Query 027608
Match_columns 221
No_of_seqs 195 out of 1338
Neff 7.8
Searched_HMMs 13730
Date Mon Mar 25 21:15:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027608.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027608hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 7.9 1.3E+02 0.0095 14.0 2.9 19 182-200 2-20 (27)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 6.6 1.8E+02 0.013 14.7 3.3 18 11-28 18-35 (37)
3 d1rh5b_ f.23.28.1 (B:) Preprot 5.7 1.3E+02 0.0092 17.1 1.5 23 127-149 17-39 (56)
4 d1q90r_ f.23.12.1 (R:) ISP sub 4.3 2.9E+02 0.021 14.2 3.6 18 69-86 5-22 (39)
5 d1zs4a1 a.35.1.9 (A:4-81) Regu 2.5 1.9E+02 0.014 17.3 0.3 26 1-26 30-59 (78)
6 d1gl4a1 d.22.1.2 (A:399-631) D 2.4 2.6E+02 0.019 20.4 1.1 36 95-131 43-78 (233)
7 d1ppjd2 f.23.11.1 (D:196-241) 2.1 5.3E+02 0.038 13.5 1.9 18 48-65 12-29 (46)
8 d1v54m_ f.23.7.1 (M:) Mitochon 1.6 7.1E+02 0.052 12.9 2.0 14 138-151 15-28 (43)
9 d1wpga4 f.33.1.1 (A:1-124,A:24 1.6 1.6E+03 0.11 16.9 13.2 63 38-100 264-337 (472)
10 d2e74d2 f.23.12.1 (D:12-45) IS 1.5 6.5E+02 0.048 12.1 3.8 13 21-33 18-30 (34)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.89 E-value=1.3e+02 Score=14.03 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027608 182 ILGGFFLAAEAFMNSAWFI 200 (221)
Q Consensus 182 ~~G~ll~l~aa~~~a~y~i 200 (221)
.+|.+..-++.+.||.|--
T Consensus 2 vlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 3678888888888998843
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.65 E-value=1.8e+02 Score=14.67 Aligned_cols=18 Identities=17% Similarity=0.097 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 027608 11 ALPSVGMVIVLLAQVSNM 28 (221)
Q Consensus 11 ~~~~l~l~~~~~~wg~~~ 28 (221)
..+.+..+..+++++.++
T Consensus 18 y~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 18 YLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345555555566666554
No 3
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.67 E-value=1.3e+02 Score=17.13 Aligned_cols=23 Identities=22% Similarity=-0.000 Sum_probs=10.6
Q ss_pred ccccccccchhHHHHHHHHHHhH
Q 027608 127 KLNWENKSSQAKSLGTFASIGGA 149 (221)
Q Consensus 127 ~~~~~~~~~~~~~~Gi~l~~~Gv 149 (221)
|+++++.....++.|+.+.+.|.
T Consensus 17 KP~~~Ef~~ia~v~~iG~~i~G~ 39 (56)
T d1rh5b_ 17 KPTKDEYLAVAKVTALGISLLGI 39 (56)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 44444433334455555555554
No 4
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.29 E-value=2.9e+02 Score=14.23 Aligned_cols=18 Identities=17% Similarity=0.288 Sum_probs=12.8
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 027608 69 PQLTFSILCSFFLLSVFG 86 (221)
Q Consensus 69 ~~~~~~~~~~~~~lg~~g 86 (221)
+...+|.+..++++|...
T Consensus 5 pDMgrR~~MNLll~G~~~ 22 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAG 22 (39)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccc
Confidence 455677777888777665
No 5
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]}
Probab=2.48 E-value=1.9e+02 Score=17.28 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=14.6
Q ss_pred CCccccchhhhH----HHHHHHHHHHHHHH
Q 027608 1 MGVDMGSMRAAL----PSVGMVIVLLAQVS 26 (221)
Q Consensus 1 ~~~~~~~~~~~~----~~l~l~~~~~~wg~ 26 (221)
||||-.+-.||+ +-..++++.+=||.
T Consensus 30 mGv~esqiSRwK~~f~~q~smlLAvLE~GV 59 (78)
T d1zs4a1 30 VGVDKSQISRWKRDWIPKFSMLLAVLEWGV 59 (78)
T ss_dssp HTSCHHHHHHHHHHTHHHHHHHHHHHTTCC
T ss_pred hCCCHHHHHHHHHhhHHHHHHHHHHHHhcc
Confidence 567755544544 44556666666653
No 6
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.41 E-value=2.6e+02 Score=20.38 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=29.0
Q ss_pred HHhhccchhHHHHhhhhhHHHHHHHHHHHhhhccccc
Q 027608 95 VGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131 (221)
Q Consensus 95 ~gl~~t~a~~as~i~~~~P~~~~ila~l~~~E~~~~~ 131 (221)
.+++..++..+..+..+.|+...+ +|+|=+|.-...
T Consensus 43 taIs~IP~~~G~~L~~L~~ig~~i-gWlFA~e~~~a~ 78 (233)
T d1gl4a1 43 TAISTIPETVGYSLLPLAPIGGII-GWMFAVEQDGFK 78 (233)
T ss_dssp EEEESCCHHHHGGGTTCTHHHHHH-HHHTCEECTTCC
T ss_pred EEccCCChhHhhhhhhhhhhcCce-eeeEEeecCCcc
Confidence 356778999999999999987765 899988887654
No 7
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.13 E-value=5.3e+02 Score=13.50 Aligned_cols=18 Identities=17% Similarity=0.098 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 027608 48 SDALSSLFFLFCSFLFHR 65 (221)
Q Consensus 48 R~~~a~l~l~~~~~~~~~ 65 (221)
+..+-..++..++++.+|
T Consensus 12 Kv~~~l~~l~~l~yy~KR 29 (46)
T d1ppjd2 12 KMLLMMGLLLPLVYAMKR 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333434444444444333
No 8
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.63 E-value=7.1e+02 Score=12.87 Aligned_cols=14 Identities=7% Similarity=0.192 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhHHH
Q 027608 138 KSLGTFASIGGAFV 151 (221)
Q Consensus 138 ~~~Gi~l~~~Gv~l 151 (221)
+.+|+...|++.+.
T Consensus 15 ~aigLt~~f~~~L~ 28 (43)
T d1v54m_ 15 QAIGLSVTFLSFLL 28 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 56777777766643
No 9
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=1.61 E-value=1.6e+03 Score=16.87 Aligned_cols=63 Identities=10% Similarity=0.071 Sum_probs=34.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHH------hhhCCC----CCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Q 027608 38 GINKYVIIVYSDALSSLFFLFCSFL------FHRSER----PQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYS 100 (221)
Q Consensus 38 ~~~p~~l~~~R~~~a~l~l~~~~~~------~~~~~~----~~~~~~~~~~~~~lg~~g-~~~~~~~~~gl~~t 100 (221)
-++|.++.+.-+..-.+.-+.+..= .+|+.+ +-++++.+.++...|... ......+++...+.
T Consensus 264 pl~~~qILwinli~d~lpaiaL~~ep~d~~iM~~~Pr~~~~~li~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~ 337 (472)
T d1wpga4 264 ALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYA 337 (472)
T ss_dssp SCCHHHHHHHHHTTTHHHHHHHTTCCCCSGGGGSCCCCTTCCSSCTHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred cccHHHHHHHHHHhHHHHHHHHhcCCCchhhhcCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4778888887776654433332210 111111 123566677777777666 66666666665543
No 10
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=1.54 E-value=6.5e+02 Score=12.09 Aligned_cols=13 Identities=15% Similarity=-0.044 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 027608 21 LLAQVSNMEVIKA 33 (221)
Q Consensus 21 ~~~wg~~~v~~K~ 33 (221)
...-|..+.++|.
T Consensus 18 g~alg~lypvvky 30 (34)
T d2e74d2 18 GVALGALYPLVKY 30 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHhh
Confidence 3445555666554
Done!