999999999999999999975 5799999999999887654331
Q ss_pred CCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 027608 167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWP 205 (221)
Q Consensus 167 ~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~ 205 (221)
..| . .+.=+++|+.|-.+-|++
T Consensus 149 ------------lpw-v----al~la~sf~~Ygl~RK~~ 170 (293)
T COG2962 149 ------------LPW-V----ALALALSFGLYGLLRKKL 170 (293)
T ss_pred ------------CcH-H----HHHHHHHHHHHHHHHHhc
Confidence 222 1 234578999999884443
No 22
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.19 E-value=1e-09 Score=94.99 Aligned_cols=132 Identities=16% Similarity=0.110 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHH
Q 027608 11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQ 90 (221)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~ 90 (221)
..+.++.+.++++|+.+.+..|...+ +.+|..... ..+.+.+.+.....+ ......+.+.+..+++.|+...+.+
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~~---~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~t~~~~ 229 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLFF---ILTALALWIKYFLSP-QPAMVFSLPAIIKLLLAAAAMGFGY 229 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHHH---HHHHHHHHHHHHHhc-CccccCCHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999999999654 578876532 334444444333322 1112345677777777775338899
Q ss_pred HHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608 91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (221)
Q Consensus 91 ~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 153 (221)
.++++++++++|+.++.+.++.|++..++++++++|+++.. +++|.++.+.|+++..
T Consensus 230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHh
Confidence 99999999999999999999999999999999999999875 6899999999998765
No 23
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.19 E-value=1.4e-09 Score=96.95 Aligned_cols=137 Identities=11% Similarity=0.119 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHhhhCCC----CCCCHHHHHHHHHHHHHHH
Q 027608 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINK-YVIIVYSDALSSLFFLFCSFLFHRSER----PQLTFSILCSFFLLSVFGC 87 (221)
Q Consensus 13 ~~l~l~~~~~~wg~~~v~~K~~~~~~~~p-~~l~~~R~~~a~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~lg~~g~ 87 (221)
+...++.++++|+.+.+..|..... .|| ....++...++++.+.+.....++... ...+.. ...++..|+...
T Consensus 190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~t~ 267 (358)
T PLN00411 190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAIITS 267 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHHHH
Confidence 5677888999999999999987664 654 466777777777666655554433211 111222 223445555446
Q ss_pred HHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccC
Q 027608 88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKG 157 (221)
Q Consensus 88 ~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g 157 (221)
+.+.++++++++.+|+.++++.++.|++++++++++++|++++. +++|.++.+.|+++....+.
T Consensus 268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~~~ 331 (358)
T PLN00411 268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWGKA 331 (358)
T ss_pred HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhhhh
Confidence 67889999999999999999999999999999999999999875 68999999999998875443
No 24
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.13 E-value=5.2e-09 Score=90.74 Aligned_cols=136 Identities=14% Similarity=0.141 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHHHHHHHHHHhhhCC-----CCCCCHHHHHHHHHH
Q 027608 11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINK---YVIIVYSDALSSLFFLFCSFLFHRSE-----RPQLTFSILCSFFLL 82 (221)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p---~~l~~~R~~~a~l~l~~~~~~~~~~~-----~~~~~~~~~~~~~~l 82 (221)
..+.++.+.++++|+.+.+..|...++ .++ .....+-..++.+.+.+.....+... ....+.++|..++.+
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 220 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSH-STRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence 457888999999999999999986543 332 23334444444443333332222211 123456788899999
Q ss_pred HHHH-HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608 83 SVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (221)
Q Consensus 83 g~~g-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 153 (221)
|+++ .+.+.+++.++++.++++++.+..+.|++..++++++++|+++.. +++|.++.++|+.+..
T Consensus 221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence 9999 999999999999999999999999999999999999999999875 6899999999998765
No 25
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.11 E-value=7.1e-09 Score=86.69 Aligned_cols=159 Identities=11% Similarity=0.104 Sum_probs=120.6
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 027608 13 PSVGMVIVLL-AQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQI 91 (221)
Q Consensus 13 ~~l~l~~~~~-~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~ 91 (221)
+++.+..++. +.++. -+.|..... +.|...+.+|..+++++++++ ++.+ +.+.+++++..++..|..-..-|.
T Consensus 13 p~~~ll~amvsiq~Ga-s~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l--~RPw--r~r~~~~~~~~~~~yGvsLg~MNl 86 (292)
T COG5006 13 PILALLVAMVSIQSGA-SFAKSLFPL-VGAAGVTALRLAIAALILLAL--FRPW--RRRLSKPQRLALLAYGVSLGGMNL 86 (292)
T ss_pred cHHHHHHHHHHHHhhH-HHHHHHccc-cChhhHHHHHHHHHHHHHHHH--hhHH--HhccChhhhHHHHHHHHHHHHHHH
Confidence 4666655543 44444 467777765 999999999999999999876 3332 234678899999999987677788
Q ss_pred HHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCC
Q 027608 92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR 171 (221)
Q Consensus 92 ~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~ 171 (221)
+||.+++..+-+.+..+..+-|+.+.+++- .| .+..+-+.+++.|..++. ..+++.
T Consensus 87 ~FY~si~riPlGiAVAiEF~GPL~vA~~~s----Rr--------~~d~vwvaLAvlGi~lL~-p~~~~~----------- 142 (292)
T COG5006 87 LFYLSIERIPLGIAVAIEFTGPLAVALLSS----RR--------LRDFVWVALAVLGIWLLL-PLGQSV----------- 142 (292)
T ss_pred HHHHHHHhccchhhhhhhhccHHHHHHHhc----cc--------hhhHHHHHHHHHHHHhhe-eccCCc-----------
Confidence 999999999999999999999999876641 11 235677889999998875 223211
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027608 172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFN 207 (221)
Q Consensus 172 ~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~ 207 (221)
...| ..|..+.+++..||+.|.+..||.-+
T Consensus 143 -----~~lD-p~Gv~~Al~AG~~Wa~YIv~G~r~g~ 172 (292)
T COG5006 143 -----WSLD-PVGVALALGAGACWALYIVLGQRAGR 172 (292)
T ss_pred -----CcCC-HHHHHHHHHHhHHHHHHHHHcchhcc
Confidence 1222 58999999999999999999998865
No 26
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.08 E-value=1.6e-09 Score=93.98 Aligned_cols=140 Identities=16% Similarity=0.122 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC---------CHHHHHH-
Q 027608 10 AALPSVGMVIVLLAQVSNMEVIKAAMSK-GINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL---------TFSILCS- 78 (221)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~v~~K~~~~~-~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~---------~~~~~~~- 78 (221)
+..+.+..++++++|+...+..|...++ ++||..+.++....+++.++|+....+....... .......
T Consensus 143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (302)
T TIGR00817 143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV 222 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence 3558888999999999999999997651 4899999999999999999998765432110000 0011111
Q ss_pred HHHHHHHH-HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhc
Q 027608 79 FFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY 155 (221)
Q Consensus 79 ~~~lg~~g-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~ 155 (221)
.+..+... ...+.+++.++++++|+.+++..++.|+++.++++++++|+++.+ +++|.++.++|+.+....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~~ 294 (302)
T TIGR00817 223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSRV 294 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHHH
Confidence 22233323 444567788999999999999999999999999999999999875 689999999999887643
No 27
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.07 E-value=2e-08 Score=87.33 Aligned_cols=165 Identities=15% Similarity=0.098 Sum_probs=122.9
Q ss_pred HHHHHHHh-CCCC--hHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH
Q 027608 29 EVIKAAMS-KGIN--KYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLS 105 (221)
Q Consensus 29 v~~K~~~~-~~~~--p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~a 105 (221)
+..+.... .... |..+++.++....++-.+.....+ .++.+++.++.++..+++..+...+.+.+++|.|...-
T Consensus 17 ~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~ 93 (303)
T PF08449_consen 17 ILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK---FPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQ 93 (303)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc---ccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence 44444333 2344 889999999998877766543322 12223445667788888778889999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHHHH
Q 027608 106 TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGG 185 (221)
Q Consensus 106 s~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 185 (221)
.++-...|+.+++++.+++++|.+++ |+.++++..+|+++....+..... ..+....++..|+
T Consensus 94 ~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~-----------~~~~~~~~~~~G~ 156 (303)
T PF08449_consen 94 IVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSS-----------SSNSSSFSSALGI 156 (303)
T ss_pred HHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeeccccccc-----------ccccccccchhHH
Confidence 99999999999999999999998865 689999999999887654332110 0111122234599
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccc
Q 027608 186 FFLAAEAFMNSAWFILQVWPFNFLFYKA 213 (221)
Q Consensus 186 ll~l~aa~~~a~y~i~~k~~~~~~~~~~ 213 (221)
++++++.++-+.+.++|+|+.++|+...
T Consensus 157 ~ll~~sl~~~a~~~~~qe~~~~~~~~~~ 184 (303)
T PF08449_consen 157 ILLLLSLLLDAFTGVYQEKLFKKYGKSP 184 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 9999999999999999999999887643
No 28
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.05 E-value=8.3e-10 Score=96.67 Aligned_cols=113 Identities=20% Similarity=0.239 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCC
Q 027608 79 FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP 158 (221)
Q Consensus 79 ~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~ 158 (221)
.+....+-+..++.++.++++|+++..+++.++.-+||..++.++..||+|+. |.+++.++++|+++++..+..
T Consensus 162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~ 235 (416)
T KOG2765|consen 162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSK 235 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecccc
Confidence 34444545899999999999999999999999999999999999999999875 799999999999988744221
Q ss_pred CCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 027608 159 PLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLF 210 (221)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~ 210 (221)
. .++.......+|+++.+.+|+.||+|+++.||-..+..
T Consensus 236 ~-------------~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg 274 (416)
T KOG2765|consen 236 Q-------------NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEG 274 (416)
T ss_pred c-------------cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 1 01223445579999999999999999999998887764
No 29
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.99 E-value=3.6e-09 Score=90.90 Aligned_cols=133 Identities=15% Similarity=0.038 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH
Q 027608 11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKY----VIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG 86 (221)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~----~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g 86 (221)
.++....+.++++|+.+.+..|...+ +.+|. ....+.+.+.++.+.+.....+++. ...+...+..+...+.+.
T Consensus 143 ~~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 220 (281)
T TIGR03340 143 RKAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS-MFPYARQILPSATLGGLM 220 (281)
T ss_pred hhHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHHHHHHHHHH
Confidence 34566778889999999999987533 34443 2223333333222222221111111 111223344556677777
Q ss_pred -HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHH
Q 027608 87 -CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (221)
Q Consensus 87 -~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l 151 (221)
.+.+.++++++++.+++.++.+.++.|++..++++++++|++++. +++|.++.++|+.+
T Consensus 221 s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l 280 (281)
T TIGR03340 221 IGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence 889999999999999999999999999999999999999999875 68999999999875
No 30
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.92 E-value=9.3e-08 Score=74.35 Aligned_cols=132 Identities=17% Similarity=0.259 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhhCCC-C---CC-------CHHHH
Q 027608 14 SVGMVIVLLAQVSNMEVIKAAMSK------GINKYVIIVYSDALSSLFFLFCSFLFHRSER-P---QL-------TFSIL 76 (221)
Q Consensus 14 ~l~l~~~~~~wg~~~v~~K~~~~~------~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~-~---~~-------~~~~~ 76 (221)
+...+.+.++-+...+..|..++. ..+|.++..+-...+.++++|..+..++... + .. +.+.+
T Consensus 2 ~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 81 (153)
T PF03151_consen 2 FILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFI 81 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHH
Confidence 567788899999999999988766 6899999999999999999998877654331 0 01 12334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHH
Q 027608 77 CSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (221)
Q Consensus 77 ~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l 151 (221)
..++..|++++..+...+.-+++++|...++..+.-.+++.+.++++++|+++.+ +++|+++++.|+++
T Consensus 82 ~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 82 FLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence 4455566666899999999999999999999999999999999999999999875 69999999999864
No 31
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.92 E-value=9.5e-08 Score=84.88 Aligned_cols=138 Identities=16% Similarity=0.094 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhhCCCC--------CC---C
Q 027608 10 AALPSVGMVIVLLAQVSNMEVIKAAMSK------GINKYVIIVYSDALSSLFFLFCSFLFHRSERP--------QL---T 72 (221)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~v~~K~~~~~------~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~--------~~---~ 72 (221)
++.+.+..++++++|+...+..|..+++ .+++..+..+-..+++++++|+....+..... .. .
T Consensus 192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~ 271 (350)
T PTZ00343 192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT 271 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence 3568889999999999999999998753 25677777777889999999987644321100 00 1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHH
Q 027608 73 FSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (221)
Q Consensus 73 ~~~~~~~~~lg~~g-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l 151 (221)
.......++.+.+. .+++.+.+.++++++|.++++..++-|+++.++++++++|+++.. +++|.++.+.|+++
T Consensus 272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~l 345 (350)
T PTZ00343 272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALL 345 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHH
Confidence 11111222223223 444555557999999999999999999999999999999999875 69999999999987
Q ss_pred hh
Q 027608 152 VT 153 (221)
Q Consensus 152 i~ 153 (221)
-.
T Consensus 346 Ys 347 (350)
T PTZ00343 346 YS 347 (350)
T ss_pred Hh
Confidence 54
No 32
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.92 E-value=2.9e-10 Score=95.69 Aligned_cols=178 Identities=13% Similarity=0.104 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 027608 14 SVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFS 93 (221)
Q Consensus 14 ~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~ 93 (221)
..++.++ ..+.++.++.+..++ .+|.+..-.|+..-.++..|..++......-+...| +++++-|+.|+......
T Consensus 40 l~l~~vs-~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R--~~LiLRg~mG~tgvmlm 114 (346)
T KOG4510|consen 40 LLLLTVS-YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR--KWLILRGFMGFTGVMLM 114 (346)
T ss_pred ceehhhH-HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE--EEEEeehhhhhhHHHHH
Confidence 3344444 777777777777653 799999999977777766665544222111111122 25667788884445566
Q ss_pred HHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcc
Q 027608 94 FVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRL 173 (221)
Q Consensus 94 ~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~ 173 (221)
|++++|.+-+.|++|+...|+||.++++.++|||.|. .+..|..+.+.|+++++.. ++-+..+. .+.
T Consensus 115 yya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~------~eaL~s~itl~GVVLIvRP---pFlFG~~t----~g~ 181 (346)
T KOG4510|consen 115 YYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTK------FEALGSLITLLGVVLIVRP---PFLFGDTT----EGE 181 (346)
T ss_pred HHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcH------HHHHHHHHhhheEEEEecC---CcccCCCc----ccc
Confidence 7799999999999999999999999999999999874 5789999999999998732 22111100 000
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 027608 174 LLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFL 209 (221)
Q Consensus 174 ~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~ 209 (221)
..+..+....|.+..+.+++.-|.-.|+-|++=|+.
T Consensus 182 ~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~ 217 (346)
T KOG4510|consen 182 DSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNA 217 (346)
T ss_pred ccccccccCCchHHHHHhHhhhhhHHHHHHHhhccc
Confidence 011112334577777777777666666667765543
No 33
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.79 E-value=2.8e-07 Score=79.90 Aligned_cols=131 Identities=9% Similarity=-0.004 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHhhhCC-CCCCCHHHHHHHHHHHHHHHHHHHH
Q 027608 15 VGMVIVLLAQVSNMEVIKAAMSKG-INKYVIIVYSDALSSLFFLFCSFLFHRSE-RPQLTFSILCSFFLLSVFGCSSQIF 92 (221)
Q Consensus 15 l~l~~~~~~wg~~~v~~K~~~~~~-~~p~~l~~~R~~~a~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~g~~~~~~ 92 (221)
...+.++++|+.+.+..|....+. .++.....+-..++...+.++. ..... ....+...+..+...|+...+.+.+
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~ 229 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA--DSSTSHMGQNPMSLNLLLIAAGIVTTVPLLC 229 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc--cCCcccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 346678899999999998853221 2223333334444433332221 10000 0111222333444456544888999
Q ss_pred HHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608 93 SFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (221)
Q Consensus 93 ~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 153 (221)
++.++++.+|+.++.+.++.|++..++++++++|+++.. +++|.++.++|+.++.
T Consensus 230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875 6899999988887765
No 34
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.79 E-value=5.4e-07 Score=76.27 Aligned_cols=132 Identities=14% Similarity=0.171 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HH
Q 027608 11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIV-YSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS 88 (221)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~-~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~ 88 (221)
..+....+.+.++|+.+.+..|... ..++..... +.+..+.....+.. ..... .+.+.+++..+...|+++ ..
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~~~~i 227 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFF--LSGFG-APILSRAWLLLLYLGVFSTGL 227 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHH--hcccc-ccCCHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999765 367777776 44442233333322 11111 234577888899999999 78
Q ss_pred HHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608 89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (221)
Q Consensus 89 ~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 153 (221)
.+.+++.+++..+++.++.+..+.|++..++++++++|+++.+ +++|..+.+.|+.+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~ 286 (292)
T COG0697 228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999865 6899999999998875
No 35
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.71 E-value=3.7e-07 Score=79.04 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH---HHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHH
Q 027608 11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDA---LSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGC 87 (221)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~---~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~ 87 (221)
.++....+++.+.++.+.+..|.. +.||.+..+.... +++.++.+.. + + .++. ..+.....++.|++-.
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~--~-~-~~~~-~~~~~~~~~~~Gi~~~ 222 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH--I-L-AKPL-KKYAILLNILPGLMWG 222 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH--h-c-ccch-HHHHHHHHHHHHHHHH
Confidence 678999999999999999999964 3899988655554 3343333321 1 1 1222 2333444455777667
Q ss_pred HHHHHHHHHhh-ccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608 88 SSQIFSFVGIQ-YSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (221)
Q Consensus 88 ~~~~~~~~gl~-~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 153 (221)
..+.+|+.+.+ +.+++.++++.+..|+...+.+++++||+.++++. +.-.+|.++.+.|+.++.
T Consensus 223 ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~--~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 223 IGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREM--IAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCccee--ehhHHHHHHHHHHHHHHh
Confidence 78889999999 99999999999999999999999999999988752 122389999999998764
No 36
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.57 E-value=8.1e-07 Score=66.29 Aligned_cols=68 Identities=16% Similarity=0.146 Sum_probs=60.9
Q ss_pred HHHHHHH-HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608 80 FLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (221)
Q Consensus 80 ~~lg~~g-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 153 (221)
...++++ ...+.++..++++.+.+.|..+.++.|+++.++++++++||++++ |++|+.+.++|++++.
T Consensus 40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 3445567 888999999999999999999999999999999999999999875 6999999999998874
No 37
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.54 E-value=2.8e-06 Score=71.97 Aligned_cols=129 Identities=14% Similarity=0.099 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHH
Q 027608 72 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (221)
Q Consensus 72 ~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l 151 (221)
++|+..++.+=+++-++.+.+.+.++++.+|+.-.++.++-.++|++++++++|+|++.+ ||.++.+.+.|+.+
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l 86 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL 86 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence 467777777777777888999999999999999999999999999999999999999865 58999999999988
Q ss_pred hhhccCCCCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 027608 152 VTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLF 210 (221)
Q Consensus 152 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~ 210 (221)
+...+....+. ++.. ..+.+....+...|.+++++++++=++-.|+..|++|+.+
T Consensus 87 v~~~~~~~~~~-~~~~---~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~ 141 (244)
T PF04142_consen 87 VQLSSSQSSDN-SSSS---SVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN 141 (244)
T ss_pred eecCCcccccc-cccc---ccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 75332211000 0000 0000112344578999999999999999999999999865
No 38
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.48 E-value=6.8e-06 Score=62.95 Aligned_cols=117 Identities=16% Similarity=0.190 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HHHH
Q 027608 12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQ 90 (221)
Q Consensus 12 ~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~~~ 90 (221)
.+|+.++.+.++=+...++-|.++++ .++...... . ...+. .. ..| ...+++|+.+ .+.+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~~~~~-------~~--~~p-------~~~i~lgl~~~~la~ 62 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-IAALL-------AF--GLA-------LRAVLLGLAGYALSM 62 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-HHHHH-------HH--hcc-------HHHHHHHHHHHHHHH
Confidence 36777888888888889999998864 444332221 1 10000 00 011 1257788888 9999
Q ss_pred HHHHHHhhccchhHHHHhhhhhHHHHHHHHHH--HhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608 91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII--FRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (221)
Q Consensus 91 ~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l--~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 153 (221)
.++..+++..+++.|.-+.+..|.++.+.++. +++|++|++ |++|+++.++|++++.
T Consensus 63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 99999999999999999999999888888885 799999975 6999999999999986
No 39
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.48 E-value=6.3e-05 Score=66.04 Aligned_cols=182 Identities=9% Similarity=0.062 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHHhhhC---CC-CCC------CHHHHHH
Q 027608 12 LPSVGMVIVLLAQVSNMEVIKAAMSKG---INKYVIIVYSDALSSLFFLFCSFLFHRS---ER-PQL------TFSILCS 78 (221)
Q Consensus 12 ~~~l~l~~~~~~wg~~~v~~K~~~~~~---~~p~~l~~~R~~~a~l~l~~~~~~~~~~---~~-~~~------~~~~~~~ 78 (221)
..++.++...+.+++.....|..-..+ +.|.+..+.--.+-.++.....+..+|+ +. +.+ .+++...
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 456778888999999999999987655 6788888877777766665555443222 11 111 2344555
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCC
Q 027608 79 FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP 158 (221)
Q Consensus 79 ~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~ 158 (221)
+.+=+++-++.+.+++.++.+.+|++-.+..++--+.|+++..+++++|++++ ||..+++.++|+.++......
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~ 168 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLS 168 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCC
Confidence 55555555777779999999999999999999999999999999999999876 589999999999988632221
Q ss_pred CCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 027608 159 PLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFL 209 (221)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~ 209 (221)
+-+ +.+.....+...|...++.++++=++-.++..|++|+-
T Consensus 169 ~~~----------a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s 209 (345)
T KOG2234|consen 169 PTG----------AKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGS 209 (345)
T ss_pred CCC----------ccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 100 00122345667999999999999999999999998763
No 40
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.41 E-value=8.4e-06 Score=68.52 Aligned_cols=132 Identities=13% Similarity=0.025 Sum_probs=104.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HH
Q 027608 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS 88 (221)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~ 88 (221)
+..+..+.+.+..+|+.+-+..|.+-+. .+--.=..+-+.+|+++.+|+....... .-.+.+-...-+..|+++ .+
T Consensus 146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~ag~--~l~~p~ll~laLgvavlSSal 222 (292)
T COG5006 146 DPVGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQAGP--ALFSPSLLPLALGVAVLSSAL 222 (292)
T ss_pred CHHHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhhcch--hhcChHHHHHHHHHHHHhccc
Confidence 3456777888999999999999987543 4445566788999999999997642221 113445555567789999 99
Q ss_pred HHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHH
Q 027608 89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF 150 (221)
Q Consensus 89 ~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~ 150 (221)
.+.+...+++..++..-+++.++.|.+..+.++++++|.+|..| +.|+...+++..
T Consensus 223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q------wlaI~~ViaAsa 278 (292)
T COG5006 223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ------WLAIAAVIAASA 278 (292)
T ss_pred chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999864 677766666553
No 41
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.21 E-value=2.5e-06 Score=69.30 Aligned_cols=100 Identities=20% Similarity=0.277 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCC
Q 027608 87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH 166 (221)
Q Consensus 87 ~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~ 166 (221)
++.++.|..+++..+|+.++.+....-.|+.+++++.++||+.. .|++..++++.|++.+...++
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~------~kIlaailAI~GiVmiay~DN--------- 128 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMG------FKILAAILAIGGIVMIAYADN--------- 128 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhh------hhHHHHHHHhCcEEEEEeccc---------
Confidence 77899999999999999999999999999999999999999975 479999999999988764322
Q ss_pred CCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 027608 167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFY 211 (221)
Q Consensus 167 ~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~~ 211 (221)
...+.+.|....+++++.-|+|-++.|+...+-+-
T Consensus 129 ----------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~ 163 (290)
T KOG4314|consen 129 ----------EHADEIIGIACAVGSAFMAALYKVLFKMFIGNANF 163 (290)
T ss_pred ----------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 33456799999999999999999999988765443
No 42
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.18 E-value=5.5e-06 Score=72.45 Aligned_cols=151 Identities=14% Similarity=0.117 Sum_probs=114.6
Q ss_pred HHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Q 027608 30 VIKAAMS--KGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTA 107 (221)
Q Consensus 30 ~~K~~~~--~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~ 107 (221)
..|..++ +.--|..++..++..+.+.++.....+..+..+..++..+..++-+|++.++...+-+.++++.+.+..-.
T Consensus 35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~ 114 (316)
T KOG1441|consen 35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQT 114 (316)
T ss_pred eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHH
Confidence 4677776 33358899999888888877665443322222212334567788888888888889999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHHHHHH
Q 027608 108 MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFF 187 (221)
Q Consensus 108 i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll 187 (221)
+=+++|.++.++++++.+|+.+++.+ ..++....|+.+.+.. ..+.| +.|...
T Consensus 115 iKa~~P~~tvl~~~~~~~~~~s~~~~------lsL~piv~GV~ias~~--------------------e~~fn-~~G~i~ 167 (316)
T KOG1441|consen 115 IKALMPPFTVLLSVLLLGKTYSSMTY------LSLLPIVFGVAIASVT--------------------ELSFN-LFGFIS 167 (316)
T ss_pred HHhhcchhHHHHHHHHhCCCCcceEE------EEEEEeeeeEEEeeec--------------------ccccc-HHHHHH
Confidence 99999999999999999999987653 4455666777655421 01223 589999
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 027608 188 LAAEAFMNSAWFILQVWPFN 207 (221)
Q Consensus 188 ~l~aa~~~a~y~i~~k~~~~ 207 (221)
.+.+.++.+..+|++|++++
T Consensus 168 a~~s~~~~al~~I~~~~ll~ 187 (316)
T KOG1441|consen 168 AMISNLAFALRNILSKKLLT 187 (316)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999995
No 43
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.94 E-value=0.0002 Score=63.24 Aligned_cols=141 Identities=12% Similarity=0.037 Sum_probs=104.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHHH
Q 027608 8 MRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL--TFSILCSFFLLSVF 85 (221)
Q Consensus 8 ~~~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~ 85 (221)
....++.+.++.+++++|.+.+.-|....+ .|+.++...=-+.+.++..+.....+++...+. +.+....++.-++.
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~ 242 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC 242 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH
Confidence 445788999999999999999999998764 788887766666777777776666666543333 33333322222222
Q ss_pred HHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhc
Q 027608 86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY 155 (221)
Q Consensus 86 g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~ 155 (221)
.+..+.+....+++++|+...+=.-+...+..+..+++++|++++. .++|.++.++|.++....
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~~ 306 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNLA 306 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEcc
Confidence 2566667788899999987766666778899999999999999874 689999999999887543
No 44
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.90 E-value=0.00043 Score=59.29 Aligned_cols=169 Identities=14% Similarity=0.078 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHh---CCCC----hHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC--------C--HHHHHH-HHHHHHHH
Q 027608 25 VSNMEVIKAAMS---KGIN----KYVIIVYSDALSSLFFLFCSFLFHRSERPQL--------T--FSILCS-FFLLSVFG 86 (221)
Q Consensus 25 g~~~v~~K~~~~---~~~~----p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~--------~--~~~~~~-~~~lg~~g 86 (221)
..|.+.+|.+-+ +|-| |+..+..-|+.=++++..+.+++.|...+.. + ...+.. +++.=.+.
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~ 95 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALC 95 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHH
Confidence 457778887643 2333 6666666666667888877666544321100 0 001111 22223344
Q ss_pred -HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCC
Q 027608 87 -CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS 165 (221)
Q Consensus 87 -~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~ 165 (221)
.....+.|.|+.+|+|+.--.+-...-+|+.+++.-+++.+++.+ ||.|+.....|++.+...+-.. .
T Consensus 96 Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d~~~-----~ 164 (372)
T KOG3912|consen 96 DIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLDVHL-----V 164 (372)
T ss_pred HHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeeeccc-----c
Confidence 666778899999999999988888899999999999999998765 6899999999998764321100 0
Q ss_pred CCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 027608 166 HSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLF 210 (221)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~ 210 (221)
+ +....-++.+.||++++.+-+--|.-.++-.|.+++++
T Consensus 165 ~------~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~n 203 (372)
T KOG3912|consen 165 T------DPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSN 203 (372)
T ss_pred c------CCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 0 00111234578999999999999999999988888764
No 45
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.84 E-value=0.00068 Score=57.21 Aligned_cols=101 Identities=8% Similarity=0.035 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH---hhhCCC-C-CCCHHHHHHHHHHHHHHHHHH
Q 027608 16 GMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFL---FHRSER-P-QLTFSILCSFFLLSVFGCSSQ 90 (221)
Q Consensus 16 ~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~---~~~~~~-~-~~~~~~~~~~~~lg~~g~~~~ 90 (221)
..+.++++|+.+.+..|...+ -++...... ...+.|+... ...... . ....++|..++.+|+++.+.+
T Consensus 150 ~~l~aa~~~a~~~i~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~ 222 (256)
T TIGR00688 150 EALVLAFSFTAYGLIRKALKN--TDLAGFCLE-----TLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPL 222 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcCC--CCcchHHHH-----HHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHH
Confidence 456789999999999998533 233322221 1222222211 111111 1 122357888888887778899
Q ss_pred HHHHHHhhccchhHHHHhhhhhHHHHHHHHHHH
Q 027608 91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIF 123 (221)
Q Consensus 91 ~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~ 123 (221)
.+++.|+++.+|+.++.+.++.|+++.+++.+.
T Consensus 223 ~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 223 LAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998754
No 46
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.83 E-value=0.00054 Score=58.68 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHH
Q 027608 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSS 89 (221)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~ 89 (221)
..++...++++.+.+..+.++.|.. ++||.+..+-+ .++.++-..+.....++ +..+++.+ +-.+-|++-...
T Consensus 136 ~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPq-aiGm~i~a~i~~~~~~~--~~~~k~~~-~nil~G~~w~ig 208 (269)
T PF06800_consen 136 MKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQ-AIGMLIGAFIFNLFSKK--PFFEKKSW-KNILTGLIWGIG 208 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHH-HHHHHHHHHHHhhcccc--cccccchH-HhhHHHHHHHHH
Confidence 3568889999999999999988863 47888776644 33333222221111111 11222333 335666666778
Q ss_pred HHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHH
Q 027608 90 QIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (221)
Q Consensus 90 ~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l 151 (221)
+.+++.+.+....+.+=.+..+.+++..+.+.+++||+-++|++ ...++|+++.++|.++
T Consensus 209 nl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~--~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 209 NLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEM--IYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhH--HHHHHHHHHHHHhhhc
Confidence 88899999999999999999999999999999999999887754 3456688877777653
No 47
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=97.82 E-value=5.8e-07 Score=75.55 Aligned_cols=149 Identities=15% Similarity=0.074 Sum_probs=110.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHH
Q 027608 40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVL 119 (221)
Q Consensus 40 ~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~il 119 (221)
.|..-.|+-..+=+++--|...++. + .+ .-.|.+++++|+.-+-.+++...+.|||+-+...++-.-.-..+.++
T Consensus 47 ~Pt~QtFl~Y~LLalVY~~~~~fR~-~---~~-~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~l 121 (336)
T KOG2766|consen 47 APTSQTFLNYVLLALVYGPIMLFRR-K---YI-KAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVL 121 (336)
T ss_pred CccHHHHHHHHHHHHHHhhHHHhhh-H---HH-HHHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHH
Confidence 3566677777777777777765532 1 11 23455688888877667777889999999999998876554567788
Q ss_pred HHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHH
Q 027608 120 AIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWF 199 (221)
Q Consensus 120 a~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~ 199 (221)
+|+++|.|-.+ .|+.|+++++.|+..+++++-.. + ..+++.|...||++++.+|.+||+.+
T Consensus 122 sw~fLktrYrl------mki~gV~iCi~GvvmvV~sDV~a----g---------d~aggsnp~~GD~lvi~GATlYaVSN 182 (336)
T KOG2766|consen 122 SWFFLKTRYRL------MKISGVVICIVGVVMVVFSDVHA----G---------DRAGGSNPVKGDFLVIAGATLYAVSN 182 (336)
T ss_pred HHHHHHHHHhh------heeeeEEeEecceEEEEEeeecc----c---------cccCCCCCccCcEEEEecceeeeecc
Confidence 99999988755 47899999999998887543211 0 12345566789999999999999999
Q ss_pred HHHhhhhcccccc
Q 027608 200 ILQVWPFNFLFYK 212 (221)
Q Consensus 200 i~~k~~~~~~~~~ 212 (221)
+....+.||.|..
T Consensus 183 v~EEflvkn~d~~ 195 (336)
T KOG2766|consen 183 VSEEFLVKNADRV 195 (336)
T ss_pred ccHHHHHhcCcHH
Confidence 9988888887643
No 48
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.75 E-value=0.0016 Score=56.64 Aligned_cols=136 Identities=20% Similarity=0.256 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHH--hhh-CCCCC---CCHHHHHHHHHHHHH
Q 027608 13 PSVGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFL--FHR-SERPQ---LTFSILCSFFLLSVF 85 (221)
Q Consensus 13 ~~l~l~~~~~~wg~~~v~~K~~~~-~~~~p~~l~~~R~~~a~l~l~~~~~~--~~~-~~~~~---~~~~~~~~~~~lg~~ 85 (221)
++..++++.++-|...+..+..++ .+.+|.+..++-...+.++.++.... .+. ....+ ..++.+..++...+.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 788899999999999999988774 46899999999999998888776655 111 10000 112344556666776
Q ss_pred HHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhh
Q 027608 86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (221)
Q Consensus 86 g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~ 154 (221)
+...+.+.+.-.+..+|...+++.++--+++.+++.++++|++++. +++|+++.+.|..+=..
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHHH
Confidence 6666777777889999999999999999999999999999999875 68999999999977543
No 49
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.71 E-value=0.0016 Score=55.83 Aligned_cols=118 Identities=14% Similarity=0.016 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhh-hhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHH
Q 027608 73 FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (221)
Q Consensus 73 ~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~-~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l 151 (221)
.+.+..-++-|++-.+.|..++.+.++...+.+--+. .++=+.+.+.+.++++|.-+.+++ ..-.+++++.++|+.+
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~l 119 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVIL 119 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHH
Confidence 3667666777777799999999999999999987776 466677889999999998876653 1345577888999988
Q ss_pred hhhccCCCCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 027608 152 VTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWP 205 (221)
Q Consensus 152 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~ 205 (221)
.+..++++. ..++..+...|...++++.+.|..|.+..|-.
T Consensus 120 ts~~~~~~~-------------~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~ 160 (269)
T PF06800_consen 120 TSYQDKKSD-------------KSSSKSNMKKGILALLISTIGYWIYSVIPKAF 160 (269)
T ss_pred hcccccccc-------------ccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 765433210 01123455679999999999999999997653
No 50
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=97.68 E-value=0.00099 Score=57.64 Aligned_cols=120 Identities=18% Similarity=0.244 Sum_probs=84.1
Q ss_pred CCCHHHHHH-HHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHh
Q 027608 70 QLTFSILCS-FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGG 148 (221)
Q Consensus 70 ~~~~~~~~~-~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~G 148 (221)
..++++..+ +.-.|+.+.....+-+++++|++-+.=+..=+..|+|+.+++.++.-||.+|. -..-+.+..+|
T Consensus 77 ~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~G 150 (349)
T KOG1443|consen 77 VLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWA------LVLIVLLIAVG 150 (349)
T ss_pred CCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhhh
Confidence 456776654 44566655888999999999999998888888999999999999999998763 12233444556
Q ss_pred HHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccc-cccccc
Q 027608 149 AFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLF-YKAQGV 216 (221)
Q Consensus 149 v~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~-~~~~~~ 216 (221)
+++.+. +... .+ ..|.+++++|.++-++==.+.+.+++|-| .+..++
T Consensus 151 lflft~-KsTq-------------------f~-i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~ 198 (349)
T KOG1443|consen 151 LFLFTY-KSTQ-------------------FN-IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPI 198 (349)
T ss_pred eeEEEe-cccc-------------------ee-ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCe
Confidence 666542 2211 12 46888888877776665556777777776 444443
No 51
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.017 Score=50.33 Aligned_cols=155 Identities=15% Similarity=0.103 Sum_probs=108.5
Q ss_pred HHHHHHHHHhCCCChHHHH--HHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhH
Q 027608 27 NMEVIKAAMSKGINKYVII--VYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTL 104 (221)
Q Consensus 27 ~~v~~K~~~~~~~~p~~l~--~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~ 104 (221)
..+.-|.++...=-|..+. .++.....+.+...-.. +--+.+++++++.++.+-..++-.+....-..+++|.+...
T Consensus 27 m~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm 105 (314)
T KOG1444|consen 27 MTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-GLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPM 105 (314)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-ceeecCCcChHHHHHHccHHHHHHHHHHHccccccccCchH
Confidence 3455677776422233333 47887777666544221 11122567788888888888877777777778999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHHH
Q 027608 105 STAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILG 184 (221)
Q Consensus 105 as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G 184 (221)
-.++=+..|+++++....+++.|.++ ..+..+...++|.......+ ...+ ..|
T Consensus 106 ~tv~kn~tii~~ai~E~lf~~~~~~~------~v~~Sv~~m~~~s~~~~~~d--------------------~sf~-~~g 158 (314)
T KOG1444|consen 106 FTVFKNLTIILTAIGEVLFFGKRPSN------KVWASVFAMIIGSVAAAFTD--------------------LSFN-LRG 158 (314)
T ss_pred HHHHhhchHHHHHHhHHhhcCcCchh------hHHHHHHHHHHHHHhhcccc--------------------ceec-chh
Confidence 99999999999999999999866654 35667777777775543211 1111 248
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccc
Q 027608 185 GFFLAAEAFMNSAWFILQVWPFNFL 209 (221)
Q Consensus 185 ~ll~l~aa~~~a~y~i~~k~~~~~~ 209 (221)
-.+.+.++++-+.|.+..|+..+.-
T Consensus 159 Y~w~~~n~~~~a~~~v~~kk~vd~~ 183 (314)
T KOG1444|consen 159 YSWALANCLTTAAFVVYVKKSVDSA 183 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999887643
No 52
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.41 E-value=0.01 Score=52.73 Aligned_cols=173 Identities=12% Similarity=0.070 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHHHHH--HhhhC---CCCCCCHHHHHHHHHH
Q 027608 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGIN--KYVIIVYSDALSSLFFLFCSF--LFHRS---ERPQLTFSILCSFFLL 82 (221)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~--p~~l~~~R~~~a~l~l~~~~~--~~~~~---~~~~~~~~~~~~~~~l 82 (221)
...+++..+++.++||++++-.|.. +. .| .+..+ -..++ -++.|+.. ...+. .....+.+.+..-++-
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~~-k~-w~wE~~W~v--~gi~~-wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~ 79 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKKV-KK-WSWETMWSV--GGIFS-WLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF 79 (345)
T ss_pred hHHHHHHHHHHHHHhhccccccccc-CC-CchhHHHHH--HHHHH-HHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence 3468889999999999999999983 32 33 22221 01111 12222111 11111 0112345566666666
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHh-hhhhHHHHHHHHHHHhhhcc---ccccccchhHHHHHHHHHHhHHHhhhccCC
Q 027608 83 SVFGCSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKL---NWENKSSQAKSLGTFASIGGAFVVTFYKGP 158 (221)
Q Consensus 83 g~~g~~~~~~~~~gl~~t~a~~as~i-~~~~P~~~~ila~l~~~E~~---~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~ 158 (221)
|.+-...|..++.++++...+.+--+ ..++=++..+...++++|-- +..+ ...-.+|+++.++|+++.......
T Consensus 80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~Ag~~ 157 (345)
T PRK13499 80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRAGQL 157 (345)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 77668889999999999999988655 46888888889888988754 3332 234678999999999988752111
Q ss_pred CCcCCCCCCCCCCcccC--CCCchhHHHHHHHHHHHHHHHHHH
Q 027608 159 PLIGELSHSGSPRRLLL--SPQLSWILGGFFLAAEAFMNSAWF 199 (221)
Q Consensus 159 ~~~~~~~~~~~~~~~~~--~~~~~~~~G~ll~l~aa~~~a~y~ 199 (221)
. + + +..+ .+..+...|..+.+.+.+.+++|+
T Consensus 158 k-~----~-----~~~~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 158 K-E----R-----KMGIKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred c-c----c-----ccccccccccchHhHHHHHHHHHHHHHHHH
Confidence 0 0 0 0000 123456789999999999999999
No 53
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.38 E-value=0.0066 Score=45.11 Aligned_cols=63 Identities=11% Similarity=0.033 Sum_probs=54.3
Q ss_pred HHH-HHHHHHHHHHhhccchhHH-HHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHh
Q 027608 84 VFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (221)
Q Consensus 84 ~~g-~~~~~~~~~gl~~t~a~~a-s~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li 152 (221)
+.+ ...+++...++++.|.+.| ++....--+.+.+.++++++|++++. |++|+.+.+.|++.+
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l 106 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence 444 7778889999999999998 66677888889999999999999875 699999999999875
No 54
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.27 E-value=0.0019 Score=48.82 Aligned_cols=68 Identities=15% Similarity=0.149 Sum_probs=57.3
Q ss_pred HHHHHH-HHHHHHHHHHhhccchhHH-HHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhh
Q 027608 81 LLSVFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (221)
Q Consensus 81 ~lg~~g-~~~~~~~~~gl~~t~a~~a-s~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~ 154 (221)
.+.+.+ ...++++..++++.+.+.| ++...+--+.+.+.+.++++|++++. |++|+.+.++|++.+-.
T Consensus 34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhc
Confidence 345555 8888999999999999988 44457788889999999999999875 69999999999988753
No 55
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.27 E-value=0.0024 Score=47.05 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=57.4
Q ss_pred HHHHHH-HHHHHHHHHHhhccchhHH-HHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608 81 LLSVFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (221)
Q Consensus 81 ~lg~~g-~~~~~~~~~gl~~t~a~~a-s~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 153 (221)
++.+.+ ...+.+.-.++|+.+.+.| ++....--+.+.+.++++++|+++.. |++|+.+.++|++.+-
T Consensus 34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence 344455 7888899999999999998 67778888999999999999999864 7999999999998874
No 56
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.26 E-value=0.0011 Score=58.04 Aligned_cols=138 Identities=15% Similarity=0.154 Sum_probs=107.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHHH-HHHHHhhhCCC---C--CCCHHHHHHH
Q 027608 9 RAALPSVGMVIVLLAQVSNMEVIKAAMS---KGINKYVIIVYSDALSSLFFL-FCSFLFHRSER---P--QLTFSILCSF 79 (221)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~v~~K~~~~---~~~~p~~l~~~R~~~a~l~l~-~~~~~~~~~~~---~--~~~~~~~~~~ 79 (221)
-++.+......+.+..+.--++.|..+. ..++++.+..+.--++...++ |+....+.... . ..+.. ...+
T Consensus 160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~ 238 (316)
T KOG1441|consen 160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLIL 238 (316)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHH
Confidence 4677888999999999999999999883 358999999999999999998 98766544322 1 12223 3344
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608 80 FLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (221)
Q Consensus 80 ~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 153 (221)
.+.+.+....|...|+-+..|||-+=++...+==.++...++++++|++|+. +..|..+++.|+.+=.
T Consensus 239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence 4555555888889999999999999888877655566677888999988875 6899999999998754
No 57
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.24 E-value=0.016 Score=44.85 Aligned_cols=107 Identities=15% Similarity=0.136 Sum_probs=73.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhh-hHHHHHH
Q 027608 40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNL-IPAFTFV 118 (221)
Q Consensus 40 ~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~-~P~~~~i 118 (221)
+|+.-++.-+..+.+++..+.+..+++..+..+.-+ ++...-|++|..+-.+........+++++..+.-+ +=+...+
T Consensus 29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p-~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~ 107 (138)
T PF04657_consen 29 SPLVASFISFGVGFILLLIILLITGRPSLASLSSVP-WWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLL 107 (138)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCC-hHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 599999999999999888777665443222222112 24445778888888888999999999988777654 5555566
Q ss_pred HHHH--HhhhccccccccchhHHHHHHHHHHhHHH
Q 027608 119 LAII--FRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (221)
Q Consensus 119 la~l--~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l 151 (221)
+.++ +..||.+ .+..|++|+++.++|+.+
T Consensus 108 iD~fG~fg~~~~~----~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 108 IDHFGLFGAPKRP----FSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHccccCCCCCC----CCHHHHHHHHHHHHHHhC
Confidence 6663 3333322 235689999999999863
No 58
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.17 E-value=0.0035 Score=46.67 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=56.2
Q ss_pred HHHHH-HHHHHHHHHHhhccchhHH-HHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhh
Q 027608 82 LSVFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (221)
Q Consensus 82 lg~~g-~~~~~~~~~gl~~t~a~~a-s~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~ 154 (221)
..+.+ ...+.++..++++.|.+.| ++...+--+.+.+.++++++|++++. |++|+.+.++|++.+..
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 44556 7788888999999999988 45466777888999999999999975 69999999999998853
No 59
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.98 E-value=0.0055 Score=45.22 Aligned_cols=64 Identities=9% Similarity=-0.029 Sum_probs=55.3
Q ss_pred HHH-HHHHHHHHHHhhccchhHH-HHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608 84 VFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (221)
Q Consensus 84 ~~g-~~~~~~~~~gl~~t~a~~a-s~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 153 (221)
+.+ ...+++...+++..|.+.| ++...+--+.+.+.++++++|++++. |++|+.+.++|++.+-
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence 455 7888889999999999988 66667888899999999999999875 6999999999998763
No 60
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.98 E-value=0.057 Score=46.55 Aligned_cols=127 Identities=10% Similarity=0.020 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 027608 18 VIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER--PQLTFSILCSFFLLSVFGCSSQIFSFV 95 (221)
Q Consensus 18 ~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~--~~~~~~~~~~~~~lg~~g~~~~~~~~~ 95 (221)
+..++.||.++..=|.. ++|+.+=.+.-...-...-+.+.++.+.... ..-+.+++..+...|....+.-.+|..
T Consensus 154 l~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~ 230 (293)
T COG2962 154 LALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAA 230 (293)
T ss_pred HHHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHH
Confidence 34577888888776653 3676655544444433333333333222110 112456777788888888999999999
Q ss_pred HhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608 96 GIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (221)
Q Consensus 96 gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 153 (221)
|-++++-+.-+++++..|.+..+++.++++|+++.- |.+.-+..-.|.++..
T Consensus 231 aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~ 282 (293)
T COG2962 231 AAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFS 282 (293)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999864 6777777777877654
No 61
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.87 E-value=0.0032 Score=47.02 Aligned_cols=108 Identities=16% Similarity=0.141 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHH
Q 027608 18 VIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIFSFVG 96 (221)
Q Consensus 18 ~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~~~~~~~~g 96 (221)
+++.++||.+.++.|.+.. +.++..-.. |..-....+ .+.+.+ .+.+.- -.....|+..
T Consensus 2 l~Vg~~WG~Tnpfik~g~~-~~~~~~~~~-~~~~~~~~L----------------l~n~~y--~ipf~lNq~GSv~f~~~ 61 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSS-GLEKVKASL-QLLQEIKFL----------------LLNPKY--IIPFLLNQSGSVLFFLL 61 (113)
T ss_pred eeehHHhcCchHHHHHHHh-hcCCccchH-HHHHHHHHH----------------HHhHHH--HHHHHHHHHHHHHHHHH
Confidence 4568999999999999875 355443331 322111110 111112 234444 5667788899
Q ss_pred hhccchhHHHHhh-hhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHH
Q 027608 97 IQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (221)
Q Consensus 97 l~~t~a~~as~i~-~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l 151 (221)
+..++-|.+.-+. ++.=++|.+.++++++|..+++ .++|+.+.+.|+.+
T Consensus 62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVAL 111 (113)
T ss_pred HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeee
Confidence 9999999998885 6788899999988877776543 58999999999865
No 62
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.85 E-value=0.091 Score=46.73 Aligned_cols=143 Identities=13% Similarity=0.015 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHHHHHHH-------HHHHHHHhCCCChHHHHHHHHH---HHHHHHH-HHHHHhh-h-CCC-----CCCC
Q 027608 11 ALPSVGMVIVLLAQVSNM-------EVIKAAMSKGINKYVIIVYSDA---LSSLFFL-FCSFLFH-R-SER-----PQLT 72 (221)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~-------v~~K~~~~~~~~p~~l~~~R~~---~a~l~l~-~~~~~~~-~-~~~-----~~~~ 72 (221)
.|+...++++.+..+..+ +.-+.+.+.+.+|.....-.+. ++..+.- .++.+.. | ++. .+.+
T Consensus 173 ~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~ 252 (345)
T PRK13499 173 KKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLA 252 (345)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcccc
Confidence 577888888888888888 6666555557788776666665 4444332 2333221 2 111 1112
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHhhccchhHHHH---hh-hhhHHHHHHHHHHHhhhccccccccchhHHHHHHH
Q 027608 73 FSILCSF----FLLSVFGCSSQIFSFVGIQYSSPTLSTA---ML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFA 144 (221)
Q Consensus 73 ~~~~~~~----~~lg~~g~~~~~~~~~gl~~t~a~~as~---i~-~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l 144 (221)
++.+.+- .+.|++-...+.+|..|-+..+...+.+ +. .+.-++..+-+. ++||+-+..|+.-+.-++|+++
T Consensus 253 ~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vl 331 (345)
T PRK13499 253 KPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVV 331 (345)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHH
Confidence 2222332 3333333777778888888775555544 55 555566666676 6999987444444567889999
Q ss_pred HHHhHHHhhh
Q 027608 145 SIGGAFVVTF 154 (221)
Q Consensus 145 ~~~Gv~li~~ 154 (221)
.++|+.++..
T Consensus 332 iI~g~~lig~ 341 (345)
T PRK13499 332 IILAANIVGL 341 (345)
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 63
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.79 E-value=0.00074 Score=57.51 Aligned_cols=134 Identities=16% Similarity=0.119 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 027608 12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQI 91 (221)
Q Consensus 12 ~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~ 91 (221)
++..+.+.+++.-+..++..|..-+ ..+.+....+-..++.+.-+..+.....-..| -.+|||..+..+|++|++.|.
T Consensus 191 ~gt~aai~s~lf~asvyIilR~iGk-~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP-~cgkdr~l~~~lGvfgfigQI 268 (346)
T KOG4510|consen 191 PGTVAAISSVLFGASVYIILRYIGK-NAHAIMSVSYFSLITLVVSLIGCASIGAVQLP-HCGKDRWLFVNLGVFGFIGQI 268 (346)
T ss_pred CchHHHHHhHhhhhhHHHHHHHhhc-cccEEEEehHHHHHHHHHHHHHHhhccceecC-ccccceEEEEEehhhhhHHHH
Confidence 3456677777777888888887423 35555444444444444333222222222223 457888888899999999999
Q ss_pred HHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608 92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (221)
Q Consensus 92 ~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 153 (221)
+...|+|.-.|+-.+++.++.-++..+.-.++++|.+|+. .+.|.++.+...+...
T Consensus 269 llTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w------s~~Ga~~vvsS~v~~a 324 (346)
T KOG4510|consen 269 LLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW------SWVGAVMVVSSTVWVA 324 (346)
T ss_pred HHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHH------HhhceeeeehhHHHHH
Confidence 9999999999999999999999999999999999988875 5777777666655544
No 64
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.56 E-value=0.011 Score=42.53 Aligned_cols=56 Identities=20% Similarity=0.125 Sum_probs=33.7
Q ss_pred HHHH-HHHHHHHHHHhhccchhHH-HHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHH
Q 027608 83 SVFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFA 144 (221)
Q Consensus 83 g~~g-~~~~~~~~~gl~~t~a~~a-s~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l 144 (221)
.+.+ ...+.++..++++.+.+.+ ++...+..+.+.+.+.++++|++|++ |++|+.+
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l 92 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence 3445 7888899999999999999 66677899999999999999999986 5777765
No 65
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.40 E-value=0.047 Score=47.66 Aligned_cols=69 Identities=23% Similarity=0.367 Sum_probs=58.8
Q ss_pred HHHHHH-HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhc
Q 027608 81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY 155 (221)
Q Consensus 81 ~lg~~g-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~ 155 (221)
+.|+.. .+.+.+.+.++.+.+++.-+-+..+.-++..+++..+++||++++ .+.|+.+++.|..+++..
T Consensus 54 ~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 54 WIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIF 123 (300)
T ss_pred HHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEe
Confidence 455555 667778889999999999999999999999999999999999865 689999999999877644
No 66
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.38 E-value=0.043 Score=48.95 Aligned_cols=141 Identities=11% Similarity=0.164 Sum_probs=100.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCC---CCHHHHHHHHH
Q 027608 8 MRAALPSVGMVIVLLAQVSNMEVIKAAMSK---GINKYVIIVYSDALSSLFFLFCSFLFHRSERPQ---LTFSILCSFFL 81 (221)
Q Consensus 8 ~~~~~~~l~l~~~~~~wg~~~v~~K~~~~~---~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~---~~~~~~~~~~~ 81 (221)
.+...+.++.+++++.+|.+.++.|.-.++ .+|--.+..+=-++..++++|..+...+-..++ ++..+..-+++
T Consensus 243 ~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~ 322 (416)
T KOG2765|consen 243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVF 322 (416)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeH
Confidence 344568889999999999999999985543 245444555555667778887665543322222 22334445678
Q ss_pred HHHHH-HHHHHHHHHHhhccchhHHHHhhhh-hHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhc
Q 027608 82 LSVFG-CSSQIFSFVGIQYSSPTLSTAMLNL-IPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY 155 (221)
Q Consensus 82 lg~~g-~~~~~~~~~gl~~t~a~~as~i~~~-~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~ 155 (221)
.++++ ++.-+++.+|.-.|++-.+++=.++ +| ..++.-.++.+.+++ ...++|.+..++|-+.+...
T Consensus 323 ~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIP-LA~~aD~l~k~~~~S------~~~iiGsi~Ifv~Fv~vn~~ 391 (416)
T KOG2765|consen 323 NNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIP-LAMFADVLIKGKHPS------ALYIIGSIPIFVGFVIVNIS 391 (416)
T ss_pred hhHHHHHHHHHHHHHHHHhccchhheeeeeEeee-HHHHHHHHHcCCCCC------HHHHHHHHHHHHHHhheecc
Confidence 89999 9999999999999999999887765 55 455556666555555 46799999999998887643
No 67
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.14 E-value=0.02 Score=48.12 Aligned_cols=109 Identities=12% Similarity=0.077 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCC
Q 027608 87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH 166 (221)
Q Consensus 87 ~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~ 166 (221)
.+.+...+.+++|.+=-+..+=-+.-|+=+++++.++.+++-+|+ |...++...+|+++.....+...
T Consensus 96 LlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFmYK~~Kv~------ 163 (337)
T KOG1580|consen 96 LLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFMYKENKVG------ 163 (337)
T ss_pred HHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhhccccccC------
Confidence 777888899999998777777778889999999999999988875 68999999999988754323221
Q ss_pred CCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q 027608 167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFYKAQG 215 (221)
Q Consensus 167 ~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~~~~~~ 215 (221)
..+.++...|.++++++--.=+.-...|+++.+.|.+....
T Consensus 164 --------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~ 204 (337)
T KOG1580|consen 164 --------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTS 204 (337)
T ss_pred --------CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchh
Confidence 12334556899999998888888888999998888765443
No 68
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.85 E-value=0.33 Score=42.29 Aligned_cols=148 Identities=14% Similarity=0.096 Sum_probs=96.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhh--hhHHHHH
Q 027608 40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN--LIPAFTF 117 (221)
Q Consensus 40 ~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~--~~P~~~~ 117 (221)
+|..+.+.+-+.+.++=. +....++.. ....+.|.++..+++.......|.+.+++|.|=-.-.+-=. +.|++
T Consensus 50 ~~~fL~~~q~l~~~~~s~--~~l~~~k~~-~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm-- 124 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSY--AMLKWWKKE-LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVM-- 124 (327)
T ss_pred ccHHHHHHHHHHHHHHHH--HHHhccccc-CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHH--
Confidence 455666666666655442 223333332 23345677888888877888899999999987443333322 56654
Q ss_pred HHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHH
Q 027608 118 VLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSA 197 (221)
Q Consensus 118 ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~ 197 (221)
+.+.++.+.|.+.+ +.....+.-.|+.+..+.+..+ . ......++...|..++...-+.=++
T Consensus 125 lmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~--s----------~~~~g~~ns~~G~~Ll~~~L~fDgf 186 (327)
T KOG1581|consen 125 LMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD--S----------SSKSGRENSPIGILLLFGYLLFDGF 186 (327)
T ss_pred HHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC--C----------ccccCCCCchHhHHHHHHHHHHHhh
Confidence 56778888787764 5666777778887655443221 0 0112334567899999999998889
Q ss_pred HHHHHhhhhcccc
Q 027608 198 WFILQVWPFNFLF 210 (221)
Q Consensus 198 y~i~~k~~~~~~~ 210 (221)
-+..|+++.++|.
T Consensus 187 Tn~tQd~lf~~~k 199 (327)
T KOG1581|consen 187 TNATQDSLFKKYK 199 (327)
T ss_pred HHhHHHHHhccCC
Confidence 9999999988653
No 69
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.80 E-value=0.00054 Score=57.61 Aligned_cols=171 Identities=16% Similarity=0.081 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 027608 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF 92 (221)
Q Consensus 13 ~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~ 92 (221)
.++..++-++.||+...+.-.- |=+|.+-..-- .++++++....++. . +|..+.+.+.--++-|.+-.+.|..
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGt-T~GALifaiiv~~~-~--~p~~T~~~~iv~~isG~~Ws~GQ~~ 75 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGT-TLGALIFAIIVFLF-V--SPELTLTIFIVGFISGAFWSFGQAN 75 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec---CCChhHhhhhc-cHHHHHHHHHHhee-e--cCccchhhHHHHHHhhhHhhhhhhh
Confidence 4566777899999988775431 33565544332 23344333333332 2 3455666665555556655888999
Q ss_pred HHHHhhccchhHHHHhhh-hhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCC
Q 027608 93 SFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR 171 (221)
Q Consensus 93 ~~~gl~~t~a~~as~i~~-~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~ 171 (221)
++.++++.+.++|.-+.+ ++=+-+.+.+.+.++|.-+..+. ....+.+++.+.|+.+-+..+..+-
T Consensus 76 Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~--IlG~iAliliviG~~lTs~~~~~nk----------- 142 (288)
T COG4975 76 QFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQI--ILGFIALILIVIGIYLTSKQDRNNK----------- 142 (288)
T ss_pred hhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhH--HHHHHHHHHHHHhheEeeeeccccc-----------
Confidence 999999999999987764 67777888899999998765442 1223345566677766543221110
Q ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 027608 172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWP 205 (221)
Q Consensus 172 ~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~ 205 (221)
..++.++.-.|...++.+.+.|-.|.++.+-.
T Consensus 143 --~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f 174 (288)
T COG4975 143 --EEENPSNLKKGIVILLISTLGYVGYVVLFQLF 174 (288)
T ss_pred --cccChHhhhhheeeeeeeccceeeeEeeeccc
Confidence 01123345578888888888888887775443
No 70
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.19 E-value=0.18 Score=41.53 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHH
Q 027608 84 VFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF 150 (221)
Q Consensus 84 ~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~ 150 (221)
+.....+.+..+-++|.++..-+....+.++++.+++.++++|+++.. ++.|+.+.+.|+.
T Consensus 160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~ 220 (222)
T TIGR00803 160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF 220 (222)
T ss_pred HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence 333666677889999999999999999999999999999999999875 6889999988864
No 71
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.18 E-value=0.11 Score=43.89 Aligned_cols=73 Identities=18% Similarity=0.262 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHh
Q 027608 74 SILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (221)
Q Consensus 74 ~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li 152 (221)
..|..+.++++.+++.|.+.|.-+.+-+|-.-|+++.+--.||.+.+.+++..+++.| ||+|.++.+.+..+=
T Consensus 239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTAD 311 (337)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhH
Confidence 3466778888888999999999999999999999999999999999999999999876 589999999998653
No 72
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.11 E-value=2.2 Score=33.40 Aligned_cols=110 Identities=8% Similarity=0.016 Sum_probs=64.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhh-hhhHHHHHH
Q 027608 40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAML-NLIPAFTFV 118 (221)
Q Consensus 40 ~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~-~~~P~~~~i 118 (221)
+|+.-.+..+..+.+++..+.+..+++......++.-++...-|.+|..+-..-........+++...+. .-+-+...+
T Consensus 33 spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~gll 112 (150)
T COG3238 33 SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLL 112 (150)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHH
Confidence 6999999999999998888877633322111112223344555666655555555566666666554333 334444444
Q ss_pred HHHHH-hhhccccccccchhHHHHHHHHHHhHHHh
Q 027608 119 LAIIF-RLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (221)
Q Consensus 119 la~l~-~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li 152 (221)
+.++= ++++ +|.++..|++|+++.++|++++
T Consensus 113 iD~fG~~g~~---~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 113 IDHFGWFGVP---KRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHhhcccCCC---cCCCCHHHHHHHHHHHHHHHHh
Confidence 44321 2222 2335667899999999996554
No 73
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.28 E-value=1.2 Score=39.03 Aligned_cols=137 Identities=18% Similarity=0.216 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhh-C----CCC-CCCHHHHHHHHHHH
Q 027608 11 ALPSVGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFLFHR-S----ERP-QLTFSILCSFFLLS 83 (221)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~v~~K~~~~-~~~~p~~l~~~R~~~a~l~l~~~~~~~~~-~----~~~-~~~~~~~~~~~~lg 83 (221)
..+|..+....+.=....+..|...+ .+.+-+.+.++.-+++.+.+..+.+..+. + ..+ ..+...+..+.+-+
T Consensus 156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc 235 (314)
T KOG1444|consen 156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC 235 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence 34677788777777888888888765 35778889999999988877766544321 1 001 11223345555666
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608 84 VFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (221)
Q Consensus 84 ~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 153 (221)
++|++-.++-++-.+.+||..-++.-...-..+.+...++++++.++ ..++|+.+++.|-++=.
T Consensus 236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~------~n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTF------LNVIGLLVGFFGGVLYS 299 (314)
T ss_pred HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceech------hhhHHHHHHhhhhhHHh
Confidence 66677777888999999999888888555555666666777788775 46899999998876643
No 74
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.43 E-value=0.071 Score=46.62 Aligned_cols=118 Identities=18% Similarity=0.169 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHH-HH
Q 027608 10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS 88 (221)
Q Consensus 10 ~~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g-~~ 88 (221)
+..+....+.+.++-|+++++-|.+... ..... .+ .+.-+..-.++ +....|.+- .+
T Consensus 19 ~~~G~~LaissS~~Ig~sfilkKkgl~r-----------~~~~~--------~r-a~~gg~~yl~~--~~Ww~G~ltm~v 76 (335)
T KOG2922|consen 19 NIIGLVLAISSSIFIGSSFILKKKGLKR-----------AGASG--------LR-AGEGGYGYLKE--PLWWAGMLTMIV 76 (335)
T ss_pred ceeeeeehhhccEEEeeehhhhHHHHHH-----------Hhhhc--------cc-ccCCCcchhhh--HHHHHHHHHHHH
Confidence 3455666777788889999988887643 11110 01 01111111233 233456665 66
Q ss_pred HHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhc
Q 027608 89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY 155 (221)
Q Consensus 89 ~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~ 155 (221)
....-|.+..+.+++.-+-+-++.-++..+++..+++||++++ ..+|..++++|-.+++..
T Consensus 77 Gei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 77 GEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEEe
Confidence 6666777888999999999999999999999999999999875 578999999998887643
No 75
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=91.23 E-value=0.2 Score=42.53 Aligned_cols=132 Identities=14% Similarity=0.100 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 027608 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF 92 (221)
Q Consensus 13 ~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~ 92 (221)
+...++.+.+.+-.+.+..+.-.-++++.+.--+.-+.++++++-- ++..++.++..| .-.+-|++-...+.+
T Consensus 153 gi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~------~~~~~~~~K~t~-~nii~G~~Wa~GNl~ 225 (288)
T COG4975 153 GIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGF------FKMEKRFNKYTW-LNIIPGLIWAIGNLF 225 (288)
T ss_pred heeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhh------cccccchHHHHH-HHHhhHHHHHhhHHH
Confidence 4444445555555555544432223455544444455555544321 121122333333 335567666777888
Q ss_pred HHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608 93 SFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (221)
Q Consensus 93 ~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 153 (221)
++.+-+....+++=.+..+.-+...+-+.++++||-|.|++ ...++|+++.++|+.++.
T Consensus 226 ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm--~~v~iGiilivvgai~lg 284 (288)
T COG4975 226 MLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM--VYVIIGIILIVVGAILLG 284 (288)
T ss_pred HHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh--hhhhhhHHHHHHHhhhhh
Confidence 88888877666665666677777788899999999998875 356789999999988764
No 76
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=90.98 E-value=7.2 Score=34.00 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHHHHHHHHHHHHH----HHHHhhh-C--CCCCCCHHHHHHHH--
Q 027608 11 ALPSVGMVIVLLAQVSNMEVIKA-AMSKGINKYVIIVYSDALSSLFFLF----CSFLFHR-S--ERPQLTFSILCSFF-- 80 (221)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~v~~K~-~~~~~~~p~~l~~~R~~~a~l~l~~----~~~~~~~-~--~~~~~~~~~~~~~~-- 80 (221)
..+.++.++++++-+.-++.-.+ .....++|...+.+.-..+.+++.. +.++... . ..++-.+.||...+
T Consensus 175 itGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~ 254 (372)
T KOG3912|consen 175 ITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAA 254 (372)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHH
Confidence 46788999999999999988554 4445699999999998887554433 3222111 1 12333355554322
Q ss_pred -------HHHHHH-HHHHHHH-HHHh---hccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHh
Q 027608 81 -------LLSVFG-CSSQIFS-FVGI---QYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGG 148 (221)
Q Consensus 81 -------~lg~~g-~~~~~~~-~~gl---~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~G 148 (221)
.+...+ .....+| +.|+ |+.||++=.++-.+=-.++.+++..+..|+++. .|+.|.++-+.|
T Consensus 255 ~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~l------lqilGFliLi~G 328 (372)
T KOG3912|consen 255 LQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHL------LQILGFLILIMG 328 (372)
T ss_pred hcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 333333 3332222 2333 556788878888887888888899999999986 469999999999
Q ss_pred HHHh
Q 027608 149 AFVV 152 (221)
Q Consensus 149 v~li 152 (221)
.++-
T Consensus 329 i~lY 332 (372)
T KOG3912|consen 329 IILY 332 (372)
T ss_pred HHHH
Confidence 8763
No 77
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.85 E-value=2.5 Score=36.58 Aligned_cols=191 Identities=12% Similarity=0.123 Sum_probs=111.2
Q ss_pred CccccchhhhHHHHHHHHHH-HHHHHHHHHHHHHHh-CCCChH--HHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHH
Q 027608 2 GVDMGSMRAALPSVGMVIVL-LAQVSNMEVIKAAMS-KGINKY--VIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILC 77 (221)
Q Consensus 2 ~~~~~~~~~~~~~l~l~~~~-~~wg~~~v~~K~~~~-~~~~p~--~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~ 77 (221)
|.|.....+|..++..-.+. +.+=.+...-....+ .++.|+ .+++.++++=..+-+.-.... +.+++..+ |+
T Consensus 32 g~~ls~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~-~~k~r~iP---~r 107 (367)
T KOG1582|consen 32 GFNLSDKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLI-QTKRRVIP---WR 107 (367)
T ss_pred eeccccCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEee-cccceecc---hh
Confidence 34445555665544332221 222233333333332 357765 566777766433322211111 11112233 44
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhHHHHhhh--hhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhc
Q 027608 78 SFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN--LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY 155 (221)
Q Consensus 78 ~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~--~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~ 155 (221)
.+..++++-.+.+.+-+-++.|.+=-.--++-. +.|++ +.+.++-+.|-.+ ...+...+-..|.++.++.
T Consensus 108 tY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVm--iggifIqGkRY~v------~d~~aA~lm~lGli~FTLA 179 (367)
T KOG1582|consen 108 TYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVM--IGGIFIQGKRYGV------HDYIAAMLMSLGLIWFTLA 179 (367)
T ss_pred HhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhh--heeeeeccccccH------HHHHHHHHHHHHHHhhhhc
Confidence 566677766666767677777765444444433 46655 4567776666544 4678888888999887765
Q ss_pred cCCCCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccC
Q 027608 156 KGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLFYKAQGVVKSAY 221 (221)
Q Consensus 156 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~~~~~~~~~~~~ 221 (221)
+.+. +++.+ ..|..++-+|-++=|+---+|.+..+.++....-++.+.|
T Consensus 180 Ds~~----------------sPNF~-~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy 228 (367)
T KOG1582|consen 180 DSQT----------------SPNFN-LIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSY 228 (367)
T ss_pred cccc----------------CCCcc-eeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeee
Confidence 4321 11222 5799999999999999999999999999887776666544
No 78
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=89.66 E-value=3.1 Score=35.01 Aligned_cols=132 Identities=14% Similarity=0.171 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCC----CCCHHHHHHHHHHHHHHHH
Q 027608 14 SVGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFLFHRSERP----QLTFSILCSFFLLSVFGCS 88 (221)
Q Consensus 14 ~l~l~~~~~~wg~~~v~~K~~~~-~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~----~~~~~~~~~~~~lg~~g~~ 88 (221)
|+.+..-.+.=+......|...+ ....-++-.++.-.++..+++.+.+..+.+... .++...+.++++-|+..++
T Consensus 157 Y~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svg 236 (309)
T COG5070 157 YLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVG 236 (309)
T ss_pred eEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhh
Confidence 44444433333444444555443 236678899999999999998887765543211 1233334456666666677
Q ss_pred HHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHH
Q 027608 89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (221)
Q Consensus 89 ~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l 151 (221)
-.++--|-++-|+.+.-+.+-++.-.-..+.+.++++|+.+.. ++..+.+++...++
T Consensus 237 iSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~------si~sillGflsg~i 293 (309)
T COG5070 237 ISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFL------SIFSILLGFLSGAI 293 (309)
T ss_pred hhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHH
Confidence 7778888899999999999999988888889999999998864 57888888654433
No 79
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.15 E-value=0.74 Score=39.76 Aligned_cols=143 Identities=17% Similarity=0.073 Sum_probs=75.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhC----CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhH
Q 027608 40 NKYVIIVYSDALSSLFFLFCSFLFHRS----ERPQ--LTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIP 113 (221)
Q Consensus 40 ~p~~l~~~R~~~a~l~l~~~~~~~~~~----~~~~--~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~~P 113 (221)
.|.....++.++...+-+.+.....+- ..++ ++.+....+.-+.+.-.+...+-+.-++|.+.+.=-+=-.+.-
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt 139 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT 139 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence 477788888888766555554332211 1122 3333333332222221111222234455554432222234666
Q ss_pred HHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHH
Q 027608 114 AFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAF 193 (221)
Q Consensus 114 ~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~ 193 (221)
+|+.++++.++|+|-+... ..+..+.+.|- .+ |. ++++ ..+.-...|.++.+.|.+
T Consensus 140 vFtVlLtyvllkqkTs~~~------~~~C~lIi~GF-~l----Gv--dqE~-----------~~~~ls~~GvifGVlaSl 195 (347)
T KOG1442|consen 140 VFTVLLTYVLLKQKTSFFA------LGCCLLIILGF-GL----GV--DQEG-----------STGTLSWIGVIFGVLASL 195 (347)
T ss_pred hHHHHhHHhhccccccccc------ceeehhheehh-ee----cc--cccc-----------ccCccchhhhHHHHHHHH
Confidence 8999999999999876531 22333333332 11 21 1110 112223589999999999
Q ss_pred HHHHHHHHHhhhh
Q 027608 194 MNSAWFILQVWPF 206 (221)
Q Consensus 194 ~~a~y~i~~k~~~ 206 (221)
+-|...|..||.+
T Consensus 196 ~vAlnaiytkk~l 208 (347)
T KOG1442|consen 196 AVALNAIYTKKVL 208 (347)
T ss_pred HHHHHHHhhheec
Confidence 9999999988554
No 80
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=88.74 E-value=7.8 Score=33.96 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-----CCHHHHHHHHHHHHH
Q 027608 12 LPSVGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQ-----LTFSILCSFFLLSVF 85 (221)
Q Consensus 12 ~~~l~l~~~~~~wg~~~v~~K~~~~-~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~-----~~~~~~~~~~~lg~~ 85 (221)
.++.++..-.++=|.....-+.... .+++++.+.+.-.+..++.-... +......++. ..++-++-+++.+.+
T Consensus 172 ~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~-li~qg~~~~av~F~~~hp~~~~Di~l~s~~ 250 (327)
T KOG1581|consen 172 IGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTY-LILQGHLLPAVSFIKEHPDVAFDILLYSTC 250 (327)
T ss_pred HhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHh-hhcCCCCchHHHHHHcChhHHHHHHHHHHh
Confidence 4555555444444444444333333 35788888877777666544333 2222221121 234556678889999
Q ss_pred HHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHh
Q 027608 86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (221)
Q Consensus 86 g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li 152 (221)
|+..|.+-+.-++.-.+-.-+.|+.+==++..+++.+.++.++++.| +.|+.+.|.|..+=
T Consensus 251 gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q------~~g~~iVFg~i~l~ 311 (327)
T KOG1581|consen 251 GAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQ------WLGVLIVFGGIFLE 311 (327)
T ss_pred hhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhh------ccCeeeehHHHHHH
Confidence 98888888888888888777788888888999999999999998764 68888988888663
No 81
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=85.74 E-value=3.1 Score=36.03 Aligned_cols=131 Identities=11% Similarity=0.095 Sum_probs=83.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchh-HHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHH
Q 027608 69 PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPT-LSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIG 147 (221)
Q Consensus 69 ~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~-~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~ 147 (221)
++.+.|++...+.+= +..+.+-+.++++-=+- .=-++-.-.++.++++++++.+.|-+.+ |+..+++.-+
T Consensus 60 ~kiplk~Y~i~V~mF---F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iTi 130 (330)
T KOG1583|consen 60 PKIPLKDYAITVAMF---FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMITI 130 (330)
T ss_pred CCCchhhhheehhee---eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhhh
Confidence 566777654333222 44455566777773222 2223335678889999999998887765 6889999999
Q ss_pred hHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 027608 148 GAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLF 210 (221)
Q Consensus 148 Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~ 210 (221)
|+++-++.+.++.+. . +.....++.......|..|..++..|-+.=|.-.++|.++=|||.
T Consensus 131 GiiIcTl~s~~d~~~-~-~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG 191 (330)
T KOG1583|consen 131 GIIICTLFSSKDGRS-K-LSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYG 191 (330)
T ss_pred hheeEEeecCcchhh-h-hcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 998876654443321 0 000000001112234678999999999999999999999888874
No 82
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=81.27 E-value=32 Score=29.00 Aligned_cols=120 Identities=10% Similarity=0.030 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH-HhhhCC-CCCCCHHHHHHHHHHHHHH-H
Q 027608 11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSF-LFHRSE-RPQLTFSILCSFFLLSVFG-C 87 (221)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~-~~~~~~-~~~~~~~~~~~~~~lg~~g-~ 87 (221)
..+.++.++++++=|...+.....++++-.|+..--.+..+-++++..+.. ..++.. ..+--.+.+-...+.-++. .
T Consensus 113 ~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a 192 (244)
T PF04142_consen 113 LLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQA 192 (244)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHHH
Confidence 456778888889999999999888876445555554554444443333322 222211 1111112222222223333 4
Q ss_pred HHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhcccc
Q 027608 88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNW 130 (221)
Q Consensus 88 ~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~ 130 (221)
......-.-+||.+...=..-.+..-+++.+++.++++++++.
T Consensus 193 ~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~ 235 (244)
T PF04142_consen 193 IGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSL 235 (244)
T ss_pred HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 4555556688999988888888888899999999999999875
No 83
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=80.00 E-value=2.3 Score=35.78 Aligned_cols=143 Identities=13% Similarity=0.122 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHH
Q 027608 41 KYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLA 120 (221)
Q Consensus 41 p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila 120 (221)
-+.+.+.+-....+-+..+-+. |- .+.+.++.+..+..+++-+.-.+.--.+++|.+...=+++-++.-+.++..-
T Consensus 37 nflll~vQSlvcvv~l~iLk~l--~~--~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygE 112 (309)
T COG5070 37 NFLLLAVQSLVCVVGLLILKFL--RL--VEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGE 112 (309)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH--hH--hheehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhH
Confidence 3556677766655544443221 11 1122333444445555544444445578999999999999999988888888
Q ss_pred HHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHH
Q 027608 121 IIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFI 200 (221)
Q Consensus 121 ~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i 200 (221)
.++++.|++-- +....++-+..-++-...+.+. ........+.|-+++...+++-+.|..
T Consensus 113 vl~Fgg~vtsl------~l~SFilMvlSS~va~w~D~q~--------------~~~~~~~lN~GY~Wm~~NclssaafVL 172 (309)
T COG5070 113 VLFFGGRVTSL------ELLSFILMVLSSVVATWGDQQA--------------SAFKAQILNPGYLWMFTNCLSSAAFVL 172 (309)
T ss_pred HHHhcCccchh------hHHHHHHHHHHHHHhccchhhH--------------HHHHhcccCCceEEEehhhHhHHHHHH
Confidence 88988888643 3444444444444333221110 000111234689999999999999999
Q ss_pred HHhhhhc
Q 027608 201 LQVWPFN 207 (221)
Q Consensus 201 ~~k~~~~ 207 (221)
..|+..+
T Consensus 173 ~mrkri~ 179 (309)
T COG5070 173 IMRKRIK 179 (309)
T ss_pred HHHHhhc
Confidence 8887654
No 84
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=76.79 E-value=53 Score=29.03 Aligned_cols=135 Identities=15% Similarity=0.071 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHHHHHHHHHHhhhCCC----CC---CC----HHHH
Q 027608 12 LPSVGMVIVLLAQVSNMEVIKAAMSKG----INKYVIIVYSDALSSLFFLFCSFLFHRSER----PQ---LT----FSIL 76 (221)
Q Consensus 12 ~~~l~l~~~~~~wg~~~v~~K~~~~~~----~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~----~~---~~----~~~~ 76 (221)
.+......+.++=|.-..+.+..+++. =+|++..+.=.-.-.+.++|..+..|+... +. .+ .+..
T Consensus 164 ~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~ 243 (349)
T KOG1443|consen 164 EGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVI 243 (349)
T ss_pred hhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHH
Confidence 455555555566555555555555421 257766655444455566666555554211 00 11 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHh
Q 027608 77 CSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (221)
Q Consensus 77 ~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li 152 (221)
..+.+.|+..++--...+.=+..|+.-..++.--.-=+.+.++++.+.+|+++. ..+.|..++..|+..=
T Consensus 244 g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~------lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 244 GLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSL------LNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhh------hHHHHHHHHHHHHHHh
Confidence 223333333333334555556666666656555556678889999999999984 4689999999999764
No 85
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=76.25 E-value=19 Score=31.28 Aligned_cols=112 Identities=14% Similarity=0.189 Sum_probs=79.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhh--CCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhH
Q 027608 39 INKYVIIVYSDALSSLFFLFCSFLFHR--SER---PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIP 113 (221)
Q Consensus 39 ~~p~~l~~~R~~~a~l~l~~~~~~~~~--~~~---~~~~~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~~P 113 (221)
-+..++.++...++.++++........ +.+ .+.+.|...+.++.+..+.+.+.+...=++.-.|..|+.+++.=-
T Consensus 218 ~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRK 297 (367)
T KOG1582|consen 218 ASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARK 297 (367)
T ss_pred CCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHh
Confidence 455678888888888777655433211 011 123467777777777777666666666677789999999999999
Q ss_pred HHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhcc
Q 027608 114 AFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYK 156 (221)
Q Consensus 114 ~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~ 156 (221)
..|.+++++++.+++|.. ..-|..+.+.|+++=..++
T Consensus 298 avTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 298 AVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhhcccC
Confidence 999999999999998864 3557777889988754443
No 86
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=75.89 E-value=46 Score=28.38 Aligned_cols=187 Identities=10% Similarity=0.005 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 027608 13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF 92 (221)
Q Consensus 13 ~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~ 92 (221)
++++.+++.+++|++++-.|.- +. -|++.+-.+-... +++.-+....-+. .++.. ..-++-|.+-+..+.+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-~~-gDg~~fQw~~~~~--i~~~g~~v~~~~~-~p~f~----p~amlgG~lW~~gN~~ 71 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-DT-GDGFFFQWVMCSG--IFLVGLVVNLILG-FPPFY----PWAMLGGALWATGNIL 71 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-cC-CCcHHHHHHHHHH--HHHHHHHHHHhcC-CCcce----eHHHhhhhhhhcCcee
Confidence 3577889999999999999974 43 4775444333222 2222222111121 23221 1223334444666777
Q ss_pred HHHHhhccchhHHHHhhhhh-HHHHHHHHHH-HhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCC-C-----
Q 027608 93 SFVGIQYSSPTLSTAMLNLI-PAFTFVLAII-FRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGE-L----- 164 (221)
Q Consensus 93 ~~~gl~~t~a~~as~i~~~~-P~~~~ila~l-~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~-~----- 164 (221)
-.-.++...-+.+-++=+.. -+.-...+.+ +++++...-. ......+|+++.++|..+..+-+.+.-+.. .
T Consensus 72 ~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~-~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~ 150 (254)
T PF07857_consen 72 VVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPS-SPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETP 150 (254)
T ss_pred ehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccc-hhHHHHHHHHHHHHHHHheeeecCCCCCccccccccc
Confidence 77888888888887776653 3333444543 3333322211 124578899999999887655443221000 0
Q ss_pred ---CCCC-CCCc---ccCC-------CCchhHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 027608 165 ---SHSG-SPRR---LLLS-------PQLSWILGGFFLAAEAFMNSAWFILQVWPFNFL 209 (221)
Q Consensus 165 ---~~~~-~~~~---~~~~-------~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~ 209 (221)
.+.+ ..++ ..+. ...+.+.|..+.+.+.+.|+...+=.+.+.++-
T Consensus 151 ~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~ 209 (254)
T PF07857_consen 151 LSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHP 209 (254)
T ss_pred cccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence 0000 0000 0000 111357899999999999998887776666654
No 87
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.91 E-value=14 Score=32.09 Aligned_cols=146 Identities=20% Similarity=0.151 Sum_probs=88.0
Q ss_pred Ccccc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhh--CCC--CCC-C
Q 027608 2 GVDMG---SMRAALPSVGMVIVLLAQVSNMEVIKAAMSK-GINKYVIIVYSDALSSLFFLFCSFLFHR--SER--PQL-T 72 (221)
Q Consensus 2 ~~~~~---~~~~~~~~l~l~~~~~~wg~~~v~~K~~~~~-~~~p~~l~~~R~~~a~l~l~~~~~~~~~--~~~--~~~-~ 72 (221)
|||-. ..-.+.+.++-..+.+.-+.+.+..|..+.. +=.-+.+.++-...+.++.+|+..+.+. ..+ ++. .
T Consensus 172 GvdqE~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a 251 (347)
T KOG1442|consen 172 GVDQEGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPA 251 (347)
T ss_pred ccccccccCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchH
Confidence 77744 4556778888888999999999999975543 1234578888999999999998766321 111 233 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHh
Q 027608 73 FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (221)
Q Consensus 73 ~~~~~~~~~lg~~g~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li 152 (221)
.+-|.-+.+-|++|+.-++.-.+=+|-|||-+=-+--+.=-..=.+++..+.+|..+.-+ |-|-++.+.|...-
T Consensus 252 ~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lw------wtsn~~vLvgs~~Y 325 (347)
T KOG1442|consen 252 IKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLW------WTSNIVVLVGSLAY 325 (347)
T ss_pred HHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhhe------eeeeEEEEehhHHH
Confidence 444555556667773333333445666766432222222222334567778888876543 34555555565443
Q ss_pred h
Q 027608 153 T 153 (221)
Q Consensus 153 ~ 153 (221)
+
T Consensus 326 T 326 (347)
T KOG1442|consen 326 T 326 (347)
T ss_pred H
Confidence 3
No 88
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=68.76 E-value=87 Score=27.98 Aligned_cols=178 Identities=16% Similarity=0.093 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhh-CC----CCCCCHHHHHHHHHHHHH
Q 027608 11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHR-SE----RPQLTFSILCSFFLLSVF 85 (221)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~-~~----~~~~~~~~~~~~~~lg~~ 85 (221)
..+.+...+..++-|+.++-.|..-.-..+.+.+. ..+-+-+++|+..-.-. +. ....+.+.+....+.|++
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv---~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~l 82 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLV---QGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVL 82 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhcCCccHHHHHHH---HHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHH
Confidence 45677778888999999999998533223344333 33334455565432111 10 012234556666667776
Q ss_pred HHHHHHHHHHHhhccchhHH-HHhhhhhHHHHHHHHHHHhhh--ccccccccchhHHHHHHHHHHhHHHhhhccCCCCcC
Q 027608 86 GCSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLE--KLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIG 162 (221)
Q Consensus 86 g~~~~~~~~~gl~~t~a~~a-s~i~~~~P~~~~ila~l~~~E--~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~ 162 (221)
-.+....|=.+++|+.-+.. ++...+.-++-.++-.++.++ .+. .+.-.+..++|++++++|+.+.... |..-+.
T Consensus 83 WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~-~~~~g~~vL~Gv~v~LiGIai~g~A-G~~Ke~ 160 (344)
T PF06379_consen 83 WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELL-ATPSGQIVLLGVAVCLIGIAICGKA-GSMKEK 160 (344)
T ss_pred HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccc-cCCCchhhhhHHHHHHHHHHHHhHH-HHhhhh
Confidence 55556677778888877765 344455555555554444321 111 1112346788999999999987543 211000
Q ss_pred CCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 027608 163 ELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFIL 201 (221)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~ 201 (221)
.. ....+..+...|.++.+.|.+-=|++++-
T Consensus 161 --~~------~~~~~efn~~kGl~iAv~sGv~Sa~fn~g 191 (344)
T PF06379_consen 161 --EL------GEEAKEFNFKKGLIIAVLSGVMSACFNFG 191 (344)
T ss_pred --hh------ccchhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 00 01122334567998888887766665553
No 89
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=65.35 E-value=13 Score=27.46 Aligned_cols=117 Identities=20% Similarity=0.190 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 027608 15 VGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSF 94 (221)
Q Consensus 15 l~l~~~~~~wg~~~v~~K~~~~~~~~p~~l~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~~~~~~~~ 94 (221)
..++.+.++||.+..+.|.+.. +++..-=.. |-..-+ ..+.+.. -.+++.+..+ ++ .-....+|+
T Consensus 6 ~~lvaVgllWG~Tnplirrgs~-g~~~v~~~~-~k~~~~--------lqe~~tl-~l~w~Y~iPF-ll---NqcgSaly~ 70 (125)
T KOG4831|consen 6 DKLVAVGLLWGATNPLIRRGSL-GWDKVKSSS-RKIMIA--------LQEMKTL-FLNWEYLIPF-LL---NQCGSALYY 70 (125)
T ss_pred HHHHHHHHHHccccHHHHHHHh-hHhhccCch-HHHHHH--------HHHHHHH-HHhHHHHHHH-HH---HHhhHHHHH
Confidence 4577889999999999998753 332211100 111000 0111100 0122222211 11 233455778
Q ss_pred HHhhccchhHHHHhhh-hhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHh
Q 027608 95 VGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (221)
Q Consensus 95 ~gl~~t~a~~as~i~~-~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li 152 (221)
+-+++++-+.|.-+.+ +.-.|+.+.+..+. |+...+ ..+.|..+...|+.+.
T Consensus 71 ~tLa~a~islavpv~nsltfafta~~G~~LG-E~~~g~-----~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 71 LTLASAPISLAVPVTNSLTFAFTAIFGKALG-EETQGG-----LALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHhcCCceeeeeecchhHHHHHHHHHHHhc-cccccc-----eeehhhhHHhhhhhhe
Confidence 8899999888876654 67778888887654 555443 3578888888887654
No 90
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=62.58 E-value=33 Score=27.39 Aligned_cols=31 Identities=13% Similarity=-0.055 Sum_probs=23.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 027608 179 LSWILGGFFLAAEAFMNSAWFILQVWPFNFL 209 (221)
Q Consensus 179 ~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~ 209 (221)
.++.--.+..+.+++.++.-.++..-..||.
T Consensus 128 ~~f~qsv~~gf~a~lGfslvmvlfA~iRER~ 158 (193)
T COG4657 128 HNFLQSVVYGFGAALGFSLVMVLFAAIRERL 158 (193)
T ss_pred hhHHHHHHHHhhhHhhHHHHHHHHHHHHHHH
Confidence 3455567777889999999988888777764
No 91
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=58.93 E-value=28 Score=28.42 Aligned_cols=96 Identities=7% Similarity=-0.205 Sum_probs=58.1
Q ss_pred HHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCC---------cCCCCCCCCCCcccCC
Q 027608 106 TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPL---------IGELSHSGSPRRLLLS 176 (221)
Q Consensus 106 s~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~---------~~~~~~~~~~~~~~~~ 176 (221)
...-+..|+++++......+||.+. .|++++++...|++.-...+.+.. ...+.+. . .+...
T Consensus 8 ~~~~s~~l~~v~l~~~~~~~~~~~~------~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~-~--~~~~~ 78 (222)
T TIGR00803 8 IIFKQNNLVLIALGNLLAAGKQVTQ------LKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQ-S--SAKTL 78 (222)
T ss_pred HHHHhcchHHHHHhcccccceeeeh------HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCC-C--Ccccc
Confidence 3445678888888888888888873 478888888888764322211100 0000000 0 00001
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 027608 177 PQLSWILGGFFLAAEAFMNSAWFILQVWPFNFLF 210 (221)
Q Consensus 177 ~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~~ 210 (221)
...+...|....+.++++=++-.+++++..|+++
T Consensus 79 ~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~ 112 (222)
T TIGR00803 79 MFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGD 112 (222)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCC
Confidence 1124467888888888888888889888877653
No 92
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=54.13 E-value=33 Score=29.89 Aligned_cols=76 Identities=13% Similarity=0.084 Sum_probs=48.4
Q ss_pred HHHHHHHH--HHHHHHHHHHhhccchhHHHHhhh-hhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhh
Q 027608 79 FFLLSVFG--CSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (221)
Q Consensus 79 ~~~lg~~g--~~~~~~~~~gl~~t~a~~as~i~~-~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~ 154 (221)
.+++.... .....+.+.|+++-+++.-.-+.+ ..-.++.+-+.++++|--+...+.-.....|..+.+.|+.++..
T Consensus 214 ~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~ 292 (300)
T PF05653_consen 214 LLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSS 292 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeec
Confidence 34444444 444557788999998886554433 45567777788889985443221112345688888999988863
No 93
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=51.39 E-value=97 Score=22.86 Aligned_cols=52 Identities=15% Similarity=0.279 Sum_probs=31.6
Q ss_pred HHhhccchhHHHHhhhhh-HHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHh
Q 027608 95 VGIQYSSPTLSTAMLNLI-PAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 152 (221)
Q Consensus 95 ~gl~~t~a~~as~i~~~~-P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li 152 (221)
.|.+.-|+..--+++=.. -..-...+.++++|+++|. ...|-++.+.++.++
T Consensus 54 iG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n------~l~af~~i~~av~fi 106 (108)
T PF04342_consen 54 IGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWN------YLWAFLCILGAVYFI 106 (108)
T ss_pred hhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHH------HHHHHHHHHHhhhee
Confidence 455555666555555322 2223456788999999875 567776666665543
No 94
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=49.27 E-value=42 Score=26.19 Aligned_cols=54 Identities=20% Similarity=0.351 Sum_probs=31.3
Q ss_pred HhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608 96 GIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (221)
Q Consensus 96 gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 153 (221)
|+.-=+.-.++++.++.|+++++++.++. +.+.... ...++|++++.++.+++.
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~La-~~L~~~e---~~~~~~~~lg~~l~fl~~ 121 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAILA-QYLFFSE---LIVIFGAFLGLALGFLLA 121 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhh---HHHHHHHHHHHHHHHHHH
Confidence 34444566788999999999988876552 2222111 113455555555555443
No 95
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=47.60 E-value=71 Score=20.45 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 027608 138 KSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFNFL 209 (221)
Q Consensus 138 ~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~~~ 209 (221)
.++|.++.++|++.+... | .|.+.++++-..+|-+.-..++.+++.
T Consensus 5 ~v~G~~lv~~Gii~~~lP-G-------------------------pG~l~i~~GL~iLa~ef~wArr~l~~~ 50 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPLP-G-------------------------PGLLVIFLGLAILATEFPWARRLLRRL 50 (53)
T ss_pred hhHHHHHHHHHHHhhcCC-C-------------------------CcHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 578999999999887532 2 155566666667777777777776653
No 96
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=47.20 E-value=2.5e+02 Score=26.33 Aligned_cols=28 Identities=0% Similarity=0.044 Sum_probs=19.2
Q ss_pred HHhhccchhH------HHHhhhhhHHHHHHHHHH
Q 027608 95 VGIQYSSPTL------STAMLNLIPAFTFVLAII 122 (221)
Q Consensus 95 ~gl~~t~a~~------as~i~~~~P~~~~ila~l 122 (221)
.+-++++-.. ++.+++++|+++++++-+
T Consensus 294 fa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~ 327 (493)
T PRK15462 294 YIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVF 327 (493)
T ss_pred HHHHhccchhcceeeCHHHHHhHhHHHHHHHHHH
Confidence 3445555442 678889999999877754
No 97
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=42.27 E-value=35 Score=20.02 Aligned_cols=22 Identities=9% Similarity=-0.271 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 027608 185 GFFLAAEAFMNSAWFILQVWPFN 207 (221)
Q Consensus 185 ~ll~l~aa~~~a~y~i~~k~~~~ 207 (221)
.++=++.+.+|++|+|. |..++
T Consensus 8 Vl~Pil~A~~Wa~fNIg-~~Al~ 29 (36)
T CHL00196 8 IAAPVLAAASWALFNIG-RLAIQ 29 (36)
T ss_pred HHHHHHHHHHHHHHHhH-HHHHH
Confidence 44557889999999996 44333
No 98
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=38.41 E-value=3.1e+02 Score=25.02 Aligned_cols=54 Identities=11% Similarity=-0.049 Sum_probs=29.2
Q ss_pred HhhccchhHHHHhhhhhHHHHHHHHHHH--hhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608 96 GIQYSSPTLSTAMLNLIPAFTFVLAIIF--RLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (221)
Q Consensus 96 gl~~t~a~~as~i~~~~P~~~~ila~l~--~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 153 (221)
.....++..+++......+...+.+.+. +.||...|+ .-..|.++..+|...+.
T Consensus 288 ~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~----~~~~g~~~~~~~~~~l~ 343 (495)
T PRK14995 288 FVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRL----VATGGMALSALSFYGLA 343 (495)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH----HHHHHHHHHHHHHHHHH
Confidence 3345677788777654444443333332 345655432 33557777767765543
No 99
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=37.53 E-value=53 Score=19.28 Aligned_cols=18 Identities=11% Similarity=-0.175 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027608 185 GFFLAAEAFMNSAWFILQ 202 (221)
Q Consensus 185 ~ll~l~aa~~~a~y~i~~ 202 (221)
++.-++.+.+|++|+|..
T Consensus 8 Vl~Pil~A~gWa~fNIg~ 25 (36)
T PF06298_consen 8 VLLPILPAAGWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 445578899999999973
No 100
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=37.30 E-value=38 Score=26.08 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 027608 181 WILGGFFLAAEAFMNSAWFILQVWPFNF 208 (221)
Q Consensus 181 ~~~G~ll~l~aa~~~a~y~i~~k~~~~~ 208 (221)
..+|.++.-.=.+.|++|.+++|.+-++
T Consensus 104 ~~LgwIL~gVf~lIWslY~~~~~~l~ed 131 (138)
T PF07123_consen 104 NLLGWILLGVFGLIWSLYFVYTSTLDED 131 (138)
T ss_pred chhHHHHHHHHHHHHHHHHhhccccCCC
Confidence 3578777777788999999999887644
No 101
>PRK02237 hypothetical protein; Provisional
Probab=33.03 E-value=2e+02 Score=21.25 Aligned_cols=34 Identities=9% Similarity=0.101 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhh
Q 027608 115 FTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (221)
Q Consensus 115 ~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~ 154 (221)
...+..+.+-++|+ ++..++|..++++|+.++.+
T Consensus 72 ~Sl~W~w~vdg~~P------d~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 72 GSLLWLWVVDGVRP------DRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHHHHHHhcCcCC------ChhHHHhHHHHHHhHHHhee
Confidence 33344555555554 45679999999999988753
No 102
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=32.23 E-value=60 Score=19.54 Aligned_cols=17 Identities=12% Similarity=-0.263 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027608 185 GFFLAAEAFMNSAWFIL 201 (221)
Q Consensus 185 ~ll~l~aa~~~a~y~i~ 201 (221)
++.=++.+.+|++|+|.
T Consensus 8 Vl~Pil~A~~Wa~fNIg 24 (40)
T PRK13240 8 VLAPILAAAGWAVFNIG 24 (40)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44457889999999996
No 103
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.40 E-value=1.8e+02 Score=25.88 Aligned_cols=67 Identities=7% Similarity=0.114 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhccchhHHHHhhh-hhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608 87 CSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (221)
Q Consensus 87 ~~~~~~~~~gl~~t~a~~as~i~~-~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 153 (221)
.......+.|++.-+++..+-+.+ +--.++.+.+.+++||--.-.--.-.....|....+.|+.++.
T Consensus 238 ~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~ 305 (335)
T KOG2922|consen 238 STQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLH 305 (335)
T ss_pred HHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEee
Confidence 444557888999998887776665 3455666778899998654321111235567888888888774
No 104
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=29.38 E-value=1e+02 Score=23.20 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=20.0
Q ss_pred ccchhHHHHhhhhhHHHHHHHHHHHh
Q 027608 99 YSSPTLSTAMLNLIPAFTFVLAIIFR 124 (221)
Q Consensus 99 ~t~a~~as~i~~~~P~~~~ila~l~~ 124 (221)
-.+...++.+.+..|++.++++.++.
T Consensus 64 ~~~~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 64 ESSLLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555788899999999988877664
No 105
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=29.14 E-value=1.1e+02 Score=23.81 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=21.0
Q ss_pred HhhccchhHHHHhhhhhHHHHHHHHHHHh
Q 027608 96 GIQYSSPTLSTAMLNLIPAFTFVLAIIFR 124 (221)
Q Consensus 96 gl~~t~a~~as~i~~~~P~~~~ila~l~~ 124 (221)
++..-+...++.+.|+.|++.++.+..+.
T Consensus 68 ~i~e~~llkaa~lvYllPLl~li~ga~l~ 96 (154)
T PRK10862 68 GIAEGSLLRSALLVYMTPLVGLFLGAALF 96 (154)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556788889999999888776554
No 106
>COG2246 Predicted membrane protein [Function unknown]
Probab=29.01 E-value=2.6e+02 Score=21.31 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHHHhh--ccchhHHHHhhhhhHHHHHHHHHHHhhhccccccc
Q 027608 71 LTFSILCSFFLLSVFG-CSSQIFSFVGIQ--YSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENK 133 (221)
Q Consensus 71 ~~~~~~~~~~~lg~~g-~~~~~~~~~gl~--~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~ 133 (221)
...+.+.++...|.++ ..+...+..-.+ ..+...|.++.. .+.+...++.+++.|.+.+
T Consensus 8 ~~~~~~lrF~~VG~~~t~V~~~~~~ll~~~~~~~~~~A~~~a~----~~~ii~sf~~N~~wTF~~~ 69 (139)
T COG2246 8 FTLSRLLRFAIVGGLGTLVDFAVLWLLVKALGVPYALANAIAY----EAAIIFSFVLNRRWTFRDR 69 (139)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHHHhcccchHHHHHHHH----HHHHHHHHHHHceeeEeec
Confidence 3456788899999999 666655554444 345555555544 2233344556677777665
No 107
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=28.83 E-value=3.2e+02 Score=22.23 Aligned_cols=138 Identities=15% Similarity=0.085 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHHhhhc--cccccccchhHHHHHHHHHHhH
Q 027608 73 FSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK--LNWENKSSQAKSLGTFASIGGA 149 (221)
Q Consensus 73 ~~~~~~~~~lg~~g-~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~--~~~~~~~~~~~~~Gi~l~~~Gv 149 (221)
+++..---.+|+.. .........++++.++.---=+..+.|+..-+=..+-..|. -...+..+..+--..+..++.+
T Consensus 25 ~~~I~~GqylG~~~Lv~~Sl~~~~~l~~ip~~wiLGlLGliPI~lGi~~l~~~~~~~e~~~~~~~~~~~~~~~i~~Va~i 104 (191)
T PF03596_consen 25 RRQIVIGQYLGFTILVLASLLGAFGLLFIPPEWILGLLGLIPIYLGIKALFSGEDDDEEEAEEKLNSPKSNSLILTVAAI 104 (191)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccchhHHhhhh
Confidence 34443334566666 66666667788888877553346789998877654432211 1111110001111222333333
Q ss_pred HHhhhccCCCCcCCCCCCCCCC-cccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhccccccccccc
Q 027608 150 FVVTFYKGPPLIGELSHSGSPR-RLLLSPQLSWILGGFFLAAEAFMNSAWFILQVW----PFNFLFYKAQGVV 217 (221)
Q Consensus 150 ~li~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~----~~~~~~~~~~~~~ 217 (221)
.+.. +|.++... .|- .+.+..........++++.+..|+..|.+...+ .++||.....++|
T Consensus 105 TiAn--GgDNigIY-----iP~Fa~~s~~~l~v~l~vF~ilv~v~c~la~~l~~~p~i~~~leryg~~l~p~v 170 (191)
T PF03596_consen 105 TIAN--GGDNIGIY-----IPLFASLSLAELIVILIVFLILVGVWCFLAYKLARIPIIAEFLERYGRWLVPIV 170 (191)
T ss_pred hhhc--CCCeEEEe-----ehhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhcccHHHHH
Confidence 3322 22221100 000 000111112246788889999999999887644 4566766666554
No 108
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=27.88 E-value=77 Score=23.36 Aligned_cols=35 Identities=9% Similarity=0.156 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhh
Q 027608 114 AFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (221)
Q Consensus 114 ~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~ 154 (221)
+...+..+.+-++|+ ++..++|..++++|+.++.+
T Consensus 69 ~~Sl~W~w~vdg~~P------d~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 69 VASLLWGWLVDGVRP------DRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred HHHHHHHhhhcCcCC------ChHHHHhHHHHHHhHHheEe
Confidence 344444555555554 45689999999999988853
No 109
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=26.27 E-value=3.5e+02 Score=21.87 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHhhhcccc-----ccc--cchhHHHHHHHHHHhHHHhh
Q 027608 110 NLIPAFTFVLAIIFRLEKLNW-----ENK--SSQAKSLGTFASIGGAFVVT 153 (221)
Q Consensus 110 ~~~P~~~~ila~l~~~E~~~~-----~~~--~~~~~~~Gi~l~~~Gv~li~ 153 (221)
...|+...++++...+||... ++| ....++.+.++.+.|+.++.
T Consensus 160 ~~~~~~~pll~~~~~~~r~~~~l~r~~~wl~~~~~~i~~~i~~i~G~~l~~ 210 (214)
T PF11139_consen 160 ASLPALLPLLAYLVAPERAEPWLERLRSWLRRHSRQILAVILLIVGALLLG 210 (214)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 467888888888888877621 111 22356789999999998874
No 110
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=25.52 E-value=3.1e+02 Score=21.01 Aligned_cols=28 Identities=14% Similarity=-0.046 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 027608 182 ILGGFFLAAEAFMNSAWFILQVWPFNFL 209 (221)
Q Consensus 182 ~~G~ll~l~aa~~~a~y~i~~k~~~~~~ 209 (221)
....+..+.++..|.-|...+||+.+.+
T Consensus 120 i~~l~~~li~a~IwipYf~~S~RVK~TF 147 (149)
T PF10754_consen 120 IRELLRSLIAAAIWIPYFLRSKRVKNTF 147 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhc
Confidence 4567778999999999999999986643
No 111
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=25.21 E-value=2.1e+02 Score=24.39 Aligned_cols=54 Identities=11% Similarity=0.057 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CChHHHHHHHH----HHHHHHHHHHHHH
Q 027608 9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKG-------INKYVIIVYSD----ALSSLFFLFCSFL 62 (221)
Q Consensus 9 ~~~~~~l~l~~~~~~wg~~~v~~K~~~~~~-------~~p~~l~~~R~----~~a~l~l~~~~~~ 62 (221)
+|..+..+.+++.+++|++++=.+...+++ -+++...+..+ +.+.+.++..+..
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~ 244 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCII 244 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHh
Confidence 566788888999999999999999887653 25565566554 3345555555544
No 112
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=24.72 E-value=2e+02 Score=21.11 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhccchhHHHHhhhhhHHHHHHHHHHH
Q 027608 87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIF 123 (221)
Q Consensus 87 ~~~~~~~~~gl~~t~a~~as~i~~~~P~~~~ila~l~ 123 (221)
.++..+...|+.-.+|++++=..-..-++..+.++++
T Consensus 19 ~~Y~~l~~~G~d~~~AGi~sq~~lv~glvgW~~sYlf 55 (104)
T PF11460_consen 19 LLYGGLQAAGLDSLSAGIWSQALLVLGLVGWVSSYLF 55 (104)
T ss_pred HHHHHHHHcCCCchhhhHHHHHHHHHHHHHHHhHHHh
Confidence 7788888899999999988755554455667777776
No 113
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=24.65 E-value=4.8e+02 Score=22.91 Aligned_cols=131 Identities=18% Similarity=0.176 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHH--Hh----hhCC----CCCCCHHHHHHHHHHH
Q 027608 15 VGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSF--LF----HRSE----RPQLTFSILCSFFLLS 83 (221)
Q Consensus 15 l~l~~~~~~wg~~~v~~K~~~~-~~~~p~~l~~~R~~~a~l~l~~~~~--~~----~~~~----~~~~~~~~~~~~~~lg 83 (221)
..+..+.+.=+...+.-....+ .|=+|-+..++--++....++...- .. .++. -|....+ ......=
T Consensus 167 ~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~--vP~~~~y 244 (330)
T KOG1583|consen 167 ALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFK--VPSMWVY 244 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCcc--ccHHHHH
Confidence 3344444444444444444443 3567888888888877655443210 00 0000 0111111 1222223
Q ss_pred HHH-HHHHHHHHHHhhccchhHHH----HhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhh
Q 027608 84 VFG-CSSQIFSFVGIQYSSPTLST----AMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 153 (221)
Q Consensus 84 ~~g-~~~~~~~~~gl~~t~a~~as----~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~ 153 (221)
++. ++.|++...|+...++-.+| +..++=-.+..+++.+.++.++++. .++|..+.+.|.++-+
T Consensus 245 Ll~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~------h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 245 LLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPW------HWLGAALVFFGTLLFA 313 (330)
T ss_pred HHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHH------HHHHHHHHHHHHHHHH
Confidence 345 78888888888776655554 4455566777888999999999874 6899999999998764
No 114
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=24.46 E-value=61 Score=24.33 Aligned_cols=27 Identities=15% Similarity=0.025 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027608 181 WILGGFFLAAEAFMNSAWFILQVWPFN 207 (221)
Q Consensus 181 ~~~G~ll~l~aa~~~a~y~i~~k~~~~ 207 (221)
..+|.++.-.=.+.|++|.+++|.+-+
T Consensus 93 ~~LgwIL~gVf~liw~ly~~~~~~l~~ 119 (128)
T PLN00077 93 NLLGWILLGVFGLIWSLYTTYTSDLPE 119 (128)
T ss_pred chhhHHHHhHHHHHHHHHhheecccCC
Confidence 357877777778999999999988743
No 115
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=23.45 E-value=5.1e+02 Score=22.73 Aligned_cols=77 Identities=8% Similarity=0.027 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHH-HHHHHHH-HHHh-------hccchhHHHHhhhhhHHHHHHHHHHH--hhhccccccccchhHH
Q 027608 71 LTFSILCSFFLLSVFG-CSSQIFS-FVGI-------QYSSPTLSTAMLNLIPAFTFVLAIIF--RLEKLNWENKSSQAKS 139 (221)
Q Consensus 71 ~~~~~~~~~~~lg~~g-~~~~~~~-~~gl-------~~t~a~~as~i~~~~P~~~~ila~l~--~~E~~~~~~~~~~~~~ 139 (221)
.++++|+.+..+++.. .....-+ ..++ ...+++..+.......+...+.+.+. +-||.++|+ .-.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~----~~~ 89 (394)
T PRK10213 14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRY----VVI 89 (394)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHH----HHH
Confidence 4567777666665553 2222111 1111 23566666666665555555544444 347776553 223
Q ss_pred HHHHHHHHhHHH
Q 027608 140 LGTFASIGGAFV 151 (221)
Q Consensus 140 ~Gi~l~~~Gv~l 151 (221)
.+.++..++.++
T Consensus 90 ~~~~~~~~~~~~ 101 (394)
T PRK10213 90 LFAVLLTLSCLL 101 (394)
T ss_pred HHHHHHHHHHHH
Confidence 455554444433
No 116
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=21.40 E-value=1.9e+02 Score=17.23 Aligned_cols=27 Identities=11% Similarity=0.141 Sum_probs=16.5
Q ss_pred CCCCHHHHHHHHHHHHHH-HHHHHHHHH
Q 027608 69 PQLTFSILCSFFLLSVFG-CSSQIFSFV 95 (221)
Q Consensus 69 ~~~~~~~~~~~~~lg~~g-~~~~~~~~~ 95 (221)
|..+||.+..+++.|..+ .....++=+
T Consensus 4 Pdm~RR~lmN~ll~Gava~~a~~~lyP~ 31 (39)
T PF08802_consen 4 PDMSRRQLMNLLLGGAVAVPAGGMLYPY 31 (39)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHhhHHHHHHHHhhhh
Confidence 445678888888888777 544444433
No 117
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=21.23 E-value=8e+02 Score=24.29 Aligned_cols=110 Identities=8% Similarity=0.072 Sum_probs=55.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhhCC---CCC--CCHHHHHHHHHHHHHH-HHHHHHHHHHhh------cc----ch
Q 027608 39 INKYVIIVYSDALSSLFFLFCSFLFHRSE---RPQ--LTFSILCSFFLLSVFG-CSSQIFSFVGIQ------YS----SP 102 (221)
Q Consensus 39 ~~p~~l~~~R~~~a~l~l~~~~~~~~~~~---~~~--~~~~~~~~~~~lg~~g-~~~~~~~~~gl~------~t----~a 102 (221)
++|+++...-++--.. -+.+ ..++.. +|+ ...+.+......|.+. ......+++++. .. +.
T Consensus 625 l~~~~il~~~l~~d~~-~~~l--~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (755)
T TIGR01647 625 FPPIMVVIIAILNDGT-IMTI--AYDNVKPSKLPQRWNLREVFTMSTVLGIYLVISTFLLLAIALDTSFFIDKFGLQLLH 701 (755)
T ss_pred hhHHHHHHHHHHHhHh-Hhhc--cCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhcccccccH
Confidence 7788777776665542 1111 112211 111 1123445566777777 665666666654 11 12
Q ss_pred hHHHHhhhhhHHHHHHHHH-HHhhhccccccccchhHHHHHHHHHHhHHH
Q 027608 103 TLSTAMLNLIPAFTFVLAI-IFRLEKLNWENKSSQAKSLGTFASIGGAFV 151 (221)
Q Consensus 103 ~~as~i~~~~P~~~~ila~-l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~l 151 (221)
..+.....+.=+++-.+-. ..+.++..++++|++.-.+..++..+-..+
T Consensus 702 ~~~~t~~f~~~~~~~~~~~~~~r~~~~~~~~~p~~~l~~~~~~~~~~~~~ 751 (755)
T TIGR01647 702 GNLQSLIYLQVSISGQATIFVTRTHGFFWSERPGKLLFIAFVIAQIIATF 751 (755)
T ss_pred hhhHHHHHHHHHHHHHHHHheeccCCCCcccCCcHHHHHHHHHHHHHHHH
Confidence 2232333333333333333 335677778888887766666666544433
No 118
>PF11361 DUF3159: Protein of unknown function (DUF3159); InterPro: IPR016566 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=20.51 E-value=4.7e+02 Score=21.19 Aligned_cols=81 Identities=15% Similarity=0.023 Sum_probs=42.6
Q ss_pred cchhHHHHhhhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCCc
Q 027608 100 SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQL 179 (221)
Q Consensus 100 t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~ 179 (221)
+..-..+++.+..-......-.+..||+++. -+.|.+-..+++.+.. ..|+ ..+
T Consensus 24 ~~~L~~aliaA~~~a~~~~v~RL~r~~~~~~-------a~~gl~gV~i~a~~A~-~tG~------------------A~~ 77 (187)
T PF11361_consen 24 TFGLTPALIAALAVAVVIVVWRLVRRESVQP-------ALSGLFGVAISAAIAW-RTGS------------------AKD 77 (187)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHhcCccHH-------HHHHHHHHHHHHHHHH-HHCC------------------hhh
Confidence 4444455555544445555566777787642 2444444444443332 2231 112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027608 180 SWILGGFFLAAEAFMNSAWFILQVWPF 206 (221)
Q Consensus 180 ~~~~G~ll~l~aa~~~a~y~i~~k~~~ 206 (221)
-+..|.+.-...+..+.+..+..+++.
T Consensus 78 ~Fl~gi~~n~~~~~~~l~S~lvr~Plv 104 (187)
T PF11361_consen 78 FFLPGIWTNAVYAVVFLVSVLVRWPLV 104 (187)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 345677777777777777666655543
No 119
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=20.47 E-value=51 Score=22.02 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHhhccchh
Q 027608 74 SILCSFFLLSVFG--CSSQIFSFVGIQYSSPT 103 (221)
Q Consensus 74 ~~~~~~~~lg~~g--~~~~~~~~~gl~~t~a~ 103 (221)
+.|.++-+-+++| .+.+.++..++.|.+|-
T Consensus 26 ~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~ 57 (65)
T PF08370_consen 26 SYWYWIGVGALLGFIVLFNILFTLALTYLNPL 57 (65)
T ss_pred CcEEeehHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3455666666777 78889999999998763
Done!