Query 027608
Match_columns 221
No_of_seqs 195 out of 1338
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 21:15:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.5 2.1E-07 7.3E-12 70.9 7.3 69 81-155 34-104 (137)
2 3b5d_A Multidrug transporter E 98.5 5.7E-07 2E-11 65.9 9.2 68 81-154 34-103 (110)
3 1q90_R Cytochrome B6-F complex 16.5 1.9E+02 0.0064 17.3 3.6 25 69-93 7-32 (49)
4 3mp7_B Preprotein translocase 8.3 1.9E+02 0.0065 18.0 1.9 25 126-150 23-47 (61)
5 2hac_A T-cell surface glycopro 7.4 2.7E+02 0.0093 15.2 1.9 17 114-130 14-30 (33)
6 3b9w_A Ammonium transporter fa 7.3 1.1E+03 0.037 20.3 12.7 22 76-97 176-198 (407)
7 1rh5_B Preprotein translocase 5.2 2.8E+02 0.0096 18.0 1.5 24 126-149 27-50 (74)
8 3arc_L Photosystem II reaction 5.1 5.1E+02 0.017 14.3 3.6 18 11-28 18-35 (37)
9 1pi7_A VPU protein, U ORF prot 3.7 6.8E+02 0.023 13.7 3.2 24 185-208 12-35 (36)
10 4aps_A DI-OR tripeptide H+ sym 3.3 1.8E+03 0.061 17.9 13.1 131 63-219 2-149 (491)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.53 E-value=2.1e-07 Score=70.89 Aligned_cols=69 Identities=13% Similarity=0.216 Sum_probs=52.8
Q ss_pred HHHHHH-HHHHHHHHHHhhccchhHHHHh-hhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhhc
Q 027608 81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY 155 (221)
Q Consensus 81 ~lg~~g-~~~~~~~~~gl~~t~a~~as~i-~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~~ 155 (221)
++++++ .+++++++.++++.+++.+..+ .++.|++++++++++++|+++++ +++|+++.++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcC
Confidence 577777 9999999999999999999888 89999999999999999999986 589999999999998754
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.52 E-value=5.7e-07 Score=65.89 Aligned_cols=68 Identities=13% Similarity=0.219 Sum_probs=61.6
Q ss_pred HHHHHH-HHHHHHHHHHhhccchhHHHHh-hhhhHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHhHHHhhh
Q 027608 81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (221)
Q Consensus 81 ~lg~~g-~~~~~~~~~gl~~t~a~~as~i-~~~~P~~~~ila~l~~~E~~~~~~~~~~~~~~Gi~l~~~Gv~li~~ 154 (221)
+.+.++ ..++.++..++++.+.+.+..+ ..+.|+++.++++++++|+++++ |++|+.+.++|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 567777 8899999999999999999877 79999999999999999999875 69999999999998864
No 3
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=16.53 E-value=1.9e+02 Score=17.26 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=16.7
Q ss_pred CCCCHHHHHHHHHHHHHH-HHHHHHH
Q 027608 69 PQLTFSILCSFFLLSVFG-CSSQIFS 93 (221)
Q Consensus 69 ~~~~~~~~~~~~~lg~~g-~~~~~~~ 93 (221)
+..+||.+...+.+|..+ .....++
T Consensus 7 pdm~RRqfln~l~~G~~a~~a~~~~~ 32 (49)
T 1q90_R 7 PDMNKRNIMNLILAGGAGLPITTLAL 32 (49)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788888888888776 4333333
No 4
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=8.35 E-value=1.9e+02 Score=18.03 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=15.1
Q ss_pred hccccccccchhHHHHHHHHHHhHH
Q 027608 126 EKLNWENKSSQAKSLGTFASIGGAF 150 (221)
Q Consensus 126 E~~~~~~~~~~~~~~Gi~l~~~Gv~ 150 (221)
.|++++......+..|+.+.+.|.+
T Consensus 23 ~KPd~~Ef~~iak~~~iG~~i~G~i 47 (61)
T 3mp7_B 23 KKPNWATYKRAAKITGLGIILIGLI 47 (61)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555444456677777777753
No 5
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=7.44 E-value=2.7e+02 Score=15.16 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhhcccc
Q 027608 114 AFTFVLAIIFRLEKLNW 130 (221)
Q Consensus 114 ~~~~ila~l~~~E~~~~ 130 (221)
+...++..++.+||++.
T Consensus 14 iYgii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 14 IYGVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 34456667788888764
No 6
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=7.28 E-value=1.1e+03 Score=20.34 Aligned_cols=22 Identities=14% Similarity=-0.170 Sum_probs=11.8
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHh
Q 027608 76 LCSFFLLSVFG-CSSQIFSFVGI 97 (221)
Q Consensus 76 ~~~~~~lg~~g-~~~~~~~~~gl 97 (221)
-..+..+|.+- ...-..+|-|+
T Consensus 176 n~~~~~lGt~lLW~GWfGFN~Gl 198 (407)
T 3b9w_A 176 SDRFSMLGSMVLWLFWPSFATAI 198 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhhhhhh
Confidence 33455666554 44444566664
No 7
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=5.25 E-value=2.8e+02 Score=17.98 Aligned_cols=24 Identities=21% Similarity=0.017 Sum_probs=12.7
Q ss_pred hccccccccchhHHHHHHHHHHhH
Q 027608 126 EKLNWENKSSQAKSLGTFASIGGA 149 (221)
Q Consensus 126 E~~~~~~~~~~~~~~Gi~l~~~Gv 149 (221)
.|++++......+..|+.+.+.|.
T Consensus 27 ~KPdr~EF~~iak~~~iG~~imG~ 50 (74)
T 1rh5_B 27 KKPTKDEYLAVAKVTALGISLLGI 50 (74)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344444433344566666666665
No 8
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=5.13 E-value=5.1e+02 Score=14.31 Aligned_cols=18 Identities=17% Similarity=0.097 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 027608 11 ALPSVGMVIVLLAQVSNM 28 (221)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~ 28 (221)
..+.+..+..++.++..+
T Consensus 18 y~GLLlifvlavlFssyf 35 (37)
T 3arc_L 18 YLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhc
Confidence 445555555666666554
No 9
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=3.68 E-value=6.8e+02 Score=13.73 Aligned_cols=24 Identities=8% Similarity=-0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc
Q 027608 185 GFFLAAEAFMNSAWFILQVWPFNF 208 (221)
Q Consensus 185 ~ll~l~aa~~~a~y~i~~k~~~~~ 208 (221)
....+++.+.|.+-.+--||..|+
T Consensus 12 ivalIiaIVVWtiv~ieYrk~~kQ 35 (36)
T 1pi7_A 12 VVAIIIAIVVWSIVIIEGRGGKKK 35 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=3.29 E-value=1.8e+03 Score=17.94 Aligned_cols=131 Identities=9% Similarity=-0.056 Sum_probs=0.0
Q ss_pred hhhCCCCCCCHHHHHHHHHHHHHH-HHHHHH------HHHHh-----hccchhHHHHhhhhhHHHHHHHHHHH--hhhc-
Q 027608 63 FHRSERPQLTFSILCSFFLLSVFG-CSSQIF------SFVGI-----QYSSPTLSTAMLNLIPAFTFVLAIIF--RLEK- 127 (221)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~lg~~g-~~~~~~------~~~gl-----~~t~a~~as~i~~~~P~~~~ila~l~--~~E~- 127 (221)
.+..+..+..++.+..+....++. ..++.. |.... ...+....+.+.....+...+.+.+. +-||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 81 (491)
T 4aps_A 2 EDKGKTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRI 81 (491)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred cccccccchhHHHHHHHHHHhHHHhhhccCCCCcCCCCCCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027608 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQVWPFN 207 (221)
Q Consensus 128 ~~~~~~~~~~~~~Gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~i~~k~~~~ 207 (221)
..+| +.-.+|.++..+|.++.. ...+.+.+-....+.+...-..+.....-+.+
T Consensus 82 ~g~r----~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 135 (491)
T 4aps_A 82 IGAR----PAVFWGGVLIMLGHIVLA----------------------LPFGASALFGSIILIIIGTGFLKPNVSTLVGT 135 (491)
T ss_dssp SCHH----HHHHHHHHHHHHHHHHHH----------------------SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccch----HHHHHHHHHHHHHHHHHH----------------------HhhhHHHHHHHHHHHHHHHHhccchHHHHHHH
Q ss_pred cccccc--cccccc
Q 027608 208 FLFYKA--QGVVKS 219 (221)
Q Consensus 208 ~~~~~~--~~~~~~ 219 (221)
.+|+.. ++...+
T Consensus 136 ~~~~~~~~r~~~~~ 149 (491)
T 4aps_A 136 LYDEHDRRRDAGFS 149 (491)
T ss_dssp HSSSCTTHHHHHHH
T ss_pred HcCcccccceeeeh
Done!