BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027609
         (221 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YUI|A Chain A, Solution Structure Of The N-Terminal Domain In Human
           Cytokine-Induced Apoptosis Inhibitor Anamorsin
          Length = 182

 Score = 32.7 bits (73), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 152 VVAEVDRILRPDGNLILRDDAETIVEVEDLVKS 184
           ++AE+ RILRP G L L++  ET V+    VK+
Sbjct: 86  ILAEIARILRPGGCLFLKEPVETAVDNNSKVKT 118


>pdb|2LD4|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
           Anamorsin
          Length = 176

 Score = 32.7 bits (73), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 152 VVAEVDRILRPDGNLILRDDAETIVEVEDLVKS 184
           ++AE+ RILRP G L L++  ET V+    VK+
Sbjct: 83  ILAEIARILRPGGCLFLKEPVETAVDNNSKVKT 115


>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis At 2.1 A Resolution
 pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis At 2.1 A Resolution
 pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis
 pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis
          Length = 239

 Score = 27.7 bits (60), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 7/42 (16%)

Query: 132 TYDLL---HADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170
           ++D++   +A H FS ++K+++    EV R+L+ DG  +L D
Sbjct: 87  SFDIITCRYAAHHFSDVRKAVR----EVARVLKQDGRFLLVD 124


>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
           And Adp
 pdb|3THX|B Chain B, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
           And Adp
 pdb|3THY|B Chain B, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
           And Adp
 pdb|3THZ|B Chain B, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
           And Adp
          Length = 918

 Score = 26.9 bits (58), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query: 107 LPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKS---------LKAVVAEVD 157
           LP I ERGL  +YH  C +   +     L H    F  I  +         L+ V+ E+ 
Sbjct: 402 LPDI-ERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVNSHIQSDLLRTVILEIP 460

Query: 158 RILRPDGNL--ILRDDAETIVEVEDLVKSL 185
            +L P  +   IL + A  + +  +L K L
Sbjct: 461 ELLSPVEHYLKILNEQAAKVGDKTELFKDL 490


>pdb|3ABI|A Chain A, Crystal Structure Of L-Lysine Dehydrogenase From
           Hyperthermophilic Archaeon Pyrococcus Horikoshii
 pdb|3ABI|B Chain B, Crystal Structure Of L-Lysine Dehydrogenase From
           Hyperthermophilic Archaeon Pyrococcus Horikoshii
          Length = 365

 Score = 26.9 bits (58), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDDAE 173
           F +IK ++K+ V  VD    P+  L LRD+AE
Sbjct: 91  FKSIKAAIKSKVDMVDVSFMPENPLELRDEAE 122


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,392,065
Number of Sequences: 62578
Number of extensions: 319187
Number of successful extensions: 674
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 7
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)