Query 027609
Match_columns 221
No_of_seqs 194 out of 658
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 12:30:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 3.3E-63 7.2E-68 468.8 15.9 202 1-205 297-506 (506)
2 PF03141 Methyltransf_29: Puta 100.0 1.5E-38 3.3E-43 301.3 8.1 194 9-207 41-262 (506)
3 PF08241 Methyltransf_11: Meth 99.7 7.2E-18 1.6E-22 122.3 6.3 89 75-168 1-95 (95)
4 COG2226 UbiE Methylase involve 99.7 1.3E-17 2.8E-22 146.9 8.8 115 49-172 36-158 (238)
5 PF01209 Ubie_methyltran: ubiE 99.6 1.7E-16 3.7E-21 138.8 6.4 116 49-172 32-155 (233)
6 PLN02233 ubiquinone biosynthes 99.6 1.2E-15 2.5E-20 134.8 8.6 99 70-171 73-183 (261)
7 PF13489 Methyltransf_23: Meth 99.6 6.1E-16 1.3E-20 122.7 3.4 96 69-173 21-118 (161)
8 PRK14103 trans-aconitate 2-met 99.6 6.8E-15 1.5E-19 128.3 8.4 101 66-170 25-126 (255)
9 PRK10258 biotin biosynthesis p 99.5 4E-14 8.7E-19 122.6 9.1 98 67-170 39-140 (251)
10 PLN02244 tocopherol O-methyltr 99.5 3.6E-14 7.8E-19 129.7 8.2 96 69-170 117-223 (340)
11 PLN02396 hexaprenyldihydroxybe 99.5 2.3E-14 4.9E-19 131.1 6.8 98 70-172 131-237 (322)
12 PRK11036 putative S-adenosyl-L 99.5 4.6E-14 1E-18 123.2 7.7 98 69-170 43-149 (255)
13 PRK01683 trans-aconitate 2-met 99.5 3.1E-13 6.7E-18 117.4 10.4 98 68-170 29-130 (258)
14 TIGR00452 methyltransferase, p 99.5 1.9E-13 4.2E-18 124.6 8.7 114 51-170 103-225 (314)
15 PRK05785 hypothetical protein; 99.4 1.7E-13 3.7E-18 118.8 7.3 110 50-169 35-147 (226)
16 PRK15068 tRNA mo(5)U34 methylt 99.4 3.2E-13 7E-18 123.0 8.8 100 66-169 118-225 (322)
17 PRK00107 gidB 16S rRNA methylt 99.4 2.9E-12 6.2E-17 108.9 13.5 147 50-206 27-187 (187)
18 PTZ00098 phosphoethanolamine N 99.4 2.4E-13 5.1E-18 120.2 7.1 100 68-171 50-157 (263)
19 PF12847 Methyltransf_18: Meth 99.4 3.2E-13 6.9E-18 102.1 6.8 97 71-171 2-112 (112)
20 PLN02336 phosphoethanolamine N 99.4 3.3E-13 7.2E-18 127.3 7.9 97 69-170 265-369 (475)
21 PF07021 MetW: Methionine bios 99.4 3.4E-13 7.5E-18 115.6 6.6 92 71-169 14-108 (193)
22 PF08242 Methyltransf_12: Meth 99.4 5.6E-14 1.2E-18 105.0 1.6 90 75-166 1-99 (99)
23 TIGR02752 MenG_heptapren 2-hep 99.4 5.8E-13 1.3E-17 113.5 8.0 100 70-171 45-152 (231)
24 smart00138 MeTrc Methyltransfe 99.4 6.4E-13 1.4E-17 117.9 8.5 129 42-172 70-244 (264)
25 PRK11207 tellurite resistance 99.4 8.9E-13 1.9E-17 111.6 8.3 94 70-168 30-132 (197)
26 TIGR00740 methyltransferase, p 99.4 6.2E-13 1.3E-17 114.8 7.1 99 70-171 53-162 (239)
27 smart00828 PKS_MT Methyltransf 99.4 5.8E-13 1.2E-17 113.0 6.8 115 72-190 1-140 (224)
28 COG2227 UbiG 2-polyprenyl-3-me 99.4 6.3E-13 1.4E-17 117.3 7.1 98 70-172 59-163 (243)
29 TIGR02072 BioC biotin biosynth 99.4 8E-13 1.7E-17 111.2 7.3 98 70-171 34-136 (240)
30 PF13847 Methyltransf_31: Meth 99.4 1.4E-12 3.1E-17 105.0 8.0 100 70-172 3-112 (152)
31 PRK08317 hypothetical protein; 99.4 1.4E-12 3.1E-17 109.3 8.2 101 68-171 17-125 (241)
32 TIGR00477 tehB tellurite resis 99.4 1.3E-12 2.9E-17 110.4 7.9 115 71-192 31-167 (195)
33 PRK15451 tRNA cmo(5)U34 methyl 99.4 9.8E-13 2.1E-17 114.8 7.1 100 70-171 56-165 (247)
34 KOG1540 Ubiquinone biosynthesi 99.3 3.3E-12 7.2E-17 114.1 8.3 120 66-189 96-234 (296)
35 PF02353 CMAS: Mycolic acid cy 99.3 3.1E-12 6.7E-17 114.5 6.9 105 60-169 54-165 (273)
36 PRK11873 arsM arsenite S-adeno 99.3 5.2E-12 1.1E-16 110.8 7.7 98 70-171 77-184 (272)
37 PLN02490 MPBQ/MSBQ methyltrans 99.3 1.5E-11 3.4E-16 113.4 11.0 117 70-191 113-253 (340)
38 TIGR00537 hemK_rel_arch HemK-r 99.3 3.9E-11 8.4E-16 99.3 12.3 118 71-194 20-165 (179)
39 PRK11188 rrmJ 23S rRNA methylt 99.3 1.2E-11 2.6E-16 106.2 9.2 130 70-205 51-206 (209)
40 PRK11705 cyclopropane fatty ac 99.3 1.3E-11 2.8E-16 115.1 8.6 98 69-170 166-267 (383)
41 TIGR00138 gidB 16S rRNA methyl 99.3 1.7E-11 3.8E-16 103.2 8.5 126 50-186 25-158 (181)
42 PRK08287 cobalt-precorrin-6Y C 99.3 8.9E-11 1.9E-15 97.8 12.1 113 70-189 31-151 (187)
43 PRK12335 tellurite resistance 99.3 1.2E-11 2.6E-16 110.3 7.3 115 71-192 121-257 (287)
44 PLN02336 phosphoethanolamine N 99.3 1.2E-11 2.7E-16 116.7 7.7 99 69-170 36-142 (475)
45 TIGR02081 metW methionine bios 99.2 1.2E-11 2.7E-16 103.7 6.7 90 71-163 14-105 (194)
46 PRK00517 prmA ribosomal protei 99.2 7E-11 1.5E-15 103.5 11.3 129 70-205 119-249 (250)
47 PRK06202 hypothetical protein; 99.2 3.3E-11 7.1E-16 103.6 8.6 101 67-171 57-167 (232)
48 PF13649 Methyltransf_25: Meth 99.2 3.4E-12 7.3E-17 96.2 1.6 89 74-164 1-101 (101)
49 TIGR00406 prmA ribosomal prote 99.2 6.4E-11 1.4E-15 106.0 10.1 113 71-190 160-279 (288)
50 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 3.4E-11 7.5E-16 100.6 7.8 99 70-171 39-144 (223)
51 TIGR03587 Pse_Me-ase pseudamin 99.2 2.5E-11 5.5E-16 103.9 7.0 95 70-171 43-143 (204)
52 PF05401 NodS: Nodulation prot 99.2 1.1E-10 2.3E-15 100.7 10.5 149 50-204 23-193 (201)
53 TIGR00438 rrmJ cell division p 99.2 9.7E-11 2.1E-15 97.8 9.9 133 70-205 32-187 (188)
54 TIGR02716 C20_methyl_CrtF C-20 99.2 5E-11 1.1E-15 106.7 7.8 103 67-171 146-255 (306)
55 PRK06922 hypothetical protein; 99.2 3E-11 6.5E-16 119.4 6.8 100 70-171 418-538 (677)
56 KOG1270 Methyltransferases [Co 99.2 2.6E-11 5.5E-16 108.5 5.6 98 71-172 90-197 (282)
57 PRK00121 trmB tRNA (guanine-N( 99.2 6.1E-11 1.3E-15 100.9 7.5 119 70-190 40-177 (202)
58 PRK11088 rrmA 23S rRNA methylt 99.2 4.7E-11 1E-15 105.5 6.3 94 70-173 85-184 (272)
59 PRK00216 ubiE ubiquinone/menaq 99.1 1.6E-10 3.5E-15 97.5 8.5 99 70-171 51-159 (239)
60 TIGR01983 UbiG ubiquinone bios 99.1 1.1E-10 2.5E-15 98.6 7.4 98 70-171 45-150 (224)
61 PRK00377 cbiT cobalt-precorrin 99.1 7E-10 1.5E-14 93.6 10.7 145 42-192 12-168 (198)
62 PRK15001 SAM-dependent 23S rib 99.1 6.1E-10 1.3E-14 104.2 11.2 130 71-205 229-373 (378)
63 TIGR02021 BchM-ChlM magnesium 99.1 3.2E-10 6.9E-15 96.6 8.1 97 69-172 54-160 (219)
64 PRK14967 putative methyltransf 99.1 3.2E-09 6.9E-14 91.2 14.3 115 71-190 37-180 (223)
65 PRK05134 bifunctional 3-demeth 99.1 2.6E-10 5.6E-15 97.5 7.5 99 68-171 46-152 (233)
66 PRK09489 rsmC 16S ribosomal RN 99.1 1.1E-09 2.5E-14 100.8 11.8 129 72-206 198-337 (342)
67 PF03848 TehB: Tellurite resis 99.1 1.7E-10 3.6E-15 99.0 5.6 116 70-192 30-167 (192)
68 TIGR02469 CbiT precorrin-6Y C5 99.1 6E-10 1.3E-14 84.8 8.0 93 71-169 20-121 (124)
69 TIGR03534 RF_mod_PrmC protein- 99.1 9.8E-10 2.1E-14 94.1 10.0 117 71-190 88-237 (251)
70 TIGR00091 tRNA (guanine-N(7)-) 99.1 3.8E-10 8.2E-15 95.2 7.0 116 71-189 17-153 (194)
71 PRK14968 putative methyltransf 99.1 1.8E-09 4E-14 88.2 10.8 116 70-191 23-170 (188)
72 PRK07580 Mg-protoporphyrin IX 99.0 6.9E-10 1.5E-14 94.0 8.4 98 70-170 63-166 (230)
73 KOG4300 Predicted methyltransf 99.0 1.9E-10 4E-15 100.5 5.0 99 71-172 77-184 (252)
74 PRK04266 fibrillarin; Provisio 99.0 3.9E-09 8.4E-14 92.2 13.0 132 70-205 72-225 (226)
75 COG4976 Predicted methyltransf 99.0 5.2E-11 1.1E-15 105.3 1.2 122 66-191 121-262 (287)
76 COG2264 PrmA Ribosomal protein 99.0 2.5E-09 5.4E-14 97.4 11.7 119 70-194 162-288 (300)
77 PRK09328 N5-glutamine S-adenos 99.0 5.1E-09 1.1E-13 91.3 12.7 132 70-205 108-275 (275)
78 PF08003 Methyltransf_9: Prote 99.0 1.4E-09 3.1E-14 99.2 9.5 101 66-170 111-219 (315)
79 TIGR03840 TMPT_Se_Te thiopurin 99.0 1.1E-09 2.5E-14 94.6 8.2 96 70-169 34-151 (213)
80 TIGR00536 hemK_fam HemK family 99.0 4.2E-09 9.1E-14 94.0 11.8 130 72-205 116-282 (284)
81 PRK14121 tRNA (guanine-N(7)-)- 99.0 1.2E-09 2.7E-14 102.5 8.7 118 70-189 122-256 (390)
82 KOG3010 Methyltransferase [Gen 99.0 4.3E-10 9.4E-15 99.7 4.7 114 70-189 33-159 (261)
83 TIGR03533 L3_gln_methyl protei 99.0 4.4E-09 9.5E-14 94.3 11.1 121 71-196 122-276 (284)
84 COG2230 Cfa Cyclopropane fatty 99.0 1E-09 2.3E-14 99.1 6.9 98 66-170 68-176 (283)
85 PRK13255 thiopurine S-methyltr 99.0 1.4E-09 3.1E-14 94.2 6.7 116 71-191 38-187 (218)
86 PF05175 MTS: Methyltransferas 98.9 9.5E-09 2.1E-13 85.0 10.6 96 70-169 31-139 (170)
87 PRK13944 protein-L-isoaspartat 98.9 2.1E-09 4.4E-14 91.6 6.7 94 69-170 71-173 (205)
88 cd02440 AdoMet_MTases S-adenos 98.9 3.6E-09 7.8E-14 75.0 6.5 94 73-169 1-103 (107)
89 PF06325 PrmA: Ribosomal prote 98.9 6.1E-09 1.3E-13 94.6 9.4 127 71-206 162-295 (295)
90 PRK13942 protein-L-isoaspartat 98.9 3.1E-09 6.7E-14 91.2 7.0 92 69-170 75-176 (212)
91 TIGR03438 probable methyltrans 98.9 2.8E-09 6E-14 96.0 6.0 99 70-169 63-176 (301)
92 COG4106 Tam Trans-aconitate me 98.9 2.9E-09 6.4E-14 93.5 5.7 138 63-210 22-191 (257)
93 TIGR00080 pimt protein-L-isoas 98.8 5.9E-09 1.3E-13 89.0 6.8 93 69-169 76-176 (215)
94 PRK14966 unknown domain/N5-glu 98.8 3.1E-08 6.7E-13 94.0 12.0 135 71-206 252-419 (423)
95 PRK11805 N5-glutamine S-adenos 98.8 2.1E-08 4.6E-13 91.1 10.5 128 72-205 135-296 (307)
96 PF00891 Methyltransf_2: O-met 98.8 3.9E-09 8.5E-14 91.1 5.4 101 66-171 96-200 (241)
97 PTZ00146 fibrillarin; Provisio 98.8 3.1E-08 6.8E-13 90.0 11.4 97 70-169 132-236 (293)
98 PRK07402 precorrin-6B methylas 98.8 2.7E-08 5.8E-13 83.6 9.6 113 69-187 39-160 (196)
99 PLN03075 nicotianamine synthas 98.8 1.4E-08 2.9E-13 92.5 7.7 132 70-207 123-276 (296)
100 PRK01544 bifunctional N5-gluta 98.8 2.9E-08 6.3E-13 95.8 10.4 130 71-205 139-306 (506)
101 PLN02585 magnesium protoporphy 98.8 2.6E-08 5.6E-13 91.1 9.6 94 70-167 144-247 (315)
102 PLN02232 ubiquinone biosynthes 98.8 9.4E-09 2E-13 84.5 5.7 71 100-172 2-83 (160)
103 TIGR03704 PrmC_rel_meth putati 98.8 3.9E-08 8.4E-13 86.8 9.9 125 71-196 87-242 (251)
104 PF05148 Methyltransf_8: Hypot 98.7 6.7E-08 1.4E-12 84.4 9.7 122 70-207 72-199 (219)
105 PRK04457 spermidine synthase; 98.7 1.1E-07 2.3E-12 84.6 11.2 135 69-205 65-216 (262)
106 PRK00312 pcm protein-L-isoaspa 98.7 5.4E-08 1.2E-12 82.6 8.1 91 68-171 76-176 (212)
107 COG2890 HemK Methylase of poly 98.7 1.7E-07 3.7E-12 84.2 11.5 150 45-205 92-276 (280)
108 KOG1541 Predicted protein carb 98.7 5.5E-08 1.2E-12 85.9 7.4 124 61-188 41-178 (270)
109 PRK00811 spermidine synthase; 98.7 6E-08 1.3E-12 87.0 7.8 144 59-206 61-238 (283)
110 PF01728 FtsJ: FtsJ-like methy 98.7 9.3E-08 2E-12 79.1 8.2 137 66-205 19-180 (181)
111 PF13659 Methyltransf_26: Meth 98.7 1E-08 2.2E-13 78.0 2.3 97 72-170 2-115 (117)
112 PRK10901 16S rRNA methyltransf 98.7 9.5E-08 2E-12 90.1 9.0 116 67-184 241-390 (427)
113 TIGR00563 rsmB ribosomal RNA s 98.7 9.5E-08 2.1E-12 90.0 9.0 115 67-183 235-385 (426)
114 TIGR01177 conserved hypothetic 98.6 1.2E-07 2.6E-12 86.3 9.0 112 69-187 181-309 (329)
115 PRK14902 16S rRNA methyltransf 98.6 8.8E-08 1.9E-12 90.5 7.7 121 69-189 249-403 (444)
116 PRK14904 16S rRNA methyltransf 98.6 1E-07 2.2E-12 90.3 8.1 115 67-184 247-395 (445)
117 PRK11783 rlmL 23S rRNA m(2)G24 98.6 1E-07 2.2E-12 95.3 6.4 119 71-192 539-678 (702)
118 TIGR00417 speE spermidine synt 98.6 2.3E-07 4.9E-12 82.4 8.0 144 60-205 58-232 (270)
119 PRK14903 16S rRNA methyltransf 98.5 1.8E-07 3.9E-12 88.6 7.6 105 67-172 234-368 (431)
120 PRK14901 16S rRNA methyltransf 98.5 3.2E-07 6.9E-12 86.7 8.9 137 67-204 249-429 (434)
121 KOG1271 Methyltransferases [Ge 98.5 1.9E-07 4.1E-12 80.6 6.4 113 73-188 70-199 (227)
122 PLN02366 spermidine synthase 98.5 2.3E-07 5E-12 84.7 7.1 110 59-169 76-205 (308)
123 PF02390 Methyltransf_4: Putat 98.5 2E-07 4.3E-12 79.6 6.1 116 73-189 20-155 (195)
124 COG0500 SmtA SAM-dependent met 98.5 4.7E-07 1E-11 64.7 7.1 95 74-173 52-158 (257)
125 TIGR00446 nop2p NOL1/NOP2/sun 98.5 2.4E-07 5.2E-12 82.1 6.7 105 67-172 68-201 (264)
126 KOG3045 Predicted RNA methylas 98.5 1.1E-06 2.4E-11 79.3 10.6 109 70-195 180-292 (325)
127 COG2813 RsmC 16S RNA G1207 met 98.5 1.9E-06 4.2E-11 78.6 11.6 129 71-206 159-300 (300)
128 PRK01581 speE spermidine synth 98.4 9.5E-07 2.1E-11 82.8 9.5 148 59-208 135-316 (374)
129 KOG2361 Predicted methyltransf 98.4 4.9E-07 1.1E-11 80.5 7.1 110 62-171 63-184 (264)
130 PF05891 Methyltransf_PK: AdoM 98.4 5.4E-07 1.2E-11 78.9 6.2 123 69-192 54-199 (218)
131 COG4123 Predicted O-methyltran 98.4 2.9E-06 6.3E-11 75.6 10.0 121 69-190 43-190 (248)
132 PF05219 DREV: DREV methyltran 98.3 1E-06 2.2E-11 79.0 6.9 92 70-169 94-187 (265)
133 PRK03612 spermidine synthase; 98.3 3.1E-06 6.8E-11 82.0 9.7 121 69-190 296-440 (521)
134 PF01739 CheR: CheR methyltran 98.3 2E-06 4.3E-11 73.9 7.3 126 45-172 5-177 (196)
135 PRK13943 protein-L-isoaspartat 98.3 1.1E-06 2.5E-11 80.6 6.1 93 70-170 80-180 (322)
136 KOG1269 SAM-dependent methyltr 98.3 8.2E-07 1.8E-11 82.9 4.9 92 73-170 113-215 (364)
137 PHA03411 putative methyltransf 98.2 2.2E-06 4.7E-11 77.6 6.7 93 71-169 65-182 (279)
138 PF03291 Pox_MCEL: mRNA cappin 98.2 1.6E-06 3.5E-11 79.9 6.0 97 70-172 62-188 (331)
139 PLN02781 Probable caffeoyl-CoA 98.2 6.2E-06 1.3E-10 72.1 8.7 131 69-206 67-233 (234)
140 PRK15128 23S rRNA m(5)C1962 me 98.2 7.5E-06 1.6E-10 77.1 9.2 120 71-192 221-367 (396)
141 COG2519 GCD14 tRNA(1-methylade 98.1 9.3E-06 2E-10 72.6 8.5 112 68-188 92-214 (256)
142 PF01135 PCMT: Protein-L-isoas 98.1 1.5E-06 3.2E-11 75.3 3.4 95 64-170 68-172 (209)
143 COG2242 CobL Precorrin-6B meth 98.1 4.6E-05 1E-09 65.4 11.8 118 66-190 30-157 (187)
144 smart00650 rADc Ribosomal RNA 98.1 9.1E-06 2E-10 66.8 7.3 96 68-170 11-113 (169)
145 PRK13256 thiopurine S-methyltr 98.1 8.9E-06 1.9E-10 71.5 6.8 118 70-192 43-195 (226)
146 KOG2940 Predicted methyltransf 98.0 2.7E-06 5.8E-11 76.0 3.1 95 70-169 72-173 (325)
147 PRK10611 chemotaxis methyltran 98.0 8.8E-06 1.9E-10 73.8 6.5 100 71-172 116-264 (287)
148 COG0220 Predicted S-adenosylme 98.0 5.3E-06 1.1E-10 72.9 4.8 107 72-181 50-177 (227)
149 PRK01544 bifunctional N5-gluta 98.0 1.3E-05 2.8E-10 77.6 7.2 120 69-189 346-483 (506)
150 PRK13168 rumA 23S rRNA m(5)U19 98.0 8.4E-05 1.8E-09 70.4 12.4 113 69-190 296-420 (443)
151 TIGR00478 tly hemolysin TlyA f 98.0 4.4E-05 9.5E-10 67.1 9.3 109 69-190 74-213 (228)
152 TIGR00479 rumA 23S rRNA (uraci 97.9 7.7E-05 1.7E-09 70.2 10.3 115 69-190 291-416 (431)
153 PF10294 Methyltransf_16: Puta 97.9 1.9E-05 4.2E-10 65.8 5.2 100 68-170 43-156 (173)
154 PHA03412 putative methyltransf 97.8 4.1E-05 8.9E-10 68.1 6.9 92 71-166 50-159 (241)
155 COG1352 CheR Methylase of chem 97.8 8.8E-05 1.9E-09 66.8 8.7 130 44-174 70-245 (268)
156 PF06080 DUF938: Protein of un 97.8 5.6E-05 1.2E-09 65.7 7.1 131 73-205 28-204 (204)
157 PLN02672 methionine S-methyltr 97.8 9.4E-05 2E-09 77.5 9.3 119 71-190 119-299 (1082)
158 KOG2904 Predicted methyltransf 97.8 0.00028 6E-09 64.4 10.9 154 47-205 128-327 (328)
159 PRK00536 speE spermidine synth 97.7 0.00012 2.6E-09 65.8 7.9 106 59-174 57-175 (262)
160 KOG3178 Hydroxyindole-O-methyl 97.7 0.00015 3.3E-09 67.4 8.1 99 70-171 177-276 (342)
161 KOG1975 mRNA cap methyltransfe 97.7 9.5E-05 2.1E-09 68.7 6.4 110 69-181 116-250 (389)
162 COG2518 Pcm Protein-L-isoaspar 97.6 0.00018 4E-09 62.8 7.4 92 67-171 69-170 (209)
163 PRK04148 hypothetical protein; 97.6 0.00015 3.3E-09 59.2 6.4 82 68-158 14-99 (134)
164 PLN02476 O-methyltransferase 97.6 0.00022 4.8E-09 64.5 8.0 132 68-206 116-278 (278)
165 COG2521 Predicted archaeal met 97.6 0.00056 1.2E-08 61.3 10.3 134 68-206 132-287 (287)
166 PLN02823 spermine synthase 97.6 0.00062 1.3E-08 63.1 10.8 144 59-206 88-268 (336)
167 PF08704 GCD14: tRNA methyltra 97.6 5.4E-05 1.2E-09 67.4 3.3 117 67-189 37-166 (247)
168 PF02527 GidB: rRNA small subu 97.6 0.00057 1.2E-08 58.2 9.2 133 47-190 26-171 (184)
169 PRK11760 putative 23S rRNA C24 97.5 0.0014 3.1E-08 61.3 12.5 90 69-169 210-304 (357)
170 PRK10909 rsmD 16S rRNA m(2)G96 97.5 0.0002 4.2E-09 61.6 6.3 120 44-172 32-161 (199)
171 PRK03522 rumB 23S rRNA methylu 97.5 0.00067 1.4E-08 61.5 10.1 125 70-205 173-314 (315)
172 PF05724 TPMT: Thiopurine S-me 97.5 0.00011 2.4E-09 63.9 4.9 119 69-191 36-187 (218)
173 KOG2899 Predicted methyltransf 97.5 0.00031 6.8E-09 63.1 7.1 100 68-170 56-209 (288)
174 COG0293 FtsJ 23S rRNA methylas 97.4 0.00035 7.6E-09 60.8 6.7 130 71-205 46-200 (205)
175 PF11968 DUF3321: Putative met 97.4 0.0007 1.5E-08 59.5 8.5 123 72-205 53-192 (219)
176 PRK11933 yebU rRNA (cytosine-C 97.4 0.00071 1.5E-08 65.3 8.9 104 67-172 110-244 (470)
177 PF05185 PRMT5: PRMT5 arginine 97.4 0.00026 5.5E-09 67.9 5.2 146 19-169 133-296 (448)
178 PF01596 Methyltransf_3: O-met 97.3 0.00033 7.2E-09 60.5 5.4 129 69-206 44-205 (205)
179 COG4627 Uncharacterized protei 97.3 8.9E-05 1.9E-09 62.6 1.3 44 126-169 40-85 (185)
180 KOG1499 Protein arginine N-met 97.3 0.00041 8.8E-09 64.6 5.6 98 69-169 59-166 (346)
181 KOG1331 Predicted methyltransf 97.3 0.00017 3.7E-09 65.6 2.9 92 71-169 46-142 (293)
182 PRK00274 ksgA 16S ribosomal RN 97.2 0.00035 7.6E-09 62.2 4.4 66 69-139 41-112 (272)
183 COG1189 Predicted rRNA methyla 97.2 0.0053 1.1E-07 54.8 11.7 117 69-191 78-221 (245)
184 COG0421 SpeE Spermidine syntha 97.2 0.0012 2.5E-08 60.0 7.2 141 59-204 61-235 (282)
185 TIGR02085 meth_trns_rumB 23S r 97.1 0.0041 9E-08 57.9 10.4 110 70-190 233-352 (374)
186 COG1092 Predicted SAM-dependen 97.1 0.001 2.2E-08 63.0 6.2 123 46-173 196-339 (393)
187 PRK14896 ksgA 16S ribosomal RN 97.0 0.00093 2E-08 58.9 5.0 67 70-143 29-102 (258)
188 PF12147 Methyltransf_20: Puta 97.0 0.0029 6.2E-08 58.1 8.0 124 68-191 133-276 (311)
189 TIGR00755 ksgA dimethyladenosi 97.0 0.0043 9.4E-08 54.3 8.7 43 68-113 27-70 (253)
190 COG4122 Predicted O-methyltran 96.8 0.0034 7.4E-08 55.1 6.8 131 69-206 58-218 (219)
191 PRK11727 23S rRNA mA1618 methy 96.7 0.005 1.1E-07 56.8 7.3 121 68-192 112-267 (321)
192 PF09243 Rsm22: Mitochondrial 96.7 0.016 3.4E-07 52.0 9.9 123 67-192 30-166 (274)
193 PTZ00338 dimethyladenosine tra 96.6 0.0028 6E-08 57.6 4.6 67 70-142 36-111 (294)
194 PF01564 Spermine_synth: Sperm 96.6 0.012 2.7E-07 51.9 8.5 137 68-207 74-239 (246)
195 TIGR00095 RNA methyltransferas 96.6 0.0053 1.1E-07 52.1 5.8 99 71-172 50-161 (189)
196 PF07942 N2227: N2227-like pro 96.5 0.0084 1.8E-07 54.2 7.1 60 131-191 164-239 (270)
197 COG1041 Predicted DNA modifica 96.5 0.011 2.5E-07 55.2 8.1 114 70-190 197-326 (347)
198 COG2263 Predicted RNA methylas 96.4 0.0035 7.6E-08 54.3 4.1 114 69-189 44-163 (198)
199 KOG1661 Protein-L-isoaspartate 96.4 0.0025 5.5E-08 56.2 2.8 92 70-171 82-194 (237)
200 COG0357 GidB Predicted S-adeno 96.4 0.082 1.8E-06 46.4 12.2 136 47-193 45-194 (215)
201 COG3963 Phospholipid N-methylt 96.3 0.0068 1.5E-07 52.0 5.2 104 66-170 44-156 (194)
202 KOG1709 Guanidinoacetate methy 96.3 0.0092 2E-07 53.1 6.0 100 69-170 100-206 (271)
203 PRK04338 N(2),N(2)-dimethylgua 96.3 0.0051 1.1E-07 57.9 4.4 91 71-169 58-157 (382)
204 TIGR03439 methyl_EasF probable 96.3 0.016 3.4E-07 53.5 7.6 98 71-169 77-196 (319)
205 PRK13699 putative methylase; P 96.1 0.012 2.7E-07 51.4 5.9 58 149-206 51-121 (227)
206 KOG3115 Methyltransferase-like 96.1 0.0096 2.1E-07 52.5 4.9 96 73-172 63-185 (249)
207 PLN02589 caffeoyl-CoA O-methyl 96.0 0.012 2.7E-07 52.3 5.3 132 68-206 77-246 (247)
208 KOG1500 Protein arginine N-met 95.9 0.016 3.5E-07 54.7 5.9 116 68-190 175-309 (517)
209 PF01170 UPF0020: Putative RNA 95.9 0.056 1.2E-06 45.4 8.6 119 68-191 26-168 (179)
210 PRK00050 16S rRNA m(4)C1402 me 95.9 0.0056 1.2E-07 56.0 2.6 70 69-139 18-97 (296)
211 PF10672 Methyltrans_SAM: S-ad 95.7 0.0043 9.4E-08 56.4 1.2 102 70-173 123-241 (286)
212 PF02475 Met_10: Met-10+ like- 95.5 0.0074 1.6E-07 52.1 1.9 88 70-167 101-199 (200)
213 PF01269 Fibrillarin: Fibrilla 95.3 0.13 2.8E-06 45.7 9.0 98 68-169 71-177 (229)
214 COG4798 Predicted methyltransf 95.2 0.063 1.4E-06 47.2 6.7 103 66-172 46-168 (238)
215 TIGR00308 TRM1 tRNA(guanine-26 95.2 0.027 5.9E-07 53.0 4.8 90 72-169 46-146 (374)
216 KOG3987 Uncharacterized conser 95.2 0.0053 1.1E-07 54.5 -0.1 90 71-169 113-206 (288)
217 KOG3191 Predicted N6-DNA-methy 95.1 0.26 5.7E-06 42.9 10.0 122 70-193 43-192 (209)
218 KOG2793 Putative N2,N2-dimethy 95.0 0.2 4.3E-06 44.9 9.4 133 70-207 86-242 (248)
219 PF13578 Methyltransf_24: Meth 95.0 0.0055 1.2E-07 46.1 -0.5 94 75-170 1-105 (106)
220 TIGR02987 met_A_Alw26 type II 95.0 0.075 1.6E-06 51.4 7.2 44 70-113 31-82 (524)
221 PF03602 Cons_hypoth95: Conser 94.4 0.031 6.7E-07 47.4 2.6 99 69-172 41-155 (183)
222 KOG1663 O-methyltransferase [S 94.3 0.063 1.4E-06 47.8 4.6 98 66-170 69-183 (237)
223 PRK11524 putative methyltransf 94.0 0.14 3.1E-06 45.8 6.2 33 149-181 59-91 (284)
224 KOG3201 Uncharacterized conser 93.9 0.035 7.6E-07 47.6 2.0 124 66-191 25-163 (201)
225 PF03269 DUF268: Caenorhabditi 93.9 0.041 8.8E-07 46.9 2.3 44 128-171 59-112 (177)
226 PF06859 Bin3: Bicoid-interact 92.8 0.061 1.3E-06 42.7 1.7 58 132-189 1-71 (110)
227 COG3897 Predicted methyltransf 92.8 0.32 6.9E-06 42.7 6.2 100 66-172 75-181 (218)
228 TIGR02143 trmA_only tRNA (urac 92.4 0.093 2E-06 48.7 2.5 107 73-190 200-330 (353)
229 KOG2352 Predicted spermine/spe 92.3 0.37 8E-06 47.0 6.6 96 72-171 50-162 (482)
230 KOG1122 tRNA and rRNA cytosine 92.2 0.43 9.3E-06 46.1 6.8 102 66-175 237-376 (460)
231 PF02384 N6_Mtase: N-6 DNA Met 92.0 0.11 2.5E-06 46.3 2.6 108 67-174 43-187 (311)
232 PRK05031 tRNA (uracil-5-)-meth 91.9 0.12 2.7E-06 48.0 2.9 108 72-190 208-339 (362)
233 COG0144 Sun tRNA and rRNA cyto 91.9 0.92 2E-05 42.3 8.5 106 66-172 152-290 (355)
234 COG5459 Predicted rRNA methyla 91.7 0.17 3.8E-06 48.1 3.5 103 67-171 110-226 (484)
235 COG0742 N6-adenine-specific me 91.5 0.56 1.2E-05 40.5 6.2 118 54-173 27-157 (187)
236 COG1889 NOP1 Fibrillarin-like 91.5 2.7 5.8E-05 37.3 10.4 119 46-169 48-179 (231)
237 PF01555 N6_N4_Mtase: DNA meth 91.5 0.19 4.2E-06 41.5 3.2 27 145-171 31-57 (231)
238 TIGR01444 fkbM_fam methyltrans 91.4 0.13 2.8E-06 40.2 2.1 35 73-108 1-36 (143)
239 PF13679 Methyltransf_32: Meth 91.3 0.23 5.1E-06 39.7 3.5 43 69-113 24-72 (141)
240 cd08283 FDH_like_1 Glutathione 91.3 0.41 8.8E-06 44.0 5.5 99 70-170 184-306 (386)
241 KOG2798 Putative trehalase [Ca 90.9 0.52 1.1E-05 44.1 5.7 59 132-191 259-334 (369)
242 KOG4589 Cell division protein 90.7 1.2 2.7E-05 39.1 7.5 131 70-205 69-225 (232)
243 PF01234 NNMT_PNMT_TEMT: NNMT/ 90.3 0.18 3.9E-06 45.3 2.2 63 130-192 156-237 (256)
244 PRK11783 rlmL 23S rRNA m(2)G24 88.4 1.5 3.3E-05 44.4 7.3 77 97-173 258-350 (702)
245 cd08254 hydroxyacyl_CoA_DH 6-h 88.0 1.7 3.6E-05 38.0 6.6 90 70-169 165-262 (338)
246 KOG2915 tRNA(1-methyladenosine 87.8 2 4.3E-05 39.6 7.0 115 67-189 102-230 (314)
247 COG2265 TrmA SAM-dependent met 87.8 1.3 2.9E-05 42.5 6.2 122 59-187 281-413 (432)
248 PF01189 Nol1_Nop2_Fmu: NOL1/N 87.7 0.14 3E-06 46.1 -0.5 120 66-185 81-238 (283)
249 PF09445 Methyltransf_15: RNA 85.5 0.6 1.3E-05 39.3 2.3 109 72-185 1-135 (163)
250 KOG1099 SAM-dependent methyltr 84.6 0.92 2E-05 41.0 3.1 133 70-205 41-204 (294)
251 PRK10742 putative methyltransf 84.3 1.1 2.3E-05 40.4 3.4 89 65-157 83-188 (250)
252 PF04816 DUF633: Family of unk 83.9 6.6 0.00014 34.0 8.1 132 74-210 1-144 (205)
253 COG0030 KsgA Dimethyladenosine 83.7 1.5 3.2E-05 39.7 4.1 83 45-139 12-102 (259)
254 PF05958 tRNA_U5-meth_tr: tRNA 83.7 1.2 2.6E-05 41.4 3.6 49 59-111 185-235 (352)
255 KOG3420 Predicted RNA methylas 82.9 1 2.2E-05 38.2 2.5 74 66-143 44-125 (185)
256 KOG2539 Mitochondrial/chloropl 82.3 2.8 6E-05 41.0 5.6 101 70-171 200-316 (491)
257 KOG0820 Ribosomal RNA adenine 82.1 2.3 5E-05 39.2 4.7 63 71-139 59-130 (315)
258 PF04445 SAM_MT: Putative SAM- 81.5 0.52 1.1E-05 42.0 0.3 77 65-145 70-164 (234)
259 PRK15001 SAM-dependent 23S rib 79.4 5.5 0.00012 37.7 6.4 101 73-182 47-159 (378)
260 PF05430 Methyltransf_30: S-ad 79.2 3.4 7.4E-05 33.1 4.3 54 150-206 70-124 (124)
261 PF01795 Methyltransf_5: MraW 78.9 2.5 5.4E-05 39.1 3.9 83 66-167 16-99 (310)
262 cd00315 Cyt_C5_DNA_methylase C 78.4 5.6 0.00012 35.5 5.9 112 73-190 2-139 (275)
263 PF00398 RrnaAD: Ribosomal RNA 78.1 1.4 3E-05 38.9 1.9 59 45-113 12-71 (262)
264 COG2520 Predicted methyltransf 77.6 8.1 0.00017 36.3 6.9 111 71-189 189-315 (341)
265 PF14740 DUF4471: Domain of un 77.3 3.7 8E-05 37.7 4.5 56 129-190 219-285 (289)
266 PF11899 DUF3419: Protein of u 76.7 2.8 6E-05 39.7 3.6 43 129-171 291-335 (380)
267 PF14314 Methyltrans_Mon: Viru 76.6 20 0.00043 36.7 9.8 160 47-210 299-505 (675)
268 KOG1562 Spermidine synthase [A 76.1 3.7 8.1E-05 38.3 4.1 148 57-205 104-282 (337)
269 PF08123 DOT1: Histone methyla 73.4 2.3 5E-05 36.8 2.0 34 132-168 122-156 (205)
270 TIGR00006 S-adenosyl-methyltra 73.2 5.1 0.00011 36.9 4.3 44 69-113 19-63 (305)
271 TIGR00675 dcm DNA-methyltransf 72.9 48 0.001 30.2 10.6 127 74-205 1-160 (315)
272 COG0863 DNA modification methy 69.9 12 0.00027 32.5 5.9 42 149-190 78-119 (302)
273 PHA01634 hypothetical protein 68.0 9.5 0.00021 31.8 4.3 59 47-112 10-69 (156)
274 COG1064 AdhP Zn-dependent alco 67.8 8.5 0.00018 36.1 4.6 92 70-172 166-261 (339)
275 COG0116 Predicted N6-adenine-s 67.8 28 0.00062 33.2 8.1 112 67-179 188-353 (381)
276 cd08234 threonine_DH_like L-th 66.9 20 0.00043 31.4 6.6 91 70-169 159-256 (334)
277 COG4076 Predicted RNA methylas 66.7 7.3 0.00016 34.5 3.6 91 72-169 34-134 (252)
278 KOG2198 tRNA cytosine-5-methyl 64.6 39 0.00085 32.3 8.3 105 66-171 151-297 (375)
279 PRK09424 pntA NAD(P) transhydr 63.3 22 0.00049 35.0 6.7 98 69-170 163-285 (509)
280 cd08230 glucose_DH Glucose deh 63.0 34 0.00074 30.7 7.5 91 70-169 172-268 (355)
281 cd08245 CAD Cinnamyl alcohol d 62.6 34 0.00075 29.9 7.3 91 70-169 162-255 (330)
282 PF07757 AdoMet_MTase: Predict 62.2 8 0.00017 30.9 2.8 31 70-103 58-88 (112)
283 PF03059 NAS: Nicotianamine sy 61.6 10 0.00022 34.5 3.8 134 71-206 121-272 (276)
284 TIGR00027 mthyl_TIGR00027 meth 60.6 11 0.00024 33.5 3.8 102 66-170 78-197 (260)
285 COG2933 Predicted SAM-dependen 59.6 14 0.0003 34.3 4.3 83 71-163 212-296 (358)
286 cd08261 Zn_ADH7 Alcohol dehydr 59.1 33 0.00072 30.2 6.6 91 70-169 159-257 (337)
287 KOG1596 Fibrillarin and relate 57.8 20 0.00044 32.8 4.9 118 47-169 129-260 (317)
288 KOG2187 tRNA uracil-5-methyltr 57.5 9.8 0.00021 37.7 3.1 50 39-91 354-404 (534)
289 cd05188 MDR Medium chain reduc 57.4 39 0.00084 28.0 6.4 93 69-171 133-233 (271)
290 COG0287 TyrA Prephenate dehydr 57.0 46 0.00099 30.2 7.2 110 72-190 4-119 (279)
291 PF07091 FmrO: Ribosomal RNA m 56.8 11 0.00023 34.1 3.0 125 59-190 95-240 (251)
292 cd08232 idonate-5-DH L-idonate 56.0 43 0.00093 29.4 6.8 91 70-169 165-261 (339)
293 COG0275 Predicted S-adenosylme 55.5 21 0.00045 33.3 4.7 46 68-113 21-67 (314)
294 PF06962 rRNA_methylase: Putat 54.6 27 0.0006 28.7 4.9 86 118-205 30-140 (140)
295 PF01206 TusA: Sulfurtransfera 53.9 71 0.0015 22.0 7.8 57 149-205 13-70 (70)
296 COG4262 Predicted spermidine s 53.8 23 0.00049 34.4 4.8 156 51-209 266-455 (508)
297 PRK06274 indolepyruvate oxidor 53.6 25 0.00055 29.4 4.7 37 126-171 59-97 (197)
298 PF01861 DUF43: Protein of unk 53.3 1.1E+02 0.0024 27.5 8.8 118 70-190 44-174 (243)
299 PF04672 Methyltransf_19: S-ad 51.3 40 0.00087 30.7 5.8 49 136-184 154-209 (267)
300 PF00107 ADH_zinc_N: Zinc-bind 49.7 11 0.00023 28.6 1.7 83 80-172 1-91 (130)
301 cd08295 double_bond_reductase_ 48.7 34 0.00073 30.4 4.9 90 70-169 151-250 (338)
302 PLN02668 indole-3-acetate carb 48.6 10 0.00022 36.2 1.6 15 129-143 158-173 (386)
303 TIGR03201 dearomat_had 6-hydro 48.0 41 0.00089 30.2 5.4 91 70-170 166-272 (349)
304 PF03514 GRAS: GRAS domain fam 47.8 59 0.0013 30.5 6.6 104 66-169 106-243 (374)
305 PF02636 Methyltransf_28: Puta 47.3 14 0.00031 32.2 2.3 21 71-91 19-39 (252)
306 COG1063 Tdh Threonine dehydrog 46.5 50 0.0011 30.3 5.8 87 73-169 171-268 (350)
307 cd08294 leukotriene_B4_DH_like 45.8 39 0.00085 29.4 4.8 89 70-169 143-240 (329)
308 TIGR02825 B4_12hDH leukotriene 45.2 43 0.00093 29.5 5.0 90 70-169 138-236 (325)
309 PF02153 PDH: Prephenate dehyd 44.2 49 0.0011 29.1 5.2 99 84-191 1-103 (258)
310 cd08267 MDR1 Medium chain dehy 43.3 1.7E+02 0.0036 24.9 8.3 92 70-170 143-240 (319)
311 COG3414 SgaB Phosphotransferas 43.0 69 0.0015 24.5 5.2 53 108-172 24-77 (93)
312 PLN03154 putative allyl alcoho 42.7 47 0.001 30.1 4.9 89 70-169 158-257 (348)
313 cd08236 sugar_DH NAD(P)-depend 42.1 51 0.0011 29.0 5.0 92 70-170 159-258 (343)
314 KOG0821 Predicted ribosomal RN 41.7 23 0.0005 32.2 2.7 41 72-112 52-94 (326)
315 cd08293 PTGR2 Prostaglandin re 41.3 87 0.0019 27.6 6.4 92 66-168 150-252 (345)
316 cd05278 FDH_like Formaldehyde 39.1 94 0.002 27.3 6.2 90 71-169 168-266 (347)
317 cd08255 2-desacetyl-2-hydroxye 38.4 1.4E+02 0.0031 25.2 7.0 89 70-169 97-189 (277)
318 PRK09880 L-idonate 5-dehydroge 37.7 82 0.0018 28.1 5.7 92 70-170 169-266 (343)
319 TIGR02822 adh_fam_2 zinc-bindi 37.4 2E+02 0.0044 25.6 8.2 87 70-170 165-254 (329)
320 PRK00299 sulfur transfer prote 37.1 1.6E+02 0.0035 21.4 8.1 59 148-206 21-80 (81)
321 TIGR02175 PorC_KorC 2-oxoacid: 37.0 1.1E+02 0.0024 25.2 6.0 34 129-171 62-98 (177)
322 KOG2920 Predicted methyltransf 36.7 18 0.00039 33.2 1.2 19 70-88 116-134 (282)
323 COG0031 CysK Cysteine synthase 36.6 3.3E+02 0.0072 25.2 9.5 106 72-187 170-282 (300)
324 cd08274 MDR9 Medium chain dehy 36.3 2.5E+02 0.0053 24.6 8.4 87 70-168 177-271 (350)
325 cd08241 QOR1 Quinone oxidoredu 35.8 1.2E+02 0.0027 25.5 6.2 90 70-169 139-237 (323)
326 COG3315 O-Methyltransferase in 34.5 34 0.00074 31.2 2.7 101 66-169 89-208 (297)
327 cd05281 TDH Threonine dehydrog 34.4 2.1E+02 0.0045 25.3 7.7 91 70-170 163-262 (341)
328 PF02522 Antibiotic_NAT: Amino 34.0 50 0.0011 28.7 3.6 35 135-169 1-36 (229)
329 cd08279 Zn_ADH_class_III Class 33.9 1.3E+02 0.0028 27.0 6.4 91 71-170 183-282 (363)
330 PRK07502 cyclohexadienyl dehyd 33.7 1.3E+02 0.0028 26.9 6.2 91 71-169 6-99 (307)
331 cd05285 sorbitol_DH Sorbitol d 33.7 1.5E+02 0.0032 26.3 6.6 90 71-169 163-264 (343)
332 COG4301 Uncharacterized conser 32.7 1.2E+02 0.0027 28.0 5.8 99 71-170 79-193 (321)
333 PRK07417 arogenate dehydrogena 32.2 1.9E+02 0.0041 25.5 7.0 79 74-164 3-85 (279)
334 cd08292 ETR_like_2 2-enoyl thi 31.6 1.1E+02 0.0025 26.3 5.5 90 70-169 139-237 (324)
335 KOG2651 rRNA adenine N-6-methy 31.1 51 0.0011 32.1 3.3 34 69-105 152-186 (476)
336 COG0373 HemA Glutamyl-tRNA red 30.6 1E+02 0.0023 29.7 5.4 87 69-158 176-267 (414)
337 PLN02256 arogenate dehydrogena 30.1 1.6E+02 0.0034 26.9 6.2 104 66-182 31-141 (304)
338 PF10354 DUF2431: Domain of un 29.9 2.9E+02 0.0063 22.9 7.4 110 77-189 3-147 (166)
339 TIGR00006 S-adenosyl-methyltra 29.4 69 0.0015 29.6 3.8 37 148-184 218-255 (305)
340 PLN02668 indole-3-acetate carb 29.1 76 0.0016 30.3 4.1 22 148-169 215-236 (386)
341 PRK09489 rsmC 16S ribosomal RN 29.0 1.9E+02 0.0041 26.8 6.7 105 70-185 19-128 (342)
342 PRK08507 prephenate dehydrogen 28.5 1.7E+02 0.0037 25.6 6.1 82 74-167 3-88 (275)
343 PRK03659 glutathione-regulated 28.5 48 0.001 33.0 2.8 86 79-172 406-500 (601)
344 PF01558 POR: Pyruvate ferredo 27.6 98 0.0021 25.1 4.1 35 129-172 53-88 (173)
345 cd03422 YedF YedF is a bacteri 27.5 2.2E+02 0.0048 19.9 7.9 56 149-204 12-68 (69)
346 TIGR00692 tdh L-threonine 3-de 27.2 1.5E+02 0.0033 26.1 5.6 92 70-170 161-261 (340)
347 PLN02353 probable UDP-glucose 27.0 88 0.0019 30.5 4.3 36 148-183 105-142 (473)
348 COG0604 Qor NADPH:quinone redu 26.6 68 0.0015 29.3 3.3 91 71-171 143-242 (326)
349 PF02254 TrkA_N: TrkA-N domain 26.5 1.1E+02 0.0025 22.5 4.0 91 79-173 4-99 (116)
350 cd08290 ETR 2-enoyl thioester 26.4 1.5E+02 0.0032 26.0 5.3 92 70-169 146-250 (341)
351 PF05206 TRM13: Methyltransfer 26.1 63 0.0014 29.0 2.9 22 70-91 18-39 (259)
352 TIGR00561 pntA NAD(P) transhyd 26.1 72 0.0016 31.6 3.5 94 70-167 163-281 (511)
353 COG4121 Uncharacterized conser 25.8 87 0.0019 28.3 3.7 68 118-190 151-225 (252)
354 cd08289 MDR_yhfp_like Yhfp put 25.5 2.2E+02 0.0048 24.5 6.2 90 71-170 147-243 (326)
355 PF04989 CmcI: Cephalosporin h 25.3 99 0.0021 27.1 3.9 29 144-172 121-149 (206)
356 cd08243 quinone_oxidoreductase 25.3 1.7E+02 0.0037 24.8 5.4 90 70-169 142-237 (320)
357 PF10237 N6-adenineMlase: Prob 25.2 1.5E+02 0.0032 24.8 4.8 51 130-182 84-135 (162)
358 cd01842 SGNH_hydrolase_like_5 25.2 84 0.0018 27.2 3.3 45 131-175 49-104 (183)
359 PF01795 Methyltransf_5: MraW 25.1 1E+02 0.0022 28.6 4.1 41 148-188 219-260 (310)
360 PRK10669 putative cation:proto 24.5 69 0.0015 31.3 3.1 86 79-173 423-518 (558)
361 COG1565 Uncharacterized conser 24.2 90 0.002 29.8 3.6 45 47-91 53-98 (370)
362 cd08263 Zn_ADH10 Alcohol dehyd 24.0 2E+02 0.0043 25.8 5.8 91 70-169 187-286 (367)
363 TIGR01743 purR_Bsub pur operon 23.8 81 0.0018 28.6 3.1 23 148-171 84-106 (268)
364 KOG1298 Squalene monooxygenase 23.6 2E+02 0.0043 28.4 5.8 73 71-144 45-146 (509)
365 TIGR03710 OAFO_sf 2-oxoacid:ac 23.4 2.7E+02 0.0059 27.6 7.0 32 131-171 63-94 (562)
366 PRK05844 pyruvate flavodoxin o 23.3 2.3E+02 0.0049 23.6 5.6 32 131-170 65-97 (186)
367 PRK00050 16S rRNA m(4)C1402 me 22.9 1.1E+02 0.0023 28.1 3.8 37 148-184 214-251 (296)
368 PRK06853 indolepyruvate oxidor 22.0 1.6E+02 0.0035 24.6 4.5 32 131-171 67-98 (197)
369 cd00291 SirA_YedF_YeeD SirA, Y 21.9 2.6E+02 0.0057 18.8 7.7 46 151-197 15-61 (69)
370 cd05289 MDR_like_2 alcohol deh 21.5 4.8E+02 0.01 21.7 8.6 89 70-169 144-237 (309)
371 PF03492 Methyltransf_7: SAM d 21.4 67 0.0014 29.7 2.2 21 68-88 14-34 (334)
372 PF02558 ApbA: Ketopantoate re 20.9 2.1E+02 0.0045 22.2 4.7 100 76-182 3-114 (151)
373 PRK05396 tdh L-threonine 3-deh 20.8 5.8E+02 0.012 22.4 8.1 91 70-170 163-263 (341)
374 TIGR00497 hsdM type I restrict 20.7 6E+02 0.013 24.6 8.6 97 70-166 217-351 (501)
375 PRK12921 2-dehydropantoate 2-r 20.3 5.2E+02 0.011 22.4 7.6 102 73-181 2-114 (305)
376 COG1608 Predicted archaeal kin 20.2 1.4E+02 0.003 27.2 3.8 75 84-171 86-171 (252)
377 cd05286 QOR2 Quinone oxidoredu 20.2 1.9E+02 0.0041 24.2 4.6 89 71-169 137-234 (320)
378 PRK08300 acetaldehyde dehydrog 20.1 2.2E+02 0.0049 26.2 5.3 93 73-173 6-103 (302)
379 TIGR02817 adh_fam_1 zinc-bindi 20.1 3.3E+02 0.0072 23.6 6.3 90 71-169 149-246 (336)
380 KOG1335 Dihydrolipoamide dehyd 20.0 72 0.0016 31.2 2.1 20 71-90 39-58 (506)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=3.3e-63 Score=468.83 Aligned_cols=202 Identities=50% Similarity=0.935 Sum_probs=190.9
Q ss_pred CccCCCCCCCCCCCCCCCCCccCCCCCcccccccCccCCCCcccchhhhhhhHHHHHhhhhhccc--CCCCCCCeEEeec
Q 027609 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMG--INWSFVRNVMDMR 78 (221)
Q Consensus 1 ~~~~p~~~~~~~~~~p~~WP~rl~~~p~rl~~~~~~~~~~~~~~f~~d~~~W~~~v~~~Y~~~L~--i~~~~~r~VLD~G 78 (221)
||++|++++..+.+++++||+||+++|+||++.. +.+.+.|.|.+|+++|+++|++ |+.+++ |+++++||||||+
T Consensus 297 it~~p~~~~~~~~~~~~~WP~RL~~~P~rl~~~~--~~g~~~e~F~~Dt~~Wk~~V~~-Y~~l~~~~i~~~~iRNVMDMn 373 (506)
T PF03141_consen 297 ITPLPEVSSEIAGGWLPKWPERLNAVPPRLSSGS--IPGISPEEFKEDTKHWKKRVSH-YKKLLGLAIKWGRIRNVMDMN 373 (506)
T ss_pred cCcCCcccccccccCCCCChhhhccCchhhhcCC--cCCCCHHHHHHHHHHHHHHHHH-HHHhhcccccccceeeeeeec
Confidence 6899999888899999999999999999999711 2346899999999999999998 887776 8999999999999
Q ss_pred CcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccceeccccccCCCCCCccCeeeeccccccccc--cHHHHHHHh
Q 027609 79 AVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK--SLKAVVAEV 156 (221)
Q Consensus 79 cG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~--d~~~vL~Em 156 (221)
+|+|||||+|.+++||||||+|+..+++|++|++|||||+||||||+|+||||||||||++.+|+++.+ +.+++|+||
T Consensus 374 Ag~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEm 453 (506)
T PF03141_consen 374 AGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEM 453 (506)
T ss_pred ccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 999999999
Q ss_pred hhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEeecCC----CeeEEEEEe
Q 027609 157 DRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTND----NQGMLCVHK 205 (221)
Q Consensus 157 dRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~~~~~----~e~~l~~~K 205 (221)
||||||||++||||..+++++|++++++|+|++.+.++++ +||||+|||
T Consensus 454 DRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 454 DRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 9999999999999999999999999999999999999876 799999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=1.5e-38 Score=301.28 Aligned_cols=194 Identities=21% Similarity=0.330 Sum_probs=162.6
Q ss_pred CCCCCCCCCCCCccC------CCCCcccccccCc--cCCCC--cccchhhhhhhHHHHHhhhhhccc----C--CCCCCC
Q 027609 9 SKRGSRWPLQWPLRL------EKPPYWLNSEAGV--YGKAA--PEDFTADYQHWKNVVSKSYLNGMG----I--NWSFVR 72 (221)
Q Consensus 9 ~~~~~~~p~~WP~rl------~~~p~rl~~~~~~--~~~~~--~~~f~~d~~~W~~~v~~~Y~~~L~----i--~~~~~r 72 (221)
.++||+.|.+||+++ |+|+++|++.|+. |-+.+ .-.|......|.+.|.+ |.+.|. + ..+.+|
T Consensus 41 ~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~-Yid~i~~~~~~~~~~g~iR 119 (506)
T PF03141_consen 41 PPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADH-YIDQIAEMIPLIKWGGGIR 119 (506)
T ss_pred CCccCCCCCCCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccCCHHH-HHHHHHHHhhccccCCceE
Confidence 356999999999999 8899999987665 22222 22366788889999988 997665 3 557899
Q ss_pred eEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCC-CccCeeeeccccccccccHH
Q 027609 73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKKSLK 150 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~d~~ 150 (221)
.+||+|||+|+|||+|++++|.+|+++|.|.+ .++|+|.|||++.++.-.+..-.||| ++||+|||++|+..|..+-+
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g 199 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDG 199 (506)
T ss_pred EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhccc
Confidence 99999999999999999999999999999986 59999999999887665433344687 99999999999999998778
Q ss_pred HHHHHhhhhccCCeEEEEEcC----------hhhHHHHHHHHHhcCCeEEEeecCCCeeEEEEEecc
Q 027609 151 AVVAEVDRILRPDGNLILRDD----------AETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKTY 207 (221)
Q Consensus 151 ~vL~EmdRVLRPGG~~ii~d~----------~~~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K~~ 207 (221)
.+|.|+|||||||||||++.+ ...+++|++++++|||+.... +..+.|+||+.
T Consensus 200 ~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~----~~~~aIwqKp~ 262 (506)
T PF03141_consen 200 FLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAE----KGDTAIWQKPT 262 (506)
T ss_pred ceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhee----eCCEEEEeccC
Confidence 999999999999999999954 346899999999999998765 34499999975
No 3
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.72 E-value=7.2e-18 Score=122.26 Aligned_cols=89 Identities=25% Similarity=0.450 Sum_probs=70.3
Q ss_pred EeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccc---ee-ccccccCCCCC-CccCeeeecccccccccc
Q 027609 75 MDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFG---LY-HDWCESFNTYP-RTYDLLHADHLFSTIKKS 148 (221)
Q Consensus 75 LD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~---~~-~d~~e~f~~yp-~sFDlVh~~~v~~h~~~d 148 (221)
||+|||+|.++..|++++. .+++++|.+ ++++.+.++.... .. .| .+.+ +|| ++||+|+|..+++|+. +
T Consensus 1 LdiG~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d-~~~l-~~~~~sfD~v~~~~~~~~~~-~ 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG--ASVTGIDISEEMLEQARKRLKNEGVSFRQGD-AEDL-PFPDNSFDVVFSNSVLHHLE-D 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT--CEEEEEES-HHHHHHHHHHTTTSTEEEEESB-TTSS-SS-TT-EEEEEEESHGGGSS-H
T ss_pred CEecCcCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHhcccccCchheeeh-HHhC-ccccccccccccccceeecc-C
Confidence 8999999999999999932 257888886 5899888885432 22 34 3445 576 9999999999999996 8
Q ss_pred HHHHHHHhhhhccCCeEEEE
Q 027609 149 LKAVVAEVDRILRPDGNLIL 168 (221)
Q Consensus 149 ~~~vL~EmdRVLRPGG~~ii 168 (221)
+..++.|+.|+|||||+++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 99999999999999999986
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.72 E-value=1.3e-17 Score=146.94 Aligned_cols=115 Identities=18% Similarity=0.303 Sum_probs=92.0
Q ss_pred hhhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCcc------ceecc
Q 027609 49 YQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLF------GLYHD 121 (221)
Q Consensus 49 ~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~------~~~~d 121 (221)
.+.|++..-. .+.+. +..+|||++||+|-+|..+++..- ...++++|.+ +||+.+.+|-.- ..++.
T Consensus 36 ~~~Wr~~~i~----~~~~~--~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~ 108 (238)
T COG2226 36 HRLWRRALIS----LLGIK--PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVG 108 (238)
T ss_pred hHHHHHHHHH----hhCCC--CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEe
Confidence 3678776643 23222 689999999999999999998732 4578999997 599999999431 12333
Q ss_pred ccccCCCCC-CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 122 WCESFNTYP-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 122 ~~e~f~~yp-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
-+|.+| || +|||+|.|+..|.+.. |+..+|.||.|||||||.+++-|..
T Consensus 109 dAe~LP-f~D~sFD~vt~~fglrnv~-d~~~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 109 DAENLP-FPDNSFDAVTISFGLRNVT-DIDKALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred chhhCC-CCCCccCEEEeeehhhcCC-CHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 366675 88 9999999999999999 9999999999999999999988653
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.65 E-value=1.7e-16 Score=138.76 Aligned_cols=116 Identities=17% Similarity=0.284 Sum_probs=75.5
Q ss_pred hhhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----c--cceecc
Q 027609 49 YQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----L--FGLYHD 121 (221)
Q Consensus 49 ~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l--~~~~~d 121 (221)
.+.|++.+.. .++ .....+|||+|||+|-++..|+++-.....|+++|.+ +||+.+.+|. . +..+..
T Consensus 32 ~~~wr~~~~~----~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 32 DRRWRRKLIK----LLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp -----SHHHH----HHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHHh----ccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 3678876644 222 3346699999999999999998763223368999997 5999998872 2 122232
Q ss_pred ccccCCCCC-CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 122 WCESFNTYP-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 122 ~~e~f~~yp-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
-+|.+ ||| +|||.|.|+..+++++ |+..+|.||.|||||||.+++-|-.
T Consensus 106 da~~l-p~~d~sfD~v~~~fglrn~~-d~~~~l~E~~RVLkPGG~l~ile~~ 155 (233)
T PF01209_consen 106 DAEDL-PFPDNSFDAVTCSFGLRNFP-DRERALREMYRVLKPGGRLVILEFS 155 (233)
T ss_dssp BTTB---S-TT-EEEEEEES-GGG-S-SHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CHHHh-cCCCCceeEEEHHhhHHhhC-CHHHHHHHHHHHcCCCeEEEEeecc
Confidence 25555 477 9999999999999898 8999999999999999999988743
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.62 E-value=1.2e-15 Score=134.77 Aligned_cols=99 Identities=14% Similarity=0.171 Sum_probs=78.1
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcC-------ccc--eeccccccCCCCC-CccCeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERG-------LFG--LYHDWCESFNTYP-RTYDLLH 137 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRG-------l~~--~~~d~~e~f~~yp-~sFDlVh 137 (221)
...+|||+|||+|.++..|+++ +.. .+++++|.+ +|++.+.+|. ... .+..-++.+ +|+ ++||+|.
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~~~~sfD~V~ 150 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PFDDCYFDAIT 150 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CCCCCCEeEEE
Confidence 3678999999999999988875 321 267899987 5999987762 111 222223444 477 8999999
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
|+.+++|++ |+..+|.|+.|||||||.+++.|-
T Consensus 151 ~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 151 MGYGLRNVV-DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred EecccccCC-CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 999999998 899999999999999999999864
No 7
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.59 E-value=6.1e-16 Score=122.69 Aligned_cols=96 Identities=20% Similarity=0.360 Sum_probs=75.9
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCC-CccCeeeecccccccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIK 146 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~ 146 (221)
....+|||+|||+|.++..|++.+. +++++|.+ .+++. +-.....++- ....++ ++||+|+|..+|+|++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~--~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDA--QDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEEC--HTHHCHSSSEEEEEEESSGGGSS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhh--hhhhccccchhhHhhHHHHhhcc
Confidence 4578999999999999999999876 57888876 36655 2222222221 122345 9999999999999999
Q ss_pred ccHHHHHHHhhhhccCCeEEEEEcChh
Q 027609 147 KSLKAVVAEVDRILRPDGNLILRDDAE 173 (221)
Q Consensus 147 ~d~~~vL~EmdRVLRPGG~~ii~d~~~ 173 (221)
|+..+|.++.|+|||||++++.+...
T Consensus 93 -d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 93 -DPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp -HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred -cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 89999999999999999999998763
No 8
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.57 E-value=6.8e-15 Score=128.30 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=79.9
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCCCccCeeeecccccc
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFST 144 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h 144 (221)
+......+|||+|||+|.++..|+++.. ..+++++|.+ .|++.+.++++--...|. +.++ .+++||+|+|+.+|+|
T Consensus 25 l~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~ 101 (255)
T PRK14103 25 VGAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGVDARTGDV-RDWK-PKPDTDVVVSNAALQW 101 (255)
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCCcEEEcCh-hhCC-CCCCceEEEEehhhhh
Confidence 4444568999999999999999988721 1257899986 599999988653233442 3332 2389999999999999
Q ss_pred ccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 145 IKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 145 ~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
++ |+..+|.|+.|+|||||++++..
T Consensus 102 ~~-d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 102 VP-EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred CC-CHHHHHHHHHHhCCCCcEEEEEc
Confidence 88 89999999999999999999974
No 9
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.52 E-value=4e-14 Score=122.64 Aligned_cols=98 Identities=17% Similarity=0.203 Sum_probs=78.2
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc-cce-eccccccCCCCC-CccCeeeecccc
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-FGL-YHDWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-~~~-~~d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
......+|||+|||+|.++..|.+++. +++++|.+ +|++.+.++.. ... ..|. +.+ +|+ ++||+|.|+.++
T Consensus 39 ~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~-~~~-~~~~~~fD~V~s~~~l 113 (251)
T PRK10258 39 PQRKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDI-ESL-PLATATFDLAWSNLAV 113 (251)
T ss_pred CccCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCc-ccC-cCCCCcEEEEEECchh
Confidence 334578899999999999999988763 56888886 59999988853 122 2343 334 466 899999999888
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
++.. |+..+|.|+.|+|||||.++++.
T Consensus 114 ~~~~-d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 114 QWCG-NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred hhcC-CHHHHHHHHHHHcCCCeEEEEEe
Confidence 8666 89999999999999999999985
No 10
>PLN02244 tocopherol O-methyltransferase
Probab=99.51 E-value=3.6e-14 Score=129.74 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=75.2
Q ss_pred CCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHH----cCccc----eeccccccCCCCC-CccCeee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYE----RGLFG----LYHDWCESFNTYP-RTYDLLH 137 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~e----RGl~~----~~~d~~e~f~~yp-~sFDlVh 137 (221)
....+|||+|||+|.++..|+++ +. +|+++|.+ .|++.+.+ +|+.. ...|. +.+ +|+ ++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~-~~~-~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADA-LNQ-PFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc-ccC-CCCCCCccEEE
Confidence 45678999999999999999886 43 56888876 47765544 35532 22343 223 466 9999999
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
|..+++|+. |+..+|.|+.|+|||||.+++.+
T Consensus 192 s~~~~~h~~-d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 192 SMESGEHMP-DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ECCchhccC-CHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999999 89999999999999999999975
No 11
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.51 E-value=2.3e-14 Score=131.09 Aligned_cols=98 Identities=11% Similarity=0.158 Sum_probs=78.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----c---cceeccccccCCCCC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----L---FGLYHDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l---~~~~~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|+..+. +|+++|.+ ++++.+.++. + +..++.-++.++ ++ ++||+|.|..
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-~~~~~FD~Vi~~~ 206 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-DEGRKFDAVLSLE 206 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-hccCCCCEEEEhh
Confidence 456899999999999999988764 56899986 5999887652 1 112222133343 44 8999999999
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+++|+. |+..+|.|+.|+|||||.+++++.+
T Consensus 207 vLeHv~-d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 207 VIEHVA-NPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred HHHhcC-CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999 8999999999999999999999643
No 12
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.50 E-value=4.6e-14 Score=123.21 Aligned_cols=98 Identities=19% Similarity=0.199 Sum_probs=76.9
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---eeccccccCCCCC-CccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LYHDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~~d~~e~f~~yp-~sFDlVh~~ 139 (221)
....+|||+|||+|.++..|++++. +|+++|.+ +|++.+.++ |+.. .++.-.+.+.+++ ++||+|.|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~ 119 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFH 119 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEeh
Confidence 3457999999999999999999864 56888986 588887765 3321 2221122244455 899999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.+++|+. +|..+|.|+.|+|||||++++..
T Consensus 120 ~vl~~~~-~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 120 AVLEWVA-DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred hHHHhhC-CHHHHHHHHHHHcCCCeEEEEEE
Confidence 9999988 89999999999999999998864
No 13
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.47 E-value=3.1e-13 Score=117.36 Aligned_cols=98 Identities=20% Similarity=0.223 Sum_probs=75.9
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccc--ee-ccccccCCCCCCccCeeeeccccc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFG--LY-HDWCESFNTYPRTYDLLHADHLFS 143 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~--~~-~d~~e~f~~yp~sFDlVh~~~v~~ 143 (221)
.....+|||+|||+|.++..|+++. ...+++++|.+ .|++.+.++ +.. .+ .|. +.+. .+++||+|+|+.+|+
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~-~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~ 104 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSR-LPDCQFVEADI-ASWQ-PPQALDLIFANASLQ 104 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHh-CCCCeEEECch-hccC-CCCCccEEEEccChh
Confidence 3457899999999999999998762 11257889986 599988877 322 22 232 1121 238999999999999
Q ss_pred cccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 144 TIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 144 h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
|.. |+..+|.++.|+|||||.+++..
T Consensus 105 ~~~-d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 105 WLP-DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred hCC-CHHHHHHHHHHhcCCCcEEEEEC
Confidence 888 89999999999999999999974
No 14
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.45 E-value=1.9e-13 Score=124.63 Aligned_cols=114 Identities=14% Similarity=0.074 Sum_probs=78.8
Q ss_pred hhHHHHHhhhhhccc-CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHH---HHc-Cc---cceecc
Q 027609 51 HWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPII---YER-GL---FGLYHD 121 (221)
Q Consensus 51 ~W~~~v~~~Y~~~L~-i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a---~eR-Gl---~~~~~d 121 (221)
.|+.... |...+. +.....++|||+|||+|.++..++..+.. .++++|.+. |+..+ ... +. +....-
T Consensus 103 e~~s~~~--~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~ 178 (314)
T TIGR00452 103 EWRSDIK--WDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL 178 (314)
T ss_pred HHHHHHH--HHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC
Confidence 4655553 233333 44555789999999999999999888753 468888864 65432 111 11 111110
Q ss_pred ccccCCCCCCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 122 WCESFNTYPRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 122 ~~e~f~~yp~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
-.+.++ ++.+||+|.|..++.|+. +|..+|.|+.|+|||||.+++.+
T Consensus 179 ~ie~lp-~~~~FD~V~s~gvL~H~~-dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 179 GIEQLH-ELYAFDTVFSMGVLYHRK-SPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred CHHHCC-CCCCcCEEEEcchhhccC-CHHHHHHHHHHhcCCCCEEEEEE
Confidence 012232 337899999999999998 89999999999999999999863
No 15
>PRK05785 hypothetical protein; Provisional
Probab=99.44 E-value=1.7e-13 Score=118.80 Aligned_cols=110 Identities=16% Similarity=0.287 Sum_probs=80.6
Q ss_pred hhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCC
Q 027609 50 QHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNT 128 (221)
Q Consensus 50 ~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~ 128 (221)
..|++.+.......+ . ...+|||+|||+|.++..|+++. ..+++++|.+ +|++.+.++.- -...| ++.+ |
T Consensus 35 ~~wr~~~~~~l~~~~--~--~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~~-~~~~d-~~~l-p 105 (226)
T PRK05785 35 VRWRAELVKTILKYC--G--RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVADD-KVVGS-FEAL-P 105 (226)
T ss_pred HHHHHHHHHHHHHhc--C--CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhccc-eEEec-hhhC-C
Confidence 567765543122211 1 25689999999999999998873 1268999987 69999988742 12333 4545 5
Q ss_pred CC-CccCeeeeccccccccccHHHHHHHhhhhccCCe-EEEEE
Q 027609 129 YP-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDG-NLILR 169 (221)
Q Consensus 129 yp-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG-~~ii~ 169 (221)
|+ ++||+|.|+.+++|+. |++.+|.||.|||||.+ .+.++
T Consensus 106 ~~d~sfD~v~~~~~l~~~~-d~~~~l~e~~RvLkp~~~ile~~ 147 (226)
T PRK05785 106 FRDKSFDVVMSSFALHASD-NIEKVIAEFTRVSRKQVGFIAMG 147 (226)
T ss_pred CCCCCEEEEEecChhhccC-CHHHHHHHHHHHhcCceEEEEeC
Confidence 76 9999999999999888 89999999999999954 33344
No 16
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.44 E-value=3.2e-13 Score=123.04 Aligned_cols=100 Identities=18% Similarity=0.113 Sum_probs=73.1
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHH--HHHcCc-----cceeccccccCCCCCCccCeee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPI--IYERGL-----FGLYHDWCESFNTYPRTYDLLH 137 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~--a~eRGl-----~~~~~d~~e~f~~yp~sFDlVh 137 (221)
+.....++|||+|||+|.++..|+..+.. .|+++|.+. ++.. +..+.. +..+..-.+.++ ++++||+|+
T Consensus 118 l~~l~g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp-~~~~FD~V~ 194 (322)
T PRK15068 118 LSPLKGRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP-ALKAFDTVF 194 (322)
T ss_pred hCCCCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC-CcCCcCEEE
Confidence 33445689999999999999999988643 368888763 5432 111211 112221123343 379999999
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
|..+++|.. |+..+|.++.|+|||||.+++.
T Consensus 195 s~~vl~H~~-dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 195 SMGVLYHRR-SPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred ECChhhccC-CHHHHHHHHHHhcCCCcEEEEE
Confidence 999999988 8999999999999999999987
No 17
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.43 E-value=2.9e-12 Score=108.87 Aligned_cols=147 Identities=19% Similarity=0.292 Sum_probs=100.7
Q ss_pred hhhHHHHHhhhhhccc-CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH----cCccc--eecc
Q 027609 50 QHWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE----RGLFG--LYHD 121 (221)
Q Consensus 50 ~~W~~~v~~~Y~~~L~-i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e----RGl~~--~~~d 121 (221)
..|+++.-. -..... +.. ..+|||+|||+|.++..++.+.- ...|+++|.+ ++++.+.+ .|+.. .++.
T Consensus 27 ~~~~~~~~d-~l~l~~~l~~--g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~ 102 (187)
T PRK00107 27 ELWERHILD-SLAIAPYLPG--GERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHG 102 (187)
T ss_pred HHHHHHHHH-HHHHHhhcCC--CCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEec
Confidence 378777733 111112 333 67899999999999998875321 1257888886 57765554 34422 2332
Q ss_pred ccccCCCCCCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEee--c----C
Q 027609 122 WCESFNTYPRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIY--T----N 195 (221)
Q Consensus 122 ~~e~f~~yp~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~~--~----~ 195 (221)
-++.+.. +++||+|.|+. .. ++..++.++.|+|||||.+++-+......++.++++.+.|.+.... + +
T Consensus 103 d~~~~~~-~~~fDlV~~~~----~~-~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 176 (187)
T PRK00107 103 RAEEFGQ-EEKFDVVTSRA----VA-SLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGLD 176 (187)
T ss_pred cHhhCCC-CCCccEEEEcc----cc-CHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCCC
Confidence 2333432 57999999974 23 6789999999999999999999998899999999999999975432 1 2
Q ss_pred CCeeEEEEEec
Q 027609 196 DNQGMLCVHKT 206 (221)
Q Consensus 196 ~~e~~l~~~K~ 206 (221)
+...+.|.+|+
T Consensus 177 ~~~~~~~~~~~ 187 (187)
T PRK00107 177 GERHLVIIRKK 187 (187)
T ss_pred CcEEEEEEecC
Confidence 24455566663
No 18
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.43 E-value=2.4e-13 Score=120.21 Aligned_cols=100 Identities=17% Similarity=0.257 Sum_probs=76.7
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc----ccee-ccccccCCCCC-CccCeeeecc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL----FGLY-HDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl----~~~~-~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
.....+|||+|||+|.++..|+... ..+++++|.+ ++++.+.++.. +... .|. .. .+|| ++||+|+|..
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~-~~-~~~~~~~FD~V~s~~ 125 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDI-LK-KDFPENTFDMIYSRD 125 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCc-cc-CCCCCCCeEEEEEhh
Confidence 3447789999999999999887642 1257888886 58888888632 1111 232 11 2477 8999999998
Q ss_pred ccccccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 141 LFSTIKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 141 v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
++.|+.. ++..+|.|+.|+|||||++++.|.
T Consensus 126 ~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 126 AILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred hHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8988864 899999999999999999999974
No 19
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.43 E-value=3.2e-13 Score=102.06 Aligned_cols=97 Identities=23% Similarity=0.330 Sum_probs=71.9
Q ss_pred CCeEEeecCcchHHHHHHhh--CCCeEEEeccCCCC-CCHHHHHHcC----ccc---ee-ccccccCCCCCCccCeeeec
Q 027609 71 VRNVMDMRAVYGGFAAALKD--LKVWVMNVVPIESP-DTLPIIYERG----LFG---LY-HDWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~--~~v~vmnv~~~d~~-~~l~~a~eRG----l~~---~~-~d~~e~f~~yp~sFDlVh~~ 139 (221)
..+|||+|||+|.++.+|++ .+.. ++++|.+ ++++.+.++- ... .+ .|+ .....++..||+|.|.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICS 77 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEEC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEEC
Confidence 57899999999999999999 5543 6888886 5888887773 211 22 343 1123345789999999
Q ss_pred c-cccccc--ccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 140 H-LFSTIK--KSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 140 ~-v~~h~~--~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
. +++++. ++...+|.++.+.|||||+++++++
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 8 444443 2678999999999999999999874
No 20
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.42 E-value=3.3e-13 Score=127.28 Aligned_cols=97 Identities=21% Similarity=0.331 Sum_probs=77.1
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC--cc---ce-eccccccCCCCC-CccCeeeecc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG--LF---GL-YHDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG--l~---~~-~~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
....+|||+|||+|.++..|+++.- .+++++|.+ ++++.+.++. +. .. ..|+.+ .++| ++||+|+|..
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~I~s~~ 340 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTK--KTYPDNSFDVIYSRD 340 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCccc--CCCCCCCEEEEEECC
Confidence 3567999999999999999987631 257899987 5888887652 21 11 234332 3466 8999999999
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
++.|+. |+..+|.|+.|+|||||.+++.|
T Consensus 341 ~l~h~~-d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 341 TILHIQ-DKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred cccccC-CHHHHHHHHHHHcCCCeEEEEEE
Confidence 999999 89999999999999999999986
No 21
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.41 E-value=3.4e-13 Score=115.59 Aligned_cols=92 Identities=22% Similarity=0.306 Sum_probs=79.4
Q ss_pred CCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCC-CccCeeeeccccccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKK 147 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~ 147 (221)
..+|||+|||.|.+.++|.+. ++. ..+++.+ +.+..+.+||+.=+.+|+-+.+..|| ++||.|.+++.+++..
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~k~v~---g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~- 89 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDEKQVD---GYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR- 89 (193)
T ss_pred CCEEEecCCCchHHHHHHHHhcCCe---EEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh-
Confidence 689999999999999999884 554 4677765 47888999999767778888888899 9999999999999999
Q ss_pred cHHHHHHHhhhhccCCeEEEEE
Q 027609 148 SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
+|..+|.||-|| |...|++
T Consensus 90 ~P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 90 RPDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred HHHHHHHHHHHh---cCeEEEE
Confidence 899999999877 6678888
No 22
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.41 E-value=5.6e-14 Score=105.02 Aligned_cols=90 Identities=23% Similarity=0.342 Sum_probs=54.2
Q ss_pred EeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCCCC-CccCeeeeccccccc
Q 027609 75 MDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNTYP-RTYDLLHADHLFSTI 145 (221)
Q Consensus 75 LD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~yp-~sFDlVh~~~v~~h~ 145 (221)
||+|||+|.++..|+++- ....++++|.+ .|++.+++| +... .. .+-.+.+...+ ++||+|.+..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998873 34467888886 588655555 1111 11 11111122233 699999999999999
Q ss_pred cccHHHHHHHhhhhccCCeEE
Q 027609 146 KKSLKAVVAEVDRILRPDGNL 166 (221)
Q Consensus 146 ~~d~~~vL~EmdRVLRPGG~~ 166 (221)
. ++..+|..+.++|||||.+
T Consensus 80 ~-~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 E-DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--HHHHHHHHTTT-TSS-EE
T ss_pred h-hHHHHHHHHHHHcCCCCCC
Confidence 6 8999999999999999986
No 23
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.41 E-value=5.8e-13 Score=113.53 Aligned_cols=100 Identities=15% Similarity=0.274 Sum_probs=74.9
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--eeccccccCCCCC-CccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LYHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
...+|||+|||+|.++..|++.--...+++++|.+ ++++.+.++ ++.. .++.-++.+ +++ ++||+|++..+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-PFDDNSFDYVTIGFG 123 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-CCCCCCccEEEEecc
Confidence 36799999999999999998751111257888886 588777655 2222 222112223 366 89999999999
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
++|+. ++..+|.|+.|+|||||++++.+.
T Consensus 124 l~~~~-~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 124 LRNVP-DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cccCC-CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 98888 899999999999999999998864
No 24
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.41 E-value=6.4e-13 Score=117.86 Aligned_cols=129 Identities=13% Similarity=0.173 Sum_probs=90.5
Q ss_pred cccchhhhhhhHHHHHhhhhhccc-CCCCCCCeEEeecCcchH----HHHHHhhCC----CeEEEeccCCCC-CCHHHHH
Q 027609 42 PEDFTADYQHWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYGG----FAAALKDLK----VWVMNVVPIESP-DTLPIIY 111 (221)
Q Consensus 42 ~~~f~~d~~~W~~~v~~~Y~~~L~-i~~~~~r~VLD~GcG~G~----faa~L~~~~----v~vmnv~~~d~~-~~l~~a~ 111 (221)
...|-.|...|..........+++ .......+|+|+|||+|. +|..|.+.. .+...|+++|.+ .|++.|.
T Consensus 70 ~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar 149 (264)
T smart00138 70 ETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKAR 149 (264)
T ss_pred CCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHH
Confidence 445677778887776653333332 223345789999999995 566665542 134578999997 5999887
Q ss_pred HcC--------cc-------------------------c-eeccccccCCCCC-CccCeeeeccccccccc-cHHHHHHH
Q 027609 112 ERG--------LF-------------------------G-LYHDWCESFNTYP-RTYDLLHADHLFSTIKK-SLKAVVAE 155 (221)
Q Consensus 112 eRG--------l~-------------------------~-~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~-d~~~vL~E 155 (221)
+.- ++ . ..+|..+ +++| ++||+|.|..+|+|+.. +...++.+
T Consensus 150 ~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~--~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~ 227 (264)
T smart00138 150 AGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLA--ESPPLGDFDLIFCRNVLIYFDEPTQRKLLNR 227 (264)
T ss_pred cCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCC--CCCccCCCCEEEechhHHhCCHHHHHHHHHH
Confidence 631 11 0 1345443 2345 99999999999999874 56689999
Q ss_pred hhhhccCCeEEEEEcCh
Q 027609 156 VDRILRPDGNLILRDDA 172 (221)
Q Consensus 156 mdRVLRPGG~~ii~d~~ 172 (221)
+.|+|+|||++++....
T Consensus 228 l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 228 FAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHhCCCeEEEEECcc
Confidence 99999999999998754
No 25
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.40 E-value=8.9e-13 Score=111.62 Aligned_cols=94 Identities=14% Similarity=0.234 Sum_probs=71.1
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH----cCccc---eeccccccCCCCCCccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE----RGLFG---LYHDWCESFNTYPRTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e----RGl~~---~~~d~~e~f~~yp~sFDlVh~~~v 141 (221)
...+|||+|||+|.++..|++++. +|+++|.+ .+++.+.+ +|+.+ ...|+.+ + +++.+||+|.|..+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~ 104 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVV 104 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecc
Confidence 357899999999999999999864 56888886 47765543 34422 2234322 2 34678999999999
Q ss_pred cccccc-cHHHHHHHhhhhccCCeEEEE
Q 027609 142 FSTIKK-SLKAVVAEVDRILRPDGNLIL 168 (221)
Q Consensus 142 ~~h~~~-d~~~vL~EmdRVLRPGG~~ii 168 (221)
++|+.. +...++.++.|+|||||++++
T Consensus 105 ~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 105 LMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 987664 678999999999999999654
No 26
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.39 E-value=6.2e-13 Score=114.79 Aligned_cols=99 Identities=11% Similarity=0.138 Sum_probs=74.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCC-eEEEeccCCCC-CCHHHHHHc----Ccc---ceeccccccCCCCC-CccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKV-WVMNVVPIESP-DTLPIIYER----GLF---GLYHDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v-~vmnv~~~d~~-~~l~~a~eR----Gl~---~~~~d~~e~f~~yp-~sFDlVh~~ 139 (221)
...+|||+|||+|.++..|+++-. ...+++++|.+ +|++.+.++ +.. ..++ ..+..++ ..||+|.|+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~d~v~~~ 129 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILC---NDIRHVEIKNASMVILN 129 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE---CChhhCCCCCCCEEeee
Confidence 467899999999999998887511 12257899986 699888775 211 1222 1222344 679999999
Q ss_pred cccccccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 140 HLFSTIKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 140 ~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
.+++|++. ++..+|.|+.|+|||||.++++|.
T Consensus 130 ~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 99998864 678999999999999999999975
No 27
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.39 E-value=5.8e-13 Score=113.05 Aligned_cols=115 Identities=24% Similarity=0.362 Sum_probs=84.3
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---ee-ccccccCCCCCCccCeeeecccc
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LY-HDWCESFNTYPRTYDLLHADHLF 142 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~-~d~~e~f~~yp~sFDlVh~~~v~ 142 (221)
++|||+|||+|+++..++++.-. .+++++|.+ ++++.+.++ |+.+ .+ .|..+ . +++++||+|++..++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~-~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~-~-~~~~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPH-LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK-D-PFPDTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc-C-CCCCCCCEeehHHHH
Confidence 47999999999999999876311 256777776 477766654 4422 22 23222 1 456899999999999
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEEcChh----------------hHHHHHHHHHhcCCeEE
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILRDDAE----------------TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~----------------~~~~i~~i~~~l~W~~~ 190 (221)
+|.. ++..+|.++.|+|||||++++.+... ...++.+++..-.+++.
T Consensus 78 ~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~ 140 (224)
T smart00828 78 HHIK-DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVV 140 (224)
T ss_pred HhCC-CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEE
Confidence 9998 89999999999999999999986421 14556677777777764
No 28
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.39 E-value=6.3e-13 Score=117.31 Aligned_cols=98 Identities=15% Similarity=0.250 Sum_probs=79.9
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceec-cc----cccCCCCC-CccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYH-DW----CESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~-d~----~e~f~~yp-~sFDlVh~~~v~ 142 (221)
...+|||+|||-|.++..|+..|. +|+++|.+ +++++|..+.+.+-+. ++ .|.+. .. .+||+|.|-.++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~-~~~~~FDvV~cmEVl 134 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLA-SAGGQFDVVTCMEVL 134 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHH-hcCCCccEEEEhhHH
Confidence 577899999999999999999995 57999997 5999998775533221 11 11111 24 799999999999
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+|++ ||+.++.+..+.+||||.+++|+.+
T Consensus 135 EHv~-dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 135 EHVP-DPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred HccC-CHHHHHHHHHHHcCCCcEEEEeccc
Confidence 9999 9999999999999999999999764
No 29
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.39 E-value=8e-13 Score=111.16 Aligned_cols=98 Identities=17% Similarity=0.219 Sum_probs=75.9
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCcc--c-eeccccccCCCCC-CccCeeeecccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLF--G-LYHDWCESFNTYP-RTYDLLHADHLFST 144 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~--~-~~~d~~e~f~~yp-~sFDlVh~~~v~~h 144 (221)
...+|||+|||+|.++..|++.+.. ..++.+|.+ .+++.+.++.-. . ...|. +.++ ++ ++||+|.|+.+++|
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~-~~~~~fD~vi~~~~l~~ 110 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQ-AEFIALDISAGMLAQAKTKLSENVQFICGDA-EKLP-LEDSSFDLIVSNLALQW 110 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCC-CcEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCC-CCCCceeEEEEhhhhhh
Confidence 3478999999999999999887532 246888875 588777776321 1 23343 2233 45 99999999999998
Q ss_pred ccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 145 IKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 145 ~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
.. ++..+|.++.|+|||||++++.+.
T Consensus 111 ~~-~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 111 CD-DLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred cc-CHHHHHHHHHHHcCCCcEEEEEeC
Confidence 87 899999999999999999999853
No 30
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.38 E-value=1.4e-12 Score=104.96 Aligned_cols=100 Identities=17% Similarity=0.348 Sum_probs=76.5
Q ss_pred CCCeEEeecCcchHHHHHHhh-CCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCC-CCCccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKD-LKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNT-YPRTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~-~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~-yp~sFDlVh~~ 139 (221)
+..+|||+|||+|.++..|++ .+- ..+++++|.+ ++++.+.++ |+.. .+ .|.-+ ++. |++.||+|.+.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~-~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNP-GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTT-TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCC-CCEEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 367899999999999999994 321 1247899986 588877773 5532 22 34333 321 45899999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
.+++|.. ++..+|.++.|+|+|||.+++.+..
T Consensus 81 ~~l~~~~-~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFP-DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTS-HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhcc-CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9998888 8999999999999999999999877
No 31
>PRK08317 hypothetical protein; Provisional
Probab=99.38 E-value=1.4e-12 Score=109.27 Aligned_cols=101 Identities=25% Similarity=0.372 Sum_probs=76.6
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc--Cc---ccee-ccccccCCCCC-CccCeeeec
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER--GL---FGLY-HDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR--Gl---~~~~-~d~~e~f~~yp-~sFDlVh~~ 139 (221)
.....+|||+|||+|.++..++++-...-+++++|.+ ++++.+.++ +. +... .|. +.+ +++ .+||+|++.
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~-~~~-~~~~~~~D~v~~~ 94 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA-DGL-PFPDGSFDAVRSD 94 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc-ccC-CCCCCCceEEEEe
Confidence 3447799999999999999998762111257888886 588888776 11 1111 232 112 355 899999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
.+++|+. ++..++.++.|+|||||++++.+.
T Consensus 95 ~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 95 RVLQHLE-DPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred chhhccC-CHHHHHHHHHHHhcCCcEEEEEec
Confidence 9999999 899999999999999999998763
No 32
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.37 E-value=1.3e-12 Score=110.36 Aligned_cols=115 Identities=13% Similarity=0.200 Sum_probs=80.6
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH----cCcc--ceeccccccCCCCCCccCeeeeccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE----RGLF--GLYHDWCESFNTYPRTYDLLHADHLFS 143 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e----RGl~--~~~~d~~e~f~~yp~sFDlVh~~~v~~ 143 (221)
..+|||+|||+|.++..|++++. .|+++|.+ .+++.+.+ .|+. ....|.. . .+++.+||+|.|+.+|+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~-~-~~~~~~fD~I~~~~~~~ 105 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDIN-A-AALNEDYDFIFSTVVFM 105 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccch-h-ccccCCCCEEEEecccc
Confidence 46899999999999999999863 57888886 47776543 3442 1122321 1 23457899999999998
Q ss_pred cccc-cHHHHHHHhhhhccCCeEEEEEcC-----------hh---hHHHHHHHHHhcCCeEEEe
Q 027609 144 TIKK-SLKAVVAEVDRILRPDGNLILRDD-----------AE---TIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 144 h~~~-d~~~vL~EmdRVLRPGG~~ii~d~-----------~~---~~~~i~~i~~~l~W~~~~~ 192 (221)
|+.. +...++.++.|+|||||++++-+. .+ ..+++.+.+.. |+....
T Consensus 106 ~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~--~~~~~~ 167 (195)
T TIGR00477 106 FLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYAD--WELLKY 167 (195)
T ss_pred cCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCC--CeEEEe
Confidence 8763 678999999999999999655421 11 14566666654 776544
No 33
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.37 E-value=9.8e-13 Score=114.81 Aligned_cols=100 Identities=10% Similarity=0.144 Sum_probs=73.6
Q ss_pred CCCeEEeecCcchHHHHHHhhC---CCeEEEeccCCCC-CCHHHHHHc----CccceeccccccCCCCC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESP-DTLPIIYER----GLFGLYHDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~---~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~~~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|+.. +- ..++++|.+ +|++.+.++ |+...+.=.+..+..+| ..||+|.|+.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~--~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDN--CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhh
Confidence 4578999999999999888762 22 257899986 699988776 22211100011233344 6699999999
Q ss_pred ccccccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 141 LFSTIKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 141 v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+++|+.. +...++.|+.|+|||||.+++.|.
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9998864 567899999999999999999973
No 34
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.33 E-value=3.3e-12 Score=114.06 Aligned_cols=120 Identities=16% Similarity=0.208 Sum_probs=89.3
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeE------EEeccCCCC-CCHHHHHHcC----ccc------eeccccccCCC
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWV------MNVVPIESP-DTLPIIYERG----LFG------LYHDWCESFNT 128 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~v------mnv~~~d~~-~~l~~a~eRG----l~~------~~~d~~e~f~~ 128 (221)
+.+....++|||+||+|-+|-.+.++ +.. -+|+-.|.+ +||.++.+|. +-. +..| +|.+|
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~-v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d-AE~Lp- 172 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRH-VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD-AEDLP- 172 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHh-hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC-cccCC-
Confidence 45677899999999999999888776 211 356777774 6998877774 321 1223 67676
Q ss_pred CC-CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChhhH-HHHHHHHHhcCCeE
Q 027609 129 YP-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETI-VEVEDLVKSLHWDV 189 (221)
Q Consensus 129 yp-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~-~~i~~i~~~l~W~~ 189 (221)
|| ++||+...+.-+..++ +++.+|.|++|||||||.|.+-+-...- +-++.++..--.++
T Consensus 173 Fdd~s~D~yTiafGIRN~t-h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 173 FDDDSFDAYTIAFGIRNVT-HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV 234 (296)
T ss_pred CCCCcceeEEEecceecCC-CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh
Confidence 98 9999999998888888 8999999999999999999988755443 45555554443333
No 35
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.31 E-value=3.1e-12 Score=114.52 Aligned_cols=105 Identities=21% Similarity=0.374 Sum_probs=70.4
Q ss_pred hhhcccCCCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHH----HHHHcCccceeccccccCCCCCCcc
Q 027609 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLP----IIYERGLFGLYHDWCESFNTYPRTY 133 (221)
Q Consensus 60 Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~----~a~eRGl~~~~~d~~e~f~~yp~sF 133 (221)
+.+.++|++ ..+|||+|||.|+++..++++ |+. |+++..+ ++.+ .+.++|+.+.+.=.+..+..++.+|
T Consensus 54 ~~~~~~l~~--G~~vLDiGcGwG~~~~~~a~~~g~~---v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 54 LCEKLGLKP--GDRVLDIGCGWGGLAIYAAERYGCH---VTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHTTTT--T--T-EEEEES-TTSHHHHHHHHHH--E---EEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHhCCCC--CCEEEEeCCCccHHHHHHHHHcCcE---EEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 344455655 789999999999999999998 765 4666665 3555 4456677543221122233456799
Q ss_pred Ceeeeccccccccc-cHHHHHHHhhhhccCCeEEEEE
Q 027609 134 DLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 134 DlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
|-|.+-.+|.|... +...++.+++|+|||||.+++.
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999999999953 8899999999999999999977
No 36
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.30 E-value=5.2e-12 Score=110.84 Aligned_cols=98 Identities=15% Similarity=0.174 Sum_probs=73.0
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCCCC-CccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~yp-~sFDlVh~~ 139 (221)
...+|||+|||+|..+..++.. +.. .+++++|.+ ++++.+.++ |+.. . ..|. +.+ +++ ++||+|+++
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~-~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l-~~~~~~fD~Vi~~ 153 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPT-GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EAL-PVADNSVDVIISN 153 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhC-CCCCCceeEEEEc
Confidence 4679999999999876655543 221 257888886 588888765 3322 1 1332 223 466 899999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
.+++|.+ +...++.|+.|+|||||.+++.+.
T Consensus 154 ~v~~~~~-d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 154 CVINLSP-DKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred CcccCCC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9998887 889999999999999999999753
No 37
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.30 E-value=1.5e-11 Score=113.39 Aligned_cols=117 Identities=14% Similarity=0.081 Sum_probs=87.6
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCc---ccee-ccccccCCCCC-CccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGL---FGLY-HDWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl---~~~~-~d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
...+|||+|||+|.++..++++ +. .+++.+|.+ +|++.+.++.- +..+ .|. +.+ +|+ ++||+|.++.++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~-e~l-p~~~~sFDvVIs~~~L 188 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDA-EDL-PFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccH-HhC-CCCCCceeEEEEcChh
Confidence 3568999999999999888764 22 257888886 58888887631 1222 232 223 466 899999999999
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEEcCh-----------------hhHHHHHHHHHhcCCeEEE
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILRDDA-----------------ETIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-----------------~~~~~i~~i~~~l~W~~~~ 191 (221)
+|+. ++..+|.|+.|+|||||.+++.+.. +..+++.+++++..++...
T Consensus 189 ~~~~-d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~ 253 (340)
T PLN02490 189 EYWP-DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVK 253 (340)
T ss_pred hhCC-CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEE
Confidence 9988 8999999999999999999886421 1246677888888887643
No 38
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.30 E-value=3.9e-11 Score=99.34 Aligned_cols=118 Identities=13% Similarity=0.189 Sum_probs=87.0
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc-ccee-ccccccCCCCCCccCeeeeccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL-FGLY-HDWCESFNTYPRTYDLLHADHLFS 143 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl-~~~~-~d~~e~f~~yp~sFDlVh~~~v~~ 143 (221)
..+|||+|||+|.++..++.++. .++++|.+ ++++.+.++ ++ +.++ .|+.+ ..+++||+|.|+..++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK---GVRGKFDVILFNPPYL 93 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc---ccCCcccEEEECCCCC
Confidence 46799999999999999998864 57888875 577766654 22 1112 24322 2247999999997776
Q ss_pred cccc--------------------cHHHHHHHhhhhccCCeEEEEEcChhh-HHHHHHHHHhcCCeEEEeec
Q 027609 144 TIKK--------------------SLKAVVAEVDRILRPDGNLILRDDAET-IVEVEDLVKSLHWDVRMIYT 194 (221)
Q Consensus 144 h~~~--------------------d~~~vL~EmdRVLRPGG~~ii~d~~~~-~~~i~~i~~~l~W~~~~~~~ 194 (221)
+... -...+|.++.|+|||||.+++.+.... ..++.+.++...++......
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 165 (179)
T TIGR00537 94 PLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAE 165 (179)
T ss_pred CCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEE
Confidence 5542 035789999999999999999876655 77888888888898876543
No 39
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.29 E-value=1.2e-11 Score=106.19 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=80.3
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccceeccccccCC-------CCC-CccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFN-------TYP-RTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~-------~yp-~sFDlVh~~~v 141 (221)
+..+|||+|||+|.++..|+++....-.|+++|.+.|... .++.-...|..+ .. +++ .+||+|.|+.+
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~---~~v~~i~~D~~~-~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPI---VGVDFLQGDFRD-ELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCC---CCcEEEecCCCC-hHHHHHHHHHhCCCCCCEEecCCC
Confidence 3568999999999999999887322225677777654321 122212234322 11 254 89999999865
Q ss_pred cccccc---c-------HHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhc--CCeEEEe--e----cCCCeeEEEE
Q 027609 142 FSTIKK---S-------LKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSL--HWDVRMI--Y----TNDNQGMLCV 203 (221)
Q Consensus 142 ~~h~~~---d-------~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l--~W~~~~~--~----~~~~e~~l~~ 203 (221)
...... | .+.+|.|+.|+|||||.|++..-.. +.+++++..+ +|+..-. + ..+.|.+++|
T Consensus 127 ~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~ 204 (209)
T PRK11188 127 PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVA 204 (209)
T ss_pred CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHHHHHHHHhCceEEEEECCccccccCceeEEEe
Confidence 443221 1 1579999999999999999964331 2333333333 4544322 2 2358999999
Q ss_pred Ee
Q 027609 204 HK 205 (221)
Q Consensus 204 ~K 205 (221)
+.
T Consensus 205 ~~ 206 (209)
T PRK11188 205 TG 206 (209)
T ss_pred ec
Confidence 74
No 40
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.27 E-value=1.3e-11 Score=115.09 Aligned_cols=98 Identities=21% Similarity=0.342 Sum_probs=74.6
Q ss_pred CCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccce-eccccccCCCCCCccCeeeeccccccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFGL-YHDWCESFNTYPRTYDLLHADHLFSTI 145 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~-~~d~~e~f~~yp~sFDlVh~~~v~~h~ 145 (221)
....+|||+|||+|+++..++++ ++ +|+++|.+ ++++.+.++.- +. +.-.+..+...+++||+|.|..+|+|.
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~-~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehv 241 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCA-GLPVEIRLQDYRDLNGQFDRIVSVGMFEHV 241 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhc-cCeEEEEECchhhcCCCCCEEEEeCchhhC
Confidence 34679999999999999999875 44 57888886 59998888731 10 110011122236899999999999998
Q ss_pred cc-cHHHHHHHhhhhccCCeEEEEEc
Q 027609 146 KK-SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 146 ~~-d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.. ++..++.++.|+|||||++++.+
T Consensus 242 g~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 242 GPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred ChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 53 77899999999999999999974
No 41
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.26 E-value=1.7e-11 Score=103.15 Aligned_cols=126 Identities=17% Similarity=0.266 Sum_probs=83.7
Q ss_pred hhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHH----HcCccc--eec-c
Q 027609 50 QHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIY----ERGLFG--LYH-D 121 (221)
Q Consensus 50 ~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~----eRGl~~--~~~-d 121 (221)
..|+++.... ...+. .....+|||+|||+|.++..|+...- ..+|+++|.+ +|++.+. +.|+.+ ++. |
T Consensus 25 ~~~~~~~~d~-i~~~~--~~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d 100 (181)
T TIGR00138 25 EIWERHILDS-LKLLE--YLDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGR 100 (181)
T ss_pred HHHHHHHHHH-HHHHH--hcCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecc
Confidence 4677766441 11111 22367999999999998888765431 1257888886 4665443 345532 222 3
Q ss_pred ccccCCCCCCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcC
Q 027609 122 WCESFNTYPRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLH 186 (221)
Q Consensus 122 ~~e~f~~yp~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~ 186 (221)
. +.++ .+++||+|.|.. + . +...++.++.|+|||||.+++........++..+.+++|
T Consensus 101 ~-~~~~-~~~~fD~I~s~~-~---~-~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~ 158 (181)
T TIGR00138 101 A-EDFQ-HEEQFDVITSRA-L---A-SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQ 158 (181)
T ss_pred h-hhcc-ccCCccEEEehh-h---h-CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhh
Confidence 2 2232 348999999875 3 3 566788999999999999999988777788877766643
No 42
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.25 E-value=8.9e-11 Score=97.83 Aligned_cols=113 Identities=19% Similarity=0.154 Sum_probs=81.1
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--eeccccccCCCCCCccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LYHDWCESFNTYPRTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~~d~~e~f~~yp~sFDlVh~~~v~ 142 (221)
...+|||+|||+|.++..++.+.- ..+++.+|.+ ++++.+.++ ++.. ++.. ....+++.+||+|.++...
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~--d~~~~~~~~~D~v~~~~~~ 107 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG--EAPIELPGKADAIFIGGSG 107 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec--CchhhcCcCCCEEEECCCc
Confidence 467899999999999999887632 1257888885 577776543 3322 1211 1122356889999998655
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEEc-ChhhHHHHHHHHHhcCCeE
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILRD-DAETIVEVEDLVKSLHWDV 189 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~d-~~~~~~~i~~i~~~l~W~~ 189 (221)
. +...++.++.|+|+|||++++.. ..+..+++.+++++..+..
T Consensus 108 ~----~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 108 G----NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSE 151 (187)
T ss_pred c----CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCc
Confidence 4 34578999999999999999976 3455778888888888864
No 43
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.25 E-value=1.2e-11 Score=110.28 Aligned_cols=115 Identities=14% Similarity=0.230 Sum_probs=81.8
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHH----HcCcc-c-eeccccccCCCCCCccCeeeeccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIY----ERGLF-G-LYHDWCESFNTYPRTYDLLHADHLFS 143 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~----eRGl~-~-~~~d~~e~f~~yp~sFDlVh~~~v~~ 143 (221)
..+|||+|||+|.++..|++++. +|+++|.+ .+++.+. +.|+. . ...|..+ . .++++||+|.|..+|+
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~-~-~~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINS-A-SIQEEYDFILSTVVLM 195 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhc-c-cccCCccEEEEcchhh
Confidence 35899999999999999999874 56888886 4776554 34541 1 1223211 1 2368999999999998
Q ss_pred cccc-cHHHHHHHhhhhccCCeEEEEEc---Ch--------h---hHHHHHHHHHhcCCeEEEe
Q 027609 144 TIKK-SLKAVVAEVDRILRPDGNLILRD---DA--------E---TIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 144 h~~~-d~~~vL~EmdRVLRPGG~~ii~d---~~--------~---~~~~i~~i~~~l~W~~~~~ 192 (221)
|+.. +...++.+|.|+|||||++++-. .. . .-.++.+.+.. |++...
T Consensus 196 ~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 196 FLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 8764 67899999999999999966531 10 1 14667777766 887654
No 44
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.25 E-value=1.2e-11 Score=116.66 Aligned_cols=99 Identities=14% Similarity=0.210 Sum_probs=74.7
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc-Cc-cc---eeccccccCCCCC-CccCeeeeccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER-GL-FG---LYHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR-Gl-~~---~~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
....+|||+|||+|.++..|+++.. .++++|.+ .+++.+.++ +. .. ...|......++| ++||+|.|+.+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~ 112 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWL 112 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhh
Confidence 3466899999999999999998753 56888886 588766543 11 11 2234321123467 89999999999
Q ss_pred cccccc-cHHHHHHHhhhhccCCeEEEEEc
Q 027609 142 FSTIKK-SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 142 ~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
++|+.+ +...+|.|+.|+|||||++++.|
T Consensus 113 l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 113 LMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 999884 36799999999999999999986
No 45
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.25 E-value=1.2e-11 Score=103.67 Aligned_cols=90 Identities=21% Similarity=0.284 Sum_probs=69.7
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCC-CccCeeeecccccccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKKS 148 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~d 148 (221)
..+|||+|||+|.++..|++.... +++++|.+ ++++.+.++++.-...|..+.+++++ ++||+|.|+.+|+|.. |
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~--~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~-d 90 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQV--RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR-N 90 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCC--cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc-C
Confidence 458999999999999999765321 35778876 58888888876434445433344566 8999999999999998 8
Q ss_pred HHHHHHHhhhhccCC
Q 027609 149 LKAVVAEVDRILRPD 163 (221)
Q Consensus 149 ~~~vL~EmdRVLRPG 163 (221)
+..+|.||.|+++++
T Consensus 91 ~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 91 PEEILDEMLRVGRHA 105 (194)
T ss_pred HHHHHHHHHHhCCeE
Confidence 999999999988764
No 46
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.24 E-value=7e-11 Score=103.45 Aligned_cols=129 Identities=19% Similarity=0.168 Sum_probs=88.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCCCccCeeeecccccccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKS 148 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~d 148 (221)
...+|||+|||+|.++.++++.+.. .++++|.+ .+++.+.++.-..-+.+..+ +..-..+||+|.|+.... .
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~~-~~~~~~~fD~Vvani~~~----~ 191 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNVY-LPQGDLKADVIVANILAN----P 191 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEE-EccCCCCcCEEEEcCcHH----H
Confidence 4678999999999999988887653 47888886 48887776621111111000 110012799999974322 3
Q ss_pred HHHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHhcCCeEEEeecCCCeeEEEEEe
Q 027609 149 LKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK 205 (221)
Q Consensus 149 ~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K 205 (221)
...++.++.|+|||||++++++... ..+.+.+.++...++.......+.=..++++|
T Consensus 192 ~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~~~~ 249 (250)
T PRK00517 192 LLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLERGEWVALVGKK 249 (250)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEeCCEEEEEEEe
Confidence 4578899999999999999997543 46677788888889876554444555556665
No 47
>PRK06202 hypothetical protein; Provisional
Probab=99.23 E-value=3.3e-11 Score=103.61 Aligned_cols=101 Identities=12% Similarity=0.184 Sum_probs=72.3
Q ss_pred CCCCCCeEEeecCcchHHHHHHhh----CCCeEEEeccCCCC-CCHHHHHHcCc-cc--e-eccccccCCCCCCccCeee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKD----LKVWVMNVVPIESP-DTLPIIYERGL-FG--L-YHDWCESFNTYPRTYDLLH 137 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~----~~v~vmnv~~~d~~-~~l~~a~eRGl-~~--~-~~d~~e~f~~yp~sFDlVh 137 (221)
...+..+|||+|||+|.++..|++ .+. ..+++++|.+ +|++.+.++.. .+ . ..+ ++.++.-+++||+|.
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~-~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGL-RLEVTAIDPDPRAVAFARANPRRPGVTFRQAV-SDELVAEGERFDVVT 134 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHhccccCCCeEEEEe-cccccccCCCccEEE
Confidence 334567999999999999888864 232 2368999986 69999988732 11 1 122 233432238999999
Q ss_pred eccccccccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 138 ADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 138 ~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
|+.+|+|+.+ +...+|.||.|++| |.+++.|-
T Consensus 135 ~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 135 SNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred ECCeeecCChHHHHHHHHHHHHhcC--eeEEEecc
Confidence 9999999983 24579999999999 56666653
No 48
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.22 E-value=3.4e-12 Score=96.17 Aligned_cols=89 Identities=20% Similarity=0.332 Sum_probs=63.6
Q ss_pred EEeecCcchHHHHHHhhCC--CeEEEeccCCCC-CCHHHHHHcCc-----cce-eccccccCCCCC-CccCeeeeccc-c
Q 027609 74 VMDMRAVYGGFAAALKDLK--VWVMNVVPIESP-DTLPIIYERGL-----FGL-YHDWCESFNTYP-RTYDLLHADHL-F 142 (221)
Q Consensus 74 VLD~GcG~G~faa~L~~~~--v~vmnv~~~d~~-~~l~~a~eRGl-----~~~-~~d~~e~f~~yp-~sFDlVh~~~v-~ 142 (221)
|||+|||+|..+..|++.- ..-..+.++|.+ +|++.+.++.- +.. ..|. +.++ ++ ++||+|.|..+ +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~-~~l~-~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA-RDLP-FSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT-TCHH-HHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCH-hHCc-ccCCCeeEEEEcCCcc
Confidence 7999999999999998762 111367999987 59999988852 112 2342 2233 34 89999999544 8
Q ss_pred ccccc-cHHHHHHHhhhhccCCe
Q 027609 143 STIKK-SLKAVVAEVDRILRPDG 164 (221)
Q Consensus 143 ~h~~~-d~~~vL~EmdRVLRPGG 164 (221)
+|+.+ +...+|.++.|+|||||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 88775 78899999999999998
No 49
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.22 E-value=6.4e-11 Score=106.02 Aligned_cols=113 Identities=20% Similarity=0.163 Sum_probs=79.9
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----ccceeccccccCCCCC-CccCeeeecccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----LFGLYHDWCESFNTYP-RTYDLLHADHLFST 144 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h 144 (221)
..+|||+|||+|.++.+++..+.. +++++|.+ .+++.+.++. +...+.........++ +.||+|+|+.+..
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~~--~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~- 236 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGAA--KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE- 236 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH-
Confidence 478999999999999888887653 57888886 5888777652 2211222112123344 8999999985443
Q ss_pred ccccHHHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHhcCCeEE
Q 027609 145 IKKSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 145 ~~~d~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~l~W~~~ 190 (221)
....++.++.|+|||||+++++.... ..+.+.+.+++. |+..
T Consensus 237 ---~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 237 ---VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVV 279 (288)
T ss_pred ---HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Ccee
Confidence 34578999999999999999997532 356666666665 7764
No 50
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.21 E-value=3.4e-11 Score=100.58 Aligned_cols=99 Identities=15% Similarity=0.251 Sum_probs=75.6
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc----cce-eccccccCCCCC-CccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL----FGL-YHDWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl----~~~-~~d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
...+|||+|||+|.++..++++.....+++.+|.+ .+++.+.++.- +.. ..|..+ ++ ++ ++||+|+++.++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~-~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LP-FEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CC-CCCCcEEEEEEeeee
Confidence 57899999999999999998774321357888875 57777777632 112 233322 22 55 899999999999
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+|.. ++..++.++.++|||||++++.+.
T Consensus 117 ~~~~-~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 117 RNVT-DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCcc-cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8888 899999999999999999998753
No 51
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.21 E-value=2.5e-11 Score=103.91 Aligned_cols=95 Identities=16% Similarity=0.219 Sum_probs=73.5
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCc-ccee-ccccccCCCCC-CccCeeeecccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGL-FGLY-HDWCESFNTYP-RTYDLLHADHLFST 144 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl-~~~~-~d~~e~f~~yp-~sFDlVh~~~v~~h 144 (221)
...+|||+|||+|.++..|.+. +. .+++++|.+ ++++.|.++.- +... .|. +.+++ ++||+|.|..+++|
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~---~~~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSL---FDPFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeec---cCCCCCCCEEEEEECChhhh
Confidence 3678999999999999999876 22 267999987 59999988621 1222 342 23566 99999999999999
Q ss_pred ccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 145 IKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 145 ~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+.. +...++.||.|++ ++++++.+-
T Consensus 118 l~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 118 INPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred CCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 864 6789999999998 578888763
No 52
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.21 E-value=1.1e-10 Score=100.75 Aligned_cols=149 Identities=17% Similarity=0.331 Sum_probs=95.0
Q ss_pred hhhHHHHHhhhhhcc--cCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceec-ccc-c
Q 027609 50 QHWKNVVSKSYLNGM--GINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYH-DWC-E 124 (221)
Q Consensus 50 ~~W~~~v~~~Y~~~L--~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~-d~~-e 124 (221)
..|.++.+ |...| .+....++++||+|||.|.|++.|+.+- -.++.+|.+ ..++.+.+| +-+.-| .|. .
T Consensus 23 ~~~YE~~K--~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~R-l~~~~~V~~~~~ 96 (201)
T PF05401_consen 23 TSWYERRK--YRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARER-LAGLPHVEWIQA 96 (201)
T ss_dssp T-HHHHHH--HHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHH-TTT-SSEEEEES
T ss_pred CCHHHHHH--HHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHh-cCCCCCeEEEEC
Confidence 45666553 44444 3788899999999999999999999883 357888876 489999988 322111 111 1
Q ss_pred cCCC-CC-CccCeeeeccccccccc--cHHHHHHHhhhhccCCeEEEEEcChhh----------HHHHHHHHHhcCCeEE
Q 027609 125 SFNT-YP-RTYDLLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDDAET----------IVEVEDLVKSLHWDVR 190 (221)
Q Consensus 125 ~f~~-yp-~sFDlVh~~~v~~h~~~--d~~~vL~EmdRVLRPGG~~ii~d~~~~----------~~~i~~i~~~l~W~~~ 190 (221)
.++. +| ++|||||++-++..+.+ +...++..+...|+|||.+|+....+. .+.|.+++...-=++.
T Consensus 97 dvp~~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~ 176 (201)
T PF05401_consen 97 DVPEFWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVE 176 (201)
T ss_dssp -TTT---SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEE
T ss_pred cCCCCCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhhee
Confidence 2333 46 99999999999988763 577899999999999999999965432 3455566555544443
Q ss_pred Ee---ecCCCeeEEEEE
Q 027609 191 MI---YTNDNQGMLCVH 204 (221)
Q Consensus 191 ~~---~~~~~e~~l~~~ 204 (221)
-. .....|.-|+++
T Consensus 177 ~~~~~~~~~~~~~~~~~ 193 (201)
T PF05401_consen 177 RVECRGGSPNEDCLLAR 193 (201)
T ss_dssp EEEEE-SSTTSEEEEEE
T ss_pred EEEEcCCCCCCceEeee
Confidence 22 123355566554
No 53
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.20 E-value=9.7e-11 Score=97.82 Aligned_cols=133 Identities=14% Similarity=0.206 Sum_probs=78.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccceeccccccC------CCCC-CccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESF------NTYP-RTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f------~~yp-~sFDlVh~~~v~ 142 (221)
...+|||+|||+|+++..++++......++.+|.+.+.. ..++.-...|..+.. ..++ ++||+|.|+.+.
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~---~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~ 108 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKP---IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAP 108 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccccc---CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCC
Confidence 467899999999999998877632112467777754331 122221223432210 0145 789999986432
Q ss_pred --------ccccc--cHHHHHHHhhhhccCCeEEEEEc-ChhhHHHHHHHHHhcCCeEEEe-e----cCCCeeEEEEEe
Q 027609 143 --------STIKK--SLKAVVAEVDRILRPDGNLILRD-DAETIVEVEDLVKSLHWDVRMI-Y----TNDNQGMLCVHK 205 (221)
Q Consensus 143 --------~h~~~--d~~~vL~EmdRVLRPGG~~ii~d-~~~~~~~i~~i~~~l~W~~~~~-~----~~~~e~~l~~~K 205 (221)
.|... +...+|.++.|+|||||.+++.. .....+++-..++..-|.+.+. + ..+.|++++|..
T Consensus 109 ~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (188)
T TIGR00438 109 NISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAKR 187 (188)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEec
Confidence 22211 34789999999999999999953 2222333333322223444433 2 235799999963
No 54
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.18 E-value=5e-11 Score=106.69 Aligned_cols=103 Identities=15% Similarity=0.263 Sum_probs=72.7
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHH----cCccceecccccc-C-CCCCCccCeeeecc
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYE----RGLFGLYHDWCES-F-NTYPRTYDLLHADH 140 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~e----RGl~~~~~d~~e~-f-~~yp~sFDlVh~~~ 140 (221)
.....++|||+|||+|.++..++++.- ..+++.+|.+.+++.+.+ .|+.+.+.-.+.. | .++| .+|+|.++.
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~ 223 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCR 223 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEh
Confidence 345678999999999999999988731 125677777667766544 3553322111112 2 1344 479999999
Q ss_pred ccccccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 141 LFSTIKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 141 v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+++++.+ ....+|.++.|+|||||.+++.|.
T Consensus 224 ~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9998874 346799999999999999999864
No 55
>PRK06922 hypothetical protein; Provisional
Probab=99.18 E-value=3e-11 Score=119.40 Aligned_cols=100 Identities=13% Similarity=0.257 Sum_probs=75.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----c-ccee-ccccccCCC-CC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----L-FGLY-HDWCESFNT-YP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l-~~~~-~d~~e~f~~-yp-~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|+.+. ...+++++|.+ .|++.+.++. . ...+ .| +..++. |+ ++||+|.++.
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gD-a~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGD-AINLSSSFEKESVDTIVYSS 495 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcc-hHhCccccCCCCEEEEEEch
Confidence 46799999999999998887752 22367999987 5898887762 1 1112 33 233432 55 9999999998
Q ss_pred cccccc------------ccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 141 LFSTIK------------KSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 141 v~~h~~------------~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+++|+. .++..+|.|+.|+|||||.+++.|.
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 888752 2678999999999999999999974
No 56
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.18 E-value=2.6e-11 Score=108.54 Aligned_cols=98 Identities=15% Similarity=0.239 Sum_probs=77.9
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc-----cc----eeccccccCCCCCCccCeeeecc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-----FG----LYHDWCESFNTYPRTYDLLHADH 140 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-----~~----~~~d~~e~f~~yp~sFDlVh~~~ 140 (221)
.++|||+|||.|-++..|+..|. +|+++|.+ +|+++|.+.-- .+ .+---|.........||.|.|+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 58899999999999999999985 56999997 59999988731 11 01011222222345699999999
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+++|+. ||+.++.-+-+.|||||.++|++-.
T Consensus 167 vleHV~-dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 167 VLEHVK-DPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHHh-CHHHHHHHHHHHhCCCCceEeeehh
Confidence 999999 9999999999999999999999753
No 57
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.18 E-value=6.1e-11 Score=100.89 Aligned_cols=119 Identities=15% Similarity=0.110 Sum_probs=84.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCC-CC-CccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNT-YP-RTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~-yp-~sFDlVh~~ 139 (221)
...+|||+|||+|.++..|+++.-. .+++++|.+ ++++.+.++ ++.+ .+ .|..+.++. ++ ++||+|.+.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~-~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD-INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC-ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 5789999999999999999876211 267888886 488777653 3322 22 343133432 65 899999987
Q ss_pred cccccccc--------cHHHHHHHhhhhccCCeEEEEEc-ChhhHHHHHHHHHhcCCeEE
Q 027609 140 HLFSTIKK--------SLKAVVAEVDRILRPDGNLILRD-DAETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 140 ~v~~h~~~--------d~~~vL~EmdRVLRPGG~~ii~d-~~~~~~~i~~i~~~l~W~~~ 190 (221)
.... |.. ....+|.++.|+|||||.|++.. .......+.+.+.+-.|.+.
T Consensus 119 ~~~p-~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 119 FPDP-WPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCC-CCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 5432 210 24689999999999999999975 45567777777777788776
No 58
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.16 E-value=4.7e-11 Score=105.46 Aligned_cols=94 Identities=14% Similarity=0.182 Sum_probs=67.7
Q ss_pred CCCeEEeecCcchHHHHHHhhCC--CeEEEeccCCCC-CCHHHHHHcCc-cc-eeccccccCCCCC-CccCeeeeccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESP-DTLPIIYERGL-FG-LYHDWCESFNTYP-RTYDLLHADHLFS 143 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~--v~vmnv~~~d~~-~~l~~a~eRGl-~~-~~~d~~e~f~~yp-~sFDlVh~~~v~~ 143 (221)
...+|||+|||+|.++..|++.. ....+++++|.+ ++++.|.++.- +. ...|.. .+ ||+ ++||+|.+.. .
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~-~l-p~~~~sfD~I~~~~--~ 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSH-RL-PFADQSLDAIIRIY--A 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecc-cC-CCcCCceeEEEEec--C
Confidence 45789999999999999997752 111257999987 59998887732 11 233432 23 576 8999999753 2
Q ss_pred cccccHHHHHHHhhhhccCCeEEEEEcChh
Q 027609 144 TIKKSLKAVVAEVDRILRPDGNLILRDDAE 173 (221)
Q Consensus 144 h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~ 173 (221)
+ ..+.|+.|+|||||++++....+
T Consensus 161 --~----~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 --P----CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred --C----CCHHHHHhhccCCCEEEEEeCCC
Confidence 2 24689999999999999986543
No 59
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.14 E-value=1.6e-10 Score=97.48 Aligned_cols=99 Identities=20% Similarity=0.295 Sum_probs=74.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----c---ccee-ccccccCCCCC-CccCeeeec
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----L---FGLY-HDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l---~~~~-~d~~e~f~~yp-~sFDlVh~~ 139 (221)
...+|||+|||+|.++..+++......+++.+|.+ .+++.+.++- + +..+ .|.. .+ +++ .+||+|+++
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~-~~~~~~~D~I~~~ 128 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE-AL-PFPDNSFDAVTIA 128 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc-cC-CCCCCCccEEEEe
Confidence 45789999999999999988764212357888876 4777777652 1 1122 2321 12 244 899999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
.+++++. ++..+|.++.++|+|||.+++.+.
T Consensus 129 ~~l~~~~-~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 129 FGLRNVP-DIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred cccccCC-CHHHHHHHHHHhccCCcEEEEEEe
Confidence 9998888 899999999999999999998753
No 60
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.14 E-value=1.1e-10 Score=98.65 Aligned_cols=98 Identities=17% Similarity=0.298 Sum_probs=73.4
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc--cceeccccccCCCC-CCccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL--FGLYHDWCESFNTY-PRTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl--~~~~~d~~e~f~~y-p~sFDlVh~~~v 141 (221)
...+|||+|||+|.++..+++.+. .++.+|.+ .+++.+.++ ++ +.....-.+.++.. +++||+|+|+.+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 467899999999999999988754 36778875 477766654 22 11222111222222 489999999999
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
++|.. ++..+|.++.++|+|||.+++++.
T Consensus 122 l~~~~-~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 122 LEHVP-DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HHhCC-CHHHHHHHHHHhcCCCcEEEEEec
Confidence 99888 899999999999999999999864
No 61
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.10 E-value=7e-10 Score=93.62 Aligned_cols=145 Identities=13% Similarity=0.190 Sum_probs=90.4
Q ss_pred cccchh--hhhhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----C
Q 027609 42 PEDFTA--DYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----G 114 (221)
Q Consensus 42 ~~~f~~--d~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----G 114 (221)
.+.|.. +.-.++..++..-...+ ......+|||+|||+|.++..++..-....+++.+|.+ ++++.+.++ |
T Consensus 12 d~~~~~~~~~~~t~~~~r~~~l~~l--~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g 89 (198)
T PRK00377 12 DEEFERDEEIPMTKEEIRALALSKL--RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG 89 (198)
T ss_pred hHHHccCCCCCCCHHHHHHHHHHHc--CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC
Confidence 344554 33466666654222223 33346789999999999998876541111257888885 577766544 4
Q ss_pred ccc---ee-ccccccCCCCCCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcC-hhhHHHHHHHHHhcCCeE
Q 027609 115 LFG---LY-HDWCESFNTYPRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD-AETIVEVEDLVKSLHWDV 189 (221)
Q Consensus 115 l~~---~~-~d~~e~f~~yp~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~-~~~~~~i~~i~~~l~W~~ 189 (221)
+.. .+ .|..+.++..+..||.|.+... .. ++..++.++.|+|||||.+++... .+.+.++...++...++.
T Consensus 90 ~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~---~~-~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 90 VLNNIVLIKGEAPEILFTINEKFDRIFIGGG---SE-KLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNL 165 (198)
T ss_pred CCCCeEEEEechhhhHhhcCCCCCEEEECCC---cc-cHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCe
Confidence 321 11 2322212223478999998532 23 678999999999999999998533 344667777777777765
Q ss_pred EEe
Q 027609 190 RMI 192 (221)
Q Consensus 190 ~~~ 192 (221)
.+.
T Consensus 166 ~~~ 168 (198)
T PRK00377 166 EIT 168 (198)
T ss_pred EEE
Confidence 543
No 62
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.10 E-value=6.1e-10 Score=104.18 Aligned_cols=130 Identities=12% Similarity=0.085 Sum_probs=86.7
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc---ceeccccccCCCCC-CccCeeeeccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF---GLYHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~---~~~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
..+|||+|||+|.++..|+++.-. ..++.+|.+ .+++.+.+. +.. .+-..++..+..++ .+||+|.|+--
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcC
Confidence 458999999999999999887421 257888887 588877654 211 11111122344455 69999999877
Q ss_pred ccccc--c--cHHHHHHHhhhhccCCeEEEEEc--ChhhHHHHHHHHHhcCCeEEEeecCCCeeEEEEEe
Q 027609 142 FSTIK--K--SLKAVVAEVDRILRPDGNLILRD--DAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK 205 (221)
Q Consensus 142 ~~h~~--~--d~~~vL~EmdRVLRPGG~~ii~d--~~~~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K 205 (221)
|+.-. . ....++.+..|+|||||.+++-- ..++...+++++. .+....++.+=+|+-++|
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~va~~~kf~vl~a~k 373 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIATNNKFVVLKAVK 373 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEEccCCCEEEEEEEe
Confidence 75321 1 34578999999999999998884 3344555555433 344445556677887777
No 63
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.09 E-value=3.2e-10 Score=96.55 Aligned_cols=97 Identities=8% Similarity=0.113 Sum_probs=74.8
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc-------ccee-ccccccCCCCCCccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-------FGLY-HDWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-------~~~~-~d~~e~f~~yp~sFDlVh~~ 139 (221)
.+..+|||+|||+|.++..|++++. .++++|.+ ++++.+.++.- +... .| +...+++||+|.|.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d----~~~~~~~fD~ii~~ 126 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVND----LLSLCGEFDIVVCM 126 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC----hhhCCCCcCEEEEh
Confidence 4578999999999999999998764 46889986 59988887631 1111 22 22234899999999
Q ss_pred cccccccc-cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 140 HLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 140 ~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
.++.|++. ++..++.++.|+++||+++.+....
T Consensus 127 ~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~ 160 (219)
T TIGR02021 127 DVLIHYPASDMAKALGHLASLTKERVIFTFAPKT 160 (219)
T ss_pred hHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 99988864 6889999999999999888876443
No 64
>PRK14967 putative methyltransferase; Provisional
Probab=99.09 E-value=3.2e-09 Score=91.18 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=75.4
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc-ee-ccccccCCCCC-CccCeeeecccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG-LY-HDWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~-~~-~d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
..+|||+|||+|.++..++..+. -+++.+|.+ .+++.+.++ |+.- ++ .|+.+ .++ ++||+|.|+.-+
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~~~fD~Vi~npPy 111 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEFRPFDVVVSNPPY 111 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccCCCeeEEEECCCC
Confidence 56899999999999999988764 257888876 477766553 3311 11 24322 245 899999997433
Q ss_pred ccccc--------------------cHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhcCCeEE
Q 027609 143 STIKK--------------------SLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 143 ~h~~~--------------------d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l~W~~~ 190 (221)
.+-.. ....++.++.|+|||||.+++.... ....++.+.+++-.+++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 180 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAE 180 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeE
Confidence 21110 1456888999999999999985322 134455555666666544
No 65
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.09 E-value=2.6e-10 Score=97.48 Aligned_cols=99 Identities=14% Similarity=0.251 Sum_probs=74.9
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc-ce-eccccccCCCCC-CccCeeeec
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF-GL-YHDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~-~~-~~d~~e~f~~yp-~sFDlVh~~ 139 (221)
.....+|||+|||.|.++..+.+.+. +++.+|.+ ++++.+.++ ++. .. ..+..+ ++..+ .+||+|+|+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~fD~Ii~~ 121 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEE-LAAEHPGQFDVVTCM 121 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHH-hhhhcCCCccEEEEh
Confidence 33567899999999999999988764 46788875 477766654 221 11 122221 22223 899999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
.++.|.. ++..+|.++.|+|+|||.+++.+.
T Consensus 122 ~~l~~~~-~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 122 EMLEHVP-DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hHhhccC-CHHHHHHHHHHHcCCCcEEEEEec
Confidence 9999988 899999999999999999999864
No 66
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.08 E-value=1.1e-09 Score=100.85 Aligned_cols=129 Identities=14% Similarity=0.140 Sum_probs=86.0
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH----cCccceeccccccCCCCCCccCeeeecccccccc
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE----RGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIK 146 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e----RGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~ 146 (221)
.+|||+|||+|.++..++++.-. ..++.+|.+ .+++.+.+ .|+.+.+. ++..+...+++||+|.|+-.||.-.
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCc
Confidence 47999999999999999887421 257888886 47776654 34433222 1223433458999999998887422
Q ss_pred ----ccHHHHHHHhhhhccCCeEEEEEcC--hhhHHHHHHHHHhcCCeEEEeecCCCeeEEEEEec
Q 027609 147 ----KSLKAVVAEVDRILRPDGNLILRDD--AETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKT 206 (221)
Q Consensus 147 ----~d~~~vL~EmdRVLRPGG~~ii~d~--~~~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K~ 206 (221)
+..+.++.++.|.|||||.++|-.. .++-+.+++.+... + ..-.+++=+|+-|+|.
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~--~--~la~~~~f~v~~a~~~ 337 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH--E--VLAQTGRFKVYRAIMT 337 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe--E--EEEeCCCEEEEEEEcc
Confidence 1578999999999999999987643 33444555544321 2 2224456778877763
No 67
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.07 E-value=1.7e-10 Score=99.04 Aligned_cols=116 Identities=16% Similarity=0.235 Sum_probs=78.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-----CHHHHHHcCcc--ceeccccccCCCCCCccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-----TLPIIYERGLF--GLYHDWCESFNTYPRTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-----~l~~a~eRGl~--~~~~d~~e~f~~yp~sFDlVh~~~v~ 142 (221)
+..++||+|||.|.-|.+|+++|.. |+.+|.+. ..++|.++++. ....|..+ + .+++.||+|.|.-+|
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~---VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~-~-~~~~~yD~I~st~v~ 104 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFD---VTAVDISPVALEKLQRLAEEEGLDIRTRVADLND-F-DFPEEYDFIVSTVVF 104 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-E---EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCC-B-S-TTTEEEEEEESSG
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHhhcCceeEEEEecchh-c-cccCCcCEEEEEEEe
Confidence 4568999999999999999999853 57777642 44567777774 12334322 2 246899999999899
Q ss_pred ccccc-cHHHHHHHhhhhccCCeEEEEEcC-----------hhh---HHHHHHHHHhcCCeEEEe
Q 027609 143 STIKK-SLKAVVAEVDRILRPDGNLILRDD-----------AET---IVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 143 ~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~-----------~~~---~~~i~~i~~~l~W~~~~~ 192 (221)
.|++. ....++..|..-|+|||++++-.. .++ -.++...+. .|++..+
T Consensus 105 ~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y 167 (192)
T PF03848_consen 105 MFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKY 167 (192)
T ss_dssp GGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEE
T ss_pred ccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEE
Confidence 98886 667899999999999999988421 122 245555555 5998654
No 68
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.07 E-value=6e-10 Score=84.76 Aligned_cols=93 Identities=20% Similarity=0.152 Sum_probs=65.3
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH----cCccce--e-ccccccCCCC-CCccCeeeeccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE----RGLFGL--Y-HDWCESFNTY-PRTYDLLHADHL 141 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e----RGl~~~--~-~d~~e~f~~y-p~sFDlVh~~~v 141 (221)
..+|||+|||+|.++..++++.-. .+++++|.+ .+++.+.+ .++... + .|.. ...++ +.+||.|.+...
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAP-EALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccc-ccChhhcCCCCEEEECCc
Confidence 569999999999999999886211 367888886 47766543 233221 1 2211 11223 379999999765
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.. ....++.++.|+|||||++++.
T Consensus 98 ~~----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 98 GG----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred ch----hHHHHHHHHHHHcCCCCEEEEE
Confidence 54 3458999999999999999986
No 69
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.06 E-value=9.8e-10 Score=94.09 Aligned_cols=117 Identities=20% Similarity=0.332 Sum_probs=81.0
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--eeccccccCCCCC-CccCeeeecccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LYHDWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~~d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
..+|||+|||+|.++..+++.... .+++++|.+ .+++.+.++ |+.. .++ +..+.+++ ++||+|.|+--+
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~--~d~~~~~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQ--SDWFEPLPGGKFDLIVSNPPY 164 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEE--CchhccCcCCceeEEEECCCC
Confidence 458999999999999999886211 257888875 477666543 4422 222 12233465 899999985332
Q ss_pred cc------ccc-------------------cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE
Q 027609 143 ST------IKK-------------------SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 143 ~h------~~~-------------------d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~ 190 (221)
.. +.. ....++.++.|+|+|||.+++.........+++++++.+++..
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 21 110 1246789999999999999998777667888888888888643
No 70
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.05 E-value=3.8e-10 Score=95.22 Aligned_cols=116 Identities=13% Similarity=0.156 Sum_probs=74.7
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--eec-cccccCC--CCC-CccCeeeec
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LYH-DWCESFN--TYP-RTYDLLHAD 139 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~~-d~~e~f~--~yp-~sFDlVh~~ 139 (221)
-..|||+|||+|.++..|+.+.-. .+++++|.+ ++++.+.++ |+.+ +++ |. ..++ .++ ++||.|+++
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~-~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDA-NELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCH-HHHHHhhCCCCceeEEEEE
Confidence 468999999999999999887322 367888886 477665543 4432 222 22 1122 146 799999887
Q ss_pred ccccccccc--------HHHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHh-cCCeE
Q 027609 140 HLFSTIKKS--------LKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKS-LHWDV 189 (221)
Q Consensus 140 ~v~~h~~~d--------~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~-l~W~~ 189 (221)
.... |++. ...+|.++.|+|||||.+++..... ....+...+.. -+|+.
T Consensus 95 ~pdp-w~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 95 FPDP-WPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CCCc-CCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 4322 2211 1579999999999999998875544 45555444433 33554
No 71
>PRK14968 putative methyltransferase; Provisional
Probab=99.05 E-value=1.8e-09 Score=88.23 Aligned_cols=116 Identities=16% Similarity=0.221 Sum_probs=80.9
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc-----ceeccccccCCCCC-CccCeeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF-----GLYHDWCESFNTYP-RTYDLLHA 138 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~-----~~~~d~~e~f~~yp-~sFDlVh~ 138 (221)
+..+|||+|||.|.++..|++++. +++++|.+ ++++.+.++ ++. -..+|+.+ +++ .+||+|.+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~d~vi~ 96 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE---PFRGDKFDVILF 96 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc---cccccCceEEEE
Confidence 467899999999999999998853 57888875 577766443 221 12345433 445 68999988
Q ss_pred cccccccc--------------------ccHHHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHhcCCeEEE
Q 027609 139 DHLFSTIK--------------------KSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 139 ~~v~~h~~--------------------~d~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~l~W~~~~ 191 (221)
+.-+.+.. .....++.++.|+|||||.+++-.... ..+.+.+.+....|+...
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEV 170 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeee
Confidence 75443210 025678999999999999988764432 356778888888887653
No 72
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.05 E-value=6.9e-10 Score=94.04 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=70.3
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----CccceeccccccCCCCCCccCeeeecccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFGLYHDWCESFNTYPRTYDLLHADHLFST 144 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h 144 (221)
...+|||+|||+|.++..|++++. .++++|.+ ++++.+.++ |+...++-....++..+++||+|.|..+++|
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 467999999999999999998864 36888886 588888775 2211111001123323489999999999998
Q ss_pred ccc-cHHHHHHHhhhhccCCeEEEEEc
Q 027609 145 IKK-SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 145 ~~~-d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
++. +...++.++.|++++|+.+.+..
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEEECC
Confidence 774 66789999999887666655543
No 73
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.05 E-value=1.9e-10 Score=100.47 Aligned_cols=99 Identities=15% Similarity=0.197 Sum_probs=75.3
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----ccc---eeccccccCCCCC-CccCeeeeccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----LFG---LYHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l~~---~~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
=-.||.+|||+|.--..+-..+.- +|+.+|.+ +|.+++..+- -.. .++.-.|.++..+ .|||.|.|..|
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~--svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPIN--SVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred ccceEEecccCCCCcccccCCCCc--eEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 345899999999765555444322 46888875 5777654442 111 4455578887777 99999999999
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+.... |+..+|.|+.|||||||.+++-++.
T Consensus 155 LCSve-~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 155 LCSVE-DPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EeccC-CHHHHHHHHHHhcCCCcEEEEEecc
Confidence 98777 8999999999999999999999874
No 74
>PRK04266 fibrillarin; Provisional
Probab=99.04 E-value=3.9e-09 Score=92.16 Aligned_cols=132 Identities=14% Similarity=0.144 Sum_probs=78.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHH----HHcC-ccceeccccccC--CCCCCccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPII----YERG-LFGLYHDWCESF--NTYPRTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a----~eRG-l~~~~~d~~e~f--~~yp~sFDlVh~~~v 141 (221)
...+|||+|||+|.++..|++.-- ...|.++|.+ .|++.+ .++. +.....|..++. ..++.+||+|.+...
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~ 150 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVA 150 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECCC
Confidence 357899999999999999988621 1257888886 466633 3331 222334533211 123577999876522
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEE------cCh----hhHHHHHHHHHhcCCeEEEe-ec---CCCeeEEEEEe
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILR------DDA----ETIVEVEDLVKSLHWDVRMI-YT---NDNQGMLCVHK 205 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~------d~~----~~~~~i~~i~~~l~W~~~~~-~~---~~~e~~l~~~K 205 (221)
. +.....+|.|+.|+|||||.+++. |.. ...++..+.+.+-..+..-. +. ..+.-.++++|
T Consensus 151 ~---p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~~~ 225 (226)
T PRK04266 151 Q---PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVARK 225 (226)
T ss_pred C---hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEEEc
Confidence 1 212345689999999999999993 321 11223345566666665422 21 22456666665
No 75
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.04 E-value=5.2e-11 Score=105.33 Aligned_cols=122 Identities=19% Similarity=0.278 Sum_probs=94.0
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccce-eccccccCCC-C-CCccCeeeeccc
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGL-YHDWCESFNT-Y-PRTYDLLHADHL 141 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~-~~d~~e~f~~-y-p~sFDlVh~~~v 141 (221)
.+.+.++++||+|||+|-++-.|.++-. .++++|.| +|++.|.++|+-.. ++.=...|.. - ++-||||.+..|
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH
Confidence 5567799999999999999999987632 47999998 69999999998542 2211122543 3 499999999999
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcCh----h-h-----------HHHHHHHHHhcCCeEEE
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDDA----E-T-----------IVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~----~-~-----------~~~i~~i~~~l~W~~~~ 191 (221)
|..+- +.+.++.=..+.|.|||.|++|-.. . + -..+...+.+-..++..
T Consensus 198 l~YlG-~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~ 262 (287)
T COG4976 198 LPYLG-ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIA 262 (287)
T ss_pred HHhhc-chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEE
Confidence 99777 8999999999999999999999211 0 0 24567777777777653
No 76
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=2.5e-09 Score=97.38 Aligned_cols=119 Identities=18% Similarity=0.255 Sum_probs=84.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCcccee----ccccccCCCCC--CccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLY----HDWCESFNTYP--RTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~----~d~~e~f~~yp--~sFDlVh~~~v~ 142 (221)
+.++|||+|||+|-++-+.++-|+. .++++|.. ..++++++.-..+-+ +.-+-..+..+ +.||+|.|+ .+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVAN-IL 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVAN-IL 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEeh-hh
Confidence 5899999999999999999888875 36888884 477777776322211 11111122355 599999998 34
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHhcCCeEEEeec
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVRMIYT 194 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~l~W~~~~~~~ 194 (221)
.+.. ..+.-++.|.|||||++|+|---. ..+.+.+.+.+-.|.+.....
T Consensus 239 A~vl---~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 239 AEVL---VELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred HHHH---HHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEe
Confidence 4333 577788999999999999996432 256677777777888765433
No 77
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.01 E-value=5.1e-09 Score=91.28 Aligned_cols=132 Identities=18% Similarity=0.288 Sum_probs=90.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc---Cccc---ee-ccccccCCCCC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER---GLFG---LY-HDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR---Gl~~---~~-~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|+...- ..+++++|.+ .+++.+.++ +... .+ .|+ +.+++ ++||+|.|+-
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~---~~~~~~~~fD~Iv~np 183 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW---FEPLPGGRFDLIVSNP 183 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc---cCcCCCCceeEEEECC
Confidence 456899999999999999987631 1257888886 588877765 2211 22 243 33444 8999999852
Q ss_pred ccc--------------ccc-----------ccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE-E-ee
Q 027609 141 LFS--------------TIK-----------KSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR-M-IY 193 (221)
Q Consensus 141 v~~--------------h~~-----------~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~-~-~~ 193 (221)
-+. |-+ +....++.++.++|+|||++++--.....+.+..++.+..+... . .|
T Consensus 184 Py~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d 263 (275)
T PRK09328 184 PYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKD 263 (275)
T ss_pred CcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecC
Confidence 111 000 03467888999999999999997665566778888887777532 2 34
Q ss_pred cCCCeeEEEEEe
Q 027609 194 TNDNQGMLCVHK 205 (221)
Q Consensus 194 ~~~~e~~l~~~K 205 (221)
-.+.+++++++|
T Consensus 264 ~~~~~r~~~~~~ 275 (275)
T PRK09328 264 LAGRDRVVLGRR 275 (275)
T ss_pred CCCCceEEEEEC
Confidence 557888988865
No 78
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.01 E-value=1.4e-09 Score=99.24 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=74.5
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC--CHHHHHHcCccc---eecc---ccccCCCCCCccCeee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD--TLPIIYERGLFG---LYHD---WCESFNTYPRTYDLLH 137 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~--~l~~a~eRGl~~---~~~d---~~e~f~~yp~sFDlVh 137 (221)
|..-+.++|||||||.|.++-.++.+|+. .|+++|.+. .+++..-+-+.| .++- --|.++. .++||+|.
T Consensus 111 l~~L~gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF 187 (315)
T PF08003_consen 111 LPDLKGKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVF 187 (315)
T ss_pred hCCcCCCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEE
Confidence 44556899999999999999999999875 367777642 344322222332 1111 1233443 59999999
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
|-.||=|.. +|...|.++...|||||-+|+-+
T Consensus 188 ~MGVLYHrr-~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 188 SMGVLYHRR-SPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred EeeehhccC-CHHHHHHHHHHhhCCCCEEEEEE
Confidence 999998888 99999999999999999999875
No 79
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.01 E-value=1.1e-09 Score=94.56 Aligned_cols=96 Identities=15% Similarity=0.058 Sum_probs=69.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHH-HHcCccc------------------eeccccccCCCC
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPII-YERGLFG------------------LYHDWCESFNTY 129 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a-~eRGl~~------------------~~~d~~e~f~~y 129 (221)
...+|||+|||.|..+.+|+++|- +|+++|.+ ..++.+ .+.|+.. .+.|..+ ++..
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~~ 109 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA-LTAA 109 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCC-CCcc
Confidence 357999999999999999999984 46888886 466653 4444421 2233211 1211
Q ss_pred C-CccCeeeeccccccccc-cHHHHHHHhhhhccCCeEEEEE
Q 027609 130 P-RTYDLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 130 p-~sFDlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
. .+||+|....+|+|++. ....++..|.|+|||||++++-
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 2 57999999999999876 5678999999999999974443
No 80
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.00 E-value=4.2e-09 Score=93.96 Aligned_cols=130 Identities=15% Similarity=0.204 Sum_probs=92.2
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---e-eccccccCCCCC-CccCeeeec--
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---L-YHDWCESFNTYP-RTYDLLHAD-- 139 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~-~~d~~e~f~~yp-~sFDlVh~~-- 139 (221)
.+|||+|||+|.++..|+...- ..+++++|.+ ++++++.++ |+.+ . ..|+.+ +++ ..||+|.|+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~---~~~~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE---PLAGQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc---cCcCCCccEEEECCC
Confidence 5899999999999999988631 1257888886 488777664 3321 2 245544 345 589999986
Q ss_pred -----------cccccccc-----------cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHH-hcCCeE-E-Eeec
Q 027609 140 -----------HLFSTIKK-----------SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVK-SLHWDV-R-MIYT 194 (221)
Q Consensus 140 -----------~v~~h~~~-----------d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~-~l~W~~-~-~~~~ 194 (221)
.++.|.+. ....++.+..++|+|||++++--.......+.+++. ...|.. . ..|-
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D~ 271 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRDL 271 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecCC
Confidence 12222221 356789999999999999999888777788888877 466753 2 3455
Q ss_pred CCCeeEEEEEe
Q 027609 195 NDNQGMLCVHK 205 (221)
Q Consensus 195 ~~~e~~l~~~K 205 (221)
.+.++++++++
T Consensus 272 ~g~~R~~~~~~ 282 (284)
T TIGR00536 272 NGKERVVLGFY 282 (284)
T ss_pred CCCceEEEEEe
Confidence 67899998875
No 81
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.00 E-value=1.2e-09 Score=102.54 Aligned_cols=118 Identities=17% Similarity=0.110 Sum_probs=76.7
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHH----HHHHcCccce---eccccccCCCCC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLP----IIYERGLFGL---YHDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~----~a~eRGl~~~---~~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
....+||+|||+|.++..|+.+.-. .+++++|.+ .+++ .+.++|+.++ ..|.-+-+..+| ++||.|+++.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~-~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPN-KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCC-CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 4568999999999999999987422 367888875 3544 4445566442 234322233466 9999999863
Q ss_pred cccccccc------HHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhc-CCeE
Q 027609 141 LFSTIKKS------LKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSL-HWDV 189 (221)
Q Consensus 141 v~~h~~~d------~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l-~W~~ 189 (221)
.. .|+.. ...+|.|+.|+|||||.+.++++. ++.+.+...+... +++.
T Consensus 201 Pd-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 201 PV-PWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred CC-CccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 22 23221 168999999999999999887554 4455544444333 4443
No 82
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.98 E-value=4.3e-10 Score=99.70 Aligned_cols=114 Identities=18% Similarity=0.132 Sum_probs=78.9
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccc--------cccCCCCCCccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDW--------CESFNTYPRTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~--------~e~f~~yp~sFDlVh~~~ 140 (221)
..|.++|+|||+|.-+..+++.. =+|+++|.+ .||+++... ....+++- .+.|.-=++|.|||.|.+
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~-~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKH-PPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcC-CCcccccCCccccccccccccCCCcceeeehhhh
Confidence 35589999999994444455542 267899987 599988766 44444321 111221269999999999
Q ss_pred ccccccccHHHHHHHhhhhccCCe-EEE---EEcChhhHHHHHHHHHhcCCeE
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDG-NLI---LRDDAETIVEVEDLVKSLHWDV 189 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG-~~i---i~d~~~~~~~i~~i~~~l~W~~ 189 (221)
|+| |= |.+.++.++.|||||.| .+. ..|......++..++.+++|..
T Consensus 109 a~H-WF-dle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~~ 159 (261)
T KOG3010|consen 109 AVH-WF-DLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDST 159 (261)
T ss_pred hHH-hh-chHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhcc
Confidence 997 77 78999999999999877 332 2343334567777778888864
No 83
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.98 E-value=4.4e-09 Score=94.29 Aligned_cols=121 Identities=20% Similarity=0.268 Sum_probs=81.4
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---ee-ccccccCCCCC-CccCeeeecc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LY-HDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~-~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
..+|||+|||+|.++..|+++.- ..+++++|.+ .+++.+.++ |+.. .+ .|+ +.+++ ++||+|.|+-
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~---~~~~~~~~fD~Iv~NP 197 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL---FAALPGRKYDLIVSNP 197 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hhccCCCCccEEEECC
Confidence 46899999999999999988631 1257888986 588777665 5422 22 343 23455 6899999861
Q ss_pred ------cc-------ccccc-----------cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEeecCC
Q 027609 141 ------LF-------STIKK-----------SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTND 196 (221)
Q Consensus 141 ------v~-------~h~~~-----------d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~~~~~ 196 (221)
.+ .|.+. ....++.++.++|+|||++++--.... ..+.+++....|.-.-.++..
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~~~~ 276 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFENGG 276 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeecCCC
Confidence 11 11110 125678999999999999998766544 688888887766554444433
No 84
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.97 E-value=1e-09 Score=99.13 Aligned_cols=98 Identities=21% Similarity=0.385 Sum_probs=76.7
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHH----HHHHcCccc----eeccccccCCCCCCccCe
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLP----IIYERGLFG----LYHDWCESFNTYPRTYDL 135 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~----~a~eRGl~~----~~~d~~e~f~~yp~sFDl 135 (221)
+.-..+.+|||+|||-|+++..++++ +|. |++++.| ++.+ .+.++|+.. .++|| ..++..||-
T Consensus 68 l~L~~G~~lLDiGCGWG~l~~~aA~~y~v~---V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~----rd~~e~fDr 140 (283)
T COG2230 68 LGLKPGMTLLDIGCGWGGLAIYAAEEYGVT---VVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY----RDFEEPFDR 140 (283)
T ss_pred cCCCCCCEEEEeCCChhHHHHHHHHHcCCE---EEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc----cccccccce
Confidence 33344899999999999999999987 775 4777765 3554 456678763 34554 235566999
Q ss_pred eeeccccccccc-cHHHHHHHhhhhccCCeEEEEEc
Q 027609 136 LHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 136 Vh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
|.+-..|+|.-. +...++.-++++|+|||.+++-+
T Consensus 141 IvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 141 IVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred eeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 999999999875 79999999999999999998873
No 85
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.95 E-value=1.4e-09 Score=94.24 Aligned_cols=116 Identities=14% Similarity=0.082 Sum_probs=80.2
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHH-HHHcCccce------------------eccccccCCCCC
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPI-IYERGLFGL------------------YHDWCESFNTYP 130 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~-a~eRGl~~~------------------~~d~~e~f~~yp 130 (221)
..+|||+|||.|..+.+|+++|. +|+++|.+ ..++. +.++|+... +.|..+ +.+.+
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~-l~~~~ 113 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFA-LTAAD 113 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccC-CCccc
Confidence 46999999999999999999985 46888986 46664 456666321 222211 22223
Q ss_pred -CccCeeeeccccccccc-cHHHHHHHhhhhccCCeEEEE-E----cC----hh---hHHHHHHHHHhcCCeEEE
Q 027609 131 -RTYDLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLIL-R----DD----AE---TIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 131 -~sFDlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii-~----d~----~~---~~~~i~~i~~~l~W~~~~ 191 (221)
.+||+|....+|+|++. ....++..|.++|||||++++ . +. .+ ..++|.+++. -+|++..
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~-~~~~i~~ 187 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYA-GCFEIEL 187 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhc-CCceEEE
Confidence 68999999999999876 668999999999999996443 2 11 11 1456666553 3487754
No 86
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.93 E-value=9.5e-09 Score=85.02 Aligned_cols=96 Identities=23% Similarity=0.330 Sum_probs=65.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH----cCccc--e-eccccccCCCCC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE----RGLFG--L-YHDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e----RGl~~--~-~~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|+.+.... .++.+|.+ ++++.+.+ .++.. + .+|+. ...+ ..||+|.|+-
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~-~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~---~~~~~~~fD~Iv~NP 106 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDA-KVTAVDINPDALELAKRNAERNGLENVEVVQSDLF---EALPDGKFDLIVSNP 106 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCE-EEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTT---TTCCTTCEEEEEE--
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCC-EEEEEcCCHHHHHHHHHHHHhcCcccccccccccc---ccccccceeEEEEcc
Confidence 47789999999999999999985432 47788875 46666655 33332 2 33543 3445 9999999984
Q ss_pred ccccccc----cHHHHHHHhhhhccCCeEEEEE
Q 027609 141 LFSTIKK----SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 141 v~~h~~~----d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
=++.-.. -...++.+..+.|||||.+++-
T Consensus 107 P~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 107 PFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp -SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 3321111 3578899999999999988443
No 87
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.93 E-value=2.1e-09 Score=91.60 Aligned_cols=94 Identities=18% Similarity=0.170 Sum_probs=63.5
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---ee-ccccccCCCCCCccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LY-HDWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~-~d~~e~f~~yp~sFDlVh~~ 139 (221)
....+|||+|||+|.+++.|++.--..-.++++|.+ ++++.+.++ |+.+ .+ .|..+.++ ...+||+|++.
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii~~ 149 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-KHAPFDAIIVT 149 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-cCCCccEEEEc
Confidence 346789999999999998887641001146788875 577666543 4322 22 34333221 12799999999
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
..+.|++ .|+.|+|+|||.+++-.
T Consensus 150 ~~~~~~~-------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 150 AAASTIP-------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCcchhh-------HHHHHhcCcCcEEEEEE
Confidence 8877655 37789999999999864
No 88
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.91 E-value=3.6e-09 Score=75.01 Aligned_cols=94 Identities=22% Similarity=0.322 Sum_probs=66.0
Q ss_pred eEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHH---HcCc---cceec-cccccCCCC-CCccCeeeeccccc
Q 027609 73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIY---ERGL---FGLYH-DWCESFNTY-PRTYDLLHADHLFS 143 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~---eRGl---~~~~~-d~~e~f~~y-p~sFDlVh~~~v~~ 143 (221)
+|+|+|||.|.++..+++.+ ..++..+|.+ +.++.+. +.+. +..++ |..+ +... +.+||+|.++.+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEE-LPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhh-hccccCCceEEEEEcccee
Confidence 48999999999999998733 2256777765 3555444 1111 11222 3222 2222 38999999999998
Q ss_pred cccccHHHHHHHhhhhccCCeEEEEE
Q 027609 144 TIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 144 h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
++..+...++..+.+.|||||++++.
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 73338899999999999999999987
No 89
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.91 E-value=6.1e-09 Score=94.58 Aligned_cols=127 Identities=22% Similarity=0.211 Sum_probs=82.4
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----CccceeccccccCCCCC-CccCeeeecccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFGLYHDWCESFNTYP-RTYDLLHADHLFST 144 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h 144 (221)
..+|||+|||+|-+|-+-++.|+. .|+++|.. ..++.+.+. |+...+. .. .....+ ..||+|.|+-+..
T Consensus 162 g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~~~~~~-v~-~~~~~~~~~~dlvvANI~~~- 236 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGVEDRIE-VS-LSEDLVEGKFDLVVANILAD- 236 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-TTCEE-ES-CTSCTCCS-EEEEEEES-HH-
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCCCeeEE-EE-EecccccccCCEEEECCCHH-
Confidence 579999999999888777777764 36777774 356655554 3322111 01 112344 9999999984332
Q ss_pred ccccHHHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHhcCCeEEEeecCCCeeEEEEEec
Q 027609 145 IKKSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKT 206 (221)
Q Consensus 145 ~~~d~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K~ 206 (221)
-....+-++.+.|+|||++|+|--.. ..+.+.+.++. .|+......++.=.-|+++|+
T Consensus 237 ---vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 237 ---VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREEGEWVALVFKKK 295 (295)
T ss_dssp ---HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEETTEEEEEEEE-
T ss_pred ---HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEECCEEEEEEEeC
Confidence 23567778999999999999995432 35667777776 888765555555566777764
No 90
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.90 E-value=3.1e-09 Score=91.16 Aligned_cols=92 Identities=17% Similarity=0.122 Sum_probs=62.3
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCCC-C-CccCeeee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNTY-P-RTYDLLHA 138 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~y-p-~sFDlVh~ 138 (221)
....+|||+|||+|.+++.|++.......++++|.+ ++++.+.++ |+.. +. .| .+..+ + ..||+|++
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd---~~~~~~~~~~fD~I~~ 151 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD---GTLGYEENAPYDRIYV 151 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC---cccCCCcCCCcCEEEE
Confidence 347899999999999998887652111246778875 577777665 3322 22 23 22233 4 89999999
Q ss_pred ccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 139 DHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
...+.+++ .++.+.|||||.+++--
T Consensus 152 ~~~~~~~~-------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 152 TAAGPDIP-------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcccch-------HHHHHhhCCCcEEEEEE
Confidence 87665443 35567899999999853
No 91
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.88 E-value=2.8e-09 Score=96.04 Aligned_cols=99 Identities=14% Similarity=0.150 Sum_probs=70.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC---ccc-----eeccccccCCCCCCc-----cCe
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG---LFG-----LYHDWCESFNTYPRT-----YDL 135 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG---l~~-----~~~d~~e~f~~yp~s-----FDl 135 (221)
...+|||+|||+|.++..|++......+++++|.+ +||+.+.++- .++ +..|..+.+ +++.. ..+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~-~~~~~~~~~~~~~ 141 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL-ALPPEPAAGRRLG 141 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh-hhhcccccCCeEE
Confidence 35689999999999999998873212367999997 5998887761 122 334543322 23322 334
Q ss_pred eeeccccccccc-cHHHHHHHhhhhccCCeEEEEE
Q 027609 136 LHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 136 Vh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
+.+...+.++.. +...+|.++.++|+|||.+++.
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 555567777664 6778999999999999999986
No 92
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.87 E-value=2.9e-09 Score=93.54 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=100.0
Q ss_pred ccc-CCCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccc------eeccccccCCCCC-Cc
Q 027609 63 GMG-INWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFG------LYHDWCESFNTYP-RT 132 (221)
Q Consensus 63 ~L~-i~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~------~~~d~~e~f~~yp-~s 132 (221)
++. |.....++|.|+|||+|.-++.|+.| +.- .++++|.| +|++.|.+| ++. -+++|| | ..
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A--~i~GiDsS~~Mla~Aa~r-lp~~~f~~aDl~~w~------p~~~ 92 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPDA--VITGIDSSPAMLAKAAQR-LPDATFEEADLRTWK------PEQP 92 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhCCCC--eEeeccCCHHHHHHHHHh-CCCCceecccHhhcC------CCCc
Confidence 444 66677999999999999999999998 432 37999997 699999999 443 233443 5 89
Q ss_pred cCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChh----hHHHHHHHHHhcCCeEEEee---------------
Q 027609 133 YDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE----TIVEVEDLVKSLHWDVRMIY--------------- 193 (221)
Q Consensus 133 FDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~----~~~~i~~i~~~l~W~~~~~~--------------- 193 (221)
+||+.++.+|+-++ |-..+|.-.---|.|||++.+.=++. .-..|.+.++..-|...+.+
T Consensus 93 ~dllfaNAvlqWlp-dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy 171 (257)
T COG4106 93 TDLLFANAVLQWLP-DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYY 171 (257)
T ss_pred cchhhhhhhhhhcc-ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHH
Confidence 99999999999767 66678888888899999999983321 23445666665556543221
Q ss_pred ---cCCCeeEEEEEecccCC
Q 027609 194 ---TNDNQGMLCVHKTYWRP 210 (221)
Q Consensus 194 ---~~~~e~~l~~~K~~w~~ 210 (221)
.....+|=|+.+.|-.+
T Consensus 172 ~lLa~~~~rvDiW~T~Y~h~ 191 (257)
T COG4106 172 ELLAPLACRVDIWHTTYYHQ 191 (257)
T ss_pred HHhCcccceeeeeeeecccc
Confidence 12356777777777665
No 93
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.85 E-value=5.9e-09 Score=89.03 Aligned_cols=93 Identities=20% Similarity=0.134 Sum_probs=62.3
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCCCCCccCeeeecc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNTYPRTYDLLHADH 140 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~yp~sFDlVh~~~ 140 (221)
....+|||+|||+|.+++.|++..-....|+++|.+ ++++.+.++ |+.+ .+ .|..+.+. -...||+|+++.
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~-~~~~fD~Ii~~~ 154 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE-PLAPYDRIYVTA 154 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc-ccCCCCEEEEcC
Confidence 346799999999999999998763221246777775 577766554 4422 22 34322111 127899999886
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
...+++ .++.+.|+|||++++.
T Consensus 155 ~~~~~~-------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 155 AGPKIP-------EALIDQLKEGGILVMP 176 (215)
T ss_pred Cccccc-------HHHHHhcCcCcEEEEE
Confidence 655443 4577899999999985
No 94
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.84 E-value=3.1e-08 Score=93.99 Aligned_cols=135 Identities=10% Similarity=0.098 Sum_probs=91.1
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc-cce-eccccccCCCCCCccCeeeeccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL-FGL-YHDWCESFNTYPRTYDLLHADHLFS 143 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl-~~~-~~d~~e~f~~yp~sFDlVh~~~v~~ 143 (221)
..+|||+|||+|.++..|+.+.. ..+++++|.+ .+++.+.++ |. +.. ..|+.+...+-..+||+|.|+-=..
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 34899999999999999876421 1257888886 588877765 22 112 2354332111126899999963221
Q ss_pred c-----c--------c--------c---cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE--EeecCCC
Q 027609 144 T-----I--------K--------K---SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR--MIYTNDN 197 (221)
Q Consensus 144 h-----~--------~--------~---d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~--~~~~~~~ 197 (221)
. . + + ....++.+..+.|+|||++++--..+..+.+++++.+..|... ..|-.+.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~ 410 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAGL 410 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCCCC
Confidence 0 0 0 0 1336667778899999999987666778899999998888653 4466778
Q ss_pred eeEEEEEec
Q 027609 198 QGMLCVHKT 206 (221)
Q Consensus 198 e~~l~~~K~ 206 (221)
++++++++.
T Consensus 411 dR~v~~~~~ 419 (423)
T PRK14966 411 DRVTLGKYM 419 (423)
T ss_pred cEEEEEEEh
Confidence 999998763
No 95
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.84 E-value=2.1e-08 Score=91.07 Aligned_cols=128 Identities=20% Similarity=0.319 Sum_probs=82.2
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---ee-ccccccCCCCC-CccCeeeeccc
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LY-HDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~-~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
.+|||+|||+|.++.+|+.+.- ..+++++|.+ .+++.+.++ |+.. .+ .|+.+ ..| ++||+|.|+-=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~---~l~~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA---ALPGRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh---hCCCCCccEEEECCC
Confidence 6899999999999999987621 1357888986 578776655 4422 22 24322 345 78999998610
Q ss_pred -------------cccccc-----------cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEeecCCC
Q 027609 142 -------------FSTIKK-----------SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTNDN 197 (221)
Q Consensus 142 -------------~~h~~~-----------d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~~~~~~ 197 (221)
+.|.+. ....++.++.++|+|||.+++--... ...+.+++....+.- ...+...
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~~~~-~~~~~~~ 288 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVPFTW-LEFENGG 288 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCCCEE-EEecCCC
Confidence 111110 13578899999999999999965443 445777776654322 2223445
Q ss_pred eeEEEEEe
Q 027609 198 QGMLCVHK 205 (221)
Q Consensus 198 e~~l~~~K 205 (221)
+.++++.+
T Consensus 289 ~~~~~~~~ 296 (307)
T PRK11805 289 DGVFLLTR 296 (307)
T ss_pred ceEEEEEH
Confidence 66666554
No 96
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.84 E-value=3.9e-09 Score=91.08 Aligned_cols=101 Identities=19% Similarity=0.287 Sum_probs=73.8
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccc-eeccccccCCCCCCccCeeeecccccc
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNTYPRTYDLLHADHLFST 144 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~-~~~d~~e~f~~yp~sFDlVh~~~v~~h 144 (221)
.++...++|+|+|+|.|.++.+++++--. +.++-.|.+..++.+.+..-+. +-+| -|.++|. +|++...+++|+
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp~v~~~~~~~~rv~~~~gd---~f~~~P~-~D~~~l~~vLh~ 170 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPN-LRATVFDLPEVIEQAKEADRVEFVPGD---FFDPLPV-ADVYLLRHVLHD 170 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTT-SEEEEEE-HHHHCCHHHTTTEEEEES----TTTCCSS-ESEEEEESSGGG
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCC-CcceeeccHhhhhcccccccccccccc---HHhhhcc-ccceeeehhhhh
Confidence 56778899999999999999999876211 1345566666666555522122 3344 3467788 999999999999
Q ss_pred ccc-cHHHHHHHhhhhccCC--eEEEEEcC
Q 027609 145 IKK-SLKAVVAEVDRILRPD--GNLILRDD 171 (221)
Q Consensus 145 ~~~-d~~~vL~EmdRVLRPG--G~~ii~d~ 171 (221)
|.+ +-..+|.-+.+.|+|| |.++|-|.
T Consensus 171 ~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 171 WSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp S-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred cchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 997 7788999999999999 99999964
No 97
>PTZ00146 fibrillarin; Provisional
Probab=98.83 E-value=3.1e-08 Score=90.01 Aligned_cols=97 Identities=18% Similarity=0.143 Sum_probs=65.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-----CCHHHHHHc-CccceeccccccC-CCCC-CccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-----DTLPIIYER-GLFGLYHDWCESF-NTYP-RTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-----~~l~~a~eR-Gl~~~~~d~~e~f-~~yp-~sFDlVh~~~v 141 (221)
...+|||+|||+|+++..|++.--..-.|..+|.+ ++++.+.+| .+..++.|...+. ...+ .+||+|.|+..
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva 211 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVA 211 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCC
Confidence 45789999999999999998862111135666654 266666665 3444555643321 0113 78999999853
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
+ +++...++.|+.|+|||||+|+|.
T Consensus 212 -~--pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 212 -Q--PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred -C--cchHHHHHHHHHHhccCCCEEEEE
Confidence 2 324556778999999999999995
No 98
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.82 E-value=2.7e-08 Score=83.63 Aligned_cols=113 Identities=16% Similarity=0.171 Sum_probs=70.8
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCCCCCccCeeeecc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNTYPRTYDLLHADH 140 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~yp~sFDlVh~~~ 140 (221)
....+|||+|||+|.++..++... ....++.+|.+ ++++.+.++ |+.. ++ .|..+.+......+|.++...
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence 346789999999999998887542 11257888875 577766653 4422 22 222121211223467665431
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHhcCC
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHW 187 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~l~W 187 (221)
..+...++.++.|+|+|||.+++..... .+..+.+.++.+.+
T Consensus 118 -----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~ 160 (196)
T PRK07402 118 -----GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQA 160 (196)
T ss_pred -----CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCC
Confidence 1256799999999999999999987543 34445555655533
No 99
>PLN03075 nicotianamine synthase; Provisional
Probab=98.80 E-value=1.4e-08 Score=92.49 Aligned_cols=132 Identities=9% Similarity=0.094 Sum_probs=87.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCC-CeEEEeccCCCC-CCHHHHHH-----cCccc----eeccccccCCCCCCccCeeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESP-DTLPIIYE-----RGLFG----LYHDWCESFNTYPRTYDLLHA 138 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~-v~vmnv~~~d~~-~~l~~a~e-----RGl~~----~~~d~~e~f~~yp~sFDlVh~ 138 (221)
..++|+|+|||.|++++.+.... .....++++|.+ ++++.|++ .|+-. ..+|..+ ..+....||+|.|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~-~~~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD-VTESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh-cccccCCcCEEEE
Confidence 67999999999998877755421 111246788875 46665554 33322 2345433 1111278999999
Q ss_pred cccccccc-ccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHh-------cCCeEEEeecCC---CeeEEEEEecc
Q 027609 139 DHLFSTIK-KSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKS-------LHWDVRMIYTND---NQGMLCVHKTY 207 (221)
Q Consensus 139 ~~v~~h~~-~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~-------l~W~~~~~~~~~---~e~~l~~~K~~ 207 (221)
. +++++. .++..+|..+.|.|||||+++++-.+.. .+++.. -.|++-...|.. -.-+++++|.-
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~----r~~LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGA----RAFLYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPG 276 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEecccch----HhhcCCCCChhhCCCeEEEEEECCCCCceeeEEEEEeec
Confidence 9 888884 3899999999999999999999974421 111111 178776554433 35688999965
No 100
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.80 E-value=2.9e-08 Score=95.84 Aligned_cols=130 Identities=12% Similarity=0.270 Sum_probs=89.8
Q ss_pred CCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc---e-eccccccCCCCC-CccCeeeec
Q 027609 71 VRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG---L-YHDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~-~~d~~e~f~~yp-~sFDlVh~~ 139 (221)
..+|||+|||+|.++..|+.+ +- .+++++|.+ .+++.+.++ |+.. + ..|+ +..++ ++||+|.|+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~--~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~---~~~~~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPN--ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW---FENIEKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch---hhhCcCCCccEEEEC
Confidence 468999999999999988765 22 257888886 588877765 4322 1 2343 23345 789999995
Q ss_pred c--------------ccccccc-----------cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE--Ee
Q 027609 140 H--------------LFSTIKK-----------SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR--MI 192 (221)
Q Consensus 140 ~--------------v~~h~~~-----------d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~--~~ 192 (221)
- +..|.+. ....++.++.++|+|||.+++--.....+.+.+++....|+.. ..
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~~~ 293 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESVYK 293 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEEEe
Confidence 2 1111110 2345678899999999999997666667888888888888743 44
Q ss_pred ecCCCeeEEEEEe
Q 027609 193 YTNDNQGMLCVHK 205 (221)
Q Consensus 193 ~~~~~e~~l~~~K 205 (221)
|-.+.++++++.-
T Consensus 294 D~~g~~R~v~~~~ 306 (506)
T PRK01544 294 DLQGHSRVILISP 306 (506)
T ss_pred cCCCCceEEEecc
Confidence 5567788887753
No 101
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.79 E-value=2.6e-08 Score=91.11 Aligned_cols=94 Identities=12% Similarity=0.108 Sum_probs=64.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCcc-------ceeccc-cccCCCCCCccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLF-------GLYHDW-CESFNTYPRTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~-------~~~~d~-~e~f~~yp~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|++++. +|+++|.+ +|++.+.++.-. ....++ +..+..++++||+|.|..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence 356899999999999999999864 57999987 599988887311 000000 111233468999999999
Q ss_pred cccccccc-HHHHHHHhhhhccCCeEEE
Q 027609 141 LFSTIKKS-LKAVVAEVDRILRPDGNLI 167 (221)
Q Consensus 141 v~~h~~~d-~~~vL~EmdRVLRPGG~~i 167 (221)
+++|++++ ...++..+.++ .+||.++
T Consensus 221 vL~H~p~~~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EEEecCHHHHHHHHHHHHhh-cCCEEEE
Confidence 99999852 33456666654 5666644
No 102
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.78 E-value=9.4e-09 Score=84.48 Aligned_cols=71 Identities=11% Similarity=0.171 Sum_probs=54.7
Q ss_pred cCCCC-CCHHHHHHcCc---------cceeccccccCCCCC-CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEE
Q 027609 100 PIESP-DTLPIIYERGL---------FGLYHDWCESFNTYP-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLIL 168 (221)
Q Consensus 100 ~~d~~-~~l~~a~eRGl---------~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii 168 (221)
++|.+ +|+++|.+|-- +..+..-++.+ +|+ ++||+|.|..+++++. |+..+|.|+.|||||||.+++
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~v~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PFDDCEFDAVTMGYGLRNVV-DRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CCCCCCeeEEEecchhhcCC-CHHHHHHHHHHHcCcCeEEEE
Confidence 56776 59999866521 22222224555 466 8999999999999888 899999999999999999998
Q ss_pred EcCh
Q 027609 169 RDDA 172 (221)
Q Consensus 169 ~d~~ 172 (221)
.|-.
T Consensus 80 ~d~~ 83 (160)
T PLN02232 80 LDFN 83 (160)
T ss_pred EECC
Confidence 8754
No 103
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.78 E-value=3.9e-08 Score=86.76 Aligned_cols=125 Identities=16% Similarity=0.151 Sum_probs=85.1
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----CccceeccccccCCC-CCCccCeeeeccccc-
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFGLYHDWCESFNT-YPRTYDLLHADHLFS- 143 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~~~d~~e~f~~-yp~sFDlVh~~~v~~- 143 (221)
..+|||+|||+|.++..|+++.- ..+++++|.+ .+++.+.++ |.--...|+.+.++. +...||+|.++-=+.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 45899999999999999876521 1256888885 577776654 221123354332221 236799999873211
Q ss_pred -------------cccc-------c----HHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEeecCC
Q 027609 144 -------------TIKK-------S----LKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTND 196 (221)
Q Consensus 144 -------------h~~~-------d----~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~~~~~ 196 (221)
|.+. | ...++..+.++|+|||.+++.-.....+.+..+++..+|+..+..+++
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEccc
Confidence 1100 1 247777888999999999998777778889999999899887776655
No 104
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.73 E-value=6.7e-08 Score=84.38 Aligned_cols=122 Identities=15% Similarity=0.170 Sum_probs=70.7
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCCCCHHHHHHcCccceeccccccCCCCC-CccCeeeeccccccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKK 147 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~ 147 (221)
..-.|=|+|||-+.+|+++.+. .|.-.++++.+. + + +.-|. ... |.+ .+.|++.+...+. -.
T Consensus 72 ~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~---------~-V--tacdi-a~v-PL~~~svDv~VfcLSLM--GT 135 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNP---------R-V--TACDI-ANV-PLEDESVDVAVFCLSLM--GT 135 (219)
T ss_dssp TTS-EEEES-TT-HHHHH--S---EEEEESS-SST---------T-E--EES-T-TS--S--TT-EEEEEEES-----SS
T ss_pred CCEEEEECCCchHHHHHhcccCceEEEeeccCCCC---------C-E--EEecC-ccC-cCCCCceeEEEEEhhhh--CC
Confidence 3568999999999999887543 233334444321 1 1 22232 122 455 9999999965543 33
Q ss_pred cHHHHHHHhhhhccCCeEEEEEcChhh---HHHHHHHHHhcCCeEEEeecCC-CeeEEEEEecc
Q 027609 148 SLKAVVAEVDRILRPDGNLILRDDAET---IVEVEDLVKSLHWDVRMIYTND-NQGMLCVHKTY 207 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~~ii~d~~~~---~~~i~~i~~~l~W~~~~~~~~~-~e~~l~~~K~~ 207 (221)
|..++|.|..|||||||.++|.|...- .+...+.++++..+....|..+ -=.++..+|.-
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIR 199 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-S
T ss_pred CcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcC
Confidence 899999999999999999999987654 3455566888999988776433 23444455544
No 105
>PRK04457 spermidine synthase; Provisional
Probab=98.73 E-value=1.1e-07 Score=84.55 Aligned_cols=135 Identities=13% Similarity=0.097 Sum_probs=82.4
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc-Cccc------e-eccccccCCCCCCccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER-GLFG------L-YHDWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR-Gl~~------~-~~d~~e~f~~yp~sFDlVh~~ 139 (221)
...++|||+|||.|.++..|+.+- ....++.+|.. ++++++.+. ++.+ + ..|..+-+...+.+||+|.++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 357899999999999999997762 12356777774 588888876 2221 1 234222233346789999986
Q ss_pred cccccc--cc--cHHHHHHHhhhhccCCeEEEEE---cChhhHHHHHHHHHhcCCeEEEee-cCCCeeEEEEEe
Q 027609 140 HLFSTI--KK--SLKAVVAEVDRILRPDGNLILR---DDAETIVEVEDLVKSLHWDVRMIY-TNDNQGMLCVHK 205 (221)
Q Consensus 140 ~v~~h~--~~--d~~~vL~EmdRVLRPGG~~ii~---d~~~~~~~i~~i~~~l~W~~~~~~-~~~~e~~l~~~K 205 (221)
.|... +. .-..++.++.++|+|||.+++- .+.....-++.+.....-.+.... .++...+++|.|
T Consensus 144 -~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~~~N~v~~a~~ 216 (262)
T PRK04457 144 -GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAESHGNVAVFAFK 216 (262)
T ss_pred -CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCCCccEEEEEEC
Confidence 34321 11 2369999999999999999983 222222223333333222222222 234567888877
No 106
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.70 E-value=5.4e-08 Score=82.57 Aligned_cols=91 Identities=20% Similarity=0.177 Sum_probs=63.1
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCCCC--CccCeee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNTYP--RTYDLLH 137 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~yp--~sFDlVh 137 (221)
.....+|||+|||+|.+++.|+.... .++.+|.+ ++++.+.++ |+.. .. .|. +..++ ++||+|.
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~I~ 149 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG---WKGWPAYAPFDRIL 149 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc---ccCCCcCCCcCEEE
Confidence 34468999999999999988877632 46777775 477766654 3322 22 232 22333 7999999
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
++..+.+++ .++.+.|+|||.+++.-.
T Consensus 150 ~~~~~~~~~-------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 150 VTAAAPEIP-------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred EccCchhhh-------HHHHHhcCCCcEEEEEEc
Confidence 987665543 456789999999998743
No 107
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.7e-07 Score=84.24 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=99.6
Q ss_pred chhhhhhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--
Q 027609 45 FTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG-- 117 (221)
Q Consensus 45 f~~d~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~-- 117 (221)
.+.||..+-..+.. .+. .... +|||+|||+|.+|.+|+.+... .+|+++|.+ +.+++|.+. |+..
T Consensus 92 Pr~dTe~Lve~~l~----~~~--~~~~-~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~ 163 (280)
T COG2890 92 PRPDTELLVEAALA----LLL--QLDK-RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVL 163 (280)
T ss_pred cCCchHHHHHHHHH----hhh--hcCC-cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEE
Confidence 34777777776531 111 1111 8999999999999999988532 368999986 577766554 4422
Q ss_pred -eeccccccCCCCCCccCeeeecc--ccc-----------ccc-----------ccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 118 -LYHDWCESFNTYPRTYDLLHADH--LFS-----------TIK-----------KSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 118 -~~~d~~e~f~~yp~sFDlVh~~~--v~~-----------h~~-----------~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+..|| |...+.+||+|.|+= +=. |-+ +-...++.+..++|+|||++++--..
T Consensus 164 ~~~~dl---f~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~ 240 (280)
T COG2890 164 VVQSDL---FEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL 240 (280)
T ss_pred EEeeec---ccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence 12244 445557999998861 100 111 03356788899999999999999887
Q ss_pred hhHHHHHHHHHhcCC-eEE--EeecCCCeeEEEEEe
Q 027609 173 ETIVEVEDLVKSLHW-DVR--MIYTNDNQGMLCVHK 205 (221)
Q Consensus 173 ~~~~~i~~i~~~l~W-~~~--~~~~~~~e~~l~~~K 205 (221)
...+.+++++....+ ... ..+-.+.++++++++
T Consensus 241 ~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 241 TQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred CcHHHHHHHHHhcCCceEEEEEecCCCceEEEEEEe
Confidence 778899999999984 322 223345677777665
No 108
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.67 E-value=5.5e-08 Score=85.90 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=88.3
Q ss_pred hhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccc--eeccccccCCCCCCccCeee
Q 027609 61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFG--LYHDWCESFNTYPRTYDLLH 137 (221)
Q Consensus 61 ~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~--~~~d~~e~f~~yp~sFDlVh 137 (221)
.++|.+....-+-|||+|||+|--+..|.+.| .. .+++|.| .||++|.+|-+.| ++.|..+.+++=|+|||-+.
T Consensus 41 LELLalp~~~~~~iLDIGCGsGLSg~vL~~~G-h~--wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 41 LELLALPGPKSGLILDIGCGSGLSGSVLSDSG-HQ--WIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVI 117 (270)
T ss_pred HHHhhCCCCCCcEEEEeccCCCcchheeccCC-ce--EEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEE
Confidence 34555666678899999999999999998887 32 5789987 5999999875654 56688888863359999987
Q ss_pred eccccc---c----ccccHHH----HHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCe
Q 027609 138 ADHLFS---T----IKKSLKA----VVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWD 188 (221)
Q Consensus 138 ~~~v~~---h----~~~d~~~----vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~ 188 (221)
+-..++ | ++ +|.. ++.-...+|++|+..++.=-.+..+.++-|...-.|.
T Consensus 118 SISAvQWLcnA~~s~~-~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~a 178 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLH-VPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKA 178 (270)
T ss_pred EeeeeeeecccCcccc-ChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhh
Confidence 654443 1 11 4444 5667899999999999994444444444444444443
No 109
>PRK00811 spermidine synthase; Provisional
Probab=98.67 E-value=6e-08 Score=86.96 Aligned_cols=144 Identities=16% Similarity=0.164 Sum_probs=85.5
Q ss_pred hhhhccc----CCCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc------Cc-----cce-ec
Q 027609 59 SYLNGMG----INWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER------GL-----FGL-YH 120 (221)
Q Consensus 59 ~Y~~~L~----i~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR------Gl-----~~~-~~ 120 (221)
.|.++|. +.....++|||+|||.|+++..++++ ++. +|+.+|.. ++++++.+. |. +.+ ..
T Consensus 61 ~Y~e~l~h~~~~~~~~p~~VL~iG~G~G~~~~~~l~~~~~~--~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~ 138 (283)
T PRK00811 61 IYHEMMTHVPLFAHPNPKRVLIIGGGDGGTLREVLKHPSVE--KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIG 138 (283)
T ss_pred hHHHHhhhHHHhhCCCCCEEEEEecCchHHHHHHHcCCCCC--EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEEC
Confidence 3555553 23345789999999999999999887 443 56677764 488877764 11 011 22
Q ss_pred cccccCCCC-CCccCeeeeccccccccc----cHHHHHHHhhhhccCCeEEEEEcChh-----hHHHHHHHHHhcCCeEE
Q 027609 121 DWCESFNTY-PRTYDLLHADHLFSTIKK----SLKAVVAEVDRILRPDGNLILRDDAE-----TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 121 d~~e~f~~y-p~sFDlVh~~~v~~h~~~----d~~~vL~EmdRVLRPGG~~ii~d~~~-----~~~~i~~i~~~l~W~~~ 190 (221)
|. ..+... +++||+|.+... .++.. --..++.++.|+|+|||.+++.-..+ ....+.+-+++.--.+.
T Consensus 139 Da-~~~l~~~~~~yDvIi~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~ 216 (283)
T PRK00811 139 DG-IKFVAETENSFDVIIVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVR 216 (283)
T ss_pred ch-HHHHhhCCCcccEEEECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEE
Confidence 32 112222 389999998643 22211 12677899999999999999863322 23333333444333333
Q ss_pred Eee------cCCCeeEEEEEec
Q 027609 191 MIY------TNDNQGMLCVHKT 206 (221)
Q Consensus 191 ~~~------~~~~e~~l~~~K~ 206 (221)
... ..+.-.+++|.|.
T Consensus 217 ~~~~~vp~~~~~~w~f~~as~~ 238 (283)
T PRK00811 217 PYQAAIPTYPSGLWSFTFASKN 238 (283)
T ss_pred EEEeECCcccCchheeEEeecC
Confidence 221 1223467888884
No 110
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.66 E-value=9.3e-08 Score=79.13 Aligned_cols=137 Identities=14% Similarity=0.133 Sum_probs=74.9
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccceecc---------ccccCCCCCCccCee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHD---------WCESFNTYPRTYDLL 136 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d---------~~e~f~~yp~sFDlV 136 (221)
+..+...+|||+||++|||+..+.+++.....++++|...+-+. ++...+..| ..+.+..-...||+|
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~---~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv 95 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL---QNVSFIQGDITNPENIKDIRKLLPESGEKFDLV 95 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS----TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc---cceeeeecccchhhHHHhhhhhccccccCccee
Confidence 45657899999999999999999999733335666665432111 111111111 111111011699999
Q ss_pred eeccccc--------cccc--cHHHHHHHhhhhccCCeEEEEE-----cChhhHHHHHHHHHhcCCeEEE-eecCCCeeE
Q 027609 137 HADHLFS--------TIKK--SLKAVVAEVDRILRPDGNLILR-----DDAETIVEVEDLVKSLHWDVRM-IYTNDNQGM 200 (221)
Q Consensus 137 h~~~v~~--------h~~~--d~~~vL~EmdRVLRPGG~~ii~-----d~~~~~~~i~~i~~~l~W~~~~-~~~~~~e~~ 200 (221)
.|..... ++.. --...|.=+-..|||||.+|+. +.+.++..++..+..+++-.-. .-.++.|..
T Consensus 96 ~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~Kp~~sr~~s~E~Y 175 (181)
T PF01728_consen 96 LSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVKPPSSRSESSEEY 175 (181)
T ss_dssp EE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-TTSBTTCBEEE
T ss_pred ccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEECcCCCCCccEEE
Confidence 9997332 2221 1223333344679999998886 2345566666666665443211 123468999
Q ss_pred EEEEe
Q 027609 201 LCVHK 205 (221)
Q Consensus 201 l~~~K 205 (221)
|||++
T Consensus 176 lv~~~ 180 (181)
T PF01728_consen 176 LVCRG 180 (181)
T ss_dssp EESEE
T ss_pred EEEcC
Confidence 99875
No 111
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.66 E-value=1e-08 Score=78.00 Aligned_cols=97 Identities=18% Similarity=0.289 Sum_probs=65.2
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc---ccee-ccccccCCCCC-CccCeeeeccc
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL---FGLY-HDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl---~~~~-~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
.+|||+|||+|.++.++++++ ..+++++|.. ..++.++.+ ++ +.++ .|..+....++ +.||+|.++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 479999999999999998887 2367888875 466666554 12 1122 23322111355 99999999866
Q ss_pred ccccc-------ccHHHHHHHhhhhccCCeEEEEEc
Q 027609 142 FSTIK-------KSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 142 ~~h~~-------~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
+.... .....++.++.|+|||||.+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 65321 134688999999999999998754
No 112
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.65 E-value=9.5e-08 Score=90.07 Aligned_cols=116 Identities=18% Similarity=0.227 Sum_probs=74.2
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc-c-eeccccccCCC-CC-CccCeee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF-G-LYHDWCESFNT-YP-RTYDLLH 137 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~-~-~~~d~~e~f~~-yp-~sFDlVh 137 (221)
......+|||+|||+|+++..++++.-- ..|+.+|.+ .+++.+.++ |+. . ..+|..+ +.. ++ ++||.|.
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~-~~~~~~~~~fD~Vl 318 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARD-PAQWWDGQPFDRIL 318 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCccc-chhhcccCCCCEEE
Confidence 3445679999999999999999886321 257888886 477766554 331 1 2234322 222 44 7899999
Q ss_pred ecccc------cc-----cccc----------HHHHHHHhhhhccCCeEEEEEcC----hhhHHHHHHHHHh
Q 027609 138 ADHLF------ST-----IKKS----------LKAVVAEVDRILRPDGNLILRDD----AETIVEVEDLVKS 184 (221)
Q Consensus 138 ~~~v~------~h-----~~~d----------~~~vL~EmdRVLRPGG~~ii~d~----~~~~~~i~~i~~~ 184 (221)
++--+ .+ |..+ ...+|.++.++|||||.++++++ .+..+.++..+.+
T Consensus 319 ~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 319 LDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred ECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 44211 11 1111 24689999999999999999986 3334555555544
No 113
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.65 E-value=9.5e-08 Score=89.96 Aligned_cols=115 Identities=16% Similarity=0.237 Sum_probs=72.8
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccccee--ccccccC--CCC-C-CccCe
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFGLY--HDWCESF--NTY-P-RTYDL 135 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~~--~d~~e~f--~~y-p-~sFDl 135 (221)
......+|||+|||+|+++.++++.-- ...++++|.+ ++++.+.++ |+...+ .+ +..+ ..+ + ++||.
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~-~d~~~~~~~~~~~~fD~ 312 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKD-GDGRGPSQWAENEQFDR 312 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec-cccccccccccccccCE
Confidence 344568999999999999999887521 1257888886 477655544 442111 21 1111 221 4 88999
Q ss_pred eeec------cccccccc---------------cHHHHHHHhhhhccCCeEEEEEcChh----hHHHHHHHHH
Q 027609 136 LHAD------HLFSTIKK---------------SLKAVVAEVDRILRPDGNLILRDDAE----TIVEVEDLVK 183 (221)
Q Consensus 136 Vh~~------~v~~h~~~---------------d~~~vL~EmdRVLRPGG~~ii~d~~~----~~~~i~~i~~ 183 (221)
|.+. .++.+-++ ....+|.++.|+|||||.++++++.- .-+.|+.++.
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~ 385 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ 385 (426)
T ss_pred EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence 9853 33433221 13679999999999999999997632 3344555544
No 114
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.64 E-value=1.2e-07 Score=86.29 Aligned_cols=112 Identities=13% Similarity=0.195 Sum_probs=75.8
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCCCC-CccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~yp-~sFDlVh~~ 139 (221)
....+|||.|||+|+++..++..+. ++.++|.+ .|++.+..+ |+.+ + ..|. ..+ +++ ++||+|.|+
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~-~~l-~~~~~~~D~Iv~d 255 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDA-TKL-PLSSESVDAIATD 255 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecch-hcC-CcccCCCCEEEEC
Confidence 3467899999999999887766654 46888886 477755543 4433 2 2332 223 344 899999996
Q ss_pred cccc-------c-ccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCC
Q 027609 140 HLFS-------T-IKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHW 187 (221)
Q Consensus 140 ~v~~-------h-~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W 187 (221)
-=+. + ..+....+|.|+.|+|||||++++..+... .++++++.-.|
T Consensus 256 PPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~--~~~~~~~~~g~ 309 (329)
T TIGR01177 256 PPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI--DLESLAEDAFR 309 (329)
T ss_pred CCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC--CHHHHHhhcCc
Confidence 2221 1 111357899999999999999988765532 45566777777
No 115
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.62 E-value=8.8e-08 Score=90.53 Aligned_cols=121 Identities=18% Similarity=0.238 Sum_probs=74.6
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCCCCCccCeeeecc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNTYPRTYDLLHADH 140 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~yp~sFDlVh~~~ 140 (221)
.+..+|||+|||+|+++..++++--....++++|.+ ++++.+.++ |+.. + ..|..+...+++++||+|.++-
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 328 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDA 328 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcC
Confidence 446789999999999999988751011257888885 466655543 4432 2 2343221223558999998652
Q ss_pred ------ccccccc---------------cHHHHHHHhhhhccCCeEEEEEcCh----hhHHHHHHHHHhc-CCeE
Q 027609 141 ------LFSTIKK---------------SLKAVVAEVDRILRPDGNLILRDDA----ETIVEVEDLVKSL-HWDV 189 (221)
Q Consensus 141 ------v~~h~~~---------------d~~~vL~EmdRVLRPGG~~ii~d~~----~~~~~i~~i~~~l-~W~~ 189 (221)
.+.+-++ ....+|.++.|+|||||.++.+++. +....++.+++.- .++.
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~ 403 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFEL 403 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEE
Confidence 1111110 1245899999999999999988764 2334555555543 2443
No 116
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.62 E-value=1e-07 Score=90.26 Aligned_cols=115 Identities=19% Similarity=0.222 Sum_probs=71.9
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCCCC-CccCeee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNTYP-RTYDLLH 137 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~yp-~sFDlVh 137 (221)
......+|||+|||+|+++..+++.---...|+++|.+ ++++.+.++ |+.. + .+|.. .+ .+ ++||+|.
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~-~~--~~~~~fD~Vl 323 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDAR-SF--SPEEQPDAIL 323 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccc-cc--ccCCCCCEEE
Confidence 34456889999999999888777641011257888886 477655543 4422 1 23422 12 24 7899998
Q ss_pred ec----c--cccc-----cc----------ccHHHHHHHhhhhccCCeEEEEEcChh----hHHHHHHHHHh
Q 027609 138 AD----H--LFST-----IK----------KSLKAVVAEVDRILRPDGNLILRDDAE----TIVEVEDLVKS 184 (221)
Q Consensus 138 ~~----~--v~~h-----~~----------~d~~~vL~EmdRVLRPGG~~ii~d~~~----~~~~i~~i~~~ 184 (221)
+. . .+.+ |. .....+|.++.|+|||||.++++++.- .-..++.++++
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 53 1 1111 11 123468999999999999999998643 24455666654
No 117
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.55 E-value=1e-07 Score=95.31 Aligned_cols=119 Identities=18% Similarity=0.229 Sum_probs=82.5
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc-c---e-eccccccCCCCCCccCeeeec-
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF-G---L-YHDWCESFNTYPRTYDLLHAD- 139 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~-~---~-~~d~~e~f~~yp~sFDlVh~~- 139 (221)
.++|||+|||+|+|+.+++..|+. .|+.+|.+ .+++.+.+. |+. . + ..|..+.+..+.++||+|.++
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 579999999999999999988764 47889986 477776664 332 1 1 224222111235799999985
Q ss_pred ----------cccccccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEe
Q 027609 140 ----------HLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 140 ----------~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~ 192 (221)
.++.... +...++....|+|+|||.+++..+........+.+..-++++.+.
T Consensus 617 P~f~~~~~~~~~~~~~~-~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQR-DHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEI 678 (702)
T ss_pred CCCCCCCccchhhhHHH-HHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEE
Confidence 1222122 567788889999999999999877665555566677777877654
No 118
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.55 E-value=2.3e-07 Score=82.38 Aligned_cols=144 Identities=14% Similarity=0.105 Sum_probs=85.0
Q ss_pred hhhccc----CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCcc-----------cee-ccc
Q 027609 60 YLNGMG----INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLF-----------GLY-HDW 122 (221)
Q Consensus 60 Y~~~L~----i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~-----------~~~-~d~ 122 (221)
|.++|. +...+.++||++|||.|+++..+++++. +.+++.+|.+ ++++.+.+. +. .+. .|.
T Consensus 58 y~e~l~~~~l~~~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~-~~~~~~~~~~~~v~i~~~D~ 135 (270)
T TIGR00417 58 YHEMIAHVPLFTHPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKF-LPSLAGSYDDPRVDLQIDDG 135 (270)
T ss_pred HHHHhhhhHhhcCCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHH-hHhhcccccCCceEEEECch
Confidence 555553 2344567999999999999999988751 2356667765 477777664 21 111 121
Q ss_pred cccCCCCCCccCeeeeccccccccc-c--HHHHHHHhhhhccCCeEEEEEcChhh-----HHHHHHHHHhcCCeEEEee-
Q 027609 123 CESFNTYPRTYDLLHADHLFSTIKK-S--LKAVVAEVDRILRPDGNLILRDDAET-----IVEVEDLVKSLHWDVRMIY- 193 (221)
Q Consensus 123 ~e~f~~yp~sFDlVh~~~v~~h~~~-d--~~~vL~EmdRVLRPGG~~ii~d~~~~-----~~~i~~i~~~l~W~~~~~~- 193 (221)
.+-+...+++||+|.++.....-.. + -..++..+.|+|+|||.+++....+. ...+.+.+++.--.+....
T Consensus 136 ~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~ 215 (270)
T TIGR00417 136 FKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTA 215 (270)
T ss_pred HHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 1111112589999998754221111 1 35788999999999999998744332 3333333444322332221
Q ss_pred -----cCCCeeEEEEEe
Q 027609 194 -----TNDNQGMLCVHK 205 (221)
Q Consensus 194 -----~~~~e~~l~~~K 205 (221)
..+.-.+++|.|
T Consensus 216 ~vp~~~~g~~~~~~as~ 232 (270)
T TIGR00417 216 NIPTYPSGLWTFTIGSK 232 (270)
T ss_pred EcCccccchhEEEEEEC
Confidence 123457889988
No 119
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.55 E-value=1.8e-07 Score=88.61 Aligned_cols=105 Identities=17% Similarity=0.237 Sum_probs=68.4
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCCC-CCccCeee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNTY-PRTYDLLH 137 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~y-p~sFDlVh 137 (221)
+.....+|||+|||+|+.+.++++.---...|+.+|.+ ++++.+.++ |+.. + ..|.. .++.+ +++||.|.
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~-~l~~~~~~~fD~Vl 312 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE-RLTEYVQDTFDRIL 312 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh-hhhhhhhccCCEEE
Confidence 34456789999999999998887751011257888886 477766544 4422 2 23432 24334 38899998
Q ss_pred eccc---cccccc------------------cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 138 ADHL---FSTIKK------------------SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 138 ~~~v---~~h~~~------------------d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
|+-- +..+.. ....+|.+..+.|||||.++++++.
T Consensus 313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 6421 111111 1256789999999999999999774
No 120
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.53 E-value=3.2e-07 Score=86.67 Aligned_cols=137 Identities=15% Similarity=0.229 Sum_probs=82.5
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCC---CC-CCccC
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFN---TY-PRTYD 134 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~---~y-p~sFD 134 (221)
......+|||+|||+|+.+.+|++.--....|+.+|.+ .+++.+.++ |+.. ++ .|. ..++ ++ +++||
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~-~~~~~~~~~~~~~fD 327 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADS-RNLLELKPQWRGYFD 327 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCCh-hhcccccccccccCC
Confidence 34446789999999999999887751111246888875 467655443 4422 22 232 2222 12 37999
Q ss_pred eeeec------cccccccc---------------cHHHHHHHhhhhccCCeEEEEEcCh----hhHHHHHHHHHhc-CCe
Q 027609 135 LLHAD------HLFSTIKK---------------SLKAVVAEVDRILRPDGNLILRDDA----ETIVEVEDLVKSL-HWD 188 (221)
Q Consensus 135 lVh~~------~v~~h~~~---------------d~~~vL~EmdRVLRPGG~~ii~d~~----~~~~~i~~i~~~l-~W~ 188 (221)
.|.+. .++.+-++ ....+|.++.|+|||||.++.+++. +....++.++++- .|+
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~ 407 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWK 407 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcE
Confidence 99864 23332221 1467899999999999999999753 3345566665543 354
Q ss_pred EEE------eecCCCeeEEEEE
Q 027609 189 VRM------IYTNDNQGMLCVH 204 (221)
Q Consensus 189 ~~~------~~~~~~e~~l~~~ 204 (221)
... ++..+.+.+++|+
T Consensus 408 ~~~~~~~~~P~~~~~dGfF~a~ 429 (434)
T PRK14901 408 LEPPKQKIWPHRQDGDGFFMAV 429 (434)
T ss_pred ecCCCCccCCCCCCCCcEEEEE
Confidence 321 1112356777764
No 121
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.52 E-value=1.9e-07 Score=80.56 Aligned_cols=113 Identities=14% Similarity=0.250 Sum_probs=80.7
Q ss_pred eEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHH----HHHHcCccc----eeccccccCCCC-CCccCeeeecccc
Q 027609 73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLP----IIYERGLFG----LYHDWCESFNTY-PRTYDLLHADHLF 142 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~----~a~eRGl~~----~~~d~~e~f~~y-p~sFDlVh~~~v~ 142 (221)
+|||+|||.|.+...|++.+..- .++++|.++ .++ +|.++|+.. .+.|.-.+ .| +..||+||--..+
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DFLSGQFDLVLDKGTL 146 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--cccccceeEEeecCce
Confidence 89999999999999999998542 478999863 444 666777765 22343221 33 5899999855444
Q ss_pred c---cccc----cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCe
Q 027609 143 S---TIKK----SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWD 188 (221)
Q Consensus 143 ~---h~~~----d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~ 188 (221)
. .-++ .+...+--+.++|+|||+|+|..++-..+++.+.+..-...
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f~ 199 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNFE 199 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCeE
Confidence 2 1111 34567778899999999999999998888887776655443
No 122
>PLN02366 spermidine synthase
Probab=98.51 E-value=2.3e-07 Score=84.66 Aligned_cols=110 Identities=20% Similarity=0.185 Sum_probs=68.5
Q ss_pred hhhhccc----CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc------Cc----cce-eccc
Q 027609 59 SYLNGMG----INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER------GL----FGL-YHDW 122 (221)
Q Consensus 59 ~Y~~~L~----i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR------Gl----~~~-~~d~ 122 (221)
.|.++|. ....+.++|||+|||.|+++.++++++ .+.+++-+|.. ++++++++. ++ +.+ ..|-
T Consensus 76 ~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da 154 (308)
T PLN02366 76 AYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDG 154 (308)
T ss_pred HHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChH
Confidence 4666654 223458899999999999999999874 22345555554 367777664 11 111 2231
Q ss_pred cccCCCCC-CccCeeeeccccccccc---cHHHHHHHhhhhccCCeEEEEE
Q 027609 123 CESFNTYP-RTYDLLHADHLFSTIKK---SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 123 ~e~f~~yp-~sFDlVh~~~v~~h~~~---d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
-+-+...+ +.||+|.+.....+-+. --..++..+.|.|+|||.++..
T Consensus 155 ~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 155 VEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred HHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 11112244 78999998643221111 1246889999999999999874
No 123
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.50 E-value=2e-07 Score=79.65 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=73.6
Q ss_pred eEEeecCcchHHHHHHhhCCCeEEEeccCCCC-----CCHHHHHHcCccce--ec-cccccCCC-CC-CccCeeeecccc
Q 027609 73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-----DTLPIIYERGLFGL--YH-DWCESFNT-YP-RTYDLLHADHLF 142 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-----~~l~~a~eRGl~~~--~~-d~~e~f~~-yp-~sFDlVh~~~v~ 142 (221)
.+||+|||.|.|..+++.+.-. .|+++++.. ..+..+..+|+.++ ++ |.-..+.. ++ +++|-|+...--
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 7999999999999999887432 277888874 24556666677553 22 21111111 44 999998875221
Q ss_pred c-----cccc--cHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhc--CCeE
Q 027609 143 S-----TIKK--SLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSL--HWDV 189 (221)
Q Consensus 143 ~-----h~~~--d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l--~W~~ 189 (221)
- |... --..+|.++.|+|+|||.+.+.++. ++.+.+...+... +++.
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~ 155 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFEN 155 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEE
Confidence 1 2111 2247899999999999999887554 4567777776664 5554
No 124
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.50 E-value=4.7e-07 Score=64.70 Aligned_cols=95 Identities=23% Similarity=0.308 Sum_probs=62.0
Q ss_pred EEeecCcchHH--HHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----c---cceeccccccCCCCCC--ccCeeeeccc
Q 027609 74 VMDMRAVYGGF--AAALKDLKVWVMNVVPIESP-DTLPIIYERG----L---FGLYHDWCESFNTYPR--TYDLLHADHL 141 (221)
Q Consensus 74 VLD~GcG~G~f--aa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l---~~~~~d~~e~f~~yp~--sFDlVh~~~v 141 (221)
++|+|||+|.. .+.+...+. .++++|.+ .++..+..+. . .....+......+++. +||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGA---YVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCc---eEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 99999999994 444444332 23446665 3555544332 1 1123332221234543 89999 7777
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcChh
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDDAE 173 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~ 173 (221)
..++. ++..++.++.|+|+|+|.+++.+...
T Consensus 128 ~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 128 VLHLL-PPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred ehhcC-CHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 76666 48999999999999999999997653
No 125
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.50 E-value=2.4e-07 Score=82.08 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=65.4
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCCCCCccCeeee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNTYPRTYDLLHA 138 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~yp~sFDlVh~ 138 (221)
......+|||+|||+|+++..|++.--....|+.+|.+ .+++.+.++ |+.. ++ .| +..++.....||.|.+
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D-~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFD-GRVFGAAVPKFDAILL 146 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCC-HHHhhhhccCCCEEEE
Confidence 33446789999999999998887641111146788875 466655443 4422 22 23 2223322367999986
Q ss_pred cc------ccccc---------------cccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 139 DH------LFSTI---------------KKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 139 ~~------v~~h~---------------~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+- ++.+- ......+|.++.+.|||||+++.+++.
T Consensus 147 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 147 DAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred cCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 42 11110 001245999999999999999999764
No 126
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.49 E-value=1.1e-06 Score=79.33 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=76.0
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccceeccccccCCCCC-CccCeeeecccccccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKKS 148 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~d 148 (221)
..-.|-|+|||-+-+|..-. ..|..+++++++.. + +.-|.. . -|.+ +|.|++.+. ++..-.|
T Consensus 180 ~~~vIaD~GCGEakiA~~~~-~kV~SfDL~a~~~~----------V--~~cDm~-~-vPl~d~svDvaV~C--LSLMgtn 242 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIASSER-HKVHSFDLVAVNER----------V--IACDMR-N-VPLEDESVDVAVFC--LSLMGTN 242 (325)
T ss_pred CceEEEecccchhhhhhccc-cceeeeeeecCCCc----------e--eecccc-C-CcCccCcccEEEee--Hhhhccc
Confidence 35569999999999886322 25777777776532 1 111211 1 2445 999999985 4433448
Q ss_pred HHHHHHHhhhhccCCeEEEEEcChhh---HHHHHHHHHhcCCeEEEeecC
Q 027609 149 LKAVVAEVDRILRPDGNLILRDDAET---IVEVEDLVKSLHWDVRMIYTN 195 (221)
Q Consensus 149 ~~~vL~EmdRVLRPGG~~ii~d~~~~---~~~i~~i~~~l~W~~~~~~~~ 195 (221)
..+++.|.+|||||||.++|.+...- +....+-+.+|..++...|-.
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh
Confidence 99999999999999999999986543 344566688899998766533
No 127
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=1.9e-06 Score=78.62 Aligned_cols=129 Identities=16% Similarity=0.275 Sum_probs=86.0
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--eeccccccCCCCCCccCeeeeccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LYHDWCESFNTYPRTYDLLHADHLFS 143 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~~d~~e~f~~yp~sFDlVh~~~v~~ 143 (221)
.-+|||+|||+|-+++.|+++.- ...++-+|.+ ..++.+++. ++.+ ++++ ..+++-...||+|.|+==||
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s--~~~~~v~~kfd~IisNPPfh 235 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWAS--NLYEPVEGKFDLIISNPPFH 235 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEe--cccccccccccEEEeCCCcc
Confidence 33999999999999999999853 2356777775 366655443 3444 3332 12333336999999987676
Q ss_pred cccc----cHHHHHHHhhhhccCCeEEEEEc--ChhhHHHHHHHHHhcCCeEEEeecCCCeeEEEEEec
Q 027609 144 TIKK----SLKAVVAEVDRILRPDGNLILRD--DAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKT 206 (221)
Q Consensus 144 h~~~----d~~~vL~EmdRVLRPGG~~ii~d--~~~~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K~ 206 (221)
.=.. --+.++.+..+-|++||-+.|-- ..++-..|++++. ++...-.+++-+||-++|.
T Consensus 236 ~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~~gf~Vl~a~k~ 300 (300)
T COG2813 236 AGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKNGGFKVLRAKKA 300 (300)
T ss_pred CCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeCCCEEEEEEecC
Confidence 2221 23578999999999999887663 3445566666655 4555556667788877763
No 128
>PRK01581 speE spermidine synthase; Validated
Probab=98.45 E-value=9.5e-07 Score=82.76 Aligned_cols=148 Identities=11% Similarity=0.116 Sum_probs=89.4
Q ss_pred hhhhccc----CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc--------C-c--cc---ee
Q 027609 59 SYLNGMG----INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER--------G-L--FG---LY 119 (221)
Q Consensus 59 ~Y~~~L~----i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR--------G-l--~~---~~ 119 (221)
.|.+.|- ....+.++||++|||.|+.++.+++++ .+.+++.+|.. +++++|.+. | + +. .+
T Consensus 135 iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi 213 (374)
T PRK01581 135 IYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHV 213 (374)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEE
Confidence 3555443 234557899999999999999998875 22356777775 589988862 1 1 11 12
Q ss_pred ccccccCCCCCCccCeeeecccccccc----c-cHHHHHHHhhhhccCCeEEEEEcChhh-----HHHHHHHHHhcCCeE
Q 027609 120 HDWCESFNTYPRTYDLLHADHLFSTIK----K-SLKAVVAEVDRILRPDGNLILRDDAET-----IVEVEDLVKSLHWDV 189 (221)
Q Consensus 120 ~d~~e~f~~yp~sFDlVh~~~v~~h~~----~-d~~~vL~EmdRVLRPGG~~ii~d~~~~-----~~~i~~i~~~l~W~~ 189 (221)
.|..+-+..-++.||+|.++. ..... . --..++..+.|.|+|||.+++....+. ...+.+.+++....+
T Consensus 214 ~Da~~fL~~~~~~YDVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v 292 (374)
T PRK01581 214 CDAKEFLSSPSSLYDVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTV 292 (374)
T ss_pred CcHHHHHHhcCCCccEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCce
Confidence 332221112247899999983 21110 0 125688999999999999998855332 233444455555555
Q ss_pred EEeec-----CCCeeEEEEEeccc
Q 027609 190 RMIYT-----NDNQGMLCVHKTYW 208 (221)
Q Consensus 190 ~~~~~-----~~~e~~l~~~K~~w 208 (221)
..+.. .+.=.+.+|.|.-.
T Consensus 293 ~~y~t~vPsyg~~WgF~~as~~~~ 316 (374)
T PRK01581 293 KSYHTIVPSFGTDWGFHIAANSAY 316 (374)
T ss_pred EEEEEecCCCCCceEEEEEeCCcc
Confidence 43321 12256888877544
No 129
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.44 E-value=4.9e-07 Score=80.53 Aligned_cols=110 Identities=13% Similarity=0.209 Sum_probs=77.3
Q ss_pred hcccCCCCCCCeEEeecCcchHHHHHHhhCCC-eEEEeccCCCC-CCHHHHHHcCc------cceeccccccCC--C-CC
Q 027609 62 NGMGINWSFVRNVMDMRAVYGGFAAALKDLKV-WVMNVVPIESP-DTLPIIYERGL------FGLYHDWCESFN--T-YP 130 (221)
Q Consensus 62 ~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v-~vmnv~~~d~~-~~l~~a~eRGl------~~~~~d~~e~f~--~-yp 130 (221)
.++.+....-..||.+|||.|...--|++-.. .-+.+.+-|-+ +.+++..++-- -..++|++.+=. + .+
T Consensus 63 el~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~ 142 (264)
T KOG2361|consen 63 ELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEE 142 (264)
T ss_pred HhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCc
Confidence 33333333333899999999988777766522 12345666654 57776666532 235566655422 2 34
Q ss_pred CccCeeeeccccccccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 131 RTYDLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 131 ~sFDlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+++|+|.+-.+|+-++. .+..++..+.|+|||||.+++||=
T Consensus 143 ~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 143 GSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred CccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 99999999999987765 889999999999999999999973
No 130
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.40 E-value=5.4e-07 Score=78.87 Aligned_cols=123 Identities=16% Similarity=0.196 Sum_probs=77.4
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHc-----Cccc-eeccccccCCCCCCccCeeeecccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER-----GLFG-LYHDWCESFNTYPRTYDLLHADHLF 142 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eR-----Gl~~-~~~d~~e~f~~yp~sFDlVh~~~v~ 142 (221)
....++||.|||-|..+..|+-.-...+.++... +..++.|.+. +-++ .+.---+.|.|-+..||+|+|.=|+
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~-~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPV-EKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES--HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccC-HHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 4688999999999999998866544443444322 2366777632 2222 2221112233334799999999999
Q ss_pred ccccc-cHHHHHHHhhhhccCCeEEEEEcChh----------------hHHHHHHHHHhcCCeEEEe
Q 027609 143 STIKK-SLKAVVAEVDRILRPDGNLILRDDAE----------------TIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 143 ~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~~----------------~~~~i~~i~~~l~W~~~~~ 192 (221)
.|+++ |...+|.-...-|+|+|++|+.|... -.+.+.+|+++-..++...
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 99998 99999999999999999999996421 1466777777777776543
No 131
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.36 E-value=2.9e-06 Score=75.63 Aligned_cols=121 Identities=17% Similarity=0.308 Sum_probs=84.4
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHHc----Cc---cceec-cccccCCCCC-CccCeeee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYER----GL---FGLYH-DWCESFNTYP-RTYDLLHA 138 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eR----Gl---~~~~~-d~~e~f~~yp-~sFDlVh~ 138 (221)
....+|||+|||.|..+-.|++|--. ..+++++..+ +.+.|.+. ++ +.+++ |.-+-....+ .+||+|.|
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 34889999999999999999998211 2456666643 44444332 12 22343 2222111234 67999998
Q ss_pred ccccc---------------ccc-c-cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE
Q 027609 139 DHLFS---------------TIK-K-SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 139 ~~v~~---------------h~~-~-d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~ 190 (221)
+==+- |+. . +.++++.=..++|||||++.+--..+.+.++-.++++++|...
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k 190 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPK 190 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCce
Confidence 72220 111 1 7889999999999999999999999999999999999999875
No 132
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.35 E-value=1e-06 Score=79.02 Aligned_cols=92 Identities=21% Similarity=0.350 Sum_probs=72.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccce-eccccccCCCCCCccCeeeeccccccccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGL-YHDWCESFNTYPRTYDLLHADHLFSTIKK 147 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~-~~d~~e~f~~yp~sFDlVh~~~v~~h~~~ 147 (221)
...++||+|||-|+.++.|+.. .-+|..++.| .|...-.+||.--. ..+|.+ -+..||+|-|-.++..-.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~----~~~~fDvIscLNvLDRc~- 165 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQ----TDFKFDVISCLNVLDRCD- 165 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhhc----cCCceEEEeehhhhhccC-
Confidence 5778999999999999999663 1145666766 48888889987311 223432 147899999999998666
Q ss_pred cHHHHHHHhhhhccCCeEEEEE
Q 027609 148 SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
+|..+|.+|++.|+|+|.+++.
T Consensus 166 ~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 166 RPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred CHHHHHHHHHHHhCCCCEEEEE
Confidence 8999999999999999999998
No 133
>PRK03612 spermidine synthase; Provisional
Probab=98.30 E-value=3.1e-06 Score=82.00 Aligned_cols=121 Identities=13% Similarity=0.101 Sum_probs=76.4
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC-c----------cc--ee-ccccccCCCCCCcc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG-L----------FG--LY-HDWCESFNTYPRTY 133 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG-l----------~~--~~-~d~~e~f~~yp~sF 133 (221)
.+.++|||+|||.|..+..+++++. +-.++.+|.+ ++++.+++.- + +. ++ .|--+-+...+++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4578999999999999999988752 1256777764 5888887731 1 11 12 23111111235899
Q ss_pred Ceeeeccccccccc----cHHHHHHHhhhhccCCeEEEEEcC-----hhhHHHHHHHHHhcCCeEE
Q 027609 134 DLLHADHLFSTIKK----SLKAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 134 DlVh~~~v~~h~~~----d~~~vL~EmdRVLRPGG~~ii~d~-----~~~~~~i~~i~~~l~W~~~ 190 (221)
|+|.++.....-+. --..++.++.|.|||||.+++... .+....+.+.+++.+..+.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 99999732211110 124688999999999999999643 2234455666666656443
No 134
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.30 E-value=2e-06 Score=73.88 Aligned_cols=126 Identities=14% Similarity=0.205 Sum_probs=75.5
Q ss_pred chhhhhhhHHHHHhhhhhccc-CCCCCCCeEEeecCcchH----HHHHHhh--C--CCeEEEeccCCCC-CCHHHHHHcC
Q 027609 45 FTADYQHWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYGG----FAAALKD--L--KVWVMNVVPIESP-DTLPIIYERG 114 (221)
Q Consensus 45 f~~d~~~W~~~v~~~Y~~~L~-i~~~~~r~VLD~GcG~G~----faa~L~~--~--~v~vmnv~~~d~~-~~l~~a~eRG 114 (221)
|=.|...|.......-...+. ...+..-+|..+||++|- +|..|.+ . .-|-+.+.++|.+ ..|+.|. +|
T Consensus 5 FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar-~G 83 (196)
T PF01739_consen 5 FFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKAR-AG 83 (196)
T ss_dssp TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHH-HT
T ss_pred ccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHH-hC
Confidence 567778888877652224443 334467889999999994 6666666 1 2345688999986 4777653 33
Q ss_pred c---------cc---------------------------eeccccccCCCCCCccCeeeeccccccccc-cHHHHHHHhh
Q 027609 115 L---------FG---------------------------LYHDWCESFNTYPRTYDLLHADHLFSTIKK-SLKAVVAEVD 157 (221)
Q Consensus 115 l---------~~---------------------------~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~-d~~~vL~Emd 157 (221)
. +. ..||+.+ ..+.++.||+|.|..|+.++.. .-..++.-+.
T Consensus 84 ~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~ 162 (196)
T PF01739_consen 84 IYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLH 162 (196)
T ss_dssp EEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-HHHHHHHHHHHG
T ss_pred CCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCHHHHHHHHHHHH
Confidence 2 00 2356555 2223499999999999998876 6689999999
Q ss_pred hhccCCeEEEEEcCh
Q 027609 158 RILRPDGNLILRDDA 172 (221)
Q Consensus 158 RVLRPGG~~ii~d~~ 172 (221)
+.|+|||++++....
T Consensus 163 ~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 163 RSLKPGGYLFLGHSE 177 (196)
T ss_dssp GGEEEEEEEEE-TT-
T ss_pred HHcCCCCEEEEecCc
Confidence 999999999999654
No 135
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.29 E-value=1.1e-06 Score=80.62 Aligned_cols=93 Identities=16% Similarity=0.051 Sum_probs=59.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH----cCccc---eeccccccCCCCCCccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE----RGLFG---LYHDWCESFNTYPRTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e----RGl~~---~~~d~~e~f~~yp~sFDlVh~~~v 141 (221)
...+|||+|||+|.+++.|++.....-.|+.+|.+ ++++.+.+ .|+.. ...|..+. .+....||+|.+...
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~-~~~~~~fD~Ii~~~g 158 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYG-VPEFAPYDVIFVTVG 158 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhc-ccccCCccEEEECCc
Confidence 45789999999999999998752111135777775 57776665 34422 12232221 111278999998754
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
+.+.+ ..+.|+|||||.+++-.
T Consensus 159 ~~~ip-------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 159 VDEVP-------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hHHhH-------HHHHHhcCCCCEEEEEe
Confidence 43332 34568999999998854
No 136
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.28 E-value=8.2e-07 Score=82.95 Aligned_cols=92 Identities=22% Similarity=0.334 Sum_probs=65.4
Q ss_pred eEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHH---------HHHcCccceeccccccCCCCC-CccCeeeeccc
Q 027609 73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPI---------IYERGLFGLYHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~---------a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
.++|+|||+|+...++..-.. -++.+++... .+.. +.++-.+ +.+|. - ..+|+ ++||.+.+..+
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~-~~~~~-~-~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLDNKCNF-VVADF-G-KMPFEDNTFDGVRFLEV 187 (364)
T ss_pred cccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhhhhcce-ehhhh-h-cCCCCccccCcEEEEee
Confidence 789999999999888765431 1345555431 1111 1111112 33332 1 34677 99999999999
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.+|.+ ++..++.|+.|||+|||+++.-+
T Consensus 188 ~~~~~-~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 188 VCHAP-DLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred cccCC-cHHHHHHHHhcccCCCceEEeHH
Confidence 99999 89999999999999999999875
No 137
>PHA03411 putative methyltransferase; Provisional
Probab=98.25 E-value=2.2e-06 Score=77.62 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=66.8
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccc--e-eccccccCCCC--CCccCeeeecccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFG--L-YHDWCESFNTY--PRTYDLLHADHLFST 144 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~--~-~~d~~e~f~~y--p~sFDlVh~~~v~~h 144 (221)
..+|||+|||+|.++..++.+.. ..+++++|.+ .+++.+.++ +.. . ..| +..+ +++||+|.++--|.|
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n-~~~v~~v~~D----~~e~~~~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRL-LPEAEWITSD----VFEFESNEKFDVVISNPPFGK 138 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh-CcCCEEEECc----hhhhcccCCCcEEEEcCCccc
Confidence 46899999999999988877521 1257888886 599988876 322 2 223 2223 378999999988877
Q ss_pred ccc----c---------------HHHHHHHhhhhccCCeEEEEE
Q 027609 145 IKK----S---------------LKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 145 ~~~----d---------------~~~vL~EmdRVLRPGG~~ii~ 169 (221)
... + ....+....++|+|+|.+++.
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 432 1 256778889999999988665
No 138
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.25 E-value=1.6e-06 Score=79.88 Aligned_cols=97 Identities=21% Similarity=0.323 Sum_probs=62.8
Q ss_pred CCCeEEeecCcchH-HHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC---------------ccc--eeccccccCCC--
Q 027609 70 FVRNVMDMRAVYGG-FAAALKDLKVWVMNVVPIESP-DTLPIIYERG---------------LFG--LYHDWCESFNT-- 128 (221)
Q Consensus 70 ~~r~VLD~GcG~G~-faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG---------------l~~--~~~d~~e~f~~-- 128 (221)
...+|||||||-|| +..+.. .++. .++++|.+ .-++-|.+|= ... ...| .|..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~-~~i~--~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D---~f~~~l 135 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQK-AKIK--HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAAD---CFSESL 135 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHH-TT-S--EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEEST---TCCSHH
T ss_pred CCCeEEEecCCCchhHHHHHh-cCCC--EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccc---cccchh
Confidence 68899999999998 444443 3443 57889986 4777777772 111 1112 1211
Q ss_pred ---CC---CccCeeeeccccccccc---cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 129 ---YP---RTYDLLHADHLFSTIKK---SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 129 ---yp---~sFDlVh~~~v~~h~~~---d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
|+ ..||+|-|..+||+-=+ ....+|.-+..-|||||+||.+..+
T Consensus 136 ~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 136 REKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp HCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred hhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 33 59999999988885432 5566899999999999999999766
No 139
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.21 E-value=6.2e-06 Score=72.09 Aligned_cols=131 Identities=11% Similarity=0.103 Sum_probs=76.7
Q ss_pred CCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc---e-eccccccCCC----C-CCcc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG---L-YHDWCESFNT----Y-PRTY 133 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~-~~d~~e~f~~----y-p~sF 133 (221)
...++|||+|||+|.-+.+|+.. +.. ..++.+|.+ +++++|.+. |+-. + ..|..+.++. . ..+|
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~-g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPED-GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 34789999999999755555432 111 146777765 466655443 4422 2 2333332221 1 2689
Q ss_pred CeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh-------------h----hHHHHHHHHH----hcCCeEEEe
Q 027609 134 DLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA-------------E----TIVEVEDLVK----SLHWDVRMI 192 (221)
Q Consensus 134 DlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-------------~----~~~~i~~i~~----~l~W~~~~~ 192 (221)
|+|.+..- ..+...++.++.|.|||||.+++.+.. + ....|+++.+ .=++.+.+.
T Consensus 146 D~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~l 221 (234)
T PLN02781 146 DFAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQI 221 (234)
T ss_pred CEEEECCC----HHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEE
Confidence 99987632 224567888999999999999975321 0 1233444333 334555443
Q ss_pred ecCCCeeEEEEEec
Q 027609 193 YTNDNQGMLCVHKT 206 (221)
Q Consensus 193 ~~~~~e~~l~~~K~ 206 (221)
.. ++++++++|.
T Consensus 222 p~--gdG~~i~~k~ 233 (234)
T PLN02781 222 SI--GDGVTLCRRL 233 (234)
T ss_pred Ee--CCccEEEEEe
Confidence 22 4678888874
No 140
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.19 E-value=7.5e-06 Score=77.11 Aligned_cols=120 Identities=22% Similarity=0.259 Sum_probs=73.1
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Ccc--c--ee-ccccccCCCC---CCccCeee
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLF--G--LY-HDWCESFNTY---PRTYDLLH 137 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~--~--~~-~d~~e~f~~y---p~sFDlVh 137 (221)
.++|||+|||+|+|+.+.+..+.. .++.+|.+ .+++.+.+. |+. . .+ .|..+.+..+ .++||+|.
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~--~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCS--QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 678999999999998776655542 56888876 477666543 442 1 12 2322211122 25899999
Q ss_pred ec-ccccccc-------ccHHHHHHHhhhhccCCeEEEEEcCh------hhHHHHHHHHHhcCCeEEEe
Q 027609 138 AD-HLFSTIK-------KSLKAVVAEVDRILRPDGNLILRDDA------ETIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 138 ~~-~v~~h~~-------~d~~~vL~EmdRVLRPGG~~ii~d~~------~~~~~i~~i~~~l~W~~~~~ 192 (221)
++ -.|..-. .+...++.-..++|+|||.+++..+. .+.+.+.+-+..-+-++++.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 88 2222110 03455566678999999999987653 34455555555555555543
No 141
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=9.3e-06 Score=72.63 Aligned_cols=112 Identities=19% Similarity=0.156 Sum_probs=76.4
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc----eeccccccCCCCCCccCeee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG----LYHDWCESFNTYPRTYDLLH 137 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~----~~~d~~e~f~~yp~sFDlVh 137 (221)
-....+|||.|.|+|.++++|+.. +-+ ..|+..+.. +..+.|.+. |+.. ...|.++.. ++..||.|.
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~-G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~--~~~~vDav~ 168 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPE-GHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI--DEEDVDAVF 168 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCC-ceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc--cccccCEEE
Confidence 345889999999999999999853 212 245666653 466666554 5544 224655532 357999887
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhcCCe
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWD 188 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l~W~ 188 (221)
.. .+ +|..+|.-++.+|+|||.+++=-+. +.+.++-..++..+|-
T Consensus 169 LD-----mp-~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 169 LD-----LP-DPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred Ec-----CC-ChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 66 67 8999999999999999999876543 3344443344455663
No 142
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.15 E-value=1.5e-06 Score=75.32 Aligned_cols=95 Identities=21% Similarity=0.220 Sum_probs=55.4
Q ss_pred ccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---eeccccccCCCCC--Ccc
Q 027609 64 MGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LYHDWCESFNTYP--RTY 133 (221)
Q Consensus 64 L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~~d~~e~f~~yp--~sF 133 (221)
|++++ ..+|||+|||+|-++|.|+..-..+..|+.++.. ...+.|.++ |+.+ ...|-.+ .+| ..|
T Consensus 68 L~l~p--g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~---g~~~~apf 142 (209)
T PF01135_consen 68 LDLKP--GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE---GWPEEAPF 142 (209)
T ss_dssp TTC-T--T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG---TTGGG-SE
T ss_pred HhcCC--CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh---ccccCCCc
Confidence 33444 6899999999999999887641111134566653 355555554 3322 2334332 344 789
Q ss_pred CeeeeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 134 DLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 134 DlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
|.||+.......+ ..+ -+-|||||.+|+--
T Consensus 143 D~I~v~~a~~~ip----~~l---~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 143 DRIIVTAAVPEIP----EAL---LEQLKPGGRLVAPI 172 (209)
T ss_dssp EEEEESSBBSS------HHH---HHTEEEEEEEEEEE
T ss_pred CEEEEeeccchHH----HHH---HHhcCCCcEEEEEE
Confidence 9999997775433 223 35699999999853
No 143
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.12 E-value=4.6e-05 Score=65.41 Aligned_cols=118 Identities=18% Similarity=0.196 Sum_probs=78.0
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH---c-Cccc--ee-ccccccCCCCCCccCeee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE---R-GLFG--LY-HDWCESFNTYPRTYDLLH 137 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e---R-Gl~~--~~-~d~~e~f~~yp~sFDlVh 137 (221)
|...+...++|+|||+|+.+-.++-.+ ....++.++.. +.++.+.. | |+.+ ++ .+--+.|+..| +||.|.
T Consensus 30 L~~~~g~~l~DIGaGtGsi~iE~a~~~-p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiF 107 (187)
T COG2242 30 LRPRPGDRLWDIGAGTGSITIEWALAG-PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIF 107 (187)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEE
Confidence 344457799999999999999887222 23356888864 34544333 2 4333 22 23333344445 899988
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEcC-hhhHHHHHHHHHhcCC-eEE
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD-AETIVEVEDLVKSLHW-DVR 190 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~-~~~~~~i~~i~~~l~W-~~~ 190 (221)
-..- - +...+|.-...-|||||.+|+--. .+....+-+.++.+.+ ++.
T Consensus 108 IGGg-~----~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 108 IGGG-G----NIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIV 157 (187)
T ss_pred ECCC-C----CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEE
Confidence 7765 2 567889999999999999999843 3445556666777888 554
No 144
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.12 E-value=9.1e-06 Score=66.82 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=61.1
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc----cceec-cccccCCCCC-CccCeeeecc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL----FGLYH-DWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl----~~~~~-d~~e~f~~yp-~sFDlVh~~~ 140 (221)
.....+|||+|||+|.++..|++++. .++++|.+ .+++.+.++-- +.+++ |. ..+ +++ ..||.|.++-
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~-~~~-~~~~~~~d~vi~n~ 85 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIHGDA-LKF-DLPKLQPYKVVGNL 85 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEECch-hcC-CccccCCCEEEECC
Confidence 33467899999999999999999853 46888876 48887776621 12333 32 222 245 5699998875
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
-++........++.+. -+.++|++++..
T Consensus 86 Py~~~~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 86 PYNISTPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred CcccHHHHHHHHHhcC--CCcceEEEEEEH
Confidence 5442221333343332 256899998874
No 145
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.08 E-value=8.9e-06 Score=71.49 Aligned_cols=118 Identities=8% Similarity=-0.003 Sum_probs=79.7
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHH-cCcc-----------------ce-eccccccCCCC
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYE-RGLF-----------------GL-YHDWCESFNTY 129 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~e-RGl~-----------------~~-~~d~~e~f~~y 129 (221)
...+||+.|||.|--+.+|+++|.. |+++|.+. .++.+++ .|+. .+ ..|.-+ +++.
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~---V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~-l~~~ 118 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVK---VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN-LPKI 118 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCc---EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcC-CCcc
Confidence 4579999999999999999999854 58888764 5554433 2221 11 123211 2111
Q ss_pred --C-CccCeeeeccccccccc-cHHHHHHHhhhhccCCeEEEEEcC--------hhh---HHHHHHHHHhcCCeEEEe
Q 027609 130 --P-RTYDLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDD--------AET---IVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 130 --p-~sFDlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~--------~~~---~~~i~~i~~~l~W~~~~~ 192 (221)
. +.||+|.=..+|++++. .......-|.++|||||.+++-.- .++ .+++++++ +-.|++...
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf-~~~~~i~~l 195 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNF-SAKIKFELI 195 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhc-cCCceEEEe
Confidence 1 57999999899999986 678999999999999998876521 122 35566554 445666543
No 146
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.05 E-value=2.7e-06 Score=75.96 Aligned_cols=95 Identities=17% Similarity=0.281 Sum_probs=74.1
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc---Cccc--eeccccccCCCCC-CccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER---GLFG--LYHDWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR---Gl~~--~~~d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
.+..++|+||+.|..+..|..++|- .+.-.|-+ .|++-+.+- ++.- .+.| |-|.+|. ++||||.++..+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~i~~~~~v~D--EE~Ldf~ens~DLiisSlsl 147 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPSIETSYFVGD--EEFLDFKENSVDLIISSLSL 147 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCceEEEEEecc--hhcccccccchhhhhhhhhh
Confidence 4778999999999999999999864 45666766 577766544 3332 2344 5577787 999999998666
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
||.+|.-.-|...+-+|||.|.||-+
T Consensus 148 -HW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 148 -HWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred -hhhccCchHHHHHHHhcCCCccchhH
Confidence 47767778899999999999999987
No 147
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.05 E-value=8.8e-06 Score=73.82 Aligned_cols=100 Identities=17% Similarity=0.206 Sum_probs=71.0
Q ss_pred CCeEEeecCcchH----HHHHHhhC-C--CeEEEeccCCCC-CCHHHHHHc--------Ccc----------------c-
Q 027609 71 VRNVMDMRAVYGG----FAAALKDL-K--VWVMNVVPIESP-DTLPIIYER--------GLF----------------G- 117 (221)
Q Consensus 71 ~r~VLD~GcG~G~----faa~L~~~-~--v~vmnv~~~d~~-~~l~~a~eR--------Gl~----------------~- 117 (221)
.-+|...||.+|- +|..|.+. + .+-..|.++|.+ +.|+.|.+= +++ +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3689999999994 66666553 1 123468899986 477655432 000 0
Q ss_pred -------------eeccccccCCCCC--CccCeeeeccccccccc-cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 118 -------------LYHDWCESFNTYP--RTYDLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 118 -------------~~~d~~e~f~~yp--~sFDlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
..||+.+ ++|| +.||+|.|..+|.|+.. ....++..+.+.|+|||++++....
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~--~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLA--KQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred EEEChHHHccCEEEcccCCC--CCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 1245443 1243 89999999999999865 7899999999999999999998754
No 148
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.05 E-value=5.3e-06 Score=72.93 Aligned_cols=107 Identities=23% Similarity=0.263 Sum_probs=73.5
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-----CCHHHHHHcCccc--ee-ccccccCCCC-C-CccCeeeeccc
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-----DTLPIIYERGLFG--LY-HDWCESFNTY-P-RTYDLLHADHL 141 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-----~~l~~a~eRGl~~--~~-~d~~e~f~~y-p-~sFDlVh~~~v 141 (221)
..+|++|||.|.|...++.++-.. |+.+++.. ..++.+.+.|+.+ ++ +|.-+-+..+ | +|.|-|+-.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~-nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~-- 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEK-NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN-- 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCC-CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE--
Confidence 479999999999999999986443 67777762 3667788888833 23 4433333334 4 599999875
Q ss_pred cc-cccc--------cHHHHHHHhhhhccCCeEEEEEcChh-hHHH-HHHH
Q 027609 142 FS-TIKK--------SLKAVVAEVDRILRPDGNLILRDDAE-TIVE-VEDL 181 (221)
Q Consensus 142 ~~-h~~~--------d~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~-i~~i 181 (221)
|. .|+. --..+|.++.|+|+|||.+.+.++++ ..+. ++..
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~ 177 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEV 177 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHH
Confidence 32 1221 22478999999999999999986654 3444 4444
No 149
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.01 E-value=1.3e-05 Score=77.64 Aligned_cols=120 Identities=14% Similarity=0.152 Sum_probs=76.5
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-----CCHHHHHHcCccce--ec-cccccCCCCC-CccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-----DTLPIIYERGLFGL--YH-DWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-----~~l~~a~eRGl~~~--~~-d~~e~f~~yp-~sFDlVh~~ 139 (221)
.....+||+|||.|.|...++.+.-.. |+++++.. ..+..+.++|+.++ +. |...-..-|| +++|-||..
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~-~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDA-LFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCC-CEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 357889999999999999999885332 67777763 24556667777543 21 2110112267 999999876
Q ss_pred cccc-----cccc--cHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHH-HHhcCCeE
Q 027609 140 HLFS-----TIKK--SLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDL-VKSLHWDV 189 (221)
Q Consensus 140 ~v~~-----h~~~--d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i-~~~l~W~~ 189 (221)
.--- |... --..+|.++.|+|||||.+.+.+++ ++.+.+... -..-+++.
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~ 483 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFEI 483 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEe
Confidence 2221 1111 2248899999999999999887554 445554444 33334553
No 150
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.00 E-value=8.4e-05 Score=70.44 Aligned_cols=113 Identities=18% Similarity=0.224 Sum_probs=72.4
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCC--CCC-CccCeee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFN--TYP-RTYDLLH 137 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~--~yp-~sFDlVh 137 (221)
....+|||+|||+|.++..|+++.. .++++|.+ ++++.+.++ |+.. . ..|+.+.+. +++ ++||+|.
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 3457899999999999999998753 57889986 588877654 3322 1 234433222 244 7899998
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEcCh-hhHHHHHHHHHhcCCeEE
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~-~~~~~i~~i~~~l~W~~~ 190 (221)
++-=.. ....++..+.+ ++|++.++++=.. .....+..+. .-.|++.
T Consensus 373 ~dPPr~----g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~-~~gY~l~ 420 (443)
T PRK13168 373 LDPPRA----GAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLV-EAGYRLK 420 (443)
T ss_pred ECcCCc----ChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHh-hCCcEEE
Confidence 762211 23345555555 6999999999444 3445555554 3357764
No 151
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.98 E-value=4.4e-05 Score=67.12 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=64.6
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHHc-------Ccccee-ccccccCCCCCCccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYER-------GLFGLY-HDWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eR-------Gl~~~~-~d~~e~f~~yp~sFDlVh~~ 139 (221)
....+|||+|||+|+|+..|+++|+. .++++|.+. |+...... +..++- .+|.+ +. .|++.|.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~--~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~-~~-----~d~~~~D 145 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAK--EVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPAD-IF-----PDFATFD 145 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCC--EEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhH-cC-----CCceeee
Confidence 35779999999999999999999764 478889864 66542222 111111 13322 11 2444444
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEE-------------------cC---hhhHHHHHHHHHhcCCeEE
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILR-------------------DD---AETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~-------------------d~---~~~~~~i~~i~~~l~W~~~ 190 (221)
-+|.-+ ..+|..|.+.|+| |.+++- |. ...++++...+....|.+.
T Consensus 146 vsfiS~----~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 146 VSFISL----ISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred EEEeeh----HhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 334312 2356677777777 665544 21 2235666666777888764
No 152
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.91 E-value=7.7e-05 Score=70.16 Aligned_cols=115 Identities=15% Similarity=0.158 Sum_probs=72.8
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCC--CC-CccCeee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNT--YP-RTYDLLH 137 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~--yp-~sFDlVh 137 (221)
....+|||+|||+|.|+..|++... .|+++|.+ ++++.+.+. |+.+ . ..|..+.++. +. ++||+|.
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 3457899999999999999988643 46888875 477766653 3322 2 2343322222 33 6799998
Q ss_pred eccccccccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE
Q 027609 138 ADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 138 ~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~ 190 (221)
++---.. -...++.++.+ |+|++.++++-....+.+--+.+..-.|++.
T Consensus 368 ~dPPr~G---~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 368 LDPPRKG---CAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGIT 416 (431)
T ss_pred ECcCCCC---CCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEE
Confidence 7522111 12466666665 8999999998665555444444555567654
No 153
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.89 E-value=1.9e-05 Score=65.85 Aligned_cols=100 Identities=21% Similarity=0.357 Sum_probs=58.3
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCCCCHHHHHHc----C--ccc----eeccccccCC-C-CC-Ccc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYER----G--LFG----LYHDWCESFN-T-YP-RTY 133 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~~~l~~a~eR----G--l~~----~~~d~~e~f~-~-yp-~sF 133 (221)
....++||++|||+|-.+..++.. +.. .|+-+|.++.++.+... + ..+ ...||.+... . .+ +.|
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~--~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAA--RVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-S--EEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hcCCceEEEECCccchhHHHHHhccCCc--eEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 456889999999999555555444 222 35666665544433222 1 111 3458977441 1 23 799
Q ss_pred CeeeeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 134 DLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 134 DlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
|+|.++.|+-.-. ....++.=+.++|+|+|.+++..
T Consensus 121 D~IlasDv~Y~~~-~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 121 DVILASDVLYDEE-LFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp SEEEEES--S-GG-GHHHHHHHHHHHBTT-TTEEEEE
T ss_pred CEEEEecccchHH-HHHHHHHHHHHHhCCCCEEEEEe
Confidence 9999999996433 67788888899999999988874
No 154
>PHA03412 putative methyltransferase; Provisional
Probab=97.85 E-value=4.1e-05 Score=68.08 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=60.2
Q ss_pred CCeEEeecCcchHHHHHHhhCC--CeEEEeccCCCC-CCHHHHHHcCccc--eeccccccCCC--CCCccCeeeeccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESP-DTLPIIYERGLFG--LYHDWCESFNT--YPRTYDLLHADHLFS 143 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~--v~vmnv~~~d~~-~~l~~a~eRGl~~--~~~d~~e~f~~--yp~sFDlVh~~~v~~ 143 (221)
..+|||+|||+|.|+.+++.+- ....+|+++|.. .+++.+.+. +.. .++ ..+.. ++.+||+|.|+==|.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n-~~~~~~~~---~D~~~~~~~~~FDlIIsNPPY~ 125 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI-VPEATWIN---ADALTTEFDTLFDMAISNPPFG 125 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh-ccCCEEEE---cchhcccccCCccEEEECCCCC
Confidence 5689999999999999887641 112367888886 588888755 322 221 12322 347899999883332
Q ss_pred -----cc---c-c--cHHHHHHHhhhhccCCeEE
Q 027609 144 -----TI---K-K--SLKAVVAEVDRILRPDGNL 166 (221)
Q Consensus 144 -----h~---~-~--d~~~vL~EmdRVLRPGG~~ 166 (221)
+. + . -...++....|+|+||+.+
T Consensus 126 ~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~I 159 (241)
T PHA03412 126 KIKTSDFKGKYTGAEFEYKVIERASQIARQGTFI 159 (241)
T ss_pred CccccccCCcccccHHHHHHHHHHHHHcCCCEEE
Confidence 11 0 0 2456888888988888873
No 155
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.82 E-value=8.8e-05 Score=66.82 Aligned_cols=130 Identities=15% Similarity=0.238 Sum_probs=87.4
Q ss_pred cchhhhhhhHHHHHhhhhhcccCCCCCCCeEEeecCcch----HHHHHHhhCCC----eEEEeccCCCC-CCHHHHHH--
Q 027609 44 DFTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYG----GFAAALKDLKV----WVMNVVPIESP-DTLPIIYE-- 112 (221)
Q Consensus 44 ~f~~d~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G----~faa~L~~~~v----~vmnv~~~d~~-~~l~~a~e-- 112 (221)
.|=.|.++|.....+.-..+++-..+..-+|.-+||++| ++|-.|.+... +.++|.++|.+ ..|+.|..
T Consensus 70 ~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~ 149 (268)
T COG1352 70 EFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGI 149 (268)
T ss_pred hhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCC
Confidence 355667777776655333333322225778999999999 46666666542 45688888885 35553321
Q ss_pred -------cCcc-------------c--------------eeccccccCCCCCCccCeeeeccccccccc-cHHHHHHHhh
Q 027609 113 -------RGLF-------------G--------------LYHDWCESFNTYPRTYDLLHADHLFSTIKK-SLKAVVAEVD 157 (221)
Q Consensus 113 -------RGl~-------------~--------------~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~-d~~~vL~Emd 157 (221)
+|++ | -.||+-+.- ++++-||+|.|-.|+..+.. .-..++..++
T Consensus 150 Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~-~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~ 228 (268)
T COG1352 150 YPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDS-PFLGKFDLIFCRNVLIYFDEETQERILRRFA 228 (268)
T ss_pred CChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCc-cccCCCCEEEEcceEEeeCHHHHHHHHHHHH
Confidence 3321 1 124443211 16689999999999997765 6789999999
Q ss_pred hhccCCeEEEEEcChhh
Q 027609 158 RILRPDGNLILRDDAET 174 (221)
Q Consensus 158 RVLRPGG~~ii~d~~~~ 174 (221)
..|+|||++++..+..+
T Consensus 229 ~~L~~gG~LflG~sE~~ 245 (268)
T COG1352 229 DSLKPGGLLFLGHSETI 245 (268)
T ss_pred HHhCCCCEEEEccCccc
Confidence 99999999999976543
No 156
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.82 E-value=5.6e-05 Score=65.71 Aligned_cols=131 Identities=21% Similarity=0.260 Sum_probs=86.5
Q ss_pred eEEeecCcchHHHHHHhhC-CCeEEEeccCCCCC-C----HHHHHHcCccce----eccccccCC-------CCCCccCe
Q 027609 73 NVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPD-T----LPIIYERGLFGL----YHDWCESFN-------TYPRTYDL 135 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~~-~----l~~a~eRGl~~~----~~d~~e~f~-------~yp~sFDl 135 (221)
+||.+|||+|.-+++++.. +- +.--|.|... . ..-+.+.|+.++ .-|.++.-- .++++||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 7999999999999998876 31 2346777642 2 223456676442 223332211 13479999
Q ss_pred eeeccccccccc-cHHHHHHHhhhhccCCeEEEEEcC----------------------hh-----hHHHHHHHHHhcCC
Q 027609 136 LHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDD----------------------AE-----TIVEVEDLVKSLHW 187 (221)
Q Consensus 136 Vh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~----------------------~~-----~~~~i~~i~~~l~W 187 (221)
|.|..++|--+- .-+.+|.+..|+|+|||.|++=-+ ++ -++.+.+++.+-++
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 999988873221 678899999999999999998721 11 15678888888777
Q ss_pred eEEE-eecCCCeeEEEEEe
Q 027609 188 DVRM-IYTNDNQGMLCVHK 205 (221)
Q Consensus 188 ~~~~-~~~~~~e~~l~~~K 205 (221)
+... .+=--..++||.+|
T Consensus 186 ~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 186 ELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred ccCcccccCCCCeEEEEeC
Confidence 7532 11112468888886
No 157
>PLN02672 methionine S-methyltransferase
Probab=97.78 E-value=9.4e-05 Score=77.49 Aligned_cols=119 Identities=12% Similarity=0.094 Sum_probs=77.8
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC----c------------------cc-eeccccccC
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG----L------------------FG-LYHDWCESF 126 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG----l------------------~~-~~~d~~e~f 126 (221)
..+|||+|||+|.++..|+++.-. ..++++|.+ ++++.|.+.- + +. ...||.+.+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 457999999999999999886311 157888886 5777764431 1 11 223554432
Q ss_pred CCCCCccCeeeecc--ccc------------cc-----------c--------c----cHHHHHHHhhhhccCCeEEEEE
Q 027609 127 NTYPRTYDLLHADH--LFS------------TI-----------K--------K----SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 127 ~~yp~sFDlVh~~~--v~~------------h~-----------~--------~----d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
......||+|.|+= +-. |- . + -...++.|..++|||||++++=
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 11112699998762 110 10 0 0 1257788999999999999988
Q ss_pred cChhhHHHHH-HHHHhcCCeEE
Q 027609 170 DDAETIVEVE-DLVKSLHWDVR 190 (221)
Q Consensus 170 d~~~~~~~i~-~i~~~l~W~~~ 190 (221)
-.....+.+. +++.+..|+..
T Consensus 278 iG~~q~~~v~~~l~~~~gf~~~ 299 (1082)
T PLN02672 278 MGGRPGQAVCERLFERRGFRIT 299 (1082)
T ss_pred ECccHHHHHHHHHHHHCCCCee
Confidence 7777778888 68887777653
No 158
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.77 E-value=0.00028 Score=64.40 Aligned_cols=154 Identities=16% Similarity=0.188 Sum_probs=91.4
Q ss_pred hhhhhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCCC-CHHHHHHcC----c---cc
Q 027609 47 ADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPD-TLPIIYERG----L---FG 117 (221)
Q Consensus 47 ~d~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~~-~l~~a~eRG----l---~~ 117 (221)
.+|+.|-..|-. -.+.. .+.....+||+|||+|.++-.|+.. + . .-++++|.+. .+.+|.+.. + +.
T Consensus 128 pETEE~V~~Vid-~~~~~--~~~~~~~ildlgtGSGaIslsll~~L~-~-~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~ 202 (328)
T KOG2904|consen 128 PETEEWVEAVID-ALNNS--EHSKHTHILDLGTGSGAISLSLLHGLP-Q-CTVTAIDVSKAAIKLAKENAQRLKLSGRIE 202 (328)
T ss_pred ccHHHHHHHHHH-HHhhh--hhcccceEEEecCCccHHHHHHHhcCC-C-ceEEEEeccHHHHHHHHHHHHHHhhcCceE
Confidence 567788777754 11212 2333448999999999999988765 2 1 1357777763 666665542 2 33
Q ss_pred eeccc--cccCCCCC---CccCeeeecc--cccc-----------cc------------ccHHHHHHHhhhhccCCeEEE
Q 027609 118 LYHDW--CESFNTYP---RTYDLLHADH--LFST-----------IK------------KSLKAVVAEVDRILRPDGNLI 167 (221)
Q Consensus 118 ~~~d~--~e~f~~yp---~sFDlVh~~~--v~~h-----------~~------------~d~~~vL~EmdRVLRPGG~~i 167 (221)
+.|.- .+.+.++| ..+|++.|+- +++. |. ++...+..=.-|.|+|||++.
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred EEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 44321 12244554 9999998872 2210 11 034456667789999999999
Q ss_pred EEcC-----hhhHHHHHHH-HHhcCCeEEEe-ecCCCeeEEEEEe
Q 027609 168 LRDD-----AETIVEVEDL-VKSLHWDVRMI-YTNDNQGMLCVHK 205 (221)
Q Consensus 168 i~d~-----~~~~~~i~~i-~~~l~W~~~~~-~~~~~e~~l~~~K 205 (221)
+.-. ....+.+-.. .+.--|.+.+. |-.+.+++++..+
T Consensus 283 le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~~Rfv~i~r 327 (328)
T KOG2904|consen 283 LELVERKEHSYLVRIWMISLKDDSNGKAAVVSDFAGRPRFVIIHR 327 (328)
T ss_pred EEecccccCcHHHHHHHHhchhhccchhheeecccCCcceEEEEe
Confidence 9843 3334444333 44444555443 3456788887665
No 159
>PRK00536 speE spermidine synthase; Provisional
Probab=97.72 E-value=0.00012 Score=65.75 Aligned_cols=106 Identities=12% Similarity=0.022 Sum_probs=72.1
Q ss_pred hhhhccc----CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccc-------cC
Q 027609 59 SYLNGMG----INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCE-------SF 126 (221)
Q Consensus 59 ~Y~~~L~----i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e-------~f 126 (221)
.|.++|- +...+-++||=+|.|-|+.++.+++++- +|+-+|.. +.++++++- ++.....+.. .+
T Consensus 57 iYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~-lP~~~~~~~DpRv~l~~~~ 132 (262)
T PRK00536 57 IESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISF-FPHFHEVKNNKNFTHAKQL 132 (262)
T ss_pred hHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHH-CHHHHHhhcCCCEEEeehh
Confidence 5777775 4566789999999999999999999873 45555553 377777664 3221000000 01
Q ss_pred CC-CCCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChhh
Q 027609 127 NT-YPRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAET 174 (221)
Q Consensus 127 ~~-yp~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~ 174 (221)
.. ..++||+|.+...+ +..+...+.|.|+|||.++..-..+.
T Consensus 133 ~~~~~~~fDVIIvDs~~------~~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 133 LDLDIKKYDLIICLQEP------DIHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred hhccCCcCCEEEEcCCC------ChHHHHHHHHhcCCCcEEEECCCCcc
Confidence 11 13789999998643 25677889999999999999865443
No 160
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.69 E-value=0.00015 Score=67.39 Aligned_cols=99 Identities=15% Similarity=0.180 Sum_probs=73.7
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccceeccccccCCCCCCccCeeeeccccccccc-c
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK-S 148 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~-d 148 (221)
.+...+|+|.|.|..+..+..+=-+ +..+..|.+..++.+..-+ +|+-|--|..|-.-| +-|+|.+.-+++||.+ |
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~-ik~infdlp~v~~~a~~~~-~gV~~v~gdmfq~~P-~~daI~mkWiLhdwtDed 253 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPH-IKGINFDLPFVLAAAPYLA-PGVEHVAGDMFQDTP-KGDAIWMKWILHDWTDED 253 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCC-CceeecCHHHHHhhhhhhc-CCcceecccccccCC-CcCeEEEEeecccCChHH
Confidence 4788999999999999998875222 3455555554454444433 554443344565434 4459999999999998 8
Q ss_pred HHHHHHHhhhhccCCeEEEEEcC
Q 027609 149 LKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 149 ~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
-..+|.-..--|+|||.+|+-|.
T Consensus 254 cvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 254 CVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred HHHHHHHHHHhCCCCCEEEEEec
Confidence 99999999999999999999976
No 161
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.66 E-value=9.5e-05 Score=68.65 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=66.9
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHHcC-----c------cc--eecc-----ccccCCCC
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYERG-----L------FG--LYHD-----WCESFNTY 129 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eRG-----l------~~--~~~d-----~~e~f~~y 129 (221)
..++.+||+|||-||=..---+.++ -.++++|..+ -++-|..|= . .. +..| +.+.+ .+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI--~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~-e~ 192 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGI--GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL-EF 192 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcc--cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc-cC
Confidence 3577899999999984433322232 2467777643 455444441 0 01 1112 11222 24
Q ss_pred C-CccCeeeeccccccc-cc--cHHHHHHHhhhhccCCeEEEEEcCh--hhHHHHHHH
Q 027609 130 P-RTYDLLHADHLFSTI-KK--SLKAVVAEVDRILRPDGNLILRDDA--ETIVEVEDL 181 (221)
Q Consensus 130 p-~sFDlVh~~~v~~h~-~~--d~~~vL~EmdRVLRPGG~~ii~d~~--~~~~~i~~i 181 (221)
+ ..||+|-|..+||.- .. .-..+|.-+.+.|||||+||-+-++ .++.++++.
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence 5 559999999888732 21 5567899999999999999998654 334555443
No 162
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00018 Score=62.76 Aligned_cols=92 Identities=22% Similarity=0.259 Sum_probs=61.5
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--eec-cccccCCCCC--CccCee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LYH-DWCESFNTYP--RTYDLL 136 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~~-d~~e~f~~yp--~sFDlV 136 (221)
+.....+||++|||+|-.+|-|++..- .|+.++.. ...+.|..+ |+.+ +.| |-.. -|| ..||.|
T Consensus 69 ~~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~---G~~~~aPyD~I 142 (209)
T COG2518 69 ELKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSK---GWPEEAPYDRI 142 (209)
T ss_pred CCCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCccc---CCCCCCCcCEE
Confidence 344579999999999999998888643 34555543 244444433 4433 222 3222 355 899999
Q ss_pred eeccccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 137 HADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 137 h~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
++.......+ ..|. +=|||||.+++=..
T Consensus 143 ~Vtaaa~~vP----~~Ll---~QL~~gGrlv~PvG 170 (209)
T COG2518 143 IVTAAAPEVP----EALL---DQLKPGGRLVIPVG 170 (209)
T ss_pred EEeeccCCCC----HHHH---HhcccCCEEEEEEc
Confidence 9998887666 2333 57999999998654
No 163
>PRK04148 hypothetical protein; Provisional
Probab=97.63 E-value=0.00015 Score=59.22 Aligned_cols=82 Identities=13% Similarity=0.168 Sum_probs=58.5
Q ss_pred CCCCCeEEeecCcchH-HHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCC--CccCeeeeccccc
Q 027609 68 WSFVRNVMDMRAVYGG-FAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYP--RTYDLLHADHLFS 143 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~-faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp--~sFDlVh~~~v~~ 143 (221)
..+.++|||+|||+|. +|..|.+.|. +|+.+|.+ +.++.+.++|+..+..|+-+ ++.. ..+|+|.+-+.=
T Consensus 14 ~~~~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf~--p~~~~y~~a~liysirpp- 87 (134)
T PRK04148 14 KGKNKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLFN--PNLEIYKNAKLIYSIRPP- 87 (134)
T ss_pred cccCCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCCC--CCHHHHhcCCEEEEeCCC-
Confidence 3345789999999995 9999998885 46888886 58888999988767777643 2233 889999886422
Q ss_pred cccccHHHHHHHhhh
Q 027609 144 TIKKSLKAVVAEVDR 158 (221)
Q Consensus 144 h~~~d~~~vL~EmdR 158 (221)
.++...+.|+.+
T Consensus 88 ---~el~~~~~~la~ 99 (134)
T PRK04148 88 ---RDLQPFILELAK 99 (134)
T ss_pred ---HHHHHHHHHHHH
Confidence 145555555544
No 164
>PLN02476 O-methyltransferase
Probab=97.61 E-value=0.00022 Score=64.54 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=78.7
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHH----HHcCccc---e-eccccccCCCC-----CCc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPII----YERGLFG---L-YHDWCESFNTY-----PRT 132 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a----~eRGl~~---~-~~d~~e~f~~y-----p~s 132 (221)
-.+.++||++|+++|..+.+++.. +-. ..++.+|.. +..++| .+-|+-. + ..|..+.++.+ +.+
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~-G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPES-GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 345789999999999998888763 101 125566653 344444 4445532 1 22332323222 368
Q ss_pred cCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh------------hhHHHHHH----HHHhcCCeEEEeecCC
Q 027609 133 YDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA------------ETIVEVED----LVKSLHWDVRMIYTND 196 (221)
Q Consensus 133 FDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~------------~~~~~i~~----i~~~l~W~~~~~~~~~ 196 (221)
||+|....- ..+...++....+.|||||.+++.+.. .....|++ +...=++.+.+..-
T Consensus 195 FD~VFIDa~----K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPi-- 268 (278)
T PLN02476 195 YDFAFVDAD----KRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPI-- 268 (278)
T ss_pred CCEEEECCC----HHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEe--
Confidence 999987642 225667888888999999999987421 11112333 34445566654432
Q ss_pred CeeEEEEEec
Q 027609 197 NQGMLCVHKT 206 (221)
Q Consensus 197 ~e~~l~~~K~ 206 (221)
++++++++|.
T Consensus 269 gDGl~i~~K~ 278 (278)
T PLN02476 269 GDGMTICRKR 278 (278)
T ss_pred CCeeEEEEEC
Confidence 4678888874
No 165
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.61 E-value=0.00056 Score=61.28 Aligned_cols=134 Identities=18% Similarity=0.211 Sum_probs=85.9
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCC-eEEEeccCCCCCCHHHHH----HcCc----cc-eeccccccCCCCC-CccCee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKV-WVMNVVPIESPDTLPIIY----ERGL----FG-LYHDWCESFNTYP-RTYDLL 136 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v-~vmnv~~~d~~~~l~~a~----eRGl----~~-~~~d~~e~f~~yp-~sFDlV 136 (221)
.....+|||.=.|.|-+|..-+++|+ .|+.+ ..| ++.|++|. .|+| +. +++|..|...+|+ .|||.|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~Vitv-Ekd-p~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITV-EKD-PNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEE-eeC-CCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 44588999999999999999999997 55433 111 12333221 2222 12 3456555566788 889986
Q ss_pred e-eccccccccc-cHHHHHHHhhhhccCCeEEEEEcCh--------hhHHHHHHHHHhcCCeEEEeecCCCeeE-EEEEe
Q 027609 137 H-ADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDA--------ETIVEVEDLVKSLHWDVRMIYTNDNQGM-LCVHK 205 (221)
Q Consensus 137 h-~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~--------~~~~~i~~i~~~l~W~~~~~~~~~~e~~-l~~~K 205 (221)
. =.-=|++-.+ --+.+-.|+.|||||||.++-=..+ +...++.+.+++....+.-.. .|.. ++|+|
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~---~~~~gv~A~k 286 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKV---REALGVVAVK 286 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeee---hhccceEEec
Confidence 4 3333432221 2378899999999999999765432 346788888899998865332 2333 66666
Q ss_pred c
Q 027609 206 T 206 (221)
Q Consensus 206 ~ 206 (221)
+
T Consensus 287 ~ 287 (287)
T COG2521 287 P 287 (287)
T ss_pred C
Confidence 3
No 166
>PLN02823 spermine synthase
Probab=97.59 E-value=0.00062 Score=63.05 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=81.1
Q ss_pred hhhhccc----CCCCCCCeEEeecCcchHHHHHHhhCC-CeEEEeccCCCC-CCHHHHHHcC-cc-------c---eecc
Q 027609 59 SYLNGMG----INWSFVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESP-DTLPIIYERG-LF-------G---LYHD 121 (221)
Q Consensus 59 ~Y~~~L~----i~~~~~r~VLD~GcG~G~faa~L~~~~-v~vmnv~~~d~~-~~l~~a~eRG-l~-------~---~~~d 121 (221)
.|.+.|. +.....++||-+|+|.|+.+..+++.+ +. +++.++.. ++++++.+.- +. . .+.|
T Consensus 88 ~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~--~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~D 165 (336)
T PLN02823 88 VYHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVE--KVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIIND 165 (336)
T ss_pred HHHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCC--eEEEEECCHHHHHHHHHhcccccccccCCceEEEECh
Confidence 3555443 223357899999999999999988863 43 45555553 4778777652 11 0 1222
Q ss_pred ccccCCCC-CCccCeeeeccccccccc------cHHHHHH-HhhhhccCCeEEEEEcC-------hhhHHHHHHHHHhcC
Q 027609 122 WCESFNTY-PRTYDLLHADHLFSTIKK------SLKAVVA-EVDRILRPDGNLILRDD-------AETIVEVEDLVKSLH 186 (221)
Q Consensus 122 ~~e~f~~y-p~sFDlVh~~~v~~h~~~------d~~~vL~-EmdRVLRPGG~~ii~d~-------~~~~~~i~~i~~~l~ 186 (221)
- -.+..- +++||+|.+. +...... --..++. .+.|.|+|||.+++--. .+....+-+-+++.-
T Consensus 166 a-~~~L~~~~~~yDvIi~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF 243 (336)
T PLN02823 166 A-RAELEKRDEKFDVIIGD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVF 243 (336)
T ss_pred h-HHHHhhCCCCccEEEec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhC
Confidence 1 112112 3789999987 2322110 0135666 78999999999987521 222333333333333
Q ss_pred CeEEEeec-----CCCeeEEEEEec
Q 027609 187 WDVRMIYT-----NDNQGMLCVHKT 206 (221)
Q Consensus 187 W~~~~~~~-----~~~e~~l~~~K~ 206 (221)
-.+..... .+.-.+++|.|.
T Consensus 244 ~~v~~y~~~vPsf~~~w~f~~aS~~ 268 (336)
T PLN02823 244 KYVVPYTAHVPSFADTWGWVMASDH 268 (336)
T ss_pred CCEEEEEeecCCCCCceEEEEEeCC
Confidence 33332211 123578888875
No 167
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.57 E-value=5.4e-05 Score=67.41 Aligned_cols=117 Identities=17% Similarity=0.201 Sum_probs=68.6
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHH----HHcCccc---e-eccccc-cCCC-CCCccCe
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPII----YERGLFG---L-YHDWCE-SFNT-YPRTYDL 135 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a----~eRGl~~---~-~~d~~e-~f~~-yp~sFDl 135 (221)
+-..+.+||+.|.|+|+++.+|+..=.....|...+.+ +..+.| .+.|+.. + ..|.|+ .|.. ..+.||.
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence 34458999999999999999997530001134444543 244433 3446643 2 347774 3521 2377887
Q ss_pred eeeccccccccccHHHHHHHhhhhc-cCCeEEEEE-cChhhHHHHHHHHHhcCCeE
Q 027609 136 LHADHLFSTIKKSLKAVVAEVDRIL-RPDGNLILR-DDAETIVEVEDLVKSLHWDV 189 (221)
Q Consensus 136 Vh~~~v~~h~~~d~~~vL~EmdRVL-RPGG~~ii~-d~~~~~~~i~~i~~~l~W~~ 189 (221)
|.-. ++ +|..++.-+.++| ||||.+++= -+.+.+.+.-.-++...|.-
T Consensus 117 vfLD-----lp-~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 117 VFLD-----LP-DPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp EEEE-----SS-SGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred EEEe-----CC-CHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence 6554 78 8999999999999 999999665 44444444444466667754
No 168
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.55 E-value=0.00057 Score=58.24 Aligned_cols=133 Identities=21% Similarity=0.294 Sum_probs=78.6
Q ss_pred hhhhhhHHHHHhhhhhccc-CCCCCCCeEEeecCcch--HHHHHHhhCCCeEEEeccCCCC----CCH-HHHHHcCccc-
Q 027609 47 ADYQHWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYG--GFAAALKDLKVWVMNVVPIESP----DTL-PIIYERGLFG- 117 (221)
Q Consensus 47 ~d~~~W~~~v~~~Y~~~L~-i~~~~~r~VLD~GcG~G--~faa~L~~~~v~vmnv~~~d~~----~~l-~~a~eRGl~~- 117 (221)
.....|.+++-.+ ...++ +..... +++|+|+|-| |+--+++..... ++-+|.. ..+ +++.+=||.+
T Consensus 26 ~~~~~~~~Hi~DS-L~~~~~~~~~~~-~~lDiGSGaGfPGipLaI~~p~~~---~~LvEs~~KK~~FL~~~~~~L~L~nv 100 (184)
T PF02527_consen 26 DPEEIWERHILDS-LALLPFLPDFGK-KVLDIGSGAGFPGIPLAIARPDLQ---VTLVESVGKKVAFLKEVVRELGLSNV 100 (184)
T ss_dssp SHHHHHHHHHHHH-HGGGGCS-CCCS-EEEEETSTTTTTHHHHHHH-TTSE---EEEEESSHHHHHHHHHHHHHHT-SSE
T ss_pred CHHHHHHHHHHHH-HHhhhhhccCCc-eEEecCCCCCChhHHHHHhCCCCc---EEEEeCCchHHHHHHHHHHHhCCCCE
Confidence 4457787777552 22333 333322 7999999999 555555444333 3444442 233 4556667754
Q ss_pred -eeccccccCCCCCCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChhhH---HHHHHHHHhcCCeEE
Q 027609 118 -LYHDWCESFNTYPRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETI---VEVEDLVKSLHWDVR 190 (221)
Q Consensus 118 -~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~---~~i~~i~~~l~W~~~ 190 (221)
+++.-.|. ..++.+||+|.|-. +. .+..++.-+.+.|+|||.+++--..... +..+...+.+.++..
T Consensus 101 ~v~~~R~E~-~~~~~~fd~v~aRA-v~----~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~ 171 (184)
T PF02527_consen 101 EVINGRAEE-PEYRESFDVVTARA-VA----PLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVL 171 (184)
T ss_dssp EEEES-HHH-TTTTT-EEEEEEES-SS----SHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEE
T ss_pred EEEEeeecc-cccCCCccEEEeeh-hc----CHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEe
Confidence 55665564 33669999999874 43 4567888888999999999988655444 444555555656543
No 169
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.55 E-value=0.0014 Score=61.25 Aligned_cols=90 Identities=17% Similarity=0.172 Sum_probs=62.9
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCcccee-ccccccCCCC--CCccCeeeeccccccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLY-HDWCESFNTY--PRTYDLLHADHLFSTI 145 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~-~d~~e~f~~y--p~sFDlVh~~~v~~h~ 145 (221)
.+..++||+||++|||+..|+++|. .|+++|...|-+...+.+.+-.+ .| .|-.. ++.+|++.|..+-
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~l~~~L~~~~~V~h~~~d---~fr~~p~~~~vDwvVcDmve--- 280 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGPMAQSLMDTGQVEHLRAD---GFKFRPPRKNVDWLVCDMVE--- 280 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechhcCHhhhCCCCEEEEecc---CcccCCCCCCCCEEEEeccc---
Confidence 3578999999999999999999986 46778865555544444433222 22 22222 4889999998553
Q ss_pred cccHHHHHHHhhhhccCC--eEEEEE
Q 027609 146 KKSLKAVVAEVDRILRPD--GNLILR 169 (221)
Q Consensus 146 ~~d~~~vL~EmdRVLRPG--G~~ii~ 169 (221)
.|..++.=|.+-|..| ..+|+.
T Consensus 281 --~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 281 --KPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred --CHHHHHHHHHHHHhcCcccEEEEE
Confidence 5778888888888766 456666
No 170
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.54 E-value=0.0002 Score=61.64 Aligned_cols=120 Identities=7% Similarity=0.020 Sum_probs=66.4
Q ss_pred cchhhhhhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc-
Q 027609 44 DFTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG- 117 (221)
Q Consensus 44 ~f~~d~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~- 117 (221)
.++..+..-++.+-+.+.. . ....+|||+|||+|.++..++.+++. .|+.+|.+ +.++.+.+. |+..
T Consensus 32 ~~Rp~~d~v~e~l~~~l~~---~--~~~~~vLDl~~GsG~l~l~~lsr~a~--~V~~vE~~~~a~~~a~~Nl~~~~~~~v 104 (199)
T PRK10909 32 GLRPTTDRVRETLFNWLAP---V--IVDARCLDCFAGSGALGLEALSRYAA--GATLLEMDRAVAQQLIKNLATLKAGNA 104 (199)
T ss_pred CcCcCCHHHHHHHHHHHhh---h--cCCCEEEEcCCCccHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHhCCCcE
Confidence 3556666665555441211 1 12458999999999999876666542 56777764 355544432 3211
Q ss_pred -ee-ccccccCCCCCCccCeeeeccccccccccHHHHHHHh--hhhccCCeEEEEEcCh
Q 027609 118 -LY-HDWCESFNTYPRTYDLLHADHLFSTIKKSLKAVVAEV--DRILRPDGNLILRDDA 172 (221)
Q Consensus 118 -~~-~d~~e~f~~yp~sFDlVh~~~v~~h~~~d~~~vL~Em--dRVLRPGG~~ii~d~~ 172 (221)
++ .|+.+.+.....+||+|.++==+.. .-...++.-+ ..+|+|+|++++....
T Consensus 105 ~~~~~D~~~~l~~~~~~fDlV~~DPPy~~--g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 105 RVVNTNALSFLAQPGTPHNVVFVDPPFRK--GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EEEEchHHHHHhhcCCCceEEEECCCCCC--ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 22 2432222111257999998743211 0112233322 3458999999998544
No 171
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.54 E-value=0.00067 Score=61.54 Aligned_cols=125 Identities=16% Similarity=0.156 Sum_probs=73.7
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--e-eccccccCCC-CCCccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--L-YHDWCESFNT-YPRTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~-~~d~~e~f~~-yp~sFDlVh~~~ 140 (221)
...+|||+|||+|.|+..|++++. .|+++|.+ .+++.+.+. |+.. . ..|..+ +.. ..+.||+|.++-
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~-~~~~~~~~~D~Vv~dP 248 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQ-FATAQGEVPDLVLVNP 248 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHH-HHHhcCCCCeEEEECC
Confidence 357899999999999999999763 56888886 477766543 4421 2 223222 221 236799999872
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEcChhh-HHHHHHHHHhcCCeEEE---ee----cCCCeeEEEEEe
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRDDAET-IVEVEDLVKSLHWDVRM---IY----TNDNQGMLCVHK 205 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~-~~~i~~i~~~l~W~~~~---~~----~~~~e~~l~~~K 205 (221)
=-. .....+.++-.-++|++.++++-.... ...++.+ -.|++.. .| +..=|-|...++
T Consensus 249 Pr~----G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l---~~y~~~~~~~~DmFP~T~HvE~v~~l~r 314 (315)
T PRK03522 249 PRR----GIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL---PGYRIERVQLFDMFPHTAHYEVLTLLVR 314 (315)
T ss_pred CCC----CccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc---cCcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence 211 112233344444789998888855544 3444444 2576642 22 334455555443
No 172
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.54 E-value=0.00011 Score=63.90 Aligned_cols=119 Identities=16% Similarity=0.194 Sum_probs=79.6
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHH-HHcCcccee-------c-------cccccCCCCC--
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPII-YERGLFGLY-------H-------DWCESFNTYP-- 130 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a-~eRGl~~~~-------~-------d~~e~f~~yp-- 130 (221)
....+||+-|||.|--+..|+++|- +|+++|.+. .++.+ .++++.... . =+|..|-.++
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 3467899999999999999999983 579999874 66655 455541111 0 0122222222
Q ss_pred --CccCeeeeccccccccc-cHHHHHHHhhhhccCCeEEEEE--c-------Chhh---HHHHHHHHHhcCCeEEE
Q 027609 131 --RTYDLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILR--D-------DAET---IVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 131 --~sFDlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~--d-------~~~~---~~~i~~i~~~l~W~~~~ 191 (221)
+.||+|.=..+|+-++. .......=|.++|||||.+++- + ..|+ .++|++++. -.|++..
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~ 187 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEE 187 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEE
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEE
Confidence 56999998878876665 7889999999999999994333 1 1222 467777766 7888754
No 173
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.49 E-value=0.00031 Score=63.10 Aligned_cols=100 Identities=10% Similarity=0.171 Sum_probs=63.7
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCc---------c-c------------------
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGL---------F-G------------------ 117 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl---------~-~------------------ 117 (221)
+.....+||+||..|.+++++++. +.- -+.++|.. ..++.|...-- . +
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r--~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPR--RILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccc--eeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 556778999999999999999887 322 35666663 35555544310 0 0
Q ss_pred ------------------eeccccccCCCCC-CccCeeeecccc--ccccc---cHHHHHHHhhhhccCCeEEEEEc
Q 027609 118 ------------------LYHDWCESFNTYP-RTYDLLHADHLF--STIKK---SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 118 ------------------~~~d~~e~f~~yp-~sFDlVh~~~v~--~h~~~---d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.+.+- ..|..+. +-||+|-|-.+- .|+.. -...++.-+.|.|+|||++|+--
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~-~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLES-DDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred cccccccCCcchhcccccEEEec-chhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 00000 0122234 789999986332 13321 56789999999999999999973
No 174
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00035 Score=60.83 Aligned_cols=130 Identities=13% Similarity=0.180 Sum_probs=73.5
Q ss_pred CCeEEeecCcchHHHHHHhhCC-----CeEEEeccCCCCCCHHHHHHcCc---cceeccccccCCCCC-CccCeeeeccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLK-----VWVMNVVPIESPDTLPIIYERGL---FGLYHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~-----v~vmnv~~~d~~~~l~~a~eRGl---~~~~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
..+|+|+||.+|+++..++++- +..+++.|++....+..+ +|- ..+..+.-+ ..+ ..+|+|.|...
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~i--q~d~~~~~~~~~l~~---~l~~~~~DvV~sD~a 120 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFL--QGDITDEDTLEKLLE---ALGGAPVDVVLSDMA 120 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEE--eeeccCccHHHHHHH---HcCCCCcceEEecCC
Confidence 7889999999999988877762 334445555542111111 110 001111111 134 44688876543
Q ss_pred c--------ccccc-cHHHHHHHhhh-hccCCeEEEEEc-----ChhhHHHHHHHHHhcCCeEEE-eecCCCeeEEEEEe
Q 027609 142 F--------STIKK-SLKAVVAEVDR-ILRPDGNLILRD-----DAETIVEVEDLVKSLHWDVRM-IYTNDNQGMLCVHK 205 (221)
Q Consensus 142 ~--------~h~~~-d~~~vL~EmdR-VLRPGG~~ii~d-----~~~~~~~i~~i~~~l~W~~~~-~~~~~~e~~l~~~K 205 (221)
= .|+.. ....+..||.. +|+|||.|++.+ ..+.+..+++.++.++=..-. .-.++.|-+++|.+
T Consensus 121 p~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~~ 200 (205)
T COG0293 121 PNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAKG 200 (205)
T ss_pred CCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEecCccccCCCceEEEEEec
Confidence 2 34433 56666777765 999999999984 344566666655554422211 11345788888875
No 175
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.44 E-value=0.0007 Score=59.50 Aligned_cols=123 Identities=16% Similarity=0.272 Sum_probs=83.0
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccceecccccc-CCCCC-CccCeeeeccccccccc--
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCES-FNTYP-RTYDLLHADHLFSTIKK-- 147 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~-f~~yp-~sFDlVh~~~v~~h~~~-- 147 (221)
-++|||||=....+.. ..+ | .+|+++|....-+-+ ...|..+. +|.-+ +.||+|.|+.|+...++
T Consensus 53 lrlLEVGals~~N~~s--~~~-~-fdvt~IDLns~~~~I-------~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSG-W-FDVTRIDLNSQHPGI-------LQQDFMERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred ceEEeecccCCCCccc--ccC-c-eeeEEeecCCCCCCc-------eeeccccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 6899999975543222 122 3 367888874322211 23444443 33335 89999999999998875
Q ss_pred cHHHHHHHhhhhccCCeE-----EEEEcChh--------hHHHHHHHHHhcCCeEEEeecCCCeeEEEEEe
Q 027609 148 SLKAVVAEVDRILRPDGN-----LILRDDAE--------TIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK 205 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~-----~ii~d~~~--------~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K 205 (221)
.....+.-+.+.|||+|. ++|--+.+ ..+.++.++.+|.....-.....+--...++|
T Consensus 122 ~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~r~ 192 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKSKKLAYWLFRK 192 (219)
T ss_pred HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEecCeEEEEEEee
Confidence 778899999999999999 77765433 14788999999999986554444444455555
No 176
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.40 E-value=0.00071 Score=65.32 Aligned_cols=104 Identities=19% Similarity=0.246 Sum_probs=64.0
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHH----HHHHcCccce--e-ccccccCC-CCCCccCeee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLP----IIYERGLFGL--Y-HDWCESFN-TYPRTYDLLH 137 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~----~a~eRGl~~~--~-~d~~e~f~-~yp~sFDlVh 137 (221)
+.....+||||.||+|+=+.+|++.---...|+..|.+ +-++ -+..-|+..+ . .|- ..+. .++.+||.|.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~-~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDG-RVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCch-hhhhhhchhhcCeEE
Confidence 44567899999999999777776641001135677764 2222 2333355432 2 232 2232 3568899999
Q ss_pred ----eccccccccccH------------------HHHHHHhhhhccCCeEEEEEcCh
Q 027609 138 ----ADHLFSTIKKSL------------------KAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 138 ----~~~v~~h~~~d~------------------~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
|+..-. +..+| ..+|....+.|||||++|.+++.
T Consensus 189 vDaPCSG~G~-~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 189 LDAPCSGEGT-VRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred EcCCCCCCcc-cccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 663211 11122 56788889999999999999874
No 177
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.36 E-value=0.00026 Score=67.94 Aligned_cols=146 Identities=18% Similarity=0.177 Sum_probs=70.4
Q ss_pred CCccCCCCCcccccccCccCCCCcccchhhhhhhHHHHHhhhhhccc--CCCC----CCCeEEeecCcchHHHHHHhhCC
Q 027609 19 WPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMG--INWS----FVRNVMDMRAVYGGFAAALKDLK 92 (221)
Q Consensus 19 WP~rl~~~p~rl~~~~~~~~~~~~~~f~~d~~~W~~~v~~~Y~~~L~--i~~~----~~r~VLD~GcG~G~faa~L~~~~ 92 (221)
+..+|..|-.=|..... +.++|.|+.|.-....--+..+. .|. +... +...|||+|||+|-++...++.+
T Consensus 133 ~~d~Lq~PLqPl~dnL~---s~tYe~fE~D~vKY~~Ye~AI~~-al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~ 208 (448)
T PF05185_consen 133 YEDYLQAPLQPLMDNLE---SQTYEVFEKDPVKYDQYERAIEE-ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAG 208 (448)
T ss_dssp ----EE----TTTS------HHHHHHHCC-HHHHHHHHHHHHH-HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTT
T ss_pred chhhccCCCCCchhhhc---cccHhhHhcCHHHHHHHHHHHHH-HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHH
Confidence 33455555333443111 24688999998765432222122 122 2222 25679999999999875444332
Q ss_pred C---eEEEeccCCCCC----CHH-HHHHcCc---cceeccccccCCCCCCccCeeeeccccccc-cccHHHHHHHhhhhc
Q 027609 93 V---WVMNVVPIESPD----TLP-IIYERGL---FGLYHDWCESFNTYPRTYDLLHADHLFSTI-KKSLKAVVAEVDRIL 160 (221)
Q Consensus 93 v---~vmnv~~~d~~~----~l~-~a~eRGl---~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~-~~d~~~vL~EmdRVL 160 (221)
. ....|.+++.+. +++ .+.+.|+ +-+++.-.+.+. -|...|+|.+--+=+-. .+-.-..|.-.+|.|
T Consensus 209 ~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~-lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfL 287 (448)
T PF05185_consen 209 ARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE-LPEKVDIIVSELLGSFGDNELSPECLDAADRFL 287 (448)
T ss_dssp HHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC-HSS-EEEEEE---BTTBTTTSHHHHHHHGGGGE
T ss_pred HHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC-CCCceeEEEEeccCCccccccCHHHHHHHHhhc
Confidence 1 122456666543 222 2345555 334553333232 35899999987332211 112234789999999
Q ss_pred cCCeEEEEE
Q 027609 161 RPDGNLILR 169 (221)
Q Consensus 161 RPGG~~ii~ 169 (221)
||||.+|=+
T Consensus 288 kp~Gi~IP~ 296 (448)
T PF05185_consen 288 KPDGIMIPS 296 (448)
T ss_dssp EEEEEEESS
T ss_pred CCCCEEeCc
Confidence 999987743
No 178
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.35 E-value=0.00033 Score=60.52 Aligned_cols=129 Identities=17% Similarity=0.185 Sum_probs=75.5
Q ss_pred CCCCeEEeecCcchHHHHHHhhC---CCeEEEeccCCCC-CCHHHH----HHcCccc---e-eccccccCCC----C-CC
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESP-DTLPII----YERGLFG---L-YHDWCESFNT----Y-PR 131 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~---~v~vmnv~~~d~~-~~l~~a----~eRGl~~---~-~~d~~e~f~~----y-p~ 131 (221)
.+-++||.+||++|--+.+|+.. +.. ++.++.. +..++| ..-|+-. + ..|..+.++. . ++
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~---i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGK---ITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSE---EEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccce---EEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCC
Confidence 45789999999999877777753 333 4455543 344444 4446532 2 2343332332 2 26
Q ss_pred ccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChh------------hHHHH----HHHHHhcCCeEEEeecC
Q 027609 132 TYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE------------TIVEV----EDLVKSLHWDVRMIYTN 195 (221)
Q Consensus 132 sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~------------~~~~i----~~i~~~l~W~~~~~~~~ 195 (221)
+||+|....-=. +....+..+-+.|||||.+++.+..- ....| +.+...=+.++.+..-
T Consensus 121 ~fD~VFiDa~K~----~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpi- 195 (205)
T PF01596_consen 121 QFDFVFIDADKR----NYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPI- 195 (205)
T ss_dssp SEEEEEEESTGG----GHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECS-
T ss_pred ceeEEEEccccc----chhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEe-
Confidence 899998775333 45567777889999999999995321 11122 3334444555544322
Q ss_pred CCeeEEEEEec
Q 027609 196 DNQGMLCVHKT 206 (221)
Q Consensus 196 ~~e~~l~~~K~ 206 (221)
++++++++|+
T Consensus 196 -gdGl~l~~K~ 205 (205)
T PF01596_consen 196 -GDGLTLARKR 205 (205)
T ss_dssp -TTEEEEEEE-
T ss_pred -CCeeEEEEEC
Confidence 5689999884
No 179
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.30 E-value=8.9e-05 Score=62.64 Aligned_cols=44 Identities=23% Similarity=0.434 Sum_probs=39.3
Q ss_pred CCCCC-CccCeeeeccccccccc-cHHHHHHHhhhhccCCeEEEEE
Q 027609 126 FNTYP-RTYDLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 126 f~~yp-~sFDlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.++|. +|.|+|.|.+++.|+.- ....+++|.+|+|||||++-+.
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 34565 99999999999999875 7788999999999999999988
No 180
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.30 E-value=0.00041 Score=64.60 Aligned_cols=98 Identities=17% Similarity=0.234 Sum_probs=64.8
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC----CHHHHHHcCcccee---ccccccCCCCC-CccCeeeec-
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD----TLPIIYERGLFGLY---HDWCESFNTYP-RTYDLLHAD- 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~----~l~~a~eRGl~~~~---~d~~e~f~~yp-~sFDlVh~~- 139 (221)
.+.+.|||+|||+|-++..-++.|+. .|.+++.++ ..+++.+.|+-.++ ..--|.+ -.| ...|+|.+.
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~--~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGAR--KVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVSEW 135 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcc--eEEEEechHHHHHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEeehh
Confidence 36889999999999998888888743 466777654 44577777763322 2112222 145 999999876
Q ss_pred -cccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 140 -HLFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 140 -~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
..+-.+.+-..-+|.-=||=|+|||.++=+
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 112112324556777779999999988744
No 181
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.28 E-value=0.00017 Score=65.60 Aligned_cols=92 Identities=15% Similarity=0.175 Sum_probs=61.5
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHHcCccce-eccccccCCCCC-CccCeeeeccccccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYERGLFGL-YHDWCESFNTYP-RTYDLLHADHLFSTIKK 147 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eRGl~~~-~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~ 147 (221)
...++|+|||.|-+ +.-.+. ..+.+-|... .+..+...|-..+ ..| +-.+ ||+ .+||......++||+..
T Consensus 46 gsv~~d~gCGngky---~~~~p~--~~~ig~D~c~~l~~~ak~~~~~~~~~ad-~l~~-p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKY---LGVNPL--CLIIGCDLCTGLLGGAKRSGGDNVCRAD-ALKL-PFREESFDAALSIAVIHHLST 118 (293)
T ss_pred cceeeecccCCccc---CcCCCc--ceeeecchhhhhccccccCCCceeehhh-hhcC-CCCCCccccchhhhhhhhhhh
Confidence 66799999999954 222121 1235555543 4555554444222 233 2223 466 99999999999999875
Q ss_pred --cHHHHHHHhhhhccCCeEEEEE
Q 027609 148 --SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 148 --d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
-...+|.|+-|+|||||...+-
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEE
Confidence 6789999999999999995444
No 182
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.24 E-value=0.00035 Score=62.18 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=44.9
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc---cc-eeccccccCCCCCC-ccCeeeec
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL---FG-LYHDWCESFNTYPR-TYDLLHAD 139 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl---~~-~~~d~~e~f~~yp~-sFDlVh~~ 139 (221)
....+|||+|||+|.++..|++++. .++++|.+ ++++.+.++.- +. ..+|..+ + +++. .+|.|.++
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~-~-~~~~~~~~~vv~N 112 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDALK-V-DLSELQPLKVVAN 112 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhhc-C-CHHHcCcceEEEe
Confidence 3457899999999999999999864 56888875 58888877621 12 2334322 2 2332 25888887
No 183
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.0053 Score=54.82 Aligned_cols=117 Identities=23% Similarity=0.334 Sum_probs=79.9
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC--ccceeccccccCCC--CCCccCeeeeccccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG--LFGLYHDWCESFNT--YPRTYDLLHADHLFS 143 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG--l~~~~~d~~e~f~~--yp~sFDlVh~~~v~~ 143 (221)
.+.+.+||+|+-+|||+--|+++|+. .|.++|.. +++.--.... .+-+-.--...+.+ +..-.|++.|.-.|.
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFI 155 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFI 155 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehh
Confidence 36899999999999999999999875 35666653 3443222221 11110000111111 234678999998886
Q ss_pred cccccHHHHHHHhhhhccCCeEEEEE-------------------c---ChhhHHHHHHHHHhcCCeEEE
Q 027609 144 TIKKSLKAVVAEVDRILRPDGNLILR-------------------D---DAETIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 144 h~~~d~~~vL~EmdRVLRPGG~~ii~-------------------d---~~~~~~~i~~i~~~l~W~~~~ 191 (221)
....+|-.+..+|.|+|.++.- | +..++.++++.+....|.+.-
T Consensus 156 ----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~g 221 (245)
T COG1189 156 ----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKG 221 (245)
T ss_pred ----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEee
Confidence 4568899999999999988876 2 234578899999999999863
No 184
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.18 E-value=0.0012 Score=60.00 Aligned_cols=141 Identities=14% Similarity=0.126 Sum_probs=86.0
Q ss_pred hhhhccc----CCCCCCCeEEeecCcchHHHHHHhhCC-CeEEEeccCCCC-CCHHHHHHcCccceec------------
Q 027609 59 SYLNGMG----INWSFVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESP-DTLPIIYERGLFGLYH------------ 120 (221)
Q Consensus 59 ~Y~~~L~----i~~~~~r~VLD~GcG~G~faa~L~~~~-v~vmnv~~~d~~-~~l~~a~eRGl~~~~~------------ 120 (221)
.|.+++. +..+..|+||=+|-|.|+.++.+++.+ +. .++-++.. +.++++++. ++ ..+
T Consensus 61 ~yhEml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve--~i~~VEID~~Vi~~ar~~-l~-~~~~~~~dpRv~i~i 136 (282)
T COG0421 61 IYHEMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVE--RITMVEIDPAVIELARKY-LP-EPSGGADDPRVEIII 136 (282)
T ss_pred HHHHHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCcc--eEEEEEcCHHHHHHHHHh-cc-CcccccCCCceEEEe
Confidence 3555443 345556899999999999999999986 43 34444442 477777665 32 111
Q ss_pred -cccccCCCCCCccCeeeeccccccccc----cHHHHHHHhhhhccCCeEEEEEcChhh-----HHHHHHHHHhcCCeEE
Q 027609 121 -DWCESFNTYPRTYDLLHADHLFSTIKK----SLKAVVAEVDRILRPDGNLILRDDAET-----IVEVEDLVKSLHWDVR 190 (221)
Q Consensus 121 -d~~e~f~~yp~sFDlVh~~~v~~h~~~----d~~~vL~EmdRVLRPGG~~ii~d~~~~-----~~~i~~i~~~l~W~~~ 190 (221)
|--+-+..++++||+|.+.. ....-. .-..+.....|.|+|+|.++.....+. +..+.+..+++.+...
T Consensus 137 ~Dg~~~v~~~~~~fDvIi~D~-tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~ 215 (282)
T COG0421 137 DDGVEFLRDCEEKFDVIIVDS-TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVP 215 (282)
T ss_pred ccHHHHHHhCCCcCCEEEEcC-CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccccc
Confidence 21111112567999999873 222100 117889999999999999999944333 3355555667744432
Q ss_pred Ee------ecCCCeeEEEEE
Q 027609 191 MI------YTNDNQGMLCVH 204 (221)
Q Consensus 191 ~~------~~~~~e~~l~~~ 204 (221)
.+ ...+-..+.++.
T Consensus 216 ~~~~~ipt~~~g~~~f~~~s 235 (282)
T COG0421 216 PYVAPIPTYPSGFWGFIVAS 235 (282)
T ss_pred cceeccceecCCceEEEEee
Confidence 21 122335777777
No 185
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.12 E-value=0.0041 Score=57.93 Aligned_cols=110 Identities=18% Similarity=0.199 Sum_probs=67.3
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCC-CCCccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNT-YPRTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~-yp~sFDlVh~~~ 140 (221)
...+|||++||+|.|+..|+.++. .++++|.+ .+++.+.+. |+.. .+ .|. +.+.. ....||+|.++=
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~-~~~~~~~~~~~D~vi~DP 308 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS-AKFATAQMSAPELVLVNP 308 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH-HHHHHhcCCCCCEEEECC
Confidence 357899999999999999998763 46888875 467666554 3311 22 232 11211 125699998872
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEcChhh-HHHHHHHHHhcCCeEE
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRDDAET-IVEVEDLVKSLHWDVR 190 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~-~~~i~~i~~~l~W~~~ 190 (221)
=...+. ..++..+. -++|++.++++-.... ...+..+ -.|++.
T Consensus 309 Pr~G~~---~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~ 352 (374)
T TIGR02085 309 PRRGIG---KELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL---SGYQIE 352 (374)
T ss_pred CCCCCc---HHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh---cCceEE
Confidence 222222 34444443 3799999999965544 4556655 358765
No 186
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.09 E-value=0.001 Score=62.97 Aligned_cols=123 Identities=20% Similarity=0.278 Sum_probs=79.8
Q ss_pred hhhhhhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHHc----Cccceec
Q 027609 46 TADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYER----GLFGLYH 120 (221)
Q Consensus 46 ~~d~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eR----Gl~~~~~ 120 (221)
..+|..|-.+-.+ ...+. +....++|||+=|-||+|+.+.+..|+- .|+.+|.++ .|+.+++. |+.+.-|
T Consensus 196 g~kTGfFlDqR~~--R~~l~-~~~~GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~ 270 (393)
T COG1092 196 GLKTGFFLDQRDN--RRALG-ELAAGKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRH 270 (393)
T ss_pred cccceeeHHhHHH--HHHHh-hhccCCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccce
Confidence 4566666444332 11222 1223899999999999999999988873 368888875 78877765 4433223
Q ss_pred ccc--ccCCC---CCC---ccCeeeec-ccccc----c---cccHHHHHHHhhhhccCCeEEEEEcChh
Q 027609 121 DWC--ESFNT---YPR---TYDLLHAD-HLFST----I---KKSLKAVVAEVDRILRPDGNLILRDDAE 173 (221)
Q Consensus 121 d~~--e~f~~---yp~---sFDlVh~~-~v~~h----~---~~d~~~vL~EmdRVLRPGG~~ii~d~~~ 173 (221)
+|- ..|.. +.+ +||+|... =.|.. . ..+..+++.+.-+||+|||.++++.+..
T Consensus 271 ~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 271 RFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred eeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 221 11222 223 99999865 33321 1 1177789999999999999999997754
No 187
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.03 E-value=0.00093 Score=58.95 Aligned_cols=67 Identities=10% Similarity=0.090 Sum_probs=46.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC--c--ccee-ccccccCCCCC-CccCeeeecccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG--L--FGLY-HDWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG--l--~~~~-~d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
...+|||+|||+|.++..|++++. .++++|.+ ++++.+.++- . +.++ .|. ..++ ..||.|.|+--+
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~----~~~~~~~~d~Vv~NlPy 101 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDA----LKVDLPEFNKVVSNLPY 101 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEecc----ccCCchhceEEEEcCCc
Confidence 468899999999999999999854 46788875 4888777652 1 1222 232 2334 468999998554
Q ss_pred c
Q 027609 143 S 143 (221)
Q Consensus 143 ~ 143 (221)
.
T Consensus 102 ~ 102 (258)
T PRK14896 102 Q 102 (258)
T ss_pred c
Confidence 3
No 188
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.00 E-value=0.0029 Score=58.11 Aligned_cols=124 Identities=17% Similarity=0.235 Sum_probs=84.6
Q ss_pred CCCCCeEEeecCcchHHHHHHhh-CCCeEEEeccCCCC-----CCHHHHHHcCccceec-cccccCCC--CC---CccCe
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKD-LKVWVMNVVPIESP-----DTLPIIYERGLFGLYH-DWCESFNT--YP---RTYDL 135 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~-~~v~vmnv~~~d~~-----~~l~~a~eRGl~~~~~-d~~e~f~~--yp---~sFDl 135 (221)
.+.--+||||-||.|.+.-..+. .+.-..++.-.|.+ .-.+.+.+|||.+++. .-..+|.. |. -..+|
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 45677899999999987655443 33212244444432 2456899999976521 11123332 32 55799
Q ss_pred eeeccccccccc-c-HHHHHHHhhhhccCCeEEEEEc--ChhhHHHHHHHHHh----cCCeEEE
Q 027609 136 LHADHLFSTIKK-S-LKAVVAEVDRILRPDGNLILRD--DAETIVEVEDLVKS----LHWDVRM 191 (221)
Q Consensus 136 Vh~~~v~~h~~~-d-~~~vL~EmdRVLRPGG~~ii~d--~~~~~~~i~~i~~~----l~W~~~~ 191 (221)
+..+.++..+++ + ....|.-+.++|.|||++|.+- -|+.++.|...+.+ --|-.+-
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRr 276 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRR 276 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEe
Confidence 999999998886 3 3346888999999999999997 57778888877766 4687654
No 189
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.97 E-value=0.0043 Score=54.33 Aligned_cols=43 Identities=16% Similarity=0.057 Sum_probs=33.4
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER 113 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR 113 (221)
..+..+|||+|||+|.++..|++++.. ++.+|.+ ++++.+.++
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~~---v~~iE~d~~~~~~l~~~ 70 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAKK---VTAIEIDPRLAEILRKL 70 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCCc---EEEEECCHHHHHHHHHH
Confidence 345789999999999999999998643 5677765 477776655
No 190
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=96.84 E-value=0.0034 Score=55.15 Aligned_cols=131 Identities=19% Similarity=0.205 Sum_probs=81.5
Q ss_pred CCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc---e-e-ccccccCCC-CCCccCee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG---L-Y-HDWCESFNT-YPRTYDLL 136 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~-~-~d~~e~f~~-yp~sFDlV 136 (221)
...++||.+|.+.|-=+..|+.. +- -..++.+|.. ++.+.|++. |+-. . . .|+-+-++- ...+||+|
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~-~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPD-DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCC-CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 35899999999999766666543 11 1146777764 455555443 5433 2 2 265555553 45999999
Q ss_pred eeccccccccccHHHHHHHhhhhccCCeEEEEEcC--------------hhhHHHHHHHHHhcCCe----EEEeecCCCe
Q 027609 137 HADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD--------------AETIVEVEDLVKSLHWD----VRMIYTNDNQ 198 (221)
Q Consensus 137 h~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~--------------~~~~~~i~~i~~~l~W~----~~~~~~~~~e 198 (221)
.-..- +.+-..++.+.-+.|||||.+|+... .....+++....-+.++ ..+.- -++
T Consensus 137 FIDad----K~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP--~gD 210 (219)
T COG4122 137 FIDAD----KADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLP--LGD 210 (219)
T ss_pred EEeCC----hhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEe--cCC
Confidence 86643 33445888999999999999998832 12234455555555554 32221 347
Q ss_pred eEEEEEec
Q 027609 199 GMLCVHKT 206 (221)
Q Consensus 199 ~~l~~~K~ 206 (221)
+++++.|.
T Consensus 211 Gl~v~~k~ 218 (219)
T COG4122 211 GLLLSRKR 218 (219)
T ss_pred ceEEEeec
Confidence 88888885
No 191
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=96.71 E-value=0.005 Score=56.83 Aligned_cols=121 Identities=15% Similarity=0.168 Sum_probs=67.5
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHH----c-Cccc---eec--cccccCCC--CC-Cc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYE----R-GLFG---LYH--DWCESFNT--YP-RT 132 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~e----R-Gl~~---~~~--d~~e~f~~--yp-~s 132 (221)
.+...+|||+|||+|.++..|..+ ..| +++++|.+ ..++.|.+ . ++.+ +.+ +....|.. .+ ..
T Consensus 112 ~~~~~~vLDIGtGag~I~~lLa~~~~~~--~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~ 189 (321)
T PRK11727 112 RGANVRVLDIGVGANCIYPLIGVHEYGW--RFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNER 189 (321)
T ss_pred CCCCceEEEecCCccHHHHHHHhhCCCC--EEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCc
Confidence 445688999999999988888665 234 46777774 35554443 2 3422 111 11111222 24 68
Q ss_pred cCeeeecccccccccc----HHHHHHH----------------hhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEe
Q 027609 133 YDLLHADHLFSTIKKS----LKAVVAE----------------VDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 133 FDlVh~~~v~~h~~~d----~~~vL~E----------------mdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~ 192 (221)
||+|.|+==|..-.+. -..-... ....+-+||-+-+-... +.+-..+++...|=+.+.
T Consensus 190 fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~m--i~eS~~~~~~~gwftsmv 267 (321)
T PRK11727 190 FDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRM--IEESKAFAKQVLWFTSLV 267 (321)
T ss_pred eEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHh--hHHHHHHHhhCcEEEEEe
Confidence 9999998444311100 0111111 12445588887666543 444467778888876654
No 192
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.67 E-value=0.016 Score=51.99 Aligned_cols=123 Identities=15% Similarity=0.097 Sum_probs=71.4
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc--Cccceecc-ccccCCC--CC-CccCeeee
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER--GLFGLYHD-WCESFNT--YP-RTYDLLHA 138 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR--Gl~~~~~d-~~e~f~~--yp-~sFDlVh~ 138 (221)
....-++|||+|||+|+-.-+..+. + ..-.++.+|.+ .|++++..= ........ |-..+.. -+ ...|||.+
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~ 108 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIA 108 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEE
Confidence 3446789999999999755555442 2 23356788876 477654331 12221111 1111111 12 34499999
Q ss_pred ccccccccc-cHHHHHHHhhhhccCCeEEEEEcCh-----hhHHHHHHHHHhcCCeEEEe
Q 027609 139 DHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDA-----ETIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 139 ~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~-----~~~~~i~~i~~~l~W~~~~~ 192 (221)
+.+|..+.+ ....++..+-+-+. +++||-|+- ..+.++.+.+....+.+..+
T Consensus 109 s~~L~EL~~~~r~~lv~~LW~~~~--~~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~AP 166 (274)
T PF09243_consen 109 SYVLNELPSAARAELVRSLWNKTA--PVLVLVEPGTPAGFRRIAEARDQLLEKGAHVVAP 166 (274)
T ss_pred ehhhhcCCchHHHHHHHHHHHhcc--CcEEEEcCCChHHHHHHHHHHHHHhhCCCceECC
Confidence 999998874 34444444433344 488888752 34677777776666666544
No 193
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=96.59 E-value=0.0028 Score=57.62 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=44.9
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc---cceeccccccCCCCC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL---FGLYHDWCESFNTYP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl---~~~~~d~~e~f~~yp-~sFDlVh~~~ 140 (221)
...+|||+|||+|.++..|++++. .++.+|.+ ++++.+.++ |+ +.+++. .+..++ ..||+|.++-
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~---Dal~~~~~~~d~VvaNl 109 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEG---DALKTEFPYFDVCVANV 109 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEEC---CHhhhcccccCEEEecC
Confidence 467899999999999999998764 35777775 477776654 21 123331 222344 6789998874
Q ss_pred cc
Q 027609 141 LF 142 (221)
Q Consensus 141 v~ 142 (221)
-.
T Consensus 110 PY 111 (294)
T PTZ00338 110 PY 111 (294)
T ss_pred Cc
Confidence 33
No 194
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.56 E-value=0.012 Score=51.90 Aligned_cols=137 Identities=16% Similarity=0.141 Sum_probs=81.3
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCC-CeEEEeccCCCC-CCHHHHHHcCcc-----------ceec-cccccCCCCCC-c
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESP-DTLPIIYERGLF-----------GLYH-DWCESFNTYPR-T 132 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~-v~vmnv~~~d~~-~~l~~a~eRGl~-----------~~~~-d~~e~f~~yp~-s 132 (221)
..+.++||=+|-|.|+.+..|++.+ +. +++.++.. ..++++++- +. .+++ |-.+-+...++ +
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~--~i~~VEiD~~Vv~~a~~~-f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~ 150 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVE--SITVVEIDPEVVELARKY-FPEFSEGLDDPRVRIIIGDGRKFLKETQEEK 150 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-S--EEEEEES-HHHHHHHHHH-THHHHTTGGSTTEEEEESTHHHHHHTSSST-
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcc--eEEEEecChHHHHHHHHh-chhhccccCCCceEEEEhhhHHHHHhccCCc
Confidence 3369999999999999999999886 43 34444443 366666553 11 1222 21111223455 9
Q ss_pred cCeeeeccccccccc---cHHHHHHHhhhhccCCeEEEEEcC-----hhhHHHHHHHHHhcCCeEEEee------cCCCe
Q 027609 133 YDLLHADHLFSTIKK---SLKAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDVRMIY------TNDNQ 198 (221)
Q Consensus 133 FDlVh~~~v~~h~~~---d~~~vL~EmdRVLRPGG~~ii~d~-----~~~~~~i~~i~~~l~W~~~~~~------~~~~e 198 (221)
||+|.....-..... --..++..+.|.|+|||.+++.-. ......+.+.+++..-.+.... .+..=
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~ 230 (246)
T PF01564_consen 151 YDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWW 230 (246)
T ss_dssp EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEE
T ss_pred ccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccce
Confidence 999987633211110 125889999999999999998732 2345666666777777665432 11223
Q ss_pred eEEEEEecc
Q 027609 199 GMLCVHKTY 207 (221)
Q Consensus 199 ~~l~~~K~~ 207 (221)
.+.+|.|..
T Consensus 231 ~~~~~s~~~ 239 (246)
T PF01564_consen 231 SFASASKDI 239 (246)
T ss_dssp EEEEEESST
T ss_pred eEEEEeCCC
Confidence 567777754
No 195
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=96.56 E-value=0.0053 Score=52.08 Aligned_cols=99 Identities=12% Similarity=0.032 Sum_probs=56.4
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---ee-ccccccCCCC-C-C-ccCeeee
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LY-HDWCESFNTY-P-R-TYDLLHA 138 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~-~d~~e~f~~y-p-~-sFDlVh~ 138 (221)
..+|||++||+|+++..++++++. .++.+|.+ ..++.+.+. |+.+ ++ .|.-+.+..+ . . .||+|..
T Consensus 50 g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 578999999999999999999864 36777764 355544332 3321 12 2321111112 1 2 4788876
Q ss_pred ccccc-cccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 139 DHLFS-TIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 139 ~~v~~-h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
.==+. .+....-..+ .-..+|+++|.+|+....
T Consensus 128 DPPy~~~~~~~~l~~l-~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFNGALQALLELC-ENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CcCCCCCcHHHHHHHH-HHCCCCCCCeEEEEEecC
Confidence 53332 1111222222 225689999988887543
No 196
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.50 E-value=0.0084 Score=54.22 Aligned_cols=60 Identities=15% Similarity=0.402 Sum_probs=47.1
Q ss_pred CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEE--------cC-------h-hhHHHHHHHHHhcCCeEEE
Q 027609 131 RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILR--------DD-------A-ETIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 131 ~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~--------d~-------~-~~~~~i~~i~~~l~W~~~~ 191 (221)
++||.|.+. -|...-.|..+.|..|.++|||||++|=- +. . -..++|..+++++.|+...
T Consensus 164 ~~~d~VvT~-FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 164 GSFDVVVTC-FFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred CcccEEEEE-EEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 499998876 55555559999999999999999977643 21 1 1279999999999999854
No 197
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.49 E-value=0.011 Score=55.17 Aligned_cols=114 Identities=15% Similarity=0.165 Sum_probs=71.8
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccce-eccc-cccCCCCC-CccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFGL-YHDW-CESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~-~~d~-~e~f~~yp-~sFDlVh~~~v 141 (221)
.+.+|||==||||||.-..-=-|+ ++++.|.. .|++-|... |+.+. +..- -....+++ ++||-|.|.-=
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~G~---~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPP 273 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLMGA---RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPP 273 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhcCc---eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCC
Confidence 356899999999999776633343 56888886 476655443 11121 1111 11234588 77999988621
Q ss_pred c---cccc-----ccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE
Q 027609 142 F---STIK-----KSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 142 ~---~h~~-----~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~ 190 (221)
. +-+. +-...+|.++.+||++||++++--+.......+ .+.+++.
T Consensus 274 YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~~~----~~~f~v~ 326 (347)
T COG1041 274 YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHELE----ELGFKVL 326 (347)
T ss_pred CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhhHh----hcCceEE
Confidence 1 1111 125789999999999999999987754444443 4555554
No 198
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.44 E-value=0.0035 Score=54.29 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=61.1
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCC-CCCHHHHHHcC--ccceeccccccCCCCCCccCeeeeccccccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIES-PDTLPIIYERG--LFGLYHDWCESFNTYPRTYDLLHADHLFSTI 145 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~-~~~l~~a~eRG--l~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~ 145 (221)
-..+.|+|+|||+|.|+-..+-.|... |.++|. +++++++.+.. +.|-+-=.+...+.|..-||.+..+==|--+
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~--V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~ 121 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASR--VLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQ 121 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcE--EEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccc
Confidence 357789999999998877766666543 567776 35666655442 2221111122345577889988776444322
Q ss_pred cc--cHHHHHHHhhhhccCCeEEEEEcC-hhhHHHHHHHHHhcCCeE
Q 027609 146 KK--SLKAVVAEVDRILRPDGNLILRDD-AETIVEVEDLVKSLHWDV 189 (221)
Q Consensus 146 ~~--d~~~vL~EmdRVLRPGG~~ii~d~-~~~~~~i~~i~~~l~W~~ 189 (221)
.+ |... |.-.-++- -+|.|=+ ....+-+++.+....-.+
T Consensus 122 ~rhaDr~F-l~~Ale~s----~vVYsiH~a~~~~f~~~~~~~~G~~v 163 (198)
T COG2263 122 RRHADRPF-LLKALEIS----DVVYSIHKAGSRDFVEKFAADLGGTV 163 (198)
T ss_pred cccCCHHH-HHHHHHhh----heEEEeeccccHHHHHHHHHhcCCeE
Confidence 21 4432 22222222 2333322 223455666666665433
No 199
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0025 Score=56.17 Aligned_cols=92 Identities=23% Similarity=0.281 Sum_probs=55.1
Q ss_pred CCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCC-CCCHHHHH----------------HcCccc-eeccccccCCCCC
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIES-PDTLPIIY----------------ERGLFG-LYHDWCESFNTYP 130 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~-~~~l~~a~----------------eRGl~~-~~~d~~e~f~~yp 130 (221)
..-+.||+|.|+|-+++.+.-. +....|..+++. ++.++.+. ++|-+. ++.| |- + -|+
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGD-gr-~-g~~ 158 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGD-GR-K-GYA 158 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCC-cc-c-cCC
Confidence 3778999999999887765422 223334466665 34444332 333222 2334 21 1 244
Q ss_pred --CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 131 --RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 131 --~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+.||-|||...-+ .+.+|+--.|+|||.+++---
T Consensus 159 e~a~YDaIhvGAaa~-------~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 159 EQAPYDAIHVGAAAS-------ELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred ccCCcceEEEccCcc-------ccHHHHHHhhccCCeEEEeec
Confidence 9999999985544 333455567889988887643
No 200
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.35 E-value=0.082 Score=46.38 Aligned_cols=136 Identities=20% Similarity=0.272 Sum_probs=80.1
Q ss_pred hhhhhhHHHHHhhhhhccc-CCCCCCCeEEeecCcchH--HHHHHhhCCCeEEEeccCCCC----CCHH-HHHHcCccc-
Q 027609 47 ADYQHWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYGG--FAAALKDLKVWVMNVVPIESP----DTLP-IIYERGLFG- 117 (221)
Q Consensus 47 ~d~~~W~~~v~~~Y~~~L~-i~~~~~r~VLD~GcG~G~--faa~L~~~~v~vmnv~~~d~~----~~l~-~a~eRGl~~- 117 (221)
...+.|.+|+-.+ ..... +... ..+++|+|+|.|- .--++...+.. ++-+|.. ..|+ ++.+=||.+
T Consensus 45 ~~~e~~~rHilDS-l~~~~~~~~~-~~~~~DIGSGaGfPGipLAI~~p~~~---vtLles~~Kk~~FL~~~~~eL~L~nv 119 (215)
T COG0357 45 DPEELWQRHILDS-LVLLPYLDGK-AKRVLDIGSGAGFPGIPLAIAFPDLK---VTLLESLGKKIAFLREVKKELGLENV 119 (215)
T ss_pred CHHHHHHHHHHHH-hhhhhccccc-CCEEEEeCCCCCCchhhHHHhccCCc---EEEEccCchHHHHHHHHHHHhCCCCe
Confidence 4467888877441 11111 1111 5899999999993 33334444433 4555542 2443 555667754
Q ss_pred -eeccccccCCCCCCc-cCeeeeccccccccccHHHHHHHhhhhccCCeEEE---EEcChhhHHHHHHHHHhcCCeEEEe
Q 027609 118 -LYHDWCESFNTYPRT-YDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLI---LRDDAETIVEVEDLVKSLHWDVRMI 192 (221)
Q Consensus 118 -~~~d~~e~f~~yp~s-FDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~i---i~d~~~~~~~i~~i~~~l~W~~~~~ 192 (221)
+++.-.|.|..- .. ||+|.|-. +. +...++.=....||+||.++ +.-..+.+.+.+.-.....+.+...
T Consensus 120 ~i~~~RaE~~~~~-~~~~D~vtsRA-va----~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 120 EIVHGRAEEFGQE-KKQYDVVTSRA-VA----SLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred EEehhhHhhcccc-cccCcEEEeeh-cc----chHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEE
Confidence 566655644421 23 99998864 43 23344444568999989874 3344556777777788888887654
Q ss_pred e
Q 027609 193 Y 193 (221)
Q Consensus 193 ~ 193 (221)
.
T Consensus 194 ~ 194 (215)
T COG0357 194 F 194 (215)
T ss_pred E
Confidence 3
No 201
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.34 E-value=0.0068 Score=51.96 Aligned_cols=104 Identities=14% Similarity=0.085 Sum_probs=71.2
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccce------eccccccCCCCC-CccCeee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGL------YHDWCESFNTYP-RTYDLLH 137 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~------~~d~~e~f~~yp-~sFDlVh 137 (221)
|++.+...||.+|.|+|-|+.+++++++.--+++.++.+ +....-.++ .++. ..+.-.-+.-++ .-||.|.
T Consensus 44 I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-~p~~~ii~gda~~l~~~l~e~~gq~~D~vi 122 (194)
T COG3963 44 IDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-YPGVNIINGDAFDLRTTLGEHKGQFFDSVI 122 (194)
T ss_pred cCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-CCCccccccchhhHHHHHhhcCCCeeeeEE
Confidence 788889999999999999999999998765566777664 443333332 3321 111111122356 8999999
Q ss_pred eccccccccc-cHHHHHHHhhhhccCCeEEEEEc
Q 027609 138 ADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 138 ~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
|.-=+-.++- --..+|.+..--|++||-++--.
T Consensus 123 S~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 123 SGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred eccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 9854443332 45678888888999999998653
No 202
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.31 E-value=0.0092 Score=53.12 Aligned_cols=100 Identities=19% Similarity=0.259 Sum_probs=72.0
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCc------cceeccccccCCCCC-CccCeeeeccc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGL------FGLYHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl------~~~~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
.+.++||.||-|.|-.+..+-+++.- -...--..++.++..++-|- +-.-.-|-..+++.| +.||-|.-...
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence 57899999999999888888777531 12222223456776666663 223455666677888 99999998744
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
-.|+. |.-.+-+-+-|+|||||.+-+-.
T Consensus 179 ~e~yE-dl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 179 SELYE-DLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hhHHH-HHHHHHHHHhhhcCCCceEEEec
Confidence 36666 78888889999999999987763
No 203
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.25 E-value=0.0051 Score=57.87 Aligned_cols=91 Identities=20% Similarity=0.234 Sum_probs=59.8
Q ss_pred CCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----Cccc--eec-cccccCCCCCCccCeeeeccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----GLFG--LYH-DWCESFNTYPRTYDLLHADHL 141 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~~-d~~e~f~~yp~sFDlVh~~~v 141 (221)
..+|||++||+|.++..++.. ++ -.|+.+|.+ +.++.+.+. |+.. +++ |. +.+..-.+.||+|..+-
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da-~~~l~~~~~fD~V~lDP- 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDA-NALLHEERKFDVVDIDP- 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhH-HHHHhhcCCCCEEEECC-
Confidence 357999999999999998764 42 246777764 466655443 3322 222 32 21211146799999863
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
+ - .+..+|...-+.+||||+++++
T Consensus 134 ~---G-s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 134 F---G-SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred C---C-CcHHHHHHHHHHhcCCCEEEEE
Confidence 3 2 5567777767889999999999
No 204
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.25 E-value=0.016 Score=53.48 Aligned_cols=98 Identities=7% Similarity=0.022 Sum_probs=59.8
Q ss_pred CCeEEeecCcchHHHHHHhh----CCCeEEEeccCCCC-CCHHHHHHcCc----cce-eccccccC-------CC--CCC
Q 027609 71 VRNVMDMRAVYGGFAAALKD----LKVWVMNVVPIESP-DTLPIIYERGL----FGL-YHDWCESF-------NT--YPR 131 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~----~~v~vmnv~~~d~~-~~l~~a~eRGl----~~~-~~d~~e~f-------~~--yp~ 131 (221)
...++|+|||.|.=++.|++ .+.. ...+|+|.+ ++|+.+.++-- +.+ ++..|..| +. .+.
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~-~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKS-VDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCC-ceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 44799999999986554433 2222 257999998 48887766521 111 11111111 11 122
Q ss_pred ccCeeee-ccccccccc-cHHHHHHHhhh-hccCCeEEEEE
Q 027609 132 TYDLLHA-DHLFSTIKK-SLKAVVAEVDR-ILRPDGNLILR 169 (221)
Q Consensus 132 sFDlVh~-~~v~~h~~~-d~~~vL~EmdR-VLRPGG~~ii~ 169 (221)
...++.. ...|..+.. .-..+|.++.+ .|+|||.++|.
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 3444443 345555553 56688999999 99999999998
No 205
>PRK13699 putative methylase; Provisional
Probab=96.13 E-value=0.012 Score=51.38 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=36.8
Q ss_pred HHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE--Ee-e----------cCCCeeEEEEEec
Q 027609 149 LKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR--MI-Y----------TNDNQGMLCVHKT 206 (221)
Q Consensus 149 ~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~--~~-~----------~~~~e~~l~~~K~ 206 (221)
...++.|+.|||||||.+++--....+..+...+....|... +. + ....|-++++.|.
T Consensus 51 ~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~l~~~IiW~K~~~~~~~~~~~~~E~i~~~~k~ 121 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAYVGYRHECAYILAKG 121 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCEEeeEEEEECCCCCCCCCCccceeEEEEEECC
Confidence 357899999999999999874333334445555566666543 11 1 1224777777775
No 206
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.08 E-value=0.0096 Score=52.54 Aligned_cols=96 Identities=19% Similarity=0.258 Sum_probs=52.8
Q ss_pred eEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHc----------C-c--cceeccccccCCCCCCccCeee
Q 027609 73 NVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYER----------G-L--FGLYHDWCESFNTYPRTYDLLH 137 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eR----------G-l--~~~~~d~~e~f~~yp~sFDlVh 137 (221)
.+-|+|||+|||...|... +-+ -+.+.+.. +..+.+.+| | + +++++.-|--|. ||-|-.-.
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdt--LiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~l--pn~f~kgq 138 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDT--LILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFL--PNFFEKGQ 138 (249)
T ss_pred eEEeeccCccchhhhccccCccc--eeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhc--cchhhhcc
Confidence 4789999999999999876 222 23444442 123333333 1 1 334443222222 44444333
Q ss_pred ecccccccc-----c-------cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 138 ADHLFSTIK-----K-------SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 138 ~~~v~~h~~-----~-------d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
.+-.|.-.+ . ---..+.|..=+||+||.++..++.
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 332232122 1 1135788999999999999877543
No 207
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=95.99 E-value=0.012 Score=52.32 Aligned_cols=132 Identities=11% Similarity=0.106 Sum_probs=74.0
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC-CCeEEEeccCCCC-CCHHHH----HHcCccc----eeccccccCCC------CCC
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DTLPII----YERGLFG----LYHDWCESFNT------YPR 131 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a----~eRGl~~----~~~d~~e~f~~------yp~ 131 (221)
...-++||.+|+++|--+.+|+.. +. -..++.++.. +..++| .+-|+.. ...+..+.++. +++
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~-~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPE-DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCC-CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence 445789999999999665555542 11 1134555543 344433 4445432 12333332222 246
Q ss_pred ccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh--------------hhH----HHH----HHHHHhcCCeE
Q 027609 132 TYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA--------------ETI----VEV----EDLVKSLHWDV 189 (221)
Q Consensus 132 sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~--------------~~~----~~i----~~i~~~l~W~~ 189 (221)
+||+|....- +.+....+...-+.|||||.+++.+.. ... ..| +.+...-++.+
T Consensus 156 ~fD~iFiDad----K~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~ 231 (247)
T PLN02589 156 TFDFIFVDAD----KDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEI 231 (247)
T ss_pred cccEEEecCC----HHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEE
Confidence 9999987743 224445666667999999999887420 111 112 23344556666
Q ss_pred EEeecCCCeeEEEEEec
Q 027609 190 RMIYTNDNQGMLCVHKT 206 (221)
Q Consensus 190 ~~~~~~~~e~~l~~~K~ 206 (221)
.+..- ++++++++|.
T Consensus 232 ~llPi--gDGl~l~~k~ 246 (247)
T PLN02589 232 CMLPV--GDGITLCRRI 246 (247)
T ss_pred EEEEe--CCccEEEEEe
Confidence 55432 4678888874
No 208
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=95.92 E-value=0.016 Score=54.65 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=70.8
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHc----Cc-------cceeccccccCCCCCCccCee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER----GL-------FGLYHDWCESFNTYPRTYDLL 136 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eR----Gl-------~~~~~d~~e~f~~yp~sFDlV 136 (221)
....|.|||+|||+|-+...-+..|+. .|..+++++|.+.|+.- .+ +|-+.| . -.|...|+|
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEd----i-eLPEk~Dvi 247 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGAK--KVYAVEASEMAQYARKLVASNNLADRITVIPGKIED----I-ELPEKVDVI 247 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCcc--eEEEEehhHHHHHHHHHHhcCCccceEEEccCcccc----c-cCchhccEE
Confidence 457899999999999866655555654 46788888888866432 01 122222 1 258999999
Q ss_pred eecccccccc-ccHHHHHHHhhhhccCCeEEEEE--cCh--h---hHHHHHHHHHhcCCeEE
Q 027609 137 HADHLFSTIK-KSLKAVVAEVDRILRPDGNLILR--DDA--E---TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 137 h~~~v~~h~~-~d~~~vL~EmdRVLRPGG~~ii~--d~~--~---~~~~i~~i~~~l~W~~~ 190 (221)
.+.-.--.+- +-+-.--.-.+|-|+|.|...=+ |.+ + ..--++..-|++-|--.
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq 309 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQ 309 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhhh
Confidence 8763222122 12222223356999999988644 221 2 23346777788888654
No 209
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=95.88 E-value=0.056 Score=45.39 Aligned_cols=119 Identities=16% Similarity=0.227 Sum_probs=65.6
Q ss_pred CCCCCeEEeecCcchHHHH--HHhhCCCe------EEEeccCCCC-CCHHHHHHc----Cccc---eec-cccccCCCCC
Q 027609 68 WSFVRNVMDMRAVYGGFAA--ALKDLKVW------VMNVVPIESP-DTLPIIYER----GLFG---LYH-DWCESFNTYP 130 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa--~L~~~~v~------vmnv~~~d~~-~~l~~a~eR----Gl~~---~~~-d~~e~f~~yp 130 (221)
+.....|||-=||+|+|.. ++...++. ...+.+.|.. ++++.+.+. |+.+ ... |. ..++..+
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~-~~l~~~~ 104 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA-RELPLPD 104 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G-GGGGGTT
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch-hhccccc
Confidence 3446789999999999884 34444332 1125677775 466665544 3322 222 32 2243234
Q ss_pred CccCeeeecccccc---c----cccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEE
Q 027609 131 RTYDLLHADHLFST---I----KKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 131 ~sFDlVh~~~v~~h---~----~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~ 191 (221)
+++|.|.|+-=+-. . ..-...++.|+.|+|+|...+++.....+ ++.+....|+...
T Consensus 105 ~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~----~~~~~~~~~~~~~ 168 (179)
T PF01170_consen 105 GSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNREL----EKALGLKGWRKRK 168 (179)
T ss_dssp SBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCH----HHHHTSTTSEEEE
T ss_pred CCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH----HHHhcchhhceEE
Confidence 89999999833321 0 11234678999999999666666665533 4444445777653
No 210
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=95.86 E-value=0.0056 Score=55.98 Aligned_cols=70 Identities=19% Similarity=0.136 Sum_probs=46.7
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc-----cceeccccccCCCC-CC---ccCeeee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-----FGLYHDWCESFNTY-PR---TYDLLHA 138 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-----~~~~~d~~e~f~~y-p~---sFDlVh~ 138 (221)
.....++|++||.|+++.++++..-....|.++|.+ ++++.+.++ + +-.+|+....+..+ +. +||.|.+
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~-L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~ 96 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDR-LKPFGRFTLVHGNFSNLKEVLAEGLGKVDGILL 96 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHh-hccCCcEEEEeCCHHHHHHHHHcCCCccCEEEE
Confidence 345689999999999999999873112357999986 699988876 3 22344322222222 22 7898877
Q ss_pred c
Q 027609 139 D 139 (221)
Q Consensus 139 ~ 139 (221)
.
T Consensus 97 D 97 (296)
T PRK00050 97 D 97 (296)
T ss_pred C
Confidence 6
No 211
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.69 E-value=0.0043 Score=56.43 Aligned_cols=102 Identities=22% Similarity=0.329 Sum_probs=63.2
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHHc----Ccc-c----eeccccccCCCC--CCccCeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYER----GLF-G----LYHDWCESFNTY--PRTYDLLH 137 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eR----Gl~-~----~~~d~~e~f~~y--p~sFDlVh 137 (221)
..++|||+=|-+|+|+.+.+..|+. .|+.+|.++ .++.+.+. |+. . +.+|.-+.+.-. .+.||+|.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~--~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAK--EVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTES--EEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 3679999999999999988777764 467888874 77766665 332 1 112311101001 27899998
Q ss_pred ec-ccccc----ccccHHHHHHHhhhhccCCeEEEEEcChh
Q 027609 138 AD-HLFST----IKKSLKAVVAEVDRILRPDGNLILRDDAE 173 (221)
Q Consensus 138 ~~-~v~~h----~~~d~~~vL~EmdRVLRPGG~~ii~d~~~ 173 (221)
+. =.|.. ...+...++.-.-++|+|||+++++.+..
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 76 23321 12266778888899999999999887653
No 212
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=95.49 E-value=0.0074 Score=52.14 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=50.7
Q ss_pred CCCeEEeecCcchHHHHHHhh--CCCeEEEeccCCCC-C----CHHHHHHcCccc---ee-ccccccCCCCCCccCeeee
Q 027609 70 FVRNVMDMRAVYGGFAAALKD--LKVWVMNVVPIESP-D----TLPIIYERGLFG---LY-HDWCESFNTYPRTYDLLHA 138 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~--~~v~vmnv~~~d~~-~----~l~~a~eRGl~~---~~-~d~~e~f~~yp~sFDlVh~ 138 (221)
....|+||-||.|.|+-.+++ ++.. |.+.|.. + +.+-+...++-+ .+ .| |..+.. ...||-|.+
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~---V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D-~~~~~~-~~~~drvim 175 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKR---VYAVDLNPDAVEYLKENIRLNKVENRIEVINGD-AREFLP-EGKFDRVIM 175 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSE---EEEEES-HHHHHHHHHHHHHTT-TTTEEEEES--GGG----TT-EEEEEE
T ss_pred cceEEEEccCCccHHHHHHhhhcCccE---EEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCC-HHHhcC-ccccCEEEE
Confidence 378999999999999999888 4433 4555542 2 223333334433 22 34 333443 589997776
Q ss_pred ccccccccccHHHHHHHhhhhccCCeEEE
Q 027609 139 DHLFSTIKKSLKAVVAEVDRILRPDGNLI 167 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL~EmdRVLRPGG~~i 167 (221)
+ ++..-..+|.+..+++|+||++.
T Consensus 176 ~-----lp~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 176 N-----LPESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred C-----ChHHHHHHHHHHHHHhcCCcEEE
Confidence 5 34333468888999999999875
No 213
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.29 E-value=0.13 Score=45.70 Aligned_cols=98 Identities=18% Similarity=0.300 Sum_probs=61.2
Q ss_pred CCCCCeEEeecCcchHHHHHHhhC----C-CeEEEeccCCCCCCHHHHHHcC-ccceeccccccCCCCC---CccCeeee
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDL----K-VWVMNVVPIESPDTLPIIYERG-LFGLYHDWCESFNTYP---RTYDLLHA 138 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~----~-v~vmnv~~~d~~~~l~~a~eRG-l~~~~~d~~e~f~~yp---~sFDlVh~ 138 (221)
-....+||-+|+.+|+...++.+- | |..+...|....+.+.+|..|- ++.++.|...+- .|. ...|+|.|
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~-~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPE-KYRMLVEMVDVIFQ 149 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGG-GGTTTS--EEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChH-HhhcccccccEEEe
Confidence 345789999999999988877653 3 2333334443346788898885 355777743211 142 68888888
Q ss_pred ccccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 139 DHLFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
. +-+ ++.-.-++.=++.-||+||++++.
T Consensus 150 D-VaQ--p~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 150 D-VAQ--PDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp E--SS--TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c-CCC--hHHHHHHHHHHHhhccCCcEEEEE
Confidence 6 222 223456666777899999999988
No 214
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.21 E-value=0.063 Score=47.22 Aligned_cols=103 Identities=18% Similarity=0.193 Sum_probs=64.7
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhC-C--CeEEEeccCCCC--------CCHHHHHHcCccc--eec-cccccCCCCCC
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDL-K--VWVMNVVPIESP--------DTLPIIYERGLFG--LYH-DWCESFNTYPR 131 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~-~--v~vmnv~~~d~~--------~~l~~a~eRGl~~--~~~-d~~e~f~~yp~ 131 (221)
++. ..+|.|+=-|.|-|++-|... + ..|.+++|.+.. .+-.+++|.++-+ .+. +.- ++. -|.
T Consensus 46 lkp--g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~-A~~-~pq 121 (238)
T COG4798 46 LKP--GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLV-ALG-APQ 121 (238)
T ss_pred cCC--CCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCccc-ccC-CCC
Confidence 555 788999999999999988765 1 267788887761 1223444444322 111 110 111 126
Q ss_pred ccCeeeeccccccc------cccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 132 TYDLLHADHLFSTI------KKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 132 sFDlVh~~~v~~h~------~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
-.|++..++..+.. ...-..+-.++.+.|||||.+.+-|+.
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 66666554333311 227789999999999999999998764
No 215
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.20 E-value=0.027 Score=52.96 Aligned_cols=90 Identities=17% Similarity=0.163 Sum_probs=62.1
Q ss_pred CeEEeecCcchHHHHHHhhC--CCeEEEeccCCCC-CCHHHHHHc----Ccc--ceec-cccccCCCC-CCccCeeeecc
Q 027609 72 RNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESP-DTLPIIYER----GLF--GLYH-DWCESFNTY-PRTYDLLHADH 140 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~--~v~vmnv~~~d~~-~~l~~a~eR----Gl~--~~~~-d~~e~f~~y-p~sFDlVh~~~ 140 (221)
-+|||+-||+|.++...+.+ |+. .|+..|.+ +.++.+.+. ++. .+++ |. ..+... ...||+|...-
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~--~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da-~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVR--EVFANDINPKAVESIKNNVEYNSVENIEVPNEDA-ANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhH-HHHHHHhCCCCCEEEeCC
Confidence 47999999999999999887 442 46777764 455555443 221 1232 32 112112 26799998864
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
| . .+..++...-+.+++||+++++
T Consensus 123 -f---G-s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 -F---G-TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -C---C-CcHHHHHHHHHhcccCCEEEEE
Confidence 4 3 5678999999999999999999
No 216
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.15 E-value=0.0053 Score=54.49 Aligned_cols=90 Identities=14% Similarity=0.228 Sum_probs=62.4
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHHcCcccee--ccccccCCCCCCccCeeeeccccccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYERGLFGLY--HDWCESFNTYPRTYDLLHADHLFSTIKK 147 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eRGl~~~~--~d~~e~f~~yp~sFDlVh~~~v~~h~~~ 147 (221)
-.++||+|+|-|-++..++.. .-.|.+.+.+. |......++. .++ -+|.+ =+=.||+|.|-.++..--
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~rL~kk~y-nVl~~~ew~~----t~~k~dli~clNlLDRc~- 183 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRDRLKKKNY-NVLTEIEWLQ----TDVKLDLILCLNLLDRCF- 183 (288)
T ss_pred CeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHHHHhhcCC-ceeeehhhhh----cCceeehHHHHHHHHhhc-
Confidence 578999999999998877543 11245555553 6655555544 122 23432 013499999987775333
Q ss_pred cHHHHHHHhhhhccC-CeEEEEE
Q 027609 148 SLKAVVAEVDRILRP-DGNLILR 169 (221)
Q Consensus 148 d~~~vL~EmdRVLRP-GG~~ii~ 169 (221)
+|...|.+++-||+| .|.+|+.
T Consensus 184 ~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 184 DPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ChHHHHHHHHHHhccCCCcEEEE
Confidence 799999999999999 9999988
No 217
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.07 E-value=0.26 Score=42.87 Aligned_cols=122 Identities=14% Similarity=0.122 Sum_probs=69.6
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-----CCHHHHHHcCc-cc-eeccccccCCCCCCccCeeeecc--
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-----DTLPIIYERGL-FG-LYHDWCESFNTYPRTYDLLHADH-- 140 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-----~~l~~a~eRGl-~~-~~~d~~e~f~~yp~sFDlVh~~~-- 140 (221)
....+|++|||+|-..+.|++.-..-.-...+|.. -+++-|.-.+. +. +..|....+. +++-|++.-+-
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~--~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLR--NESVDVLVFNPPY 120 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhc--cCCccEEEECCCc
Confidence 36779999999999999888762211112455542 25555554442 22 2233322222 25555544332
Q ss_pred ------------ccccccc--c----HHHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHhcCCeEEEee
Q 027609 141 ------------LFSTIKK--S----LKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVRMIY 193 (221)
Q Consensus 141 ------------v~~h~~~--d----~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~l~W~~~~~~ 193 (221)
.-+-|.. | ...+|.-+.-||-|-|.+++-.... ...+|-+++++-.|.+++..
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAM 192 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEE
Confidence 1112221 1 3455666777889999998875543 24566667888889887553
No 218
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.00 E-value=0.2 Score=44.94 Aligned_cols=133 Identities=22% Similarity=0.274 Sum_probs=74.1
Q ss_pred CCCeEEeecCcch--HHHHHHhhCCCeEEEeccCCCCC---CHHHHHHcCccc----------eeccccccCCC--CCCc
Q 027609 70 FVRNVMDMRAVYG--GFAAALKDLKVWVMNVVPIESPD---TLPIIYERGLFG----------LYHDWCESFNT--YPRT 132 (221)
Q Consensus 70 ~~r~VLD~GcG~G--~faa~L~~~~v~vmnv~~~d~~~---~l~~a~eRGl~~----------~~~d~~e~f~~--yp~s 132 (221)
+..|||.+|+|+| |.++++... .+++-.|.+. .++.+.+++.+. ..-+|.++... ++..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~----~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG----AEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPN 161 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc----ceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCC
Confidence 5789999999998 444454332 1455555542 333333332211 12367665433 4433
Q ss_pred -cCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh--hhHHHHHHHHHh--cCC-eEEEe-ecCCCeeEEEEEe
Q 027609 133 -YDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA--ETIVEVEDLVKS--LHW-DVRMI-YTNDNQGMLCVHK 205 (221)
Q Consensus 133 -FDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~--~~~~~i~~i~~~--l~W-~~~~~-~~~~~e~~l~~~K 205 (221)
||+|.+++|+-+.. .++.++.=|.-.|--+|.+++.... +...+++.+... +.+ ++... .+++++-+.+.++
T Consensus 162 ~~DlilasDvvy~~~-~~e~Lv~tla~ll~~~~~i~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~ 240 (248)
T KOG2793|consen 162 PFDLILASDVVYEEE-SFEGLVKTLAFLLAKDGTIFLAYPLRRDAAWEIEVLLFKKDLKIFDVVQESFFKDQESFRIGRH 240 (248)
T ss_pred cccEEEEeeeeecCC-cchhHHHHHHHHHhcCCeEEEEEecccchHHHHHHHHhhhhhccceeeeEeccCcceeeeeeee
Confidence 99999999996655 6777777777788888866665332 113344443322 222 22221 2344566666655
Q ss_pred cc
Q 027609 206 TY 207 (221)
Q Consensus 206 ~~ 207 (221)
+.
T Consensus 241 ~~ 242 (248)
T KOG2793|consen 241 TV 242 (248)
T ss_pred Ee
Confidence 43
No 219
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=94.97 E-value=0.0055 Score=46.12 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=34.1
Q ss_pred EeecCcchHHHHHHhhC--CCeEEEeccCCCC----CCHHHHHHcCcccee---c-cccccCCCCC-CccCeeeeccccc
Q 027609 75 MDMRAVYGGFAAALKDL--KVWVMNVVPIESP----DTLPIIYERGLFGLY---H-DWCESFNTYP-RTYDLLHADHLFS 143 (221)
Q Consensus 75 LD~GcG~G~faa~L~~~--~v~vmnv~~~d~~----~~l~~a~eRGl~~~~---~-d~~e~f~~yp-~sFDlVh~~~v~~ 143 (221)
|.+|+..|..+..|++. ......+..+|.. ...+.+.+.++...+ . +-.+.++.++ +.||+++-.. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 57898899877776553 1000123444432 244444444554322 1 2112233466 8999999874 22
Q ss_pred cccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 144 TIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 144 h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.+. .....+..+.+.|+|||.+++-|
T Consensus 80 ~~~-~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 SYE-AVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -HH-HHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CHH-HHHHHHHHHHHHcCCCeEEEEeC
Confidence 233 56667788888999999999876
No 220
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=94.96 E-value=0.075 Score=51.44 Aligned_cols=44 Identities=16% Similarity=0.026 Sum_probs=30.5
Q ss_pred CCCeEEeecCcchHHHHHHhhCCC-------eEEEeccCCCC-CCHHHHHHc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKV-------WVMNVVPIESP-DTLPIIYER 113 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v-------~vmnv~~~d~~-~~l~~a~eR 113 (221)
...+|||-+||+|+|..+++++-. ...++.+.|.. ..++.+..+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 356899999999999998876421 23567788875 355555443
No 221
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=94.36 E-value=0.031 Score=47.36 Aligned_cols=99 Identities=19% Similarity=0.225 Sum_probs=56.4
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---ee-ccccccCCCC--C-CccCee
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LY-HDWCESFNTY--P-RTYDLL 136 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~-~d~~e~f~~y--p-~sFDlV 136 (221)
....+|||+=||+|+++-.-++||+. .++-+|.+ +.+..+.+. |+.. ++ .|....+... . ..||+|
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiI 118 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDII 118 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEE
Confidence 35788999999999999999999975 35666654 344444333 2222 11 2321212112 3 899999
Q ss_pred eeccccccccc-c-HHHHHHHhh--hhccCCeEEEEEcCh
Q 027609 137 HADHLFSTIKK-S-LKAVVAEVD--RILRPDGNLILRDDA 172 (221)
Q Consensus 137 h~~~v~~h~~~-d-~~~vL~Emd--RVLRPGG~~ii~d~~ 172 (221)
.++== |.. . ...+|.-+. .+|.++|.+|+-...
T Consensus 119 flDPP---Y~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 119 FLDPP---YAKGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp EE--S---TTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred EECCC---cccchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 88622 222 2 245555554 899999999887543
No 222
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.34 E-value=0.063 Score=47.79 Aligned_cols=98 Identities=21% Similarity=0.260 Sum_probs=61.1
Q ss_pred CCCCCCCeEEeecC--cchHHHHHHh-hCCCeEEEeccCCCC-----CCHHHHHHcCc---ccee-ccccccC----CCC
Q 027609 66 INWSFVRNVMDMRA--VYGGFAAALK-DLKVWVMNVVPIESP-----DTLPIIYERGL---FGLY-HDWCESF----NTY 129 (221)
Q Consensus 66 i~~~~~r~VLD~Gc--G~G~faa~L~-~~~v~vmnv~~~d~~-----~~l~~a~eRGl---~~~~-~d~~e~f----~~y 129 (221)
|+--.-++.||+|. |++.++-+|+ ..+.. |+.+|.. -..++..-.|+ +... .+-+|++ ..+
T Consensus 69 i~~~~ak~~lelGvfTGySaL~~Alalp~dGr---v~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~ 145 (237)
T KOG1663|consen 69 IRLLNAKRTLELGVFTGYSALAVALALPEDGR---VVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADG 145 (237)
T ss_pred HHHhCCceEEEEecccCHHHHHHHHhcCCCce---EEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcC
Confidence 34445789999995 5556665553 22222 3343332 24556666664 2222 2333332 235
Q ss_pred C-CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 130 P-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 130 p-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
+ +|||++... |+..+-.....|.-|.||+||.+++..
T Consensus 146 ~~~tfDfaFvD----adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 146 ESGTFDFAFVD----ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred CCCceeEEEEc----cchHHHHHHHHHHHhhcccccEEEEec
Confidence 5 999998754 577677799999999999999999884
No 223
>PRK11524 putative methyltransferase; Provisional
Probab=93.99 E-value=0.14 Score=45.79 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=24.4
Q ss_pred HHHHHHHhhhhccCCeEEEEEcChhhHHHHHHH
Q 027609 149 LKAVVAEVDRILRPDGNLILRDDAETIVEVEDL 181 (221)
Q Consensus 149 ~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i 181 (221)
...+|.|+.|||||||.+++--....+..+..+
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~~~~~~~~~~~~ 91 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMNSTENMPFIDLY 91 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEcCchhhhHHHHH
Confidence 367999999999999999987555444434333
No 224
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.90 E-value=0.035 Score=47.56 Aligned_cols=124 Identities=17% Similarity=0.252 Sum_probs=74.1
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC----CCHHHHHHcC----ccce----eccccccCCCCC-Cc
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP----DTLPIIYERG----LFGL----YHDWCESFNTYP-RT 132 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~----~~l~~a~eRG----l~~~----~~d~~e~f~~yp-~s 132 (221)
.+....|.||.+|.|+=++|.-|+...+..-.|--.|.. ..++-+..+. +-.. .+-|.. -+.-. ++
T Consensus 25 ~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a-qsq~eq~t 103 (201)
T KOG3201|consen 25 PNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA-QSQQEQHT 103 (201)
T ss_pred hhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh-HHHHhhCc
Confidence 344457899999999999999887664433334334442 1333333332 1111 122222 12234 79
Q ss_pred cCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh--hhHHHHHHHHHhcCCeEEE
Q 027609 133 YDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA--ETIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 133 FDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~--~~~~~i~~i~~~l~W~~~~ 191 (221)
||+|.|+.|+= +.+.-+..+.-+.+.|||.|..++..+. +.+++...........+..
T Consensus 104 FDiIlaADClF-fdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 104 FDIILAADCLF-FDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred ccEEEeccchh-HHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEEe
Confidence 99999998863 2223467788888999999998887553 2355555555555555443
No 225
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=93.86 E-value=0.041 Score=46.86 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=35.1
Q ss_pred CCCCccCeeeecccccccc-----c-----cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 128 TYPRTYDLLHADHLFSTIK-----K-----SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 128 ~yp~sFDlVh~~~v~~h~~-----~-----d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
.|+++||.+-|-+++.|.- + -....|.++.|+|||||.++++-+
T Consensus 59 ~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 59 KYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred HhhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 4889999999988887742 1 224678888999999999999954
No 226
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.82 E-value=0.061 Score=42.71 Aligned_cols=58 Identities=24% Similarity=0.349 Sum_probs=35.5
Q ss_pred ccCeeeeccccc--cccc---cHHHHHHHhhhhccCCeEEEEEcC--------hhhHHHHHHHHHhcCCeE
Q 027609 132 TYDLLHADHLFS--TIKK---SLKAVVAEVDRILRPDGNLILRDD--------AETIVEVEDLVKSLHWDV 189 (221)
Q Consensus 132 sFDlVh~~~v~~--h~~~---d~~~vL~EmdRVLRPGG~~ii~d~--------~~~~~~i~~i~~~l~W~~ 189 (221)
.||+|-|-.+-- |+.. -...++.-|.+.|||||.||+--. ....+.+..-+++++++-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP 71 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRP 71 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----G
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEECh
Confidence 389999865542 4443 455689999999999999999732 122455666677777653
No 227
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=92.80 E-value=0.32 Score=42.72 Aligned_cols=100 Identities=20% Similarity=0.162 Sum_probs=58.7
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHH----HHHcCc-cceeccccccCCCCCCccCeeeec
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPI----IYERGL-FGLYHDWCESFNTYPRTYDLLHAD 139 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~----a~eRGl-~~~~~d~~e~f~~yp~sFDlVh~~ 139 (221)
-+....++|||.|+|+|--+-+-+..|+. .++..|.. ...+. +...|. +...|.-+ ..=|..||+|.++
T Consensus 75 PetVrgkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~---~g~~~~~Dl~Lag 149 (218)
T COG3897 75 PETVRGKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNAAANGVSILFTHADL---IGSPPAFDLLLAG 149 (218)
T ss_pred ccccccceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcchhhccceeEEeeccc---cCCCcceeEEEee
Confidence 35567899999999999544333333432 23444442 22221 222332 44555422 1225999999999
Q ss_pred cccccccc-cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 140 HLFSTIKK-SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 140 ~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
.+|= .+ .-..++.=.+|+...|-.+++.|+.
T Consensus 150 Dlfy--~~~~a~~l~~~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 150 DLFY--NHTEADRLIPWKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred ceec--CchHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 8883 22 2345555556777788888888875
No 228
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=92.36 E-value=0.093 Score=48.68 Aligned_cols=107 Identities=12% Similarity=0.085 Sum_probs=61.5
Q ss_pred eEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCC------CC--------
Q 027609 73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNT------YP-------- 130 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~------yp-------- 130 (221)
+|||++||+|.|+..|++... .|+++|.+ ++++.+.+. |+.. .+ .|.-+.++. ++
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred cEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 599999999999998887632 57888875 577777664 3322 12 121110110 10
Q ss_pred -CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChh-hHHHHHHHHHhcCCeEE
Q 027609 131 -RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 131 -~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~-~~~~i~~i~~~l~W~~~ 190 (221)
..||+|..+==-.- -...++. .+++|++.++++=... ....+..+..+ |++.
T Consensus 277 ~~~~d~v~lDPPR~G---~~~~~l~---~l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~ 330 (353)
T TIGR02143 277 SYNCSTIFVDPPRAG---LDPDTCK---LVQAYERILYISCNPETLKANLEQLSET--HRVE 330 (353)
T ss_pred cCCCCEEEECCCCCC---CcHHHHH---HHHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEE
Confidence 12687766511010 1123333 4556899999995554 45566666544 7765
No 229
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=92.33 E-value=0.37 Score=46.99 Aligned_cols=96 Identities=14% Similarity=0.247 Sum_probs=65.7
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHHcCc-----cce-eccccccCCCCC-CccCeeeeccccc
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYERGL-----FGL-YHDWCESFNTYP-RTYDLLHADHLFS 143 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eRGl-----~~~-~~d~~e~f~~yp-~sFDlVh~~~v~~ 143 (221)
-++|=+|||-=.+.-.|.+-|-. +|+.+|.+. .+.....++. .-+ ..|- . -..|+ .|||+|..-.-+.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~-~-~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDM-D-QLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecc-h-hccCCCcceeEEEecCccc
Confidence 48999999999999999887643 567777753 5555555542 111 1121 1 22477 9999998877776
Q ss_pred cccc---------cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 144 TIKK---------SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 144 h~~~---------d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
++-. .-...+.|+.|||+|||.++.-..
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 6543 123457899999999999876654
No 230
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=92.21 E-value=0.43 Score=46.06 Aligned_cols=102 Identities=22% Similarity=0.330 Sum_probs=62.1
Q ss_pred CCCCCCCeEEeecCcchH---HHHHH-hhCCCeEEEeccCCCC-CCH----HHHHHcCccce---eccccccCC--CCCC
Q 027609 66 INWSFVRNVMDMRAVYGG---FAAAL-KDLKVWVMNVVPIESP-DTL----PIIYERGLFGL---YHDWCESFN--TYPR 131 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~---faa~L-~~~~v~vmnv~~~d~~-~~l----~~a~eRGl~~~---~~d~~e~f~--~yp~ 131 (221)
+++-...+||||=|.+|| +.|+| .+.|+ |.+-|.. +-+ +-+..-|+-++ -+|--| |+ -||.
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~----I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~e-f~~~~~~~ 311 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGV----IFANDSNENRLKSLKANLHRLGVTNTIVSNYDGRE-FPEKEFPG 311 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCce----EEecccchHHHHHHHHHHHHhCCCceEEEccCccc-ccccccCc
Confidence 677789999999999997 44444 44464 3455542 222 23334455443 345322 43 1667
Q ss_pred ccCeee----ecc--ccc------------------cccccHHHHHHHhhhhccCCeEEEEEcChhhH
Q 027609 132 TYDLLH----ADH--LFS------------------TIKKSLKAVVAEVDRILRPDGNLILRDDAETI 175 (221)
Q Consensus 132 sFDlVh----~~~--v~~------------------h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~ 175 (221)
+||=|- |+. +.+ |++ ...|.-.-..+||||++|.|++.=..
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQ---r~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQ---RELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHH---HHHHHHHHhhccCCcEEEEEeeecch
Confidence 999886 665 443 222 34555566789999999999875433
No 231
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=91.98 E-value=0.11 Score=46.30 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=58.5
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhC------CCeEEEeccCCCC-CCHHHHHHc----Cccce-e-ccccccCCC--C--
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDL------KVWVMNVVPIESP-DTLPIIYER----GLFGL-Y-HDWCESFNT--Y-- 129 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~------~v~vmnv~~~d~~-~~l~~a~eR----Gl~~~-~-~d~~e~f~~--y-- 129 (221)
......+|+|-.||+|+|..++.++ .....++.++|.. .+..++.-+ |.... . -..+..|.. +
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence 3445778999999999998887662 0122367788775 355555432 32111 0 001222332 2
Q ss_pred CCccCeeeeccccccc-------------c-------ccHHHHHHHhhhhccCCeEEEEEcChhh
Q 027609 130 PRTYDLLHADHLFSTI-------------K-------KSLKAVVAEVDRILRPDGNLILRDDAET 174 (221)
Q Consensus 130 p~sFDlVh~~~v~~h~-------------~-------~d~~~vL~EmdRVLRPGG~~ii~d~~~~ 174 (221)
...||+|.++-=|... . .....++.-+-+.|++||.+++--+...
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~ 187 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGF 187 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHH
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchh
Confidence 2589999877333211 0 0123467779999999998766655443
No 232
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=91.94 E-value=0.12 Score=47.96 Aligned_cols=108 Identities=14% Similarity=0.132 Sum_probs=62.4
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc--ee-ccccccCCCC--------------
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG--LY-HDWCESFNTY-------------- 129 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~--~~-~d~~e~f~~y-------------- 129 (221)
.+|||++||+|+|+.+|++... .|+++|.+ .+++.+.+. |+.. .+ .|.-+.+..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 4699999999999998887632 46888875 477766654 4322 22 2221111111
Q ss_pred -CCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChhh-HHHHHHHHHhcCCeEE
Q 027609 130 -PRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAET-IVEVEDLVKSLHWDVR 190 (221)
Q Consensus 130 -p~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~-~~~i~~i~~~l~W~~~ 190 (221)
...||+|..+==-.-+ ...++. .+++|++.++++-.... ...+..+.. .|++.
T Consensus 285 ~~~~~D~v~lDPPR~G~---~~~~l~---~l~~~~~ivyvSC~p~tlarDl~~L~~--gY~l~ 339 (362)
T PRK05031 285 KSYNFSTIFVDPPRAGL---DDETLK---LVQAYERILYISCNPETLCENLETLSQ--THKVE 339 (362)
T ss_pred cCCCCCEEEECCCCCCC---cHHHHH---HHHccCCEEEEEeCHHHHHHHHHHHcC--CcEEE
Confidence 1148998876111111 133333 44458999999855544 344666553 67765
No 233
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=91.86 E-value=0.92 Score=42.26 Aligned_cols=106 Identities=20% Similarity=0.277 Sum_probs=63.5
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCC-eEEEeccCCCCC----CHH-HHHHcCccc--e-eccccccCCC-CC--Ccc
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKV-WVMNVVPIESPD----TLP-IIYERGLFG--L-YHDWCESFNT-YP--RTY 133 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v-~vmnv~~~d~~~----~l~-~a~eRGl~~--~-~~d~~e~f~~-yp--~sF 133 (221)
++......||||-+++||=+.+|+..-- ....|++.|.+. .+. -+..-|+.+ + .+|- ..++. ++ ..|
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~-~~~~~~~~~~~~f 230 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA-RRLAELLPGGEKF 230 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc-ccccccccccCcC
Confidence 5566679999999999997777766521 112257888752 232 333335543 2 2331 22332 34 259
Q ss_pred Ceeeec------ccccc-----ccc----------cHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 134 DLLHAD------HLFST-----IKK----------SLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 134 DlVh~~------~v~~h-----~~~----------d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
|-|-+. .++.. |.. --..+|...-++|||||.++.+++.
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 998743 22210 110 2346788889999999999999774
No 234
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.73 E-value=0.17 Score=48.08 Aligned_cols=103 Identities=18% Similarity=0.238 Sum_probs=53.1
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeE-E-EeccCCCCCCHH-HHHH--cCccceeccc-----cccCCCCC--CccC
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWV-M-NVVPIESPDTLP-IIYE--RGLFGLYHDW-----CESFNTYP--RTYD 134 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~v-m-nv~~~d~~~~l~-~a~e--RGl~~~~~d~-----~e~f~~yp--~sFD 134 (221)
....-.+|||+|.|+|+-+-++ .++|- . +++-+..+..+. ++++ +.....-.|| -+..+++| ..|+
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~--n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~yt 187 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWAL--NDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYT 187 (484)
T ss_pred CCcCcchhhccCCCCchhhhhh--cccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceee
Confidence 3456677999999999765554 44541 0 112222232222 1111 1111111122 22233454 8888
Q ss_pred eeeeccccccccc--cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 135 LLHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 135 lVh~~~v~~h~~~--d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
++...+-+-|-.. .....+.-.--+++|||.++|-+.
T Consensus 188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 8876644433221 223344445568999999999974
No 235
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=91.53 E-value=0.56 Score=40.46 Aligned_cols=118 Identities=20% Similarity=0.284 Sum_probs=68.6
Q ss_pred HHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cccc---eec-cccc
Q 027609 54 NVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GLFG---LYH-DWCE 124 (221)
Q Consensus 54 ~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl~~---~~~-d~~e 124 (221)
.+|+++--++|.-......++||+=||+|+++..-++||+-. ++-++.+ ...+++.+. |+.+ +++ |-..
T Consensus 27 drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~--~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~ 104 (187)
T COG0742 27 DRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAAR--VVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR 104 (187)
T ss_pred hHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCce--EEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH
Confidence 356553334443112568899999999999999999999764 4455543 244444443 2212 222 3221
Q ss_pred cCCCCC--CccCeeeeccccc--cccccHHHHHHHhhhhccCCeEEEEEcChh
Q 027609 125 SFNTYP--RTYDLLHADHLFS--TIKKSLKAVVAEVDRILRPDGNLILRDDAE 173 (221)
Q Consensus 125 ~f~~yp--~sFDlVh~~~v~~--h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~ 173 (221)
.+..-. +.||+|...==|. .+.......+.+=..+|+|+|.+++-...+
T Consensus 105 ~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 105 ALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 122223 3499998874443 111122333334778999999999986543
No 236
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.46 E-value=2.7 Score=37.31 Aligned_cols=119 Identities=16% Similarity=0.302 Sum_probs=73.8
Q ss_pred hhhhhhhHHHHHhh---hhhccc-CCCCCCCeEEeecCcchHHHHHHhhC---C-CeEEEeccCCCCCCHHHHHHcC-cc
Q 027609 46 TADYQHWKNVVSKS---YLNGMG-INWSFVRNVMDMRAVYGGFAAALKDL---K-VWVMNVVPIESPDTLPIIYERG-LF 116 (221)
Q Consensus 46 ~~d~~~W~~~v~~~---Y~~~L~-i~~~~~r~VLD~GcG~G~faa~L~~~---~-v~vmnv~~~d~~~~l~~a~eRG-l~ 116 (221)
....+.|.-+-++. -...|. +.-....+||=+|+.+|+...+..+- | +..+.++|.-..+.|.++.+|- ++
T Consensus 48 ~~eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~ 127 (231)
T COG1889 48 GEEYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNII 127 (231)
T ss_pred CcceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCce
Confidence 34567785444432 222333 33345889999999999988877663 4 3444445544456888888885 45
Q ss_pred ceeccccccCCC-CC---CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 117 GLYHDWCESFNT-YP---RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 117 ~~~~d~~e~f~~-yp---~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.++.|. ++|- |. ...|+|.+. +=+ ++.-+-+..-++.-||+||++++.
T Consensus 128 PIL~DA--~~P~~Y~~~Ve~VDviy~D-VAQ--p~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 128 PILEDA--RKPEKYRHLVEKVDVIYQD-VAQ--PNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred eeeccc--CCcHHhhhhcccccEEEEe-cCC--chHHHHHHHHHHHhcccCCeEEEE
Confidence 677773 2221 32 556777765 222 212344556679999999988887
No 237
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=91.45 E-value=0.19 Score=41.49 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=22.0
Q ss_pred ccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 145 IKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 145 ~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
|.+....++.|+.|||||||.+++--.
T Consensus 31 y~~~~~~~~~~~~rvLk~~g~~~i~~~ 57 (231)
T PF01555_consen 31 YLEWMEEWLKECYRVLKPGGSIFIFID 57 (231)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred HHHHHHHHHHHHHhhcCCCeeEEEEec
Confidence 443678999999999999999988733
No 238
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=91.37 E-value=0.13 Score=40.18 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=24.4
Q ss_pred eEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHH
Q 027609 73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLP 108 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~ 108 (221)
.|||+|||.|.++..++..+.. ..+..++.. .+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~-~~v~~~E~~~~~~~ 36 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAE-GRVIAFEPLPDAYE 36 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCC-CEEEEEecCHHHHH
Confidence 4899999999999998877432 145666653 3444
No 239
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=91.29 E-value=0.23 Score=39.72 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=31.0
Q ss_pred CCCCeEEeecCcchHHHHHHhh-----CCCeEEEeccCCCC-CCHHHHHHc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKD-----LKVWVMNVVPIESP-DTLPIIYER 113 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~-----~~v~vmnv~~~d~~-~~l~~a~eR 113 (221)
.....|+|+|||-|-++..|+. . ...+|.++|.. ..++.+.+|
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHH
Confidence 5688999999999999999988 4 22356777774 345544444
No 240
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=91.27 E-value=0.41 Score=44.00 Aligned_cols=99 Identities=16% Similarity=0.084 Sum_probs=59.2
Q ss_pred CCCeEEeecCcc-hHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccceec-----cccccCCCC-C-CccCeeeec
Q 027609 70 FVRNVMDMRAVY-GGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFGLYH-----DWCESFNTY-P-RTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~-G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~-----d~~e~f~~y-p-~sFDlVh~~ 139 (221)
...+||..|||. |.+++.+++. ++. .+..++.+ +.++.+.+++-...+. ++.+.+..+ + +.+|+|.-.
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~--~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAE--RVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 357899999987 7777777665 543 24444443 4777777773112221 121212122 2 478887543
Q ss_pred -----------cccccc---cccHHHHHHHhhhhccCCeEEEEEc
Q 027609 140 -----------HLFSTI---KKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 140 -----------~v~~h~---~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
++..|. ..++...+.++.|.|+|+|.+++-.
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 111222 1156778999999999999998864
No 241
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=90.90 E-value=0.52 Score=44.13 Aligned_cols=59 Identities=17% Similarity=0.367 Sum_probs=46.6
Q ss_pred ccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEE--------cChh---------hHHHHHHHHHhcCCeEEE
Q 027609 132 TYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILR--------DDAE---------TIVEVEDLVKSLHWDVRM 191 (221)
Q Consensus 132 sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~--------d~~~---------~~~~i~~i~~~l~W~~~~ 191 (221)
+||+|... -|....+|.-+.|.-+.-||+|||++|=- |.+. ..+.+..+++.+.|++..
T Consensus 259 ~~d~VvTc-fFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k 334 (369)
T KOG2798|consen 259 SYDVVVTC-FFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK 334 (369)
T ss_pred ccceEEEE-EEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence 59998876 45555559999999999999999998843 3222 268899999999999853
No 242
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=90.71 E-value=1.2 Score=39.07 Aligned_cols=131 Identities=17% Similarity=0.225 Sum_probs=63.0
Q ss_pred CCCeEEeecCcchHHHHHHhhC----C-CeEEEeccCCCCCCHHHHHHcCc--cceeccccccCCCCC-CccCeeeeccc
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL----K-VWVMNVVPIESPDTLPIIYERGL--FGLYHDWCESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~----~-v~vmnv~~~d~~~~l~~a~eRGl--~~~~~d~~e~f~~yp-~sFDlVh~~~v 141 (221)
+..+|||+||.+|++..--.++ | |..+++.++..++-.-++.-.-+ +.++...-|. .| +..|+|.+...
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~---lp~r~VdvVlSDMa 145 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEA---LPNRPVDVVLSDMA 145 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHh---CCCCcccEEEeccC
Confidence 3778999999999988776665 1 11112222221111000000000 1111111122 24 66777765532
Q ss_pred --------cccccc-cHH-HHHHHhhhhccCCeEEEEE-----cChhhHHHHHHHHHhcCCeEEEee---cCCCeeEEEE
Q 027609 142 --------FSTIKK-SLK-AVVAEVDRILRPDGNLILR-----DDAETIVEVEDLVKSLHWDVRMIY---TNDNQGMLCV 203 (221)
Q Consensus 142 --------~~h~~~-d~~-~vL~EmdRVLRPGG~~ii~-----d~~~~~~~i~~i~~~l~W~~~~~~---~~~~e~~l~~ 203 (221)
..|+.. +.= .+|.=.--.|+|+|.+++. +......++++.+..++= ..++ .++.|..|+|
T Consensus 146 pnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~--vKP~Asr~eS~E~y~v~ 223 (232)
T KOG4589|consen 146 PNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVKK--VKPDASRDESAETYLVC 223 (232)
T ss_pred CCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcEe--eCCccccccccceeeee
Confidence 224332 111 1222222346699999987 334445555555443321 1112 4568999999
Q ss_pred Ee
Q 027609 204 HK 205 (221)
Q Consensus 204 ~K 205 (221)
.+
T Consensus 224 ~~ 225 (232)
T KOG4589|consen 224 LN 225 (232)
T ss_pred ee
Confidence 87
No 243
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=90.28 E-value=0.18 Score=45.28 Aligned_cols=63 Identities=17% Similarity=0.357 Sum_probs=43.8
Q ss_pred CCccCeeeeccccccccc---cHHHHHHHhhhhccCCeEEEEEcCh---------------h-hHHHHHHHHHhcCCeEE
Q 027609 130 PRTYDLLHADHLFSTIKK---SLKAVVAEVDRILRPDGNLILRDDA---------------E-TIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 130 p~sFDlVh~~~v~~h~~~---d~~~vL~EmdRVLRPGG~~ii~d~~---------------~-~~~~i~~i~~~l~W~~~ 190 (221)
|..||+|.+..|+.-.-. .-..++.-+-+.|||||.||+...- . .-+.|++-++.-...+.
T Consensus 156 p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~ 235 (256)
T PF01234_consen 156 PPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIE 235 (256)
T ss_dssp -SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEE
T ss_pred ccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEE
Confidence 456999999988863332 5678899999999999999998321 1 13556666666666665
Q ss_pred Ee
Q 027609 191 MI 192 (221)
Q Consensus 191 ~~ 192 (221)
..
T Consensus 236 ~~ 237 (256)
T PF01234_consen 236 DL 237 (256)
T ss_dssp EE
T ss_pred ec
Confidence 43
No 244
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=88.39 E-value=1.5 Score=44.38 Aligned_cols=77 Identities=12% Similarity=0.089 Sum_probs=41.1
Q ss_pred EeccCCCC-CCHHHHHHc----Cccc---e-eccccccCCCCC-CccCeeeeccccc-ccc--ccHHHHHHH---hhhhc
Q 027609 97 NVVPIESP-DTLPIIYER----GLFG---L-YHDWCESFNTYP-RTYDLLHADHLFS-TIK--KSLKAVVAE---VDRIL 160 (221)
Q Consensus 97 nv~~~d~~-~~l~~a~eR----Gl~~---~-~~d~~e~f~~yp-~sFDlVh~~~v~~-h~~--~d~~~vL~E---mdRVL 160 (221)
.++++|.+ .+++.|.+. |+.+ + ..|+.+--.+++ ++||+|.|+-=+. .+. .+...+-.+ +-|.+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~ 337 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ 337 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence 46788875 577766655 5532 2 234433112234 6899999982221 111 122333333 34444
Q ss_pred cCCeEEEEEcChh
Q 027609 161 RPDGNLILRDDAE 173 (221)
Q Consensus 161 RPGG~~ii~d~~~ 173 (221)
.||+.+++-..++
T Consensus 338 ~~g~~~~llt~~~ 350 (702)
T PRK11783 338 FGGWNAALFSSSP 350 (702)
T ss_pred CCCCeEEEEeCCH
Confidence 4998887766654
No 245
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=87.98 E-value=1.7 Score=38.04 Aligned_cols=90 Identities=11% Similarity=0.152 Sum_probs=54.1
Q ss_pred CCCeEEeecCc-chHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccceecccc----ccCCCCC-CccCeeeeccc
Q 027609 70 FVRNVMDMRAV-YGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFGLYHDWC----ESFNTYP-RTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG-~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~----e~f~~yp-~sFDlVh~~~v 141 (221)
...+||..||| .|.++..+++. |+.+ +.++.+ +..+.+.+.|....+.... +.+...+ +.+|++....
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V---~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~- 240 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAV---IAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV- 240 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEE---EEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECC-
Confidence 35688888876 47777777664 6554 333433 4667777777533332211 0010123 6788876421
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.....+.++.|.|+|+|.++.-
T Consensus 241 ------g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 241 ------GTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred ------CCHHHHHHHHHHhhcCCEEEEE
Confidence 1246788999999999999875
No 246
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=87.79 E-value=2 Score=39.64 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=72.9
Q ss_pred CCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-----CCHHHHHHcCccc---eec-cccccCCCCC---CccC
Q 027609 67 NWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-----DTLPIIYERGLFG---LYH-DWCESFNTYP---RTYD 134 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-----~~l~~a~eRGl~~---~~~-d~~e~f~~yp---~sFD 134 (221)
+-.....|+.-|.|+|++.-+++..=.....+...|.+ ..++-=++.|+.. ++| |.|. +.|+ ..+|
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~--~GF~~ks~~aD 179 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCG--SGFLIKSLKAD 179 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeeccc--CCccccccccc
Confidence 33447889999999999988887641122234444433 2555556677654 233 6775 2343 5666
Q ss_pred eeeeccccccccccHHHHHHHhhhhccCCe-EE-EEEcChhhHHHHHHHHHhcCCeE
Q 027609 135 LLHADHLFSTIKKSLKAVVAEVDRILRPDG-NL-ILRDDAETIVEVEDLVKSLHWDV 189 (221)
Q Consensus 135 lVh~~~v~~h~~~d~~~vL~EmdRVLRPGG-~~-ii~d~~~~~~~i~~i~~~l~W~~ 189 (221)
.| |-.++ +|-.++==..-+||-+| +| .|+-+-+.+++--..+.+..|.-
T Consensus 180 aV-----FLDlP-aPw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~ 230 (314)
T KOG2915|consen 180 AV-----FLDLP-APWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIE 230 (314)
T ss_pred eE-----EEcCC-ChhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCce
Confidence 55 44467 67777777777999777 33 44555556666666788888864
No 247
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=87.75 E-value=1.3 Score=42.49 Aligned_cols=122 Identities=15% Similarity=0.168 Sum_probs=68.9
Q ss_pred hhhhccc-CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-----CCHHHHHHcCccceec--cccccCCC-C
Q 027609 59 SYLNGMG-INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-----DTLPIIYERGLFGLYH--DWCESFNT-Y 129 (221)
Q Consensus 59 ~Y~~~L~-i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-----~~l~~a~eRGl~~~~~--d~~e~f~~-y 129 (221)
+|...+. ++.....+|||+=||.|+|+-.|+++... |.+++.. .+.+-|...|+.++.. .-.|.|.+ .
T Consensus 281 l~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~---V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~ 357 (432)
T COG2265 281 LYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKK---VHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW 357 (432)
T ss_pred HHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCE---EEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhc
Confidence 3444444 45556789999999999999999976433 4455442 2334455556654322 11333332 1
Q ss_pred -C-CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCC
Q 027609 130 -P-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHW 187 (221)
Q Consensus 130 -p-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W 187 (221)
. ..||.|..+==-.- -...++.++.+ +.|-..+++|=....+.+=-+++.+-+.
T Consensus 358 ~~~~~~d~VvvDPPR~G---~~~~~lk~l~~-~~p~~IvYVSCNP~TlaRDl~~L~~~gy 413 (432)
T COG2265 358 WEGYKPDVVVVDPPRAG---ADREVLKQLAK-LKPKRIVYVSCNPATLARDLAILASTGY 413 (432)
T ss_pred cccCCCCEEEECCCCCC---CCHHHHHHHHh-cCCCcEEEEeCCHHHHHHHHHHHHhCCe
Confidence 1 47788876511111 12356666555 5688899999666554443334444444
No 248
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=87.67 E-value=0.14 Score=46.15 Aligned_cols=120 Identities=19% Similarity=0.230 Sum_probs=67.9
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-C---CHH-HHHHcCccc--ee-ccccccCCCCC-CccCee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-D---TLP-IIYERGLFG--LY-HDWCESFNTYP-RTYDLL 136 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~---~l~-~a~eRGl~~--~~-~d~~e~f~~yp-~sFDlV 136 (221)
+......+||||-|++||-+.+|++.----..++..|.+ + .+. .+..-|+.. +. +|-....+.++ ..||.|
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchh
Confidence 456667889999999999777766541100135666664 2 222 333334433 22 34322111233 469998
Q ss_pred ee----ccc--ccccc---------------ccHHHHHHHhhhhc----cCCeEEEEEcChh----hHHHHHHHHHhc
Q 027609 137 HA----DHL--FSTIK---------------KSLKAVVAEVDRIL----RPDGNLILRDDAE----TIVEVEDLVKSL 185 (221)
Q Consensus 137 h~----~~v--~~h~~---------------~d~~~vL~EmdRVL----RPGG~~ii~d~~~----~~~~i~~i~~~l 185 (221)
.+ +.. +..-+ .--..+|....+.| ||||+++.+++.- .-+.|+.++++-
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~ 238 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRH 238 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHS
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhC
Confidence 74 332 21101 02346788888999 9999999998753 344566666553
No 249
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=85.49 E-value=0.6 Score=39.28 Aligned_cols=109 Identities=16% Similarity=0.296 Sum_probs=51.0
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc----Cc---cc-eeccccccCCCCC-C-ccCeeeec-
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER----GL---FG-LYHDWCESFNTYP-R-TYDLLHAD- 139 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR----Gl---~~-~~~d~~e~f~~yp-~-sFDlVh~~- 139 (221)
+.|+|+-||.||-+-+++...-. |.++|.. ..++.++.. |+ +- +..||-+-...+. + .||+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~---Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDR---VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-E---EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCCe---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 46999999999999999998533 4666653 355554443 22 11 2345544333333 2 27888754
Q ss_pred ----------cccc---cccc-cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhc
Q 027609 140 ----------HLFS---TIKK-SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSL 185 (221)
Q Consensus 140 ----------~v~~---h~~~-d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l 185 (221)
..|. +... +...++..+.++-+.=.++.=|..+ ++.+.+++..+
T Consensus 78 PWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t~nv~l~LPRn~d--l~ql~~~~~~l 135 (163)
T PF09445_consen 78 PWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKITPNVVLFLPRNSD--LNQLSQLTREL 135 (163)
T ss_dssp -BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-S-EEEEEETTB---HHHHHHT----
T ss_pred CCCCccccccCccCHHHccCCCCHHHHHHHHHhhCCCEEEEeCCCCC--HHHHHHHhccc
Confidence 2332 1222 5666777666665432222222222 55665554433
No 250
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.57 E-value=0.92 Score=41.03 Aligned_cols=133 Identities=17% Similarity=0.259 Sum_probs=77.3
Q ss_pred CCCeEEeecCcchHHHHHHhhC---CCe---E--EEeccCCCCCCHHHHHHcCccceeccccc------cCCCCC-CccC
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL---KVW---V--MNVVPIESPDTLPIIYERGLFGLYHDWCE------SFNTYP-RTYD 134 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~---~v~---v--mnv~~~d~~~~l~~a~eRGl~~~~~d~~e------~f~~yp-~sFD 134 (221)
.+++|.|+=+.+|++...|.++ +.. . -.++.+|...|.++ .|++.+..|... .+.-|- .-.|
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI---~GV~qlq~DIT~~stae~Ii~hfggekAd 117 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI---EGVIQLQGDITSASTAEAIIEHFGGEKAD 117 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc---CceEEeecccCCHhHHHHHHHHhCCCCcc
Confidence 3899999999999988877654 110 0 02566776555442 344333333211 011266 5889
Q ss_pred eeeeccccc--ccc---c-----cHHHHHHHhhhhccCCeEEEEE-----cChhhHHHHHHHHHhcCCeE-EEeecCCCe
Q 027609 135 LLHADHLFS--TIK---K-----SLKAVVAEVDRILRPDGNLILR-----DDAETIVEVEDLVKSLHWDV-RMIYTNDNQ 198 (221)
Q Consensus 135 lVh~~~v~~--h~~---~-----d~~~vL~EmdRVLRPGG~~ii~-----d~~~~~~~i~~i~~~l~W~~-~~~~~~~~e 198 (221)
+|.|...=. -++ + -...+|.=.-+||||||.|+-. ++.-....++.++++++=-. +..-..+-|
T Consensus 118 lVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ff~kv~~~KPrsSR~sSiE 197 (294)
T KOG1099|consen 118 LVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRKFFKKVTCAKPRSSRNSSIE 197 (294)
T ss_pred EEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHHHhhceeeecCCccccccce
Confidence 999886431 122 1 2344556678999999999754 33334567777777664321 111122358
Q ss_pred eEEEEEe
Q 027609 199 GMLCVHK 205 (221)
Q Consensus 199 ~~l~~~K 205 (221)
-+++|+-
T Consensus 198 aFvvC~~ 204 (294)
T KOG1099|consen 198 AFVVCLG 204 (294)
T ss_pred eeeeecc
Confidence 8888874
No 251
>PRK10742 putative methyltransferase; Provisional
Probab=84.27 E-value=1.1 Score=40.38 Aligned_cols=89 Identities=21% Similarity=0.198 Sum_probs=53.7
Q ss_pred cCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCC----CHHHHHHcC-------c-----cceecccccc-CC
Q 027609 65 GINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD----TLPIIYERG-------L-----FGLYHDWCES-FN 127 (221)
Q Consensus 65 ~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~----~l~~a~eRG-------l-----~~~~~d~~e~-f~ 127 (221)
+++.+..-+|||.=||+|..|-.++.+|..| +.++.+. .++-..+|. . +.+++.-+.. +.
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~G~~V---~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~ 159 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASVGCRV---RMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT 159 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHcCCEE---EEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHh
Confidence 3556544589999999999999999998763 5554432 222222221 0 1122221111 22
Q ss_pred CCCCccCeeeeccccccccccHHHHHHHhh
Q 027609 128 TYPRTYDLLHADHLFSTIKKSLKAVVAEVD 157 (221)
Q Consensus 128 ~yp~sFDlVh~~~v~~h~~~d~~~vL~Emd 157 (221)
..+.+||+|...=-|.|-. .-..+..||.
T Consensus 160 ~~~~~fDVVYlDPMfp~~~-ksa~vkk~mr 188 (250)
T PRK10742 160 DITPRPQVVYLDPMFPHKQ-KSALVKKEMR 188 (250)
T ss_pred hCCCCCcEEEECCCCCCCc-cccchhhhHH
Confidence 2456899999998887644 2345677774
No 252
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=83.90 E-value=6.6 Score=33.95 Aligned_cols=132 Identities=11% Similarity=0.086 Sum_probs=77.9
Q ss_pred EEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCH----HHHHHcCccceec-cccccCCCCC-C-ccCeeeeccccccc
Q 027609 74 VMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTL----PIIYERGLFGLYH-DWCESFNTYP-R-TYDLLHADHLFSTI 145 (221)
Q Consensus 74 VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l----~~a~eRGl~~~~~-d~~e~f~~yp-~-sFDlVh~~~v~~h~ 145 (221)
|.|+||--|-+..+|++++.- -.+...|.. ..+ +.+...|+...+. -.+..|...+ + ..|.|.-+.+=..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~-~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKA-PKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHH
Confidence 679999999999999999842 245666653 233 3444556644221 1233465565 3 37887766554433
Q ss_pred cccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEee---c-CCCeeEEEEEecccCC
Q 027609 146 KKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIY---T-NDNQGMLCVHKTYWRP 210 (221)
Q Consensus 146 ~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~~---~-~~~e~~l~~~K~~w~~ 210 (221)
...+|.+....++.--.||+.-. .....+.+.+....|...-.+ . ..=-.|+.+.++--..
T Consensus 80 ---I~~ILe~~~~~~~~~~~lILqP~-~~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~~~~~~~ 144 (205)
T PF04816_consen 80 ---IIEILEAGPEKLSSAKRLILQPN-THAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAERGEEKP 144 (205)
T ss_dssp ---HHHHHHHTGGGGTT--EEEEEES-S-HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEESSS--
T ss_pred ---HHHHHHhhHHHhccCCeEEEeCC-CChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEEeCCCCC
Confidence 46888888888888778888754 356789999999999986321 2 2235567776655443
No 253
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=83.75 E-value=1.5 Score=39.66 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=48.8
Q ss_pred chhhhhhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc----ccee
Q 027609 45 FTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL----FGLY 119 (221)
Q Consensus 45 f~~d~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl----~~~~ 119 (221)
|--|...=.+.|.. .++.. ..+||.+|+|.|+++..|++++..+ +.++.. .+++.-.++-- ..++
T Consensus 12 FL~d~~v~~kIv~~-----a~~~~--~d~VlEIGpG~GaLT~~Ll~~~~~v---~aiEiD~~l~~~L~~~~~~~~n~~vi 81 (259)
T COG0030 12 FLIDKNVIDKIVEA-----ANISP--GDNVLEIGPGLGALTEPLLERAARV---TAIEIDRRLAEVLKERFAPYDNLTVI 81 (259)
T ss_pred cccCHHHHHHHHHh-----cCCCC--CCeEEEECCCCCHHHHHHHhhcCeE---EEEEeCHHHHHHHHHhcccccceEEE
Confidence 55565554444422 22333 7899999999999999999997553 444443 36665555521 2233
Q ss_pred c-cccccCCCCCC--ccCeeeec
Q 027609 120 H-DWCESFNTYPR--TYDLLHAD 139 (221)
Q Consensus 120 ~-d~~e~f~~yp~--sFDlVh~~ 139 (221)
+ |... + .||. .++.|.++
T Consensus 82 ~~DaLk-~-d~~~l~~~~~vVaN 102 (259)
T COG0030 82 NGDALK-F-DFPSLAQPYKVVAN 102 (259)
T ss_pred eCchhc-C-cchhhcCCCEEEEc
Confidence 3 4211 1 1343 67777776
No 254
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=83.71 E-value=1.2 Score=41.36 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=30.3
Q ss_pred hhhhccc-CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHH
Q 027609 59 SYLNGMG-INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIY 111 (221)
Q Consensus 59 ~Y~~~L~-i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~ 111 (221)
.|...+. ++.... +|||+=||.|+|+-.|+++.-. |.+++.. ++++.|.
T Consensus 185 l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~---V~gvE~~~~av~~A~ 235 (352)
T PF05958_consen 185 LYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKK---VIGVEIVEEAVEDAR 235 (352)
T ss_dssp HHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSE---EEEEES-HHHHHHHH
T ss_pred HHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCe---EEEeeCCHHHHHHHH
Confidence 4554444 333333 7999999999999999998544 4555553 3555443
No 255
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=82.88 E-value=1 Score=38.22 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=43.7
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCc-----cceeccccccCCC-CC-CccCeee
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGL-----FGLYHDWCESFNT-YP-RTYDLLH 137 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl-----~~~~~d~~e~f~~-yp-~sFDlVh 137 (221)
........++|+|||.|-+.-+..-.+.- .+.++|.. +.|++...... +..+. |.-+.. +. ..||.+.
T Consensus 44 ygdiEgkkl~DLgcgcGmLs~a~sm~~~e--~vlGfDIdpeALEIf~rNaeEfEvqidlLq--cdildle~~~g~fDtav 119 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCGCGMLSIAFSMPKNE--SVLGFDIDPEALEIFTRNAEEFEVQIDLLQ--CDILDLELKGGIFDTAV 119 (185)
T ss_pred hccccCcchhhhcCchhhhHHHhhcCCCc--eEEeeecCHHHHHHHhhchHHhhhhhheee--eeccchhccCCeEeeEE
Confidence 44556888999999999876444333322 36788874 57776544422 11222 222222 23 7888887
Q ss_pred eccccc
Q 027609 138 ADHLFS 143 (221)
Q Consensus 138 ~~~v~~ 143 (221)
-+.=|.
T Consensus 120 iNppFG 125 (185)
T KOG3420|consen 120 INPPFG 125 (185)
T ss_pred ecCCCC
Confidence 776664
No 256
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=82.28 E-value=2.8 Score=41.05 Aligned_cols=101 Identities=16% Similarity=0.098 Sum_probs=58.3
Q ss_pred CCCeEEeecCcch--HHHHHHhhCCCeEEEeccCCCCC-CHHHHHHc--C--ccc--eeccc--cccCCCCC--CccCee
Q 027609 70 FVRNVMDMRAVYG--GFAAALKDLKVWVMNVVPIESPD-TLPIIYER--G--LFG--LYHDW--CESFNTYP--RTYDLL 136 (221)
Q Consensus 70 ~~r~VLD~GcG~G--~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eR--G--l~~--~~~d~--~e~f~~yp--~sFDlV 136 (221)
..+.++|+|.|.| +.++.++-+. ..--++.+|.+. |+..+... + =+| +++.. -+-+.|-+ +.||+|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 4556888877765 4556665554 111245555542 44433221 1 011 11110 01344544 669999
Q ss_pred eeccccccccc--cHHHHHHHhh-hhccCCeEEEEEcC
Q 027609 137 HADHLFSTIKK--SLKAVVAEVD-RILRPDGNLILRDD 171 (221)
Q Consensus 137 h~~~v~~h~~~--d~~~vL~Emd-RVLRPGG~~ii~d~ 171 (221)
.|++.+++..+ ...++..+.. +..||||++|+-+.
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 99999998875 4555555554 46899999999854
No 257
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=82.15 E-value=2.3 Score=39.20 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=43.4
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCC-CCCHHHHHHcC--cc--c---eeccccccCCCCC-CccCeeeec
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIES-PDTLPIIYERG--LF--G---LYHDWCESFNTYP-RTYDLLHAD 139 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~-~~~l~~a~eRG--l~--~---~~~d~~e~f~~yp-~sFDlVh~~ 139 (221)
...||.+|-|+|.++..|++.+..| ++++. +.|+....+|+ .+ + ++| |..|. -+ --||++.++
T Consensus 59 tD~VLEvGPGTGnLT~~lLe~~kkV---vA~E~Dprmvael~krv~gtp~~~kLqV~~--gD~lK-~d~P~fd~cVsN 130 (315)
T KOG0820|consen 59 TDVVLEVGPGTGNLTVKLLEAGKKV---VAVEIDPRMVAELEKRVQGTPKSGKLQVLH--GDFLK-TDLPRFDGCVSN 130 (315)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCeE---EEEecCcHHHHHHHHHhcCCCccceeeEEe--ccccc-CCCcccceeecc
Confidence 6789999999999999999998765 55554 35777777774 33 2 333 23333 33 567877764
No 258
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=81.53 E-value=0.52 Score=41.97 Aligned_cols=77 Identities=26% Similarity=0.391 Sum_probs=35.7
Q ss_pred cCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCc----------------cceec-cccccCC
Q 027609 65 GINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGL----------------FGLYH-DWCESFN 127 (221)
Q Consensus 65 ~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl----------------~~~~~-d~~e~f~ 127 (221)
+++.+...+|||.-||.|.=|.-|+..|. +|+.++.+..+....+.|| +.++| |-.+ +.
T Consensus 70 Glk~~~~~~VLDaTaGLG~Da~vlA~~G~---~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~-~L 145 (234)
T PF04445_consen 70 GLKPGMRPSVLDATAGLGRDAFVLASLGC---KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE-YL 145 (234)
T ss_dssp T-BTTB---EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC-HC
T ss_pred CCCCCCCCEEEECCCcchHHHHHHHccCC---eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH-HH
Confidence 36676667999999999986666655565 3566655544444444443 12333 2222 22
Q ss_pred CCC-CccCeeeeccccccc
Q 027609 128 TYP-RTYDLLHADHLFSTI 145 (221)
Q Consensus 128 ~yp-~sFDlVh~~~v~~h~ 145 (221)
.-+ ++||+|...=.|.|-
T Consensus 146 ~~~~~s~DVVY~DPMFp~~ 164 (234)
T PF04445_consen 146 RQPDNSFDVVYFDPMFPER 164 (234)
T ss_dssp CCHSS--SEEEE--S----
T ss_pred hhcCCCCCEEEECCCCCCc
Confidence 244 999999999888763
No 259
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=79.37 E-value=5.5 Score=37.72 Aligned_cols=101 Identities=18% Similarity=0.275 Sum_probs=63.0
Q ss_pred eEEeecCcchHHHHHHhhCCCeEEEeccCCC--C-C-CHHHHHHcCccceeccccccCCCCCCccCeeeeccccccccc-
Q 027609 73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIES--P-D-TLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK- 147 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~--~-~-~l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~- 147 (221)
+||=+|=.+|.++.+|...++.. + .|. + . +.+-+...|+.+....+....+++|..+|+|.-- +++
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~--~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~d~vl~~-----~PK~ 117 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYS--I--GDSYISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLIK-----VPKT 117 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCe--e--ehHHHHHHHHHHHHHHcCCCcccceeecccccccCCCCEEEEE-----eCCC
Confidence 78999999999999999766542 1 232 1 1 3333344455432111112244578779987543 554
Q ss_pred --cHHHHHHHhhhhccCCeEEEEEcChh-----hHHHHHHHH
Q 027609 148 --SLKAVVAEVDRILRPDGNLILRDDAE-----TIVEVEDLV 182 (221)
Q Consensus 148 --d~~~vL~EmdRVLRPGG~~ii~d~~~-----~~~~i~~i~ 182 (221)
-.+..|.-+.++|.||+.+++..... .++.+++++
T Consensus 118 ~~~l~~~l~~l~~~l~~~~~ii~g~~~k~i~~~~~~~~~k~l 159 (378)
T PRK15001 118 LALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVL 159 (378)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEEecCCCcHHHHHHHHHHh
Confidence 45667777888999999999886543 235555554
No 260
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=79.23 E-value=3.4 Score=33.09 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=40.3
Q ss_pred HHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEEEee-cCCCeeEEEEEec
Q 027609 150 KAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIY-TNDNQGMLCVHKT 206 (221)
Q Consensus 150 ~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~~~~-~~~~e~~l~~~K~ 206 (221)
..++.++.|+++|||.+.--... ..|++-+....+++.... ...+...+++.|+
T Consensus 70 ~e~~~~l~~~~~~~~~l~Tys~a---~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~~ 124 (124)
T PF05430_consen 70 EELFKKLARLSKPGGTLATYSSA---GAVRRALQQAGFEVEKVPGFGRKREMLRAVKP 124 (124)
T ss_dssp HHHHHHHHHHEEEEEEEEES--B---HHHHHHHHHCTEEEEEEE-STTSSEEEEEEC-
T ss_pred HHHHHHHHHHhCCCcEEEEeech---HHHHHHHHHcCCEEEEcCCCCCcchheEEEcC
Confidence 58999999999999998876554 347777888899986543 3457788888874
No 261
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=78.91 E-value=2.5 Score=39.14 Aligned_cols=83 Identities=22% Similarity=0.281 Sum_probs=52.7
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCCCccCeeeecccccc
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFST 144 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h 144 (221)
+........+|.--|.||.+.+++++--. ..+.++|.. ++++.+.++ +..|.+.|-++|++ |+
T Consensus 16 L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~------------l~~~~~r~~~~~~~--F~- 79 (310)
T PF01795_consen 16 LNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKER------------LKKFDDRFIFIHGN--FS- 79 (310)
T ss_dssp HT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCC------------TCCCCTTEEEEES---GG-
T ss_pred hCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHH------------HhhccceEEEEecc--HH-
Confidence 33445678999999999999999987212 367899884 588777766 33456778888887 33
Q ss_pred ccccHHHHHHHhhhhccCCeEEE
Q 027609 145 IKKSLKAVVAEVDRILRPDGNLI 167 (221)
Q Consensus 145 ~~~d~~~vL~EmdRVLRPGG~~i 167 (221)
+....|.+...+-+..|.++
T Consensus 80 ---~l~~~l~~~~~~~~~dgiL~ 99 (310)
T PF01795_consen 80 ---NLDEYLKELNGINKVDGILF 99 (310)
T ss_dssp ---GHHHHHHHTTTTS-EEEEEE
T ss_pred ---HHHHHHHHccCCCccCEEEE
Confidence 55566666644545556554
No 262
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=78.35 E-value=5.6 Score=35.46 Aligned_cols=112 Identities=21% Similarity=0.289 Sum_probs=61.8
Q ss_pred eEEeecCcchHHHHHHhhCCCeEEEeccCCCCC-CHHHHHHcCccce--eccccccCCCC--CCccCeeeecccccccc-
Q 027609 73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYERGLFGL--YHDWCESFNTY--PRTYDLLHADHLFSTIK- 146 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~-~l~~a~eRGl~~~--~~d~~e~f~~y--p~sFDlVh~~~v~~h~~- 146 (221)
+|+|+=||.|++...|.+.|..+ +..+|... .++ .+++-.... ..|..+ +... ...+|+++++--.+.+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~--v~a~e~~~~a~~-~~~~N~~~~~~~~Di~~-~~~~~~~~~~D~l~~gpPCq~fS~ 77 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEI--VAANEIDKSAAE-TYEANFPNKLIEGDITK-IDEKDFIPDIDLLTGGFPCQPFSI 77 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEE--EEEEeCCHHHHH-HHHHhCCCCCccCcccc-CchhhcCCCCCEEEeCCCChhhhH
Confidence 69999999999999998888554 45666543 333 333323222 223222 2221 34699999874333211
Q ss_pred -------cc-HHHHHHHhhhhc---cCCeEEEEEcCh---------hhHHHHHHHHHhcCCeEE
Q 027609 147 -------KS-LKAVVAEVDRIL---RPDGNLILRDDA---------ETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 147 -------~d-~~~vL~EmdRVL---RPGG~~ii~d~~---------~~~~~i~~i~~~l~W~~~ 190 (221)
+| ....+.|+-|++ ||- +++-|.. ...+.+...+..+.+.+.
T Consensus 78 ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~ 139 (275)
T cd00315 78 AGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVY 139 (275)
T ss_pred HhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhccCchHHHHHHHHHHHhCCcEEE
Confidence 12 223455555554 565 3444332 234556666777777764
No 263
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=78.06 E-value=1.4 Score=38.94 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=38.2
Q ss_pred chhhhhhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc
Q 027609 45 FTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER 113 (221)
Q Consensus 45 f~~d~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR 113 (221)
|-.|...=.+.+.. ++ ......|||+|+|+|.++..|++++. +++.++.. +..+...++
T Consensus 12 FL~~~~~~~~Iv~~-----~~--~~~~~~VlEiGpG~G~lT~~L~~~~~---~v~~vE~d~~~~~~L~~~ 71 (262)
T PF00398_consen 12 FLVDPNIADKIVDA-----LD--LSEGDTVLEIGPGPGALTRELLKRGK---RVIAVEIDPDLAKHLKER 71 (262)
T ss_dssp EEEHHHHHHHHHHH-----HT--CGTTSEEEEESSTTSCCHHHHHHHSS---EEEEEESSHHHHHHHHHH
T ss_pred eeCCHHHHHHHHHh-----cC--CCCCCEEEEeCCCCccchhhHhcccC---cceeecCcHhHHHHHHHH
Confidence 55554444444432 22 23588999999999999999999873 34555543 355655554
No 264
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=77.59 E-value=8.1 Score=36.27 Aligned_cols=111 Identities=18% Similarity=0.154 Sum_probs=71.6
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCC-CCCHHHHHH----cCccc----eeccccccCCCCCCccCeeeeccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIES-PDTLPIIYE----RGLFG----LYHDWCESFNTYPRTYDLLHADHL 141 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~-~~~l~~a~e----RGl~~----~~~d~~e~f~~yp~sFDlVh~~~v 141 (221)
+..|+||=||.|-|+-.++.++... |.++|. |...+...+ .++-+ +.+|--+ +.+-.+.||-|....
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~~--V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~re-v~~~~~~aDrIim~~- 264 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRPK--VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDARE-VAPELGVADRIIMGL- 264 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCce--EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHH-hhhccccCCEEEeCC-
Confidence 8889999999999999999887542 677776 334433332 33333 3455322 332227888887762
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcChh-------hHHHHHHHHHhcCCeE
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDDAE-------TIVEVEDLVKSLHWDV 189 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~-------~~~~i~~i~~~l~W~~ 189 (221)
+.+-..++-..-+.||+||++-+=+..+ ....+++.+.+++-++
T Consensus 265 ----p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~ 315 (341)
T COG2520 265 ----PKSAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKV 315 (341)
T ss_pred ----CCcchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcc
Confidence 3233567777778999999997764322 3467777777775543
No 265
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=77.32 E-value=3.7 Score=37.69 Aligned_cols=56 Identities=20% Similarity=0.334 Sum_probs=43.5
Q ss_pred CCCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcC-----------hhhHHHHHHHHHhcCCeEE
Q 027609 129 YPRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD-----------AETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 129 yp~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~-----------~~~~~~i~~i~~~l~W~~~ 190 (221)
|.+-||+|..+....|.- .|+ +.++++|+|.||+=.. ..+.++|.++++.-.|+-.
T Consensus 219 y~~~Fd~ifvs~s~vh~L-~p~-----l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 219 YQNFFDLIFVSCSMVHFL-KPE-----LFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred hcCCCCEEEEhhhhHhhc-chH-----HHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 779999999876555555 344 7789999999998854 3357889999999888753
No 266
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=76.69 E-value=2.8 Score=39.74 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=35.6
Q ss_pred CC-CccCeeeeccccccccc-cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 129 YP-RTYDLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 129 yp-~sFDlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
.| ++||.+.-+..+.-... .....+.|+.|.+||||.|++|..
T Consensus 291 ~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa 335 (380)
T PF11899_consen 291 LPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSA 335 (380)
T ss_pred CCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeC
Confidence 55 99999988887774443 677889999999999999999954
No 267
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=76.60 E-value=20 Score=36.68 Aligned_cols=160 Identities=16% Similarity=0.132 Sum_probs=88.0
Q ss_pred hhhhhhHHHHHhhhh--hcccCCCCCCCeEEeecCcchHHHHHHhhCCC---eEEE-eccCCC-------CCCHHHH---
Q 027609 47 ADYQHWKNVVSKSYL--NGMGINWSFVRNVMDMRAVYGGFAAALKDLKV---WVMN-VVPIES-------PDTLPII--- 110 (221)
Q Consensus 47 ~d~~~W~~~v~~~Y~--~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v---~vmn-v~~~d~-------~~~l~~a--- 110 (221)
..+..|-+.+ | |+ .+|+=-....+..|-.|=|+||++|.|+...- -+.| +..++. |..-.++
T Consensus 299 LR~~Q~ATGA-H-YKlRsIL~~~~i~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~ 376 (675)
T PF14314_consen 299 LRLFQLATGA-H-YKLRSILKNLNIKYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPSPPSAIMAL 376 (675)
T ss_pred hhhhcccccc-h-hhHHHHHHhcCCCcceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCCCcHHHhcc
Confidence 4556666666 4 65 24431123468899999999999999876521 1122 222221 1111122
Q ss_pred ---HHcCcccee------ccccccCCC----------CCCccCeeeeccccccccc--cHHHHHHH-hhhhccCCeEEEE
Q 027609 111 ---YERGLFGLY------HDWCESFNT----------YPRTYDLLHADHLFSTIKK--SLKAVVAE-VDRILRPDGNLIL 168 (221)
Q Consensus 111 ---~eRGl~~~~------~d~~e~f~~----------yp~sFDlVh~~~v~~h~~~--d~~~vL~E-mdRVLRPGG~~ii 168 (221)
.+|. ++.- .|+.+ ..| +..++|||.|..=...-.. ..++.+.+ +.++|.++|.+|+
T Consensus 377 g~~~~Rc-vn~~~~W~~pSDLs~-~~TW~YF~~l~~~~~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIf 454 (675)
T PF14314_consen 377 GNDKSRC-VNLDTCWEHPSDLSD-PETWKYFVSLKKQHNLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIF 454 (675)
T ss_pred Cccccee-ecchhhhcCccccCC-ccHHHHHHHHHhhcCCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 2221 2211 12222 111 4578999999843321110 34444444 4589999999999
Q ss_pred EcC--------hhhHHHHHHHHHhcCCeEEEee-cCCCeeEEEEEecccCC
Q 027609 169 RDD--------AETIVEVEDLVKSLHWDVRMIY-TNDNQGMLCVHKTYWRP 210 (221)
Q Consensus 169 ~d~--------~~~~~~i~~i~~~l~W~~~~~~-~~~~e~~l~~~K~~w~~ 210 (221)
.+= ..++..+...++...+-..-.. +...|..++|+|..=.+
T Consensus 455 KTYlt~l~~~~~~il~~lg~~F~~V~l~qT~~SSs~TSEVYlv~~~~~~~~ 505 (675)
T PF14314_consen 455 KTYLTRLLSPDYNILDLLGRYFKSVELVQTQFSSSFTSEVYLVFQKLKKFP 505 (675)
T ss_pred ehhHhhhhcchhhHHHHHHhhcCceEEEECCCCCCCceEEEEEEecccCCC
Confidence 842 2345666666666655443222 33589999999865444
No 268
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=76.13 E-value=3.7 Score=38.26 Aligned_cols=148 Identities=17% Similarity=0.119 Sum_probs=79.5
Q ss_pred Hhhhhhccc-CC---CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHH--HHHHcCc----cc-----eec
Q 027609 57 SKSYLNGMG-IN---WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLP--IIYERGL----FG-----LYH 120 (221)
Q Consensus 57 ~~~Y~~~L~-i~---~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~--~a~eRGl----~~-----~~~ 120 (221)
..+|++++. +. ..+.++||=+|-|-|++.+.-+.+. .+-|+.-.+.. +.++ .++-+.+ -+ ..+
T Consensus 104 e~~Yqemi~~l~l~s~~npkkvlVVgggDggvlrevikH~-~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iG 182 (337)
T KOG1562|consen 104 EFAYQEMIAHLALCSHPNPKKVLVVGGGDGGVLREVIKHK-SVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIG 182 (337)
T ss_pred cccceeeeeccccccCCCCCeEEEEecCCccceeeeeccc-cccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEec
Confidence 346777665 22 2368899999999999999887774 22233333322 1222 2222222 11 112
Q ss_pred cccccCCCCC-CccCeeeeccccccccc---cHHHHHHHhhhhccCCeEEEEEc-Chh----hHHHHHHHHH------hc
Q 027609 121 DWCESFNTYP-RTYDLLHADHLFSTIKK---SLKAVVAEVDRILRPDGNLILRD-DAE----TIVEVEDLVK------SL 185 (221)
Q Consensus 121 d~~e~f~~yp-~sFDlVh~~~v~~h~~~---d~~~vL~EmdRVLRPGG~~ii~d-~~~----~~~~i~~i~~------~l 185 (221)
|-.+-+..++ ++||+|.....----+. -...+..-|.|-|||+|++++.. +.. ++.++.+..+ ..
T Consensus 183 DG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f~~t~y 262 (337)
T KOG1562|consen 183 DGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIFDLTAY 262 (337)
T ss_pred cHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhcCccce
Confidence 3111111355 99999986522110110 33567778999999999999874 333 3444433322 23
Q ss_pred CCeEEEeecCCCeeEEEEEe
Q 027609 186 HWDVRMIYTNDNQGMLCVHK 205 (221)
Q Consensus 186 ~W~~~~~~~~~~e~~l~~~K 205 (221)
.|...-.....+-.+..|-|
T Consensus 263 a~ttvPTypsg~igf~l~s~ 282 (337)
T KOG1562|consen 263 AITTVPTYPSGRIGFMLCSK 282 (337)
T ss_pred eeecCCCCccceEEEEEecc
Confidence 33333223345566777764
No 269
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=73.45 E-value=2.3 Score=36.80 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=19.8
Q ss_pred ccCeeeec-cccccccccHHHHHHHhhhhccCCeEEEE
Q 027609 132 TYDLLHAD-HLFSTIKKSLKAVVAEVDRILRPDGNLIL 168 (221)
Q Consensus 132 sFDlVh~~-~v~~h~~~d~~~vL~EmdRVLRPGG~~ii 168 (221)
.-|+|.|+ .||. ++....|.++-.-||||-.+|-
T Consensus 122 ~AdvVf~Nn~~F~---~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 122 DADVVFVNNTCFD---PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp C-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEE
T ss_pred CCCEEEEeccccC---HHHHHHHHHHHhcCCCCCEEEE
Confidence 45888887 4443 2455667777788888877653
No 270
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=73.21 E-value=5.1 Score=36.94 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=33.9
Q ss_pred CCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc
Q 027609 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER 113 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR 113 (221)
.....++|.=||.||-+.+++++--. ..|.++|.. .+++.+.++
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~ 63 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKER 63 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHH
Confidence 34567999999999999999886212 357899985 588887775
No 271
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.88 E-value=48 Score=30.15 Aligned_cols=127 Identities=17% Similarity=0.292 Sum_probs=66.9
Q ss_pred EEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccc--eeccccccCCCCC-CccCeeeecc---cccc---
Q 027609 74 VMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYP-RTYDLLHADH---LFST--- 144 (221)
Q Consensus 74 VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~--~~~d~~e~f~~yp-~sFDlVh~~~---v~~h--- 144 (221)
|+|+=||.|++...|...|..+ +..+|........+++-.++ ...|..+ +.+-. ..+|+++++- -|+-
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~--~~a~e~~~~a~~ty~~N~~~~~~~~Di~~-~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKC--VFASEIDKYAQKTYEANFGNKVPFGDITK-ISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeE--EEEEeCCHHHHHHHHHhCCCCCCccChhh-hhhhhCCCcCEEEecCCCcccchhcc
Confidence 6899999999999998888544 33444433222233332322 1223222 22111 3578888662 2221
Q ss_pred ---ccccHHHHHHHhhhhc---cCCeEEEEEcChh---------hHHHHHHHHHhcCCeEEE--ee------cCCCeeE-
Q 027609 145 ---IKKSLKAVVAEVDRIL---RPDGNLILRDDAE---------TIVEVEDLVKSLHWDVRM--IY------TNDNQGM- 200 (221)
Q Consensus 145 ---~~~d~~~vL~EmdRVL---RPGG~~ii~d~~~---------~~~~i~~i~~~l~W~~~~--~~------~~~~e~~- 200 (221)
..+....++.|+-|++ ||- +++-|..+ .+..+...+..+.+++.. .+ .+.++++
T Consensus 78 ~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvPQ~R~R~f 155 (315)
T TIGR00675 78 RKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVPQNRERIY 155 (315)
T ss_pred cCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEEEcHHHCCCCCCccEEE
Confidence 1112235667777776 774 55555543 234445556667776642 22 2235554
Q ss_pred EEEEe
Q 027609 201 LCVHK 205 (221)
Q Consensus 201 l~~~K 205 (221)
+|+.+
T Consensus 156 ~ia~r 160 (315)
T TIGR00675 156 IVGFR 160 (315)
T ss_pred EEEEe
Confidence 66665
No 272
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=69.93 E-value=12 Score=32.54 Aligned_cols=42 Identities=31% Similarity=0.567 Sum_probs=38.0
Q ss_pred HHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE
Q 027609 149 LKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 149 ~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~ 190 (221)
....+.|+.|||+|+|.+++.........+..+++.++|...
T Consensus 78 ~~~~~~~~~rvl~~~~~~~v~~~~~~~~~~~~~~~~~gf~~~ 119 (302)
T COG0863 78 LLQWLAEQKRVLKPGGSLYVIDPFSNLARIEDIAKKLGFEIL 119 (302)
T ss_pred HHHHHHHhhheecCCCEEEEECCchhhhHHHHHHHhCCCeEe
Confidence 478899999999999999999998888889999888999875
No 273
>PHA01634 hypothetical protein
Probab=67.96 E-value=9.5 Score=31.75 Aligned_cols=59 Identities=17% Similarity=0.089 Sum_probs=41.0
Q ss_pred hhhhhhHHHHHhhhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHH
Q 027609 47 ADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYE 112 (221)
Q Consensus 47 ~d~~~W~~~v~~~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~e 112 (221)
.+-.+|+.-... |.. + ....++|+|+|++-|.-|-+++-+|+.- |+.+... ...++..+
T Consensus 10 ~~c~ywrey~~~-Y~~-i---dvk~KtV~dIGA~iGdSaiYF~l~GAK~--Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 10 LECDYWREYPHA-YGM-L---NVYQRTIQIVGADCGSSALYFLLRGASF--VVQYEKEEKLRKKWEE 69 (156)
T ss_pred ccchHHHHHHHH-hhh-e---eecCCEEEEecCCccchhhHHhhcCccE--EEEeccCHHHHHHHHH
Confidence 567889887754 654 3 3457899999999999999988888752 4555543 34444433
No 274
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=67.82 E-value=8.5 Score=36.12 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=58.3
Q ss_pred CCCeEEeecCc-chHHHHHHhh-CCCeEEEeccCCCC-CCHHHHHHcCccceeccc-cccCCCCCCccCeeeeccccccc
Q 027609 70 FVRNVMDMRAV-YGGFAAALKD-LKVWVMNVVPIESP-DTLPIIYERGLFGLYHDW-CESFNTYPRTYDLLHADHLFSTI 145 (221)
Q Consensus 70 ~~r~VLD~GcG-~G~faa~L~~-~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~-~e~f~~yp~sFDlVh~~~v~~h~ 145 (221)
....|+=+|+| .|..|..+++ .++ +|+.++.+ +.++.+++-|-.-++..- .+.+......||+|...-
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga---~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv----- 237 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGA---EVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV----- 237 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC---eEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC-----
Confidence 46677777776 4457777766 353 56888876 588888887753333210 111222334588887642
Q ss_pred cccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 146 KKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 146 ~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
. ...+...-+.||+||.+++--.+
T Consensus 238 --~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 --G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred --C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 45566667999999999998544
No 275
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=67.81 E-value=28 Score=33.22 Aligned_cols=112 Identities=11% Similarity=0.090 Sum_probs=66.6
Q ss_pred CCCCCCeEEeecCcchHHHHH--HhhCCCe-----------------------------EE-------EeccCCCC-CCH
Q 027609 67 NWSFVRNVMDMRAVYGGFAAA--LKDLKVW-----------------------------VM-------NVVPIESP-DTL 107 (221)
Q Consensus 67 ~~~~~r~VLD~GcG~G~faa~--L~~~~v~-----------------------------vm-------nv~~~d~~-~~l 107 (221)
+|.....++|==||+|+|+.. |...++- -. .+.+.|.. .++
T Consensus 188 gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i 267 (381)
T COG0116 188 GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHI 267 (381)
T ss_pred CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHH
Confidence 344558999999999999864 4333210 00 14577875 588
Q ss_pred HHHHHc----Ccccee----ccccccCCCCCCccCeeeeccc-----ccc--ccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 108 PIIYER----GLFGLY----HDWCESFNTYPRTYDLLHADHL-----FST--IKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 108 ~~a~eR----Gl~~~~----~d~~e~f~~yp~sFDlVh~~~v-----~~h--~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
+.|+.. |+...+ .|. ..|.+..+.||+|.|+-= -.+ ...--..+..+|.|.++--+.+|++.+.
T Consensus 268 ~~Ak~NA~~AGv~d~I~f~~~d~-~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e 346 (381)
T COG0116 268 EGAKANARAAGVGDLIEFKQADA-TDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSE 346 (381)
T ss_pred HHHHHHHHhcCCCceEEEEEcch-hhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEccH
Confidence 877665 443322 221 223322279999999821 111 0001124566788889988999999887
Q ss_pred hhHHHHH
Q 027609 173 ETIVEVE 179 (221)
Q Consensus 173 ~~~~~i~ 179 (221)
.....+.
T Consensus 347 ~~~~~~~ 353 (381)
T COG0116 347 DLLFCLG 353 (381)
T ss_pred HHHHHHh
Confidence 6655443
No 276
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=66.91 E-value=20 Score=31.40 Aligned_cols=91 Identities=16% Similarity=0.119 Sum_probs=50.0
Q ss_pred CCCeEEeecCc-chHHHHHHhhC-CCeEEEeccCCC-CCCHHHHHHcCccceeccccccC----CCCCCccCeeeecccc
Q 027609 70 FVRNVMDMRAV-YGGFAAALKDL-KVWVMNVVPIES-PDTLPIIYERGLFGLYHDWCESF----NTYPRTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG-~G~faa~L~~~-~v~vmnv~~~d~-~~~l~~a~eRGl~~~~~d~~e~f----~~yp~sFDlVh~~~v~ 142 (221)
...+||-.|+| .|..++.+++. |+.+ +.-++. ++..+.+.+.|....+..-...+ .+-.+.+|++...
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~--v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~--- 233 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASR--VTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEA--- 233 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcE--EEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEEC---
Confidence 35788999875 24454555443 5442 222222 34566666666532222100000 0112668887753
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.. ....+.++-|.|+|+|.++.-
T Consensus 234 --~~--~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 234 --TG--VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred --CC--ChHHHHHHHHHHhcCCEEEEE
Confidence 11 136788889999999999864
No 277
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=66.67 E-value=7.3 Score=34.47 Aligned_cols=91 Identities=21% Similarity=0.249 Sum_probs=51.2
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCC-CCCHHHHHHc----Cccc---eeccccccCCCCC-CccCeeeecccc
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIES-PDTLPIIYER----GLFG---LYHDWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~-~~~l~~a~eR----Gl~~---~~~d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
..+-|+|+|+|-++..-+++ +. .|..+.. +.....+.+. |+.+ +..| -.+|. ...|+|.|-.+-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~--rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gD----A~~y~fe~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AE--RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGD----ARDYDFENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hc--eEEEEecCcHHHHHhhhcCCCCCCcceEEEecc----cccccccccceeHHHHhh
Confidence 56899999999765443333 11 1233333 2344444444 2222 2233 34677 889999998655
Q ss_pred ccccc-cHHHHHHHhhhhccCCeEEEEE
Q 027609 143 STIKK-SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 143 ~h~~~-d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.-+.. ....+|.-+-.-||-.|.+|=.
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCccccH
Confidence 54432 3455555555567777777643
No 278
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=64.62 E-value=39 Score=32.26 Aligned_cols=105 Identities=22% Similarity=0.112 Sum_probs=59.2
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCC--Ce-EEEeccCCCC----CCHHHHHHcCccc----eeccccccCC-------
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLK--VW-VMNVVPIESP----DTLPIIYERGLFG----LYHDWCESFN------- 127 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~--v~-vmnv~~~d~~----~~l~~a~eRGl~~----~~~d~~e~f~------- 127 (221)
|+-....+||||=|.+|+=+++|++.- .| -..|++-|.. ++|.....|--.. +-||. ..|+
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~-~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDA-SLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccc-eeccccccccC
Confidence 444558899999999999888887641 11 1134554442 3555444552111 12331 1111
Q ss_pred -CCC-CccCeeeeccccc------c--------ccc--------cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 128 -TYP-RTYDLLHADHLFS------T--------IKK--------SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 128 -~yp-~sFDlVh~~~v~~------h--------~~~--------d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
.+. -.||=|-|.-=.+ + |.. --..+|.---|.|||||.+|.|++
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC 297 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC 297 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 123 5688776652111 1 110 113456667799999999999976
No 279
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=63.32 E-value=22 Score=35.01 Aligned_cols=98 Identities=17% Similarity=0.157 Sum_probs=60.9
Q ss_pred CCCCeEEeecCcchHHHHHHhh--CCCeEEEeccCCCC-CCHHHHHHcCccce-ecc-------------ccccC-----
Q 027609 69 SFVRNVMDMRAVYGGFAAALKD--LKVWVMNVVPIESP-DTLPIIYERGLFGL-YHD-------------WCESF----- 126 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~--~~v~vmnv~~~d~~-~~l~~a~eRGl~~~-~~d-------------~~e~f----- 126 (221)
....+|+=+|||.=|+++.... .|+ .|..+|.. +.++.+.+-|-.-. +.. ..+.+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA---~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA---IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence 3588999999999988775433 365 35666764 47777777654211 110 00000
Q ss_pred CCC-C--CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 127 NTY-P--RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 127 ~~y-p--~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
..| + +.+|+|........-+ .|..+..||-+.+||||.++.--
T Consensus 240 ~~~~~~~~gaDVVIetag~pg~~-aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 240 ALFAEQAKEVDIIITTALIPGKP-APKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHhccCCCCEEEECCCCCccc-CcchHHHHHHHhcCCCCEEEEEc
Confidence 011 1 4689998764332222 46566799999999999988663
No 280
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=63.00 E-value=34 Score=30.71 Aligned_cols=91 Identities=21% Similarity=0.150 Sum_probs=50.4
Q ss_pred CCCeEEeecCcc-hHHHHHHhhC-CCeEEEeccCCC-CCCHHHHHHcCccceeccccc-cCC--CCCCccCeeeeccccc
Q 027609 70 FVRNVMDMRAVY-GGFAAALKDL-KVWVMNVVPIES-PDTLPIIYERGLFGLYHDWCE-SFN--TYPRTYDLLHADHLFS 143 (221)
Q Consensus 70 ~~r~VLD~GcG~-G~faa~L~~~-~v~vmnv~~~d~-~~~l~~a~eRGl~~~~~d~~e-~f~--~yp~sFDlVh~~~v~~ 143 (221)
...+||=.|||. |.+++.+++. |+.++-+...+. ++-++++.+.|..-+ +..+ .+. ...+.||+|.-.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~---- 245 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEA---- 245 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEEC----
Confidence 356888889875 4455555554 554433333222 346677777765321 1111 000 012456765543
Q ss_pred cccccHHHHHHHhhhhccCCeEEEEE
Q 027609 144 TIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 144 h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.- . ...+.+..++|||||.+++-
T Consensus 246 -~g-~-~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 246 -TG-V-PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred -cC-C-HHHHHHHHHHccCCcEEEEE
Confidence 11 1 24678889999999999875
No 281
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=62.60 E-value=34 Score=29.87 Aligned_cols=91 Identities=15% Similarity=0.071 Sum_probs=50.3
Q ss_pred CCCeEEeecCc-chHHHHHHhhC-CCeEEEeccCCCCCCHHHHHHcCccceeccccccCC-CCCCccCeeeecccccccc
Q 027609 70 FVRNVMDMRAV-YGGFAAALKDL-KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFN-TYPRTYDLLHADHLFSTIK 146 (221)
Q Consensus 70 ~~r~VLD~GcG-~G~faa~L~~~-~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~-~yp~sFDlVh~~~v~~h~~ 146 (221)
...+||-.||| .|..+..+++. |+.+..++. ..+.++.+.+.|.-..+.+-.+.+. .-++.+|++... + .
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~-~----~ 234 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITR--SPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVT-V----V 234 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEEC-C----C
Confidence 35788889987 66666666554 655433322 2245666666653222221001010 012457876542 1 1
Q ss_pred ccHHHHHHHhhhhccCCeEEEEE
Q 027609 147 KSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 147 ~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
-...+.++-|.|+++|.++.-
T Consensus 235 --~~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 235 --SGAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred --cHHHHHHHHHhcccCCEEEEE
Confidence 135678888999999999875
No 282
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=62.19 E-value=8 Score=30.91 Aligned_cols=31 Identities=13% Similarity=-0.002 Sum_probs=23.3
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCC
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIES 103 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~ 103 (221)
......|+|||.|-+.--|.+.|-. -.++|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~---G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYP---GWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCC---cccccc
Confidence 4667999999999888888887643 255554
No 283
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=61.56 E-value=10 Score=34.53 Aligned_cols=134 Identities=13% Similarity=0.140 Sum_probs=60.1
Q ss_pred CCeEEeecCcchHHHHHHhhCC-CeEEEeccCCCC-CCHHHH----H-HcCccc--eec--cccccCCCCC-CccCeeee
Q 027609 71 VRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESP-DTLPII----Y-ERGLFG--LYH--DWCESFNTYP-RTYDLLHA 138 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~-v~vmnv~~~d~~-~~l~~a----~-eRGl~~--~~~--d~~e~f~~yp-~sFDlVh~ 138 (221)
-++|+=+|||+=-+++-+..+- .....+.++|.. +.++.+ . .-||-. .++ |-.+ .+++ ..||+|+-
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~--~~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLD--VTYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGG--G-GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhc--cccccccCCEEEE
Confidence 4699999999988888765531 112245666664 333333 3 223321 111 2111 2356 89999997
Q ss_pred ccccccccccHHHHHHHhhhhccCCeEEEEEcChhh---HHHHHHHHHhcCCeEEEeecCC---CeeEEEEEec
Q 027609 139 DHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDAET---IVEVEDLVKSLHWDVRMIYTND---NQGMLCVHKT 206 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~---~~~i~~i~~~l~W~~~~~~~~~---~e~~l~~~K~ 206 (221)
+.+...-.++-+.+|..+.+.++||..+++|..+.. +-.......--.|++....|.. =.-+++++|.
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~vd~~~l~gf~~~~~~hP~~~ViNSvv~~rk~ 272 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPVVDPEDLRGFEVLAVVHPTDEVINSVVFARKK 272 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS----TGGGTTEEEEEEE---TT---EEEEE---
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCCCChHHCCCeEEEEEECCCCCceeEEEEEEec
Confidence 765543334779999999999999999999966532 1111111111167765444322 3568888884
No 284
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=60.55 E-value=11 Score=33.48 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=65.5
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHH----HHHcCc--ccee--------ccccccCC--CC
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPI----IYERGL--FGLY--------HDWCESFN--TY 129 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~----a~eRGl--~~~~--------~d~~e~f~--~y 129 (221)
+..+ .+.|+.+|||.=+.+-.|.... .+.+..+|.+++++. ..+.|. ...+ .+|.+.+. .|
T Consensus 78 ~~~g-~~qvV~LGaGlDTr~~Rl~~~~--~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gf 154 (260)
T TIGR00027 78 VAAG-IRQVVILGAGLDTRAYRLPWPD--GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGF 154 (260)
T ss_pred HhcC-CcEEEEeCCccccHHHhcCCCC--CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCC
Confidence 4443 6789999999999988885432 124688898876652 322221 0111 34544432 14
Q ss_pred C-CccCeeeeccccccccc-cHHHHHHHhhhhccCCeEEEEEc
Q 027609 130 P-RTYDLLHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 130 p-~sFDlVh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
+ ..-=++.+-.|+..++. .-..+|..+.+..-||+.+++.-
T Consensus 155 d~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~ 197 (260)
T TIGR00027 155 DPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDY 197 (260)
T ss_pred CCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3 34446777778876665 66678888888888999999874
No 285
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=59.57 E-value=14 Score=34.27 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=58.5
Q ss_pred CCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccceeccccccCCCCC--CccCeeeecccccccccc
Q 027609 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP--RTYDLLHADHLFSTIKKS 148 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~~yp--~sFDlVh~~~v~~h~~~d 148 (221)
.....|+|+-+||.+-.|.+++.+| ..+|.-.|.+-..+.|++.-.. ...|-.-| +-.|-..|..|- .
T Consensus 212 ~M~avDLGAcPGGWTyqLVkr~m~V---~aVDng~ma~sL~dtg~v~h~r--~DGfk~~P~r~~idWmVCDmVE-----k 281 (358)
T COG2933 212 GMWAVDLGACPGGWTYQLVKRNMRV---YAVDNGPMAQSLMDTGQVTHLR--EDGFKFRPTRSNIDWMVCDMVE-----K 281 (358)
T ss_pred CceeeecccCCCccchhhhhcceEE---EEeccchhhhhhhcccceeeee--ccCcccccCCCCCceEEeehhc-----C
Confidence 5668999999999999999998765 7777766777777787754322 23444335 789999998654 3
Q ss_pred HHHHHHHhhhhccCC
Q 027609 149 LKAVVAEVDRILRPD 163 (221)
Q Consensus 149 ~~~vL~EmdRVLRPG 163 (221)
|..+-.=|.--|+.|
T Consensus 282 P~rv~~li~~Wl~nG 296 (358)
T COG2933 282 PARVAALIAKWLVNG 296 (358)
T ss_pred cHHHHHHHHHHHHcc
Confidence 555555555566654
No 286
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=59.09 E-value=33 Score=30.20 Aligned_cols=91 Identities=15% Similarity=0.069 Sum_probs=51.4
Q ss_pred CCCeEEeecCcc-hHHHHHHhhC-CCeEEEeccCCCCCCHHHHHHcCccceec----cccccCCCC-C-CccCeeeeccc
Q 027609 70 FVRNVMDMRAVY-GGFAAALKDL-KVWVMNVVPIESPDTLPIIYERGLFGLYH----DWCESFNTY-P-RTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~-G~faa~L~~~-~v~vmnv~~~d~~~~l~~a~eRGl~~~~~----d~~e~f~~y-p-~sFDlVh~~~v 141 (221)
...+||-.|+|. |.++..|++. |+.+..++. .++..+.+.+.|...++. ++.+.+..+ + +.+|++...
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~--s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~-- 234 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDI--DDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDA-- 234 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECC--CHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEEC--
Confidence 356888888864 5566666665 655433322 234556666665322221 111212112 3 557877543
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.. ....+.++.+.|+++|.++.-
T Consensus 235 ---~g--~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 235 ---TG--NPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred ---CC--CHHHHHHHHHHHhcCCEEEEE
Confidence 11 135688999999999999864
No 287
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=57.85 E-value=20 Score=32.83 Aligned_cols=118 Identities=18% Similarity=0.352 Sum_probs=67.3
Q ss_pred hhhhhhHHHHHhhhhhccc-CC---CCCCCeEEeecCcchHHHHHHhhC----C-CeEEEeccCCCCCCHHHHHHcC-cc
Q 027609 47 ADYQHWKNVVSKSYLNGMG-IN---WSFVRNVMDMRAVYGGFAAALKDL----K-VWVMNVVPIESPDTLPIIYERG-LF 116 (221)
Q Consensus 47 ~d~~~W~~~v~~~Y~~~L~-i~---~~~~r~VLD~GcG~G~faa~L~~~----~-v~vmnv~~~d~~~~l~~a~eRG-l~ 116 (221)
-+.+-|.-+-+++-.-+|. ++ --...+||=+|+++|+-..+..+- + |..+..++....+.+..|..|- ++
T Consensus 129 vEyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNii 208 (317)
T KOG1596|consen 129 VEYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNII 208 (317)
T ss_pred EEEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCce
Confidence 4455676555443333443 21 123778999999999987777654 2 2333334443445777777774 45
Q ss_pred ceeccccccCCCCCCccCeeee--ccccccccc--cHHHHHHHhhhhccCCeEEEEE
Q 027609 117 GLYHDWCESFNTYPRTYDLLHA--DHLFSTIKK--SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 117 ~~~~d~~e~f~~yp~sFDlVh~--~~v~~h~~~--d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.++.|. .+|..|-++.- .-+|+.... .-..+.+-..--||+||.|+|+
T Consensus 209 PIiEDA-----rhP~KYRmlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 209 PIIEDA-----RHPAKYRMLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeeccC-----CCchheeeeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence 677662 34444433221 112232332 2234556777889999999999
No 288
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=57.53 E-value=9.8 Score=37.72 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=30.7
Q ss_pred CCCcccchhhhhhhHHHHHhhhh-hcccCCCCCCCeEEeecCcchHHHHHHhhC
Q 027609 39 KAAPEDFTADYQHWKNVVSKSYL-NGMGINWSFVRNVMDMRAVYGGFAAALKDL 91 (221)
Q Consensus 39 ~~~~~~f~~d~~~W~~~v~~~Y~-~~L~i~~~~~r~VLD~GcG~G~faa~L~~~ 91 (221)
++|+.+|=.-+..=-..+ .+|. +.+++.. ...+||+=||+|.|+-+|+.+
T Consensus 354 ~iSp~AFFQ~Nt~~aevL-ys~i~e~~~l~~--~k~llDv~CGTG~iglala~~ 404 (534)
T KOG2187|consen 354 RISPGAFFQTNTSAAEVL-YSTIGEWAGLPA--DKTLLDVCCGTGTIGLALARG 404 (534)
T ss_pred EECCchhhccCcHHHHHH-HHHHHHHhCCCC--CcEEEEEeecCCceehhhhcc
Confidence 355555544444333333 1233 2333444 478999999999999999886
No 289
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=57.36 E-value=39 Score=27.98 Aligned_cols=93 Identities=20% Similarity=0.181 Sum_probs=51.6
Q ss_pred CCCCeEEeecCcc-hHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccceecc----ccccC-CCCCCccCeeeecc
Q 027609 69 SFVRNVMDMRAVY-GGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFGLYHD----WCESF-NTYPRTYDLLHADH 140 (221)
Q Consensus 69 ~~~r~VLD~GcG~-G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d----~~e~f-~~yp~sFDlVh~~~ 140 (221)
....+||..|+|. |..++.+++. +..+ ..++.+ +..+.+.+.|....+.. ..+.+ ..-.+.||++...
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~- 208 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARV---IVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDA- 208 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeE---EEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEEC-
Confidence 3467899999985 6566666553 5443 333333 35556666653222211 00000 0112678887653
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
. . . ...+....+.|+++|.++.-..
T Consensus 209 -~---~-~-~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 209 -V---G-G-PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred -C---C-C-HHHHHHHHHhcccCCEEEEEcc
Confidence 1 1 1 1456667789999999997643
No 290
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=57.01 E-value=46 Score=30.18 Aligned_cols=110 Identities=16% Similarity=0.097 Sum_probs=73.1
Q ss_pred CeEEeecCc--chHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCC-CccCeeeeccccccccc
Q 027609 72 RNVMDMRAV--YGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKK 147 (221)
Q Consensus 72 r~VLD~GcG--~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~ 147 (221)
.+|.=+|.| -|+|+..|.++| +..++.+.|.+ ..+..+.+.|++..+.+ ....-. ...|+|.-+-= ..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g-~~v~i~g~d~~~~~~~~a~~lgv~d~~~~---~~~~~~~~~aD~VivavP---i~- 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAG-LVVRIIGRDRSAATLKAALELGVIDELTV---AGLAEAAAEADLVIVAVP---IE- 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcC-CeEEEEeecCcHHHHHHHhhcCccccccc---chhhhhcccCCEEEEecc---HH-
Confidence 445556655 467888998887 44578999986 48888888877644321 111113 77899886611 12
Q ss_pred cHHHHHHHhhhhccCCeEEE--EEcChhhHHHHHHHHHhcCCeEE
Q 027609 148 SLKAVVAEVDRILRPDGNLI--LRDDAETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~~i--i~d~~~~~~~i~~i~~~l~W~~~ 190 (221)
.-..++.|+..-|+||-.+. -|.....++.+++...... ++.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~v 119 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFV 119 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeE
Confidence 56788999999999987663 3344566788888776666 554
No 291
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=56.78 E-value=11 Score=34.12 Aligned_cols=125 Identities=10% Similarity=0.061 Sum_probs=67.6
Q ss_pred hhhhcccCCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcC-ccceec--cccccCCC-CCCcc
Q 027609 59 SYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYERG-LFGLYH--DWCESFNT-YPRTY 133 (221)
Q Consensus 59 ~Y~~~L~i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRG-l~~~~~--d~~e~f~~-yp~sF 133 (221)
+|.+.++. -....+|||+|||.=-|+.-......-+ .+.+.|.. .+++++..-. ..+.-+ .+++-+.. .+.+.
T Consensus 95 fY~~if~~-~~~p~sVlDigCGlNPlalp~~~~~~~a-~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~ 172 (251)
T PF07091_consen 95 FYDEIFGR-IPPPDSVLDIGCGLNPLALPWMPEAPGA-TYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPA 172 (251)
T ss_dssp HHHHHCCC-S---SEEEEET-TTCHHHHHTTTSSTT--EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEE
T ss_pred HHHHHHhc-CCCCchhhhhhccCCceehhhcccCCCc-EEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCc
Confidence 56665552 1238899999999999999776653222 46777775 3555443321 111111 11222332 33889
Q ss_pred Ceeeeccccccccc----cHHHHHHHhhhhccCCeEEEEEcCh------------hhHHHHHHHHHhcCCeEE
Q 027609 134 DLLHADHLFSTIKK----SLKAVVAEVDRILRPDGNLILRDDA------------ETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 134 DlVh~~~v~~h~~~----d~~~vL~EmdRVLRPGG~~ii~d~~------------~~~~~i~~i~~~l~W~~~ 190 (221)
|+.+.-.++.-+.. .-..+|.+++ .=++++|-+. .....+++.+..=.|.+.
T Consensus 173 DlaLllK~lp~le~q~~g~g~~ll~~~~-----~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~ 240 (251)
T PF07091_consen 173 DLALLLKTLPCLERQRRGAGLELLDALR-----SPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVD 240 (251)
T ss_dssp SEEEEET-HHHHHHHSTTHHHHHHHHSC-----ESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEE
T ss_pred chhhHHHHHHHHHHHhcchHHHHHHHhC-----CCeEEEeccccccccCccccccCHHHHHHHhcccCCceee
Confidence 99887665543332 2233444433 3367777432 235678888888888864
No 292
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=56.03 E-value=43 Score=29.45 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=49.7
Q ss_pred CCCeEEeecCcc-hHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccceecccccc---CCCCCCccCeeeeccccc
Q 027609 70 FVRNVMDMRAVY-GGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCES---FNTYPRTYDLLHADHLFS 143 (221)
Q Consensus 70 ~~r~VLD~GcG~-G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~---f~~yp~sFDlVh~~~v~~ 143 (221)
...+||-.|||. |.++..+++. |+.. +..++.+ +..+.+.+.|...++..-.+. +....+.||++....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~--v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~--- 239 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAE--IVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEAS--- 239 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcE--EEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECC---
Confidence 578899988765 5555555553 5521 2333332 455666666642222210001 111124478776431
Q ss_pred cccccHHHHHHHhhhhccCCeEEEEE
Q 027609 144 TIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 144 h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
. ....+.++.+.|+++|.++.-
T Consensus 240 --g--~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 240 --G--APAALASALRVVRPGGTVVQV 261 (339)
T ss_pred --C--CHHHHHHHHHHHhcCCEEEEE
Confidence 1 134678889999999999854
No 293
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=55.47 E-value=21 Score=33.28 Aligned_cols=46 Identities=17% Similarity=0.076 Sum_probs=36.3
Q ss_pred CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHc
Q 027609 68 WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP-DTLPIIYER 113 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eR 113 (221)
.......+|.--|.||.+.+++++.--...+.++|.. +.++.+.++
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~ 67 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKER 67 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHH
Confidence 3335889999999999999999984333357889984 688888887
No 294
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=54.58 E-value=27 Score=28.72 Aligned_cols=86 Identities=20% Similarity=0.300 Sum_probs=49.1
Q ss_pred eeccccccCCCC-CC-ccCeeeeccccccccc----------cHHHHHHHhhhhccCCeEEEEEc------ChhhHHHHH
Q 027609 118 LYHDWCESFNTY-PR-TYDLLHADHLFSTIKK----------SLKAVVAEVDRILRPDGNLILRD------DAETIVEVE 179 (221)
Q Consensus 118 ~~~d~~e~f~~y-p~-sFDlVh~~~v~~h~~~----------d~~~vL~EmdRVLRPGG~~ii~d------~~~~~~~i~ 179 (221)
.+++--|.+..| +. ..|++..+ |-.++. .-..+|...-++|+|||.+++.- ..+..+.+.
T Consensus 30 li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~ 107 (140)
T PF06962_consen 30 LILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVE 107 (140)
T ss_dssp EEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHH
T ss_pred EEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHH
Confidence 344444555555 44 78887766 222221 45678889999999999998872 123456677
Q ss_pred HHHHhc---CCeEEEee----cCCCeeEEEEEe
Q 027609 180 DLVKSL---HWDVRMIY----TNDNQGMLCVHK 205 (221)
Q Consensus 180 ~i~~~l---~W~~~~~~----~~~~e~~l~~~K 205 (221)
+.+.++ .|++.... .+....+++.+|
T Consensus 108 ~~~~~L~~~~~~V~~~~~~N~~~~pp~l~~ieK 140 (140)
T PF06962_consen 108 EFLASLDQKEFNVLKYQFINQKNNPPLLVIIEK 140 (140)
T ss_dssp HHHHTS-TTTEEEEEEEESS-SS---EEEEEEE
T ss_pred HHHHhCCcceEEEEEEEccCCCCCCCEEEEEEC
Confidence 777766 45654433 223556666655
No 295
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=53.91 E-value=71 Score=22.04 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=38.3
Q ss_pred HHHHHHHhhhhccCCeEE-EEEcChhhHHHHHHHHHhcCCeEEEeecCCCeeEEEEEe
Q 027609 149 LKAVVAEVDRILRPDGNL-ILRDDAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK 205 (221)
Q Consensus 149 ~~~vL~EmdRVLRPGG~~-ii~d~~~~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K 205 (221)
|.-.+.+.-+=|.+|..+ ++.|+......|.+.++...+++.....++.+-.++.+|
T Consensus 13 Pll~~~~~l~~l~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~~~~~~~~~i~I~K 70 (70)
T PF01206_consen 13 PLLKAKKALKELPPGEVLEVLVDDPAAVEDIPRWCEENGYEVVEVEEEGGEYRILIRK 70 (70)
T ss_dssp HHHHHHHHHHTSGTT-EEEEEESSTTHHHHHHHHHHHHTEEEEEEEESSSSEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEEeCCEEEEEEEC
Confidence 333444444556788777 777888888999999999999976655555554555444
No 296
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=53.83 E-value=23 Score=34.36 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=84.4
Q ss_pred hhHHHHHhhhhhccc---CC-CCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCC-CCCHHHHHHcC----cc-c---
Q 027609 51 HWKNVVSKSYLNGMG---IN-WSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIES-PDTLPIIYERG----LF-G--- 117 (221)
Q Consensus 51 ~W~~~v~~~Y~~~L~---i~-~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~-~~~l~~a~eRG----l~-~--- 117 (221)
++..+-.+.|.+.|- ++ -...|+||=+|.|-|--++.|.+.+ .+++++-+|. |+|++++...- +. |
T Consensus 266 QfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~ 344 (508)
T COG4262 266 QFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATVLRALNQGSFS 344 (508)
T ss_pred eeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCcc
Confidence 344444344555443 22 1248999999999999999999997 2345666665 46888776321 10 1
Q ss_pred -----eeccccccCCC---CCCccCeeeeccccccccc----cHHHHHHHhhhhccCCeEEEEEcChhh-----HHHHHH
Q 027609 118 -----LYHDWCESFNT---YPRTYDLLHADHLFSTIKK----SLKAVVAEVDRILRPDGNLILRDDAET-----IVEVED 180 (221)
Q Consensus 118 -----~~~d~~e~f~~---yp~sFDlVh~~~v~~h~~~----d~~~vL~EmdRVLRPGG~~ii~d~~~~-----~~~i~~ 180 (221)
++.| ++|.. -.+.||.|....---.-+. --..+-.=..|-|+++|.+|+.-..++ -=.|.+
T Consensus 345 dpRv~Vv~d--DAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~a 422 (508)
T COG4262 345 DPRVTVVND--DAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDA 422 (508)
T ss_pred CCeeEEEec--cHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehh
Confidence 2222 12221 2378999887621111110 012333445677889999999965443 122334
Q ss_pred HHHhcCCeEEEee----cCCCeeEEEEEecccC
Q 027609 181 LVKSLHWDVRMIY----TNDNQGMLCVHKTYWR 209 (221)
Q Consensus 181 i~~~l~W~~~~~~----~~~~e~~l~~~K~~w~ 209 (221)
-+|+-...+..+. +=++=.+.+|.|.--.
T Consensus 423 Tik~AG~~~~Pyhv~VPTFGeWGf~l~~~~~~~ 455 (508)
T COG4262 423 TIKSAGYRVWPYHVHVPTFGEWGFILAAPGDAD 455 (508)
T ss_pred HHHhCcceeeeeEEecCcccccceeecccccCC
Confidence 4455555543221 2234456666664433
No 297
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=53.59 E-value=25 Score=29.36 Aligned_cols=37 Identities=24% Similarity=0.202 Sum_probs=25.3
Q ss_pred CCCC--CCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 126 FNTY--PRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 126 f~~y--p~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
.+++ +++.|++.|. |+..+ .....-|||||++++.+.
T Consensus 59 ~~~~~~~~~~D~lva~--------d~~~~-~~~~~~l~~gg~ii~ns~ 97 (197)
T PRK06274 59 SSPLIPEGQADLLLAL--------EPAEV-ARNLHFLKKGGKIIVNAY 97 (197)
T ss_pred CCCccCCCCCCEEEEc--------CHHHH-HHHHhhcCCCcEEEEECC
Confidence 4455 4899999986 34443 333445999999998854
No 298
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=53.30 E-value=1.1e+02 Score=27.52 Aligned_cols=118 Identities=17% Similarity=0.216 Sum_probs=59.7
Q ss_pred CCCeEEeecCcch-HHHHHHhhCCCeEEEeccCCCC--C-CHHHHHHcCcc--ceeccccccCCCC-CCccCeeeecccc
Q 027609 70 FVRNVMDMRAVYG-GFAAALKDLKVWVMNVVPIESP--D-TLPIIYERGLF--GLYHDWCESFNTY-PRTYDLLHADHLF 142 (221)
Q Consensus 70 ~~r~VLD~GcG~G-~faa~L~~~~v~vmnv~~~d~~--~-~l~~a~eRGl~--~~~~d~~e~f~~y-p~sFDlVh~~~v~ 142 (221)
..++||=+|=.-- ++|.+|...+.. +-|+-+|.. + .-++|.+.|+. ...||...+||+. -++||++++.=--
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~-I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPy 122 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKR-ITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPY 122 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SE-EEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---S
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCe-EEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCC
Confidence 4789999997655 688888666532 245555542 2 22356666763 3568988888764 4999999987332
Q ss_pred ccccccHHHHHHHhhhhccCCe---EEEEEcCh---hhHHHHHHHHHhcCCeEE
Q 027609 143 STIKKSLKAVVAEVDRILRPDG---NLILRDDA---ETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG---~~ii~d~~---~~~~~i~~i~~~l~W~~~ 190 (221)
. .+-...++.----.||..| +|-++... ..+-++|+.+..|.--+.
T Consensus 123 T--~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~ 174 (243)
T PF01861_consen 123 T--PEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVIT 174 (243)
T ss_dssp S--HHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEE
T ss_pred C--HHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHH
Confidence 2 1134445555555677544 55555543 346789999888888764
No 299
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=51.28 E-value=40 Score=30.67 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=32.5
Q ss_pred eeeccccccccc--cHHHHHHHhhhhccCCeEEEEEc----C-hhhHHHHHHHHHh
Q 027609 136 LHADHLFSTIKK--SLKAVVAEVDRILRPDGNLILRD----D-AETIVEVEDLVKS 184 (221)
Q Consensus 136 Vh~~~v~~h~~~--d~~~vL~EmdRVLRPGG~~ii~d----~-~~~~~~i~~i~~~ 184 (221)
|-...+++|+++ +|..++......|-||.+++|+- . ......++.++..
T Consensus 154 vll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~ 209 (267)
T PF04672_consen 154 VLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQ 209 (267)
T ss_dssp EEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHH
T ss_pred eeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHc
Confidence 444558888876 89999999999999999999992 1 2223555555543
No 300
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=49.67 E-value=11 Score=28.56 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=50.7
Q ss_pred cchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccceecc----ccccCCC-CC-CccCeeeeccccccccccHHH
Q 027609 80 VYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFGLYHD----WCESFNT-YP-RTYDLLHADHLFSTIKKSLKA 151 (221)
Q Consensus 80 G~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d----~~e~f~~-yp-~sFDlVh~~~v~~h~~~d~~~ 151 (221)
|.|.++..|++. |. +++.++.+ .-++.+.+-|...++.. +.+.+.. ++ +.+|+|.=. .. + ..
T Consensus 1 ~vG~~a~q~ak~~G~---~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~-----~g-~-~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGA---KVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDC-----VG-S-GD 70 (130)
T ss_dssp HHHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEES-----SS-S-HH
T ss_pred ChHHHHHHHHHHcCC---EEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEe-----cC-c-HH
Confidence 467778877665 53 45666655 37788888874322221 1111111 34 578877532 11 1 47
Q ss_pred HHHHhhhhccCCeEEEEEcCh
Q 027609 152 VVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 152 vL~EmdRVLRPGG~~ii~d~~ 172 (221)
.+.+.-.+|||||.+++--..
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESST
T ss_pred HHHHHHHHhccCCEEEEEEcc
Confidence 888899999999999987443
No 301
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=48.67 E-value=34 Score=30.38 Aligned_cols=90 Identities=16% Similarity=0.250 Sum_probs=49.8
Q ss_pred CCCeEEeecC--cchHHHHHHhhC-CCeEEEeccCCCCCCHHHHHH-cCccceec-----cccccCCCC-CCccCeeeec
Q 027609 70 FVRNVMDMRA--VYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYE-RGLFGLYH-----DWCESFNTY-PRTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~Gc--G~G~faa~L~~~-~v~vmnv~~~d~~~~l~~a~e-RGl~~~~~-----d~~e~f~~y-p~sFDlVh~~ 139 (221)
...+||=.|+ |.|.++..|++. |+.++.++. .++..+.+.+ -|.-.++. ++.+.+..+ ++.+|+|.-.
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~--~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~ 228 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG--SDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDN 228 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEEC
Confidence 4678888886 566777777664 665433322 1234555555 45422221 111111111 2457776532
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.- ...+.+.-+.|+++|.++.-
T Consensus 229 -----~g---~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 229 -----VG---GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred -----CC---HHHHHHHHHHhccCcEEEEe
Confidence 11 25677888999999999864
No 302
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=48.55 E-value=10 Score=36.16 Aligned_cols=15 Identities=27% Similarity=0.735 Sum_probs=13.7
Q ss_pred CC-CccCeeeeccccc
Q 027609 129 YP-RTYDLLHADHLFS 143 (221)
Q Consensus 129 yp-~sFDlVh~~~v~~ 143 (221)
|| +|-+++|++.++|
T Consensus 158 fP~~Slh~~~Ss~slH 173 (386)
T PLN02668 158 FPARSIDVFHSAFSLH 173 (386)
T ss_pred cCCCceEEEEeeccce
Confidence 78 9999999998886
No 303
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=48.00 E-value=41 Score=30.16 Aligned_cols=91 Identities=16% Similarity=0.126 Sum_probs=48.1
Q ss_pred CCCeEEeecCcc-hHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccceec-------cccccCCCC-C-CccC---
Q 027609 70 FVRNVMDMRAVY-GGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFGLYH-------DWCESFNTY-P-RTYD--- 134 (221)
Q Consensus 70 ~~r~VLD~GcG~-G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~-------d~~e~f~~y-p-~sFD--- 134 (221)
...+||=.|||. |.+++.+++. |+.+ +.++.+ +.++.+.+.|...++. ++.+...-+ + +.+|
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~v---i~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~ 242 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAV---VAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTG 242 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeE---EEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCc
Confidence 367899999965 4455555443 5543 444443 4677777766422221 111101001 1 3344
Q ss_pred -eeeeccccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 135 -LLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 135 -lVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
+|. .-.- . ...+..+-++||+||.+++-.
T Consensus 243 d~v~-----d~~g-~-~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 243 WKIF-----ECSG-S-KPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CEEE-----ECCC-C-hHHHHHHHHHHhcCCeEEEEC
Confidence 222 1111 1 346667788999999998763
No 304
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=47.80 E-value=59 Score=30.50 Aligned_cols=104 Identities=16% Similarity=0.179 Sum_probs=62.7
Q ss_pred CCCCCCCeEEeecCcchH----HHHHHhhCC--CeEEEeccCCCC-----CCHH--------HHHHcCccceecc-cccc
Q 027609 66 INWSFVRNVMDMRAVYGG----FAAALKDLK--VWVMNVVPIESP-----DTLP--------IIYERGLFGLYHD-WCES 125 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~----faa~L~~~~--v~vmnv~~~d~~-----~~l~--------~a~eRGl~~~~~d-~~e~ 125 (221)
+...+--.|+|+|.|.|. |-.+|+.++ ...+.+++++.+ ..++ +|..-|++=.++- ..++
T Consensus 106 ~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~ 185 (374)
T PF03514_consen 106 FEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVES 185 (374)
T ss_pred hccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCc
Confidence 445567789999999995 777888873 345567777662 1333 4555555322221 1111
Q ss_pred CCCC--------CCccCeeeeccccccccc------cHHHHHHHhhhhccCCeEEEEE
Q 027609 126 FNTY--------PRTYDLLHADHLFSTIKK------SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 126 f~~y--------p~sFDlVh~~~v~~h~~~------d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
+... ++-.=+|.|..-++|+.+ +|.+.++..-|-|+|--.++.-
T Consensus 186 ~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 186 LEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred hhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 2211 223334567666677752 5778899999999999665554
No 305
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=47.33 E-value=14 Score=32.19 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=16.8
Q ss_pred CCeEEeecCcchHHHHHHhhC
Q 027609 71 VRNVMDMRAVYGGFAAALKDL 91 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~~ 91 (221)
.-+|+++|+|.|.++..+++.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~ 39 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRY 39 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHH
Confidence 478999999999999988663
No 306
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=46.49 E-value=50 Score=30.29 Aligned_cols=87 Identities=20% Similarity=0.194 Sum_probs=53.8
Q ss_pred eEEeecCcchHHHHHH-hhC-CCeEEEeccCCCC-CCHHHHHHcCccceeccccc-----cCCCCC--CccCeee-eccc
Q 027609 73 NVMDMRAVYGGFAAAL-KDL-KVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCE-----SFNTYP--RTYDLLH-ADHL 141 (221)
Q Consensus 73 ~VLD~GcG~G~faa~L-~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e-----~f~~yp--~sFDlVh-~~~v 141 (221)
+|+=+|||+=|+.+.+ ++. |+. .|+-+|.+ +-++.|++.+--..+.+-.+ ...... +.||++. |+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~--~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGAS--VVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCc--eEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 8999999997666544 333 443 35566765 58888888643222211111 000122 4688876 333
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
. ..++..+-+++||||.+++-
T Consensus 248 ----~---~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 248 ----S---PPALDQALEALRPGGTVVVV 268 (350)
T ss_pred ----C---HHHHHHHHHHhcCCCEEEEE
Confidence 1 34888899999999999887
No 307
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=45.82 E-value=39 Score=29.37 Aligned_cols=89 Identities=13% Similarity=0.174 Sum_probs=50.3
Q ss_pred CCCeEEeecC--cchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccceec----cccccCCCC-CCccCeeeecc
Q 027609 70 FVRNVMDMRA--VYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFGLYH----DWCESFNTY-PRTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~Gc--G~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~----d~~e~f~~y-p~sFDlVh~~~ 140 (221)
...+||=.|+ |.|.++..|++. |+.++ .++.+ +-.+.+.+.|...++. ++.+.+... ++.+|+|.-.
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi---~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~- 218 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVI---GCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDN- 218 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEE---EEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEEC-
Confidence 3577877774 566676666654 66543 33332 3566666666532221 111111111 2457776532
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.- ...+.+.-+.|+|+|.++.-
T Consensus 219 ----~g---~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 219 ----VG---GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred ----CC---HHHHHHHHHhhccCCEEEEE
Confidence 11 35678899999999999864
No 308
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=45.22 E-value=43 Score=29.45 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=49.7
Q ss_pred CCCeEEeecC--cchHHHHHHhhC-CCeEEEeccCCCCCCHHHHHHcCccceec--c---ccccCCC-CCCccCeeeecc
Q 027609 70 FVRNVMDMRA--VYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYERGLFGLYH--D---WCESFNT-YPRTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~Gc--G~G~faa~L~~~-~v~vmnv~~~d~~~~l~~a~eRGl~~~~~--d---~~e~f~~-yp~sFDlVh~~~ 140 (221)
...+||=.|+ |.|.++..|++. |+.++.++. .++..+.+.+-|...++. + +.+.... .++.+|+|.-.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~--s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~- 214 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG--SDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDN- 214 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEEC-
Confidence 3578887884 467777777664 665433322 224566776666522221 1 1000000 12457766532
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.- ...+.++-+.|+|||.++.-
T Consensus 215 ----~G---~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 215 ----VG---GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred ----CC---HHHHHHHHHHhCcCcEEEEe
Confidence 12 23567888999999999864
No 309
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=44.22 E-value=49 Score=29.07 Aligned_cols=99 Identities=19% Similarity=0.194 Sum_probs=60.4
Q ss_pred HHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCCCccCeeeeccccccccccHHHHHHHhhhhccC
Q 027609 84 FAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKSLKAVVAEVDRILRP 162 (221)
Q Consensus 84 faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRP 162 (221)
||.+|.+++--+ .|++.|.+ ..++.+.+.|.+....+--+.+ ..+|+|.-+-= .. ....+|.|+...|+|
T Consensus 1 ~A~aL~~~g~~~-~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~----~~~DlvvlavP---~~-~~~~~l~~~~~~~~~ 71 (258)
T PF02153_consen 1 IALALRKAGPDV-EVYGYDRDPETLEAALELGIIDEASTDIEAV----EDADLVVLAVP---VS-AIEDVLEEIAPYLKP 71 (258)
T ss_dssp HHHHHHHTTTTS-EEEEE-SSHHHHHHHHHTTSSSEEESHHHHG----GCCSEEEE-S----HH-HHHHHHHHHHCGS-T
T ss_pred ChHHHHhCCCCe-EEEEEeCCHHHHHHHHHCCCeeeccCCHhHh----cCCCEEEEcCC---HH-HHHHHHHHhhhhcCC
Confidence 688999987221 56888876 5888888998865432201111 45588876521 12 567899999999999
Q ss_pred CeEEEE--EcChhhHHHHHHHHH-hcCCeEEE
Q 027609 163 DGNLIL--RDDAETIVEVEDLVK-SLHWDVRM 191 (221)
Q Consensus 163 GG~~ii--~d~~~~~~~i~~i~~-~l~W~~~~ 191 (221)
|..+.= |...+..+.+++... ..++-...
T Consensus 72 ~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~H 103 (258)
T PF02153_consen 72 GAIVTDVGSVKAPIVEAMERLLPEGVRFVGGH 103 (258)
T ss_dssp TSEEEE--S-CHHHHHHHHHHHTSSGEEEEEE
T ss_pred CcEEEEeCCCCHHHHHHHHHhcCcccceeecC
Confidence 876632 234556777777666 44454443
No 310
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=43.26 E-value=1.7e+02 Score=24.92 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=48.1
Q ss_pred CCCeEEeecC--cchHHHHHHhhC-CCeEEEeccCCCCCCHHHHHHcCccceeccccccC---CCCCCccCeeeeccccc
Q 027609 70 FVRNVMDMRA--VYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESF---NTYPRTYDLLHADHLFS 143 (221)
Q Consensus 70 ~~r~VLD~Gc--G~G~faa~L~~~-~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f---~~yp~sFDlVh~~~v~~ 143 (221)
...+||-.|| +.|.+++.++.. |+.++.++. ++..+.+.+.|.-..+..-...+ .+..+.+|++... ..
T Consensus 143 ~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~--~~ 217 (319)
T cd08267 143 PGQRVLINGASGGVGTFAVQIAKALGAHVTGVCS---TRNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDA--VG 217 (319)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeC---HHHHHHHHHcCCCEeecCCCCCcchhccCCCCCcEEEEC--CC
Confidence 4688999997 345555555553 665544432 24556666666522222111111 1122668888643 11
Q ss_pred cccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 144 TIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 144 h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
...........+ |+|+|.++.-.
T Consensus 218 ---~~~~~~~~~~~~-l~~~g~~i~~g 240 (319)
T cd08267 218 ---NSPFSLYRASLA-LKPGGRYVSVG 240 (319)
T ss_pred ---chHHHHHHhhhc-cCCCCEEEEec
Confidence 012333333333 99999998653
No 311
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=42.96 E-value=69 Score=24.45 Aligned_cols=53 Identities=11% Similarity=0.240 Sum_probs=29.7
Q ss_pred HHHHHcCccc-eeccccccCCCCCCccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 108 PIIYERGLFG-LYHDWCESFNTYPRTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 108 ~~a~eRGl~~-~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
++..++|+.- +-+.-....+.++.++|++.++. .+..|+..+.. |++++...-
T Consensus 24 ~~l~~~gi~~~~~~~~v~~~~~~~~~aDiiv~s~----------~l~~~~~~~~~--~~v~~~~~~ 77 (93)
T COG3414 24 EVLKELGIDVDVEQCAVDEIKALTDGADIIVTST----------KLADEFEDIPK--GYVVITGNG 77 (93)
T ss_pred HHHHHcCCCceeeeEEecccccCCCcccEEEEeh----------HhhhhcCcCCC--ceEEEEccc
Confidence 4566777642 11211223455778999999872 33344433333 888887543
No 312
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=42.72 E-value=47 Score=30.08 Aligned_cols=89 Identities=15% Similarity=0.250 Sum_probs=50.2
Q ss_pred CCCeEEeecC--cchHHHHHHhhC-CCeEEEeccCCCC-CCHHHHH-HcCccceec-----cccccCCCC-CCccCeeee
Q 027609 70 FVRNVMDMRA--VYGGFAAALKDL-KVWVMNVVPIESP-DTLPIIY-ERGLFGLYH-----DWCESFNTY-PRTYDLLHA 138 (221)
Q Consensus 70 ~~r~VLD~Gc--G~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~-eRGl~~~~~-----d~~e~f~~y-p~sFDlVh~ 138 (221)
...+||=.|| |.|.++..+++. |+.+ +.++.+ +.++.+. +-|...++. ++.+.+... ++.+|++.-
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~V---i~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d 234 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYV---VGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFD 234 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEE---EEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEE
Confidence 4678888887 467777777664 6554 333333 3455554 455422221 111111111 245777653
Q ss_pred ccccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 139 DHLFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
. .- ...+.+.-+.|||||.+++-
T Consensus 235 ~-----vG---~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 235 N-----VG---GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred C-----CC---HHHHHHHHHHhccCCEEEEE
Confidence 2 11 24677888999999999854
No 313
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=42.09 E-value=51 Score=29.03 Aligned_cols=92 Identities=18% Similarity=0.202 Sum_probs=49.9
Q ss_pred CCCeEEeecCcc-hHHHHHHhhC-CCeEEEeccCCC-CCCHHHHHHcCccceeccc---cccCCCC-C-CccCeeeeccc
Q 027609 70 FVRNVMDMRAVY-GGFAAALKDL-KVWVMNVVPIES-PDTLPIIYERGLFGLYHDW---CESFNTY-P-RTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~GcG~-G~faa~L~~~-~v~vmnv~~~d~-~~~l~~a~eRGl~~~~~d~---~e~f~~y-p-~sFDlVh~~~v 141 (221)
...+||-.|+|. |.++..+++. |+.. +..+.. ++..+.+.+.|...++..- .+.+..+ + +.||++.-.
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~--v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~-- 234 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKR--VIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEA-- 234 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCE--EEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEEC--
Confidence 356788888754 4455555543 5541 233333 2355666666642222210 0111112 2 458877642
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
. .....+.++-|.|+++|.++.-.
T Consensus 235 ---~--g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 235 ---A--GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred ---C--CCHHHHHHHHHHhhcCCEEEEEc
Confidence 1 12467888999999999998653
No 314
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=41.71 E-value=23 Score=32.19 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=32.6
Q ss_pred CeEEeecCcchHHHHHHhhCCCeEEEeccCCCC--CCHHHHHH
Q 027609 72 RNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP--DTLPIIYE 112 (221)
Q Consensus 72 r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~--~~l~~a~e 112 (221)
.-|..+|.|+||++.++++.++-.+.++..|.. ..|+...|
T Consensus 52 ~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~E 94 (326)
T KOG0821|consen 52 AYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSE 94 (326)
T ss_pred ceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhh
Confidence 348999999999999999998877788888873 35555544
No 315
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=41.27 E-value=87 Score=27.57 Aligned_cols=92 Identities=16% Similarity=0.228 Sum_probs=49.1
Q ss_pred CCCCCCCeEEeecC--cchHHHHHHhhC-CC-eEEEeccCCCC-CCHHHHHH-cCccceec----cccccCCCC-CCccC
Q 027609 66 INWSFVRNVMDMRA--VYGGFAAALKDL-KV-WVMNVVPIESP-DTLPIIYE-RGLFGLYH----DWCESFNTY-PRTYD 134 (221)
Q Consensus 66 i~~~~~r~VLD~Gc--G~G~faa~L~~~-~v-~vmnv~~~d~~-~~l~~a~e-RGl~~~~~----d~~e~f~~y-p~sFD 134 (221)
+..+...+||=.|+ |.|.++..+++. |+ .+ ..++.+ +..+.+.+ -|...++. ++.+.+... ++.+|
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~V---i~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd 226 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRV---VGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVD 226 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEE---EEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCce
Confidence 44444478888886 566677666654 65 44 333332 34455544 45422221 111111111 25688
Q ss_pred eeeeccccccccccHHHHHHHhhhhccCCeEEEE
Q 027609 135 LLHADHLFSTIKKSLKAVVAEVDRILRPDGNLIL 168 (221)
Q Consensus 135 lVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii 168 (221)
+|... .. ...+.++-+.|||+|.++.
T Consensus 227 ~vid~-----~g---~~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 227 VYFDN-----VG---GEISDTVISQMNENSHIIL 252 (345)
T ss_pred EEEEC-----CC---cHHHHHHHHHhccCCEEEE
Confidence 77642 11 1235778899999999986
No 316
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=39.09 E-value=94 Score=27.26 Aligned_cols=90 Identities=19% Similarity=0.215 Sum_probs=47.3
Q ss_pred CCeEEeecCc-chHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccceec----cccccCCC-CC-CccCeeeeccc
Q 027609 71 VRNVMDMRAV-YGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFGLYH----DWCESFNT-YP-RTYDLLHADHL 141 (221)
Q Consensus 71 ~r~VLD~GcG-~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~----d~~e~f~~-yp-~sFDlVh~~~v 141 (221)
..+||-.||| .|.++..+++. |.. .+..++.+ +..+.+.+-|...++. ++.+.+.. .+ +.||++.-.
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~g~~--~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~-- 243 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLLGAA--RIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEA-- 243 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC--EEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEc--
Confidence 5678887765 35555555543 531 12333333 3555555555221221 11111111 13 578877632
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
. . ....+.++.+.|+++|.++.-
T Consensus 244 ~---g--~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 244 V---G--FEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred c---C--CHHHHHHHHHHhhcCCEEEEE
Confidence 1 1 125788889999999999854
No 317
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=38.39 E-value=1.4e+02 Score=25.24 Aligned_cols=89 Identities=17% Similarity=0.093 Sum_probs=48.6
Q ss_pred CCCeEEeecCcc-hHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCcc-ceeccccccCCCCCCccCeeeeccccccc
Q 027609 70 FVRNVMDMRAVY-GGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLF-GLYHDWCESFNTYPRTYDLLHADHLFSTI 145 (221)
Q Consensus 70 ~~r~VLD~GcG~-G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~-~~~~d~~e~f~~yp~sFDlVh~~~v~~h~ 145 (221)
+..+||=.|||. |..+..+++. |+. .++.++.+ +.++.+.+.|.. .+.. ..+.+. -.+.+|++....
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~--~vi~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~-~~~~~d~vl~~~----- 167 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAR--EVVGVDPDAARRELAEALGPADPVAA-DTADEI-GGRGADVVIEAS----- 167 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC--cEEEECCCHHHHHHHHHcCCCccccc-cchhhh-cCCCCCEEEEcc-----
Confidence 456778788764 4444444443 554 13444443 456677777621 1111 111111 125688776421
Q ss_pred cccHHHHHHHhhhhccCCeEEEEE
Q 027609 146 KKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 146 ~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.....+.+..+.|+++|.++.-
T Consensus 168 --~~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 168 --GSPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred --CChHHHHHHHHHhcCCcEEEEE
Confidence 1134678889999999999865
No 318
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=37.73 E-value=82 Score=28.14 Aligned_cols=92 Identities=13% Similarity=0.111 Sum_probs=50.0
Q ss_pred CCCeEEeecCcc-hHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCC---CCccCeeeeccccc
Q 027609 70 FVRNVMDMRAVY-GGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTY---PRTYDLLHADHLFS 143 (221)
Q Consensus 70 ~~r~VLD~GcG~-G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~y---p~sFDlVh~~~v~~ 143 (221)
...+||=.|||. |.++..+++. |+. .++.++.+ +.++.+.+.|...++..-.+.+..+ .+.||+|.-.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~--~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~---- 242 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAA--EIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEV---- 242 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCc--EEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEEC----
Confidence 467888888863 2344444443 542 23444443 5778888877533321100111111 1237776532
Q ss_pred cccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 144 TIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 144 h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.- . ...+.+..+.|||||.+++-.
T Consensus 243 -~G-~-~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 243 -SG-H-PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred -CC-C-HHHHHHHHHHhhcCCEEEEEc
Confidence 11 2 246778889999999998753
No 319
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=37.44 E-value=2e+02 Score=25.63 Aligned_cols=87 Identities=11% Similarity=-0.081 Sum_probs=49.5
Q ss_pred CCCeEEeecCcchH-HHHHHhh-CCCeEEEeccCCC-CCCHHHHHHcCccceeccccccCCCCCCccCeeeecccccccc
Q 027609 70 FVRNVMDMRAVYGG-FAAALKD-LKVWVMNVVPIES-PDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIK 146 (221)
Q Consensus 70 ~~r~VLD~GcG~G~-faa~L~~-~~v~vmnv~~~d~-~~~l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~ 146 (221)
...+||=.|||.-+ +++.+++ .|+.+ +.++. ++-++.+++-|.--++.. + .+-++.||++.-.. .
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~v---i~~~~~~~~~~~a~~~Ga~~vi~~--~--~~~~~~~d~~i~~~-----~ 232 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATV---HVMTRGAAARRLALALGAASAGGA--Y--DTPPEPLDAAILFA-----P 232 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeE---EEEeCChHHHHHHHHhCCceeccc--c--ccCcccceEEEECC-----C
Confidence 36788988986444 4444544 36544 33343 245778888775322210 0 01125577653211 1
Q ss_pred ccHHHHHHHhhhhccCCeEEEEEc
Q 027609 147 KSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 147 ~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.+ ..+.+.-+.|||||.+++--
T Consensus 233 -~~-~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 233 -AG-GLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred -cH-HHHHHHHHhhCCCcEEEEEe
Confidence 22 46888889999999998753
No 320
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=37.05 E-value=1.6e+02 Score=21.38 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=41.7
Q ss_pred cHHHHHHHhhhhccCCeEE-EEEcChhhHHHHHHHHHhcCCeEEEeecCCCeeEEEEEec
Q 027609 148 SLKAVVAEVDRILRPDGNL-ILRDDAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKT 206 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~~-ii~d~~~~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~K~ 206 (221)
-|.--+++.-+=|.+|+.+ ++.|+....+.|...++....++...+.++++-.++.+|.
T Consensus 21 ~Pll~~kk~l~~l~~G~~l~V~~dd~~~~~di~~~~~~~G~~~~~~~~~~g~~~~~I~k~ 80 (81)
T PRK00299 21 EPVMMVRKTVRNMQPGETLLIIADDPATTRDIPSFCRFMDHELLAQETEQLPYRYLIRKG 80 (81)
T ss_pred HHHHHHHHHHHcCCCCCEEEEEeCCccHHHHHHHHHHHcCCEEEEEEecCCEEEEEEEEC
Confidence 4555566666667899965 5567677889999999999999976555455555555664
No 321
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=36.99 E-value=1.1e+02 Score=25.22 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=22.1
Q ss_pred CC-CccCeeeeccccccccccHHHHHH--HhhhhccCCeEEEEEcC
Q 027609 129 YP-RTYDLLHADHLFSTIKKSLKAVVA--EVDRILRPDGNLILRDD 171 (221)
Q Consensus 129 yp-~sFDlVh~~~v~~h~~~d~~~vL~--EmdRVLRPGG~~ii~d~ 171 (221)
+| ...|++.|- |+ ..+. +..+-|||||++++...
T Consensus 62 s~~~~~D~lva~--------~~-~~~~~~~~~~~l~~gg~ii~d~~ 98 (177)
T TIGR02175 62 SQIYEPDYVVVL--------DP-TLLKTVNVTAGLKEDGILIVNTK 98 (177)
T ss_pred CccCCCCEEEEc--------CH-HHhCccchhhCcCCCeEEEEECC
Confidence 45 788988875 22 1221 23456899999998753
No 322
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=36.70 E-value=18 Score=33.21 Aligned_cols=19 Identities=5% Similarity=-0.153 Sum_probs=14.6
Q ss_pred CCCeEEeecCcchHHHHHH
Q 027609 70 FVRNVMDMRAVYGGFAAAL 88 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L 88 (221)
+..+|||+|||.|--+-..
T Consensus 116 ~~k~vLELgCg~~Lp~i~~ 134 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFA 134 (282)
T ss_pred cCceeEecCCcccccchhh
Confidence 5789999999999544443
No 323
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=36.61 E-value=3.3e+02 Score=25.19 Aligned_cols=106 Identities=23% Similarity=0.206 Sum_probs=60.9
Q ss_pred CeEEeecCcchH----HHHHHhhCC--CeEEEeccCCCCCCHHHHHHcCc-cceeccccccCCCCCCccCeeeecccccc
Q 027609 72 RNVMDMRAVYGG----FAAALKDLK--VWVMNVVPIESPDTLPIIYERGL-FGLYHDWCESFNTYPRTYDLLHADHLFST 144 (221)
Q Consensus 72 r~VLD~GcG~G~----faa~L~~~~--v~vmnv~~~d~~~~l~~a~eRGl-~~~~~d~~e~f~~yp~sFDlVh~~~v~~h 144 (221)
-..+=.|+|+|| .+.+|.++. +.++-|.|.... .+. .|. .-.+.-+...|.| ..||.-.-..++.
T Consensus 170 ~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~-~~~----~G~g~~~i~GIG~~~ip--~~~~~~~iD~v~~- 241 (300)
T COG0031 170 VDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSV-LLS----GGEGPHKIEGIGAGFVP--ENLDLDLIDEVIR- 241 (300)
T ss_pred CCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCc-ccC----CCCCCcccCCCCCCcCC--cccccccCceEEE-
Confidence 456778999997 566787763 444333343321 111 132 0012223334443 3333322222221
Q ss_pred ccccHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCC
Q 027609 145 IKKSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHW 187 (221)
Q Consensus 145 ~~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W 187 (221)
- +.++++..++|+.|-.|.++=..+=..+-...++++.+.=
T Consensus 242 -V-~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~a~~~~~ 282 (300)
T COG0031 242 -V-SDEEAIATARRLAREEGLLVGISSGAALAAALKLAKELPA 282 (300)
T ss_pred -E-CHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHHHHhcCC
Confidence 2 4689999999999999999977766666667777777753
No 324
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=36.27 E-value=2.5e+02 Score=24.63 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=47.7
Q ss_pred CCCeEEeecC--cchHHHHHHhh-CCCeEEEeccCCCCCCHHHHHHcCccceeccccccC----CCCC-CccCeeeeccc
Q 027609 70 FVRNVMDMRA--VYGGFAAALKD-LKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESF----NTYP-RTYDLLHADHL 141 (221)
Q Consensus 70 ~~r~VLD~Gc--G~G~faa~L~~-~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f----~~yp-~sFDlVh~~~v 141 (221)
...+||=.|+ +.|..++.+++ .|+.+..++ .++.++.+.+.|.. .+.+-.+.+ ...+ +.+|+|... +
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~---~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~d~vi~~-~ 251 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVA---GAAKEEAVRALGAD-TVILRDAPLLADAKALGGEPVDVVADV-V 251 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEe---CchhhHHHHhcCCe-EEEeCCCccHHHHHhhCCCCCcEEEec-C
Confidence 3568888887 34444444444 366654333 23356666666641 221100100 0112 568887643 1
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEE
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLIL 168 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii 168 (221)
. ...+.++-|.|+++|.++.
T Consensus 252 ----g---~~~~~~~~~~l~~~G~~v~ 271 (350)
T cd08274 252 ----G---GPLFPDLLRLLRPGGRYVT 271 (350)
T ss_pred ----C---HHHHHHHHHHhccCCEEEE
Confidence 1 2367788899999999985
No 325
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=35.75 E-value=1.2e+02 Score=25.51 Aligned_cols=90 Identities=18% Similarity=0.100 Sum_probs=46.8
Q ss_pred CCCeEEeecC--cchHHHHHHhhC-CCeEEEeccCCCCCCHHHHHHcCccceecc----ccccCCC-CC-CccCeeeecc
Q 027609 70 FVRNVMDMRA--VYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYERGLFGLYHD----WCESFNT-YP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~Gc--G~G~faa~L~~~-~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d----~~e~f~~-yp-~sFDlVh~~~ 140 (221)
...+||-.|| +.|..++.++.. |+.+..++.. ++..+.+.+.|....+.. ..+.+.. .+ +.+|++...
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~- 215 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKALGARVIAAASS--EEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDP- 215 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCC--HHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEEC-
Confidence 3678999998 344444444443 6554333221 235566666664222221 1111111 13 467776543
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.. ...+.++-+.++++|.++.-
T Consensus 216 ----~g---~~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 216 ----VG---GDVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred ----cc---HHHHHHHHHhhccCCEEEEE
Confidence 11 23455677889999988754
No 326
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.50 E-value=34 Score=31.23 Aligned_cols=101 Identities=18% Similarity=0.286 Sum_probs=64.5
Q ss_pred CCCCCCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHH----HHHcCc--cc--------ee-ccccccCCC--
Q 027609 66 INWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPI----IYERGL--FG--------LY-HDWCESFNT-- 128 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~----a~eRGl--~~--------~~-~d~~e~f~~-- 128 (221)
++.+ ++.|.=+|||.=+-+-.|-... .+.+..+|.|+++++ ..++|. ++ +. .||++.+..
T Consensus 89 ~~~g-~~qvViLgaGLDTRayRl~~~~--~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G 165 (297)
T COG3315 89 LDAG-IRQVVILGAGLDTRAYRLDWPK--GTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAG 165 (297)
T ss_pred HHhc-ccEEEEeccccccceeecCCCC--CCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcC
Confidence 6677 9999999999998887774432 346789999987763 334442 11 12 477777664
Q ss_pred CC-CccCeeeeccccccccccHH-HHHHHhhhhccCCeEEEEE
Q 027609 129 YP-RTYDLLHADHLFSTIKKSLK-AVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 129 yp-~sFDlVh~~~v~~h~~~d~~-~vL~EmdRVLRPGG~~ii~ 169 (221)
|+ +.-=++.|-+++..++.+-+ .+|.-+.-.+.||-.++..
T Consensus 166 ~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~ 208 (297)
T COG3315 166 FDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFD 208 (297)
T ss_pred CCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEe
Confidence 55 55556888899988775333 3344444444455555444
No 327
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=34.43 E-value=2.1e+02 Score=25.27 Aligned_cols=91 Identities=13% Similarity=0.072 Sum_probs=47.2
Q ss_pred CCCeEEeecCcc-hHHHHHHhhC-CC-eEEEeccCCCC-CCHHHHHHcCccceeccccccC---CC-CC-CccCeeeecc
Q 027609 70 FVRNVMDMRAVY-GGFAAALKDL-KV-WVMNVVPIESP-DTLPIIYERGLFGLYHDWCESF---NT-YP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG~-G~faa~L~~~-~v-~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f---~~-yp-~sFDlVh~~~ 140 (221)
+..+||-.|||. |.+++.|++. |. .+ ..++.+ +....+.+-|...++..-.+.+ .- -+ +.+|++....
T Consensus 163 ~g~~vlV~g~g~vg~~~~~la~~~G~~~v---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~ 239 (341)
T cd05281 163 SGKSVLITGCGPIGLMAIAVAKAAGASLV---IASDPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMS 239 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEE---EEECCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECC
Confidence 467788777653 4455555543 54 33 222332 3444555555422221100111 00 12 5677776431
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
. -...+.++.|.|+|+|.++.-.
T Consensus 240 -----g--~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 240 -----G--NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred -----C--CHHHHHHHHHHhccCCEEEEEc
Confidence 1 1356778889999999998753
No 328
>PF02522 Antibiotic_NAT: Aminoglycoside 3-N-acetyltransferase; InterPro: IPR003679 This family consists of bacterial aminoglycoside 3-N-acetyltransferases (2.3.1.81 from EC) that catalyse the reaction []: Acetyl-Co + a 2-deoxystreptamine antibiotic = CoA + N3'-acetyl-2-deoxystreptamine antibiotic The enzyme can use a range of antibiotics with 2-deoxystreptamine rings as acceptor for its acetyltransferase activity, this inactivates and confers resistance to gentamicin, kanamycin, tobramycin, neomycin and apramycin amongst others. For the kanamycin group antibiotics acetylation occurred at the 3"-amino group in arbekacin and amikacin, and at the 3-amino group in dibekacin as in the case of kanamycin reflecting the effect of the (S)-4-amino-2-hydroxybutyryl side chain which is present in arbekacin and amikacin, but absent in dibekacin and kanamycin [].; GO: 0046353 aminoglycoside 3-N-acetyltransferase activity, 0046677 response to antibiotic; PDB: 3SMA_D 3N0M_B 3IJW_B 3N0S_D 3SLB_C 3SLF_A 3KZL_D 3E4F_B 2NYG_E.
Probab=33.95 E-value=50 Score=28.71 Aligned_cols=35 Identities=17% Similarity=0.482 Sum_probs=26.3
Q ss_pred eeeec-cccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 135 LLHAD-HLFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 135 lVh~~-~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
|||++ ..|-.....++.++.-+..++.|+|.+++-
T Consensus 1 lVHsSl~~lG~v~gg~~~vi~aL~~~vg~~GTlvmP 36 (229)
T PF02522_consen 1 LVHSSLSSLGYVEGGAETVIDALLEVVGPEGTLVMP 36 (229)
T ss_dssp EEEE-TGGG-CBTTHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CeeechHHhCCCCCcHHHHHHHHHHHhccCCeEEEE
Confidence 68988 333333337889999999999999999987
No 329
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=33.94 E-value=1.3e+02 Score=27.05 Aligned_cols=91 Identities=12% Similarity=0.077 Sum_probs=48.3
Q ss_pred CCeEEeecCc-chHHHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccceecc----ccccCCC-CC-CccCeeeeccc
Q 027609 71 VRNVMDMRAV-YGGFAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFGLYHD----WCESFNT-YP-RTYDLLHADHL 141 (221)
Q Consensus 71 ~r~VLD~GcG-~G~faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d----~~e~f~~-yp-~sFDlVh~~~v 141 (221)
..+||-.||| .|.++..+++. |+.. ++.+..+ +..+.+.+-|...++.. +.+.+.. .+ +.||++...
T Consensus 183 g~~vLI~g~g~vG~a~i~lak~~G~~~--Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vld~-- 258 (363)
T cd08279 183 GDTVAVIGCGGVGLNAIQGARIAGASR--IIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAFEA-- 258 (363)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCc--EEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEEEc--
Confidence 5678877775 34444455443 5541 2333332 34455555554322221 1111111 12 568877532
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.. ....+.++.|.|+++|.++.-.
T Consensus 259 ---~~--~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 259 ---VG--RAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred ---CC--ChHHHHHHHHHhhcCCeEEEEe
Confidence 11 1356789999999999998753
No 330
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=33.67 E-value=1.3e+02 Score=26.86 Aligned_cols=91 Identities=20% Similarity=0.115 Sum_probs=51.1
Q ss_pred CCeEEeecCcc--hHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCCCccCeeeeccccccccc
Q 027609 71 VRNVMDMRAVY--GGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK 147 (221)
Q Consensus 71 ~r~VLD~GcG~--G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~ 147 (221)
..+|.=+|||. +.++..|.+.+. ...|...+.+ +.++.+.+.|+..... ......-+..|+|...---.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~-~~~V~~~dr~~~~~~~a~~~g~~~~~~---~~~~~~~~~aDvViiavp~~---- 77 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGL-AGEIVGADRSAETRARARELGLGDRVT---TSAAEAVKGADLVILCVPVG---- 77 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhCCCCceec---CCHHHHhcCCCEEEECCCHH----
Confidence 46788889987 346677777663 1134444543 3566666776532221 11111125678887652111
Q ss_pred cHHHHHHHhhhhccCCeEEEEE
Q 027609 148 SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
....++.++...++||..++..
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dv 99 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDV 99 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeC
Confidence 2356677777788999866543
No 331
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=33.65 E-value=1.5e+02 Score=26.30 Aligned_cols=90 Identities=20% Similarity=0.168 Sum_probs=47.0
Q ss_pred CCeEEeecCcc-hHHHHHHhhC-CCeEEEeccCCC-CCCHHHHHHcCccceec----cc---cccCCC-CC-CccCeeee
Q 027609 71 VRNVMDMRAVY-GGFAAALKDL-KVWVMNVVPIES-PDTLPIIYERGLFGLYH----DW---CESFNT-YP-RTYDLLHA 138 (221)
Q Consensus 71 ~r~VLD~GcG~-G~faa~L~~~-~v~vmnv~~~d~-~~~l~~a~eRGl~~~~~----d~---~e~f~~-yp-~sFDlVh~ 138 (221)
..+||=.|+|. |.++..|++. |+.+ +..+.. ++..+.+.+.|.-.++. ++ .+.+.. .+ +.||+|.-
T Consensus 163 g~~vlI~g~g~vG~~a~~lak~~G~~~--v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vld 240 (343)
T cd05285 163 GDTVLVFGAGPIGLLTAAVAKAFGATK--VVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIE 240 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcE--EEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEEE
Confidence 56777777654 4555556554 5541 222222 23455555544322221 10 111111 23 45888763
Q ss_pred ccccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 139 DHLFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 139 ~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.. . ....+.++-+.|+++|.++.-
T Consensus 241 ~~-----g--~~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 241 CT-----G--AESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CC-----C--CHHHHHHHHHHhhcCCEEEEE
Confidence 21 1 123678889999999999864
No 332
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=32.73 E-value=1.2e+02 Score=28.01 Aligned_cols=99 Identities=17% Similarity=0.233 Sum_probs=57.8
Q ss_pred CCeEEeecCcchHHHHHHhh----CCCeEEEeccCCCCC-CHHHHH-----Hc-Cc--cceeccccccCCCCCCccCe--
Q 027609 71 VRNVMDMRAVYGGFAAALKD----LKVWVMNVVPIESPD-TLPIIY-----ER-GL--FGLYHDWCESFNTYPRTYDL-- 135 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~----~~v~vmnv~~~d~~~-~l~~a~-----eR-Gl--~~~~~d~~e~f~~yp~sFDl-- 135 (221)
.....|+|+|.-.=++.|.+ ++. ....+|+|.+. .|+... +. || .++..|.|+++.-.|+.=--
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~-~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGS-LLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCC-cceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 67799999999987776655 343 23678999863 433211 11 12 23445666655433411111
Q ss_pred eeeccccccccc-cHHHHHHHhhhhccCCeEEEEEc
Q 027609 136 LHADHLFSTIKK-SLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 136 Vh~~~v~~h~~~-d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
+.-...+..+.. +-..+|.-+.-+|+||-+|.+..
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 112223333433 44556777888999999999983
No 333
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=32.24 E-value=1.9e+02 Score=25.46 Aligned_cols=79 Identities=18% Similarity=0.162 Sum_probs=46.6
Q ss_pred EEeecCcc--hHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCCCccCeeeeccccccccc-cH
Q 027609 74 VMDMRAVY--GGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK-SL 149 (221)
Q Consensus 74 VLD~GcG~--G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~-d~ 149 (221)
|.=+|+|. |+++.+|.++|.. |...|.+ +.++.+.++|.+....+ ... .-...|+|..+ .+. ..
T Consensus 3 I~IIG~G~mG~sla~~L~~~g~~---V~~~d~~~~~~~~a~~~g~~~~~~~---~~~-~~~~aDlVila-----vp~~~~ 70 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLGHT---VYGVSRRESTCERAIERGLVDEAST---DLS-LLKDCDLVILA-----LPIGLL 70 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHCCCcccccC---CHh-HhcCCCEEEEc-----CCHHHH
Confidence 44468875 5788888888753 4555553 46777777776432211 000 11456777654 221 34
Q ss_pred HHHHHHhhhhccCCe
Q 027609 150 KAVVAEVDRILRPDG 164 (221)
Q Consensus 150 ~~vL~EmdRVLRPGG 164 (221)
..++.|+...++|+-
T Consensus 71 ~~~~~~l~~~l~~~~ 85 (279)
T PRK07417 71 LPPSEQLIPALPPEA 85 (279)
T ss_pred HHHHHHHHHhCCCCc
Confidence 567788888888773
No 334
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=31.63 E-value=1.1e+02 Score=26.28 Aligned_cols=90 Identities=14% Similarity=0.164 Sum_probs=47.9
Q ss_pred CCCeEEeecC--cchHHHHHHhhC-CCeEEEeccCCCCCCHHHHHHcCccceecc----ccccCCC-CC-CccCeeeecc
Q 027609 70 FVRNVMDMRA--VYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYERGLFGLYHD----WCESFNT-YP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~Gc--G~G~faa~L~~~-~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d----~~e~f~~-yp-~sFDlVh~~~ 140 (221)
...+||=.|+ +.|.+++.+++. |+.+..++. ..+..+.+.+.|.-.++.. +.+.+.. .+ +.+|+|...
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~- 215 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVR--RDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISVALDS- 215 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEec--CHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEEC-
Confidence 3567777775 356666666554 665533332 2234455555554222211 1111111 12 568887632
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
. . . ..+.+..+.|+++|.++.-
T Consensus 216 -~---g-~--~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 216 -V---G-G--KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred -C---C-C--hhHHHHHHhhcCCcEEEEE
Confidence 1 1 2 3457888999999999854
No 335
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=31.07 E-value=51 Score=32.06 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=25.5
Q ss_pred CCCCeEEeecCcchHHHHHHhh-CCCeEEEeccCCCCC
Q 027609 69 SFVRNVMDMRAVYGGFAAALKD-LKVWVMNVVPIESPD 105 (221)
Q Consensus 69 ~~~r~VLD~GcG~G~faa~L~~-~~v~vmnv~~~d~~~ 105 (221)
..+..|.|+|+|-|-++..|.= .|. .|.++|.++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~l---sV~aIegsq 186 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGL---SVKAIEGSQ 186 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCc---eEEEeccch
Confidence 4688899999999999998843 354 456666654
No 336
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=30.57 E-value=1e+02 Score=29.72 Aligned_cols=87 Identities=11% Similarity=-0.003 Sum_probs=54.4
Q ss_pred CCCCeEEeecCc-chHHHH-HHhhCCCeEEEeccCCCCCCHHHHHHcCccceeccccccCCCCCCccCeeeecccccccc
Q 027609 69 SFVRNVMDMRAV-YGGFAA-ALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIK 146 (221)
Q Consensus 69 ~~~r~VLD~GcG-~G~faa-~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~ 146 (221)
-+.++||=+|+| .|.+++ +|..+|+..+-+.........++|.+-| +.+...-| +..|=+.+|+|.++..=.|+.
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~--~~~~~l~e-l~~~l~~~DvVissTsa~~~i 252 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG--AEAVALEE-LLEALAEADVVISSTSAPHPI 252 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC--CeeecHHH-HHHhhhhCCEEEEecCCCccc
Confidence 368899999999 887554 6888888766666665555666676665 33332211 333448999999885444332
Q ss_pred -c--cHHHHHHHhhh
Q 027609 147 -K--SLKAVVAEVDR 158 (221)
Q Consensus 147 -~--d~~~vL~EmdR 158 (221)
. +.+.++..-+|
T Consensus 253 i~~~~ve~a~~~r~~ 267 (414)
T COG0373 253 ITREMVERALKIRKR 267 (414)
T ss_pred cCHHHHHHHHhcccC
Confidence 1 44455554444
No 337
>PLN02256 arogenate dehydrogenase
Probab=30.13 E-value=1.6e+02 Score=26.86 Aligned_cols=104 Identities=14% Similarity=0.015 Sum_probs=53.6
Q ss_pred CCCCCCCeEEeecCcc--hHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccceeccccccCCCCCCccCeeeeccccc
Q 027609 66 INWSFVRNVMDMRAVY--GGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFS 143 (221)
Q Consensus 66 i~~~~~r~VLD~GcG~--G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~ 143 (221)
+..+...+|.=+|+|. |.++..|.+.|.. +..++.+...+.+.+.|.. .+.+..+ + .....|+|...
T Consensus 31 ~~~~~~~kI~IIG~G~mG~slA~~L~~~G~~---V~~~d~~~~~~~a~~~gv~-~~~~~~e-~--~~~~aDvVila---- 99 (304)
T PLN02256 31 LEKSRKLKIGIVGFGNFGQFLAKTFVKQGHT---VLATSRSDYSDIAAELGVS-FFRDPDD-F--CEEHPDVVLLC---- 99 (304)
T ss_pred hccCCCCEEEEEeeCHHHHHHHHHHHhCCCE---EEEEECccHHHHHHHcCCe-eeCCHHH-H--hhCCCCEEEEe----
Confidence 4455667788889884 4577778776643 3444443334555555542 1222111 0 12346777653
Q ss_pred cccc-cHHHHHHHh-hhhccCCeEEEEEcCh---hhHHHHHHHH
Q 027609 144 TIKK-SLKAVVAEV-DRILRPDGNLILRDDA---ETIVEVEDLV 182 (221)
Q Consensus 144 h~~~-d~~~vL~Em-dRVLRPGG~~ii~d~~---~~~~~i~~i~ 182 (221)
.+. ....++.|+ .-.++||. +++.-.. ...+.+++.+
T Consensus 100 -vp~~~~~~vl~~l~~~~l~~~~-iviDv~SvK~~~~~~~~~~l 141 (304)
T PLN02256 100 -TSILSTEAVLRSLPLQRLKRST-LFVDVLSVKEFPKNLLLQVL 141 (304)
T ss_pred -cCHHHHHHHHHhhhhhccCCCC-EEEecCCchHHHHHHHHHhC
Confidence 221 345667776 44567775 3343222 2345555554
No 338
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=29.89 E-value=2.9e+02 Score=22.86 Aligned_cols=110 Identities=17% Similarity=0.289 Sum_probs=60.3
Q ss_pred ecCcchHHHHHHhhCCCeEEEec--cCCCCC-----------CHHHHHHcCccceeccc-cccCCC-C--C-CccCeeee
Q 027609 77 MRAVYGGFAAALKDLKVWVMNVV--PIESPD-----------TLPIIYERGLFGLYHDW-CESFNT-Y--P-RTYDLLHA 138 (221)
Q Consensus 77 ~GcG~G~faa~L~~~~v~vmnv~--~~d~~~-----------~l~~a~eRGl~~~~~d~-~e~f~~-y--p-~sFDlVh~ 138 (221)
||=|-=+|+++|+..-....+++ ..|..+ .++...+.|.. ++|+. +..+.. + . +.||.|.-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~-V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVT-VLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCc-cccCCCCCcccccccccCCcCCEEEE
Confidence 56666689999988621122343 333322 23333444432 33321 122222 2 3 89999965
Q ss_pred cccccccc--------------ccHHHHHHHhhhhccCCeEEEEE--cChhh-HHHHHHHHHhcCCeE
Q 027609 139 DHLFSTIK--------------KSLKAVVAEVDRILRPDGNLILR--DDAET-IVEVEDLVKSLHWDV 189 (221)
Q Consensus 139 ~~v~~h~~--------------~d~~~vL~EmdRVLRPGG~~ii~--d~~~~-~~~i~~i~~~l~W~~ 189 (221)
+ |-|.- .-...++.-..++|+|+|.+.++ +..++ .=.|++++..-....
T Consensus 82 N--FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l 147 (166)
T PF10354_consen 82 N--FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVL 147 (166)
T ss_pred e--CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEE
Confidence 4 33322 03456788899999999999998 33332 223455666555544
No 339
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=29.40 E-value=69 Score=29.59 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=29.9
Q ss_pred cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHH-HHh
Q 027609 148 SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDL-VKS 184 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i-~~~ 184 (221)
..+.+|..+-.+|+|||.+++-.-|..-++|-+- ++.
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VISfHSLEDRiVK~~f~~ 255 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIISFHSLEDRIVKNFFRE 255 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHH
Confidence 7888999999999999999999888776666443 544
No 340
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=29.15 E-value=76 Score=30.33 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=16.9
Q ss_pred cHHHHHHHhhhhccCCeEEEEE
Q 027609 148 SLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
|...+|.==.+=|.|||.+++.
T Consensus 215 D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 215 DLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred HHHHHHHHHHHHhccCcEEEEE
Confidence 5666666556678999999998
No 341
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=29.04 E-value=1.9e+02 Score=26.84 Aligned_cols=105 Identities=11% Similarity=0.019 Sum_probs=57.9
Q ss_pred CCCeEEeecCcchHHHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccceeccccccCC-CCCCccCeeeeccccccccc-
Q 027609 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFN-TYPRTYDLLHADHLFSTIKK- 147 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~-~yp~sFDlVh~~~v~~h~~~- 147 (221)
..++||=+|--...|...|....+.+ -..+...........|. ....+ ..++ +.+..||+|..- ++.
T Consensus 19 ~~~~~l~~~~~~d~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~-~~~f~--~~~~~~~~~~~d~~~~~-----~pk~ 87 (342)
T PRK09489 19 EQRRVLFAGDLQDDLPAQLDAASVRV---HTQQFHHWQVLSRQMGD-NARFS--LVATAEDVADCDTLIYY-----WPKN 87 (342)
T ss_pred CCCcEEEEcCcchhhHHhhhccceEE---ehhhhHHHHHHHhhcCC-ceEec--cccCCccCCCCCEEEEE-----CCCC
Confidence 46788888988888888886332222 11111111111111121 11111 1111 123678876543 554
Q ss_pred --cHHHHHHHhhhhccCCeEEEEEc-ChhhHHHHHHHHHhc
Q 027609 148 --SLKAVVAEVDRILRPDGNLILRD-DAETIVEVEDLVKSL 185 (221)
Q Consensus 148 --d~~~vL~EmdRVLRPGG~~ii~d-~~~~~~~i~~i~~~l 185 (221)
.-...|.+..+.|+|||.+++.- ...-++.+.+++.+.
T Consensus 88 k~~~~~~l~~~~~~l~~g~~i~~~G~~~~g~~s~~k~~~~~ 128 (342)
T PRK09489 88 KQEAQFQLMNLLSLLPVGTDIFVVGENRSGVRSAEKMLADY 128 (342)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEeccccHHHHHHHHHHh
Confidence 55678899999999999998874 344455555555544
No 342
>PRK08507 prephenate dehydrogenase; Validated
Probab=28.49 E-value=1.7e+02 Score=25.59 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=46.0
Q ss_pred EEeecCcc--hHHHHHHhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCCCccCeeeeccccccccc-cH
Q 027609 74 VMDMRAVY--GGFAAALKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK-SL 149 (221)
Q Consensus 74 VLD~GcG~--G~faa~L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~-d~ 149 (221)
|.=+|+|. |+++..|.+.+. ...|...|.+ +.++.+.+.|.+....+..+ . ...|+|... .+. ..
T Consensus 3 I~iIG~G~mG~sla~~l~~~g~-~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~----~-~~aD~Vila-----vp~~~~ 71 (275)
T PRK08507 3 IGIIGLGLMGGSLGLALKEKGL-ISKVYGYDHNELHLKKALELGLVDEIVSFEE----L-KKCDVIFLA-----IPVDAI 71 (275)
T ss_pred EEEEccCHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHCCCCcccCCHHH----H-hcCCEEEEe-----CcHHHH
Confidence 44567776 567888887763 1234555553 35566667766422222111 1 226877654 232 45
Q ss_pred HHHHHHhhhhccCCeEEE
Q 027609 150 KAVVAEVDRILRPDGNLI 167 (221)
Q Consensus 150 ~~vL~EmdRVLRPGG~~i 167 (221)
..++.|+.. ++||..++
T Consensus 72 ~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 72 IEILPKLLD-IKENTTII 88 (275)
T ss_pred HHHHHHHhc-cCCCCEEE
Confidence 567778877 78776444
No 343
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=28.48 E-value=48 Score=32.97 Aligned_cols=86 Identities=12% Similarity=0.173 Sum_probs=49.3
Q ss_pred CcchHHHHHHh----hCCCeEEEeccCCCC-CCHHHHHHcCccceecccccc--CCCCC-CccCeeeeccccccccc-cH
Q 027609 79 AVYGGFAAALK----DLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCES--FNTYP-RTYDLLHADHLFSTIKK-SL 149 (221)
Q Consensus 79 cG~G~faa~L~----~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~--f~~yp-~sFDlVh~~~v~~h~~~-d~ 149 (221)
||+|.++..++ +++. +++-+|.. +.++.+.+.|..-.+.|-++. +..-. ...|++.+. ..+ +-
T Consensus 406 ~G~Gr~G~~va~~L~~~g~---~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~-----~~d~~~ 477 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKM---RITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVIT-----CNEPED 477 (601)
T ss_pred ecCchHHHHHHHHHHhCCC---CEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEE-----eCCHHH
Confidence 66666666543 4454 34666653 577888888877677774331 00012 445554443 332 22
Q ss_pred HHHHHHhhhhccCCeEEEEEcCh
Q 027609 150 KAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 150 ~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
...+.++-|=+.|.-.++.|-.+
T Consensus 478 n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 478 TMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred HHHHHHHHHHHCCCCeEEEEeCC
Confidence 23455667778899999988443
No 344
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=27.58 E-value=98 Score=25.13 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=26.5
Q ss_pred CC-CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 129 YP-RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 129 yp-~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
++ ..+|++.|- |+ ..+.....-|||||++++-...
T Consensus 53 ~~~~~~Dilv~l--------~~-~~~~~~~~~l~~~g~vi~ns~~ 88 (173)
T PF01558_consen 53 PPVGEADILVAL--------DP-EALERHLKGLKPGGVVIINSSL 88 (173)
T ss_dssp S-TSSESEEEES--------SH-HHHHHCGTTCETTEEEEEETTT
T ss_pred cccCCCCEEEEc--------CH-HHHHHHhcCcCcCeEEEEECCC
Confidence 45 899999985 44 4444777779999999999754
No 345
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=27.48 E-value=2.2e+02 Score=19.90 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=37.2
Q ss_pred HHHHHHHhhhhccCCeE-EEEEcChhhHHHHHHHHHhcCCeEEEeecCCCeeEEEEE
Q 027609 149 LKAVVAEVDRILRPDGN-LILRDDAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVH 204 (221)
Q Consensus 149 ~~~vL~EmdRVLRPGG~-~ii~d~~~~~~~i~~i~~~l~W~~~~~~~~~~e~~l~~~ 204 (221)
|.--.++.-+=|.+|.. .++.|+......|.+.++...+++.....++++-.++.+
T Consensus 12 Pvi~~kkal~~l~~G~~l~V~~d~~~s~~ni~~~~~~~g~~v~~~~~~~~~~~~~i~ 68 (69)
T cd03422 12 PAIATLEALPSLKPGEILEVISDCPQSINNIPIDARNHGYKVLAIEQSGPTIRYLIQ 68 (69)
T ss_pred HHHHHHHHHHcCCCCCEEEEEecCchHHHHHHHHHHHcCCEEEEEEecCCEEEEEEE
Confidence 33334444455678885 566677778899999999999999765444444444434
No 346
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=27.21 E-value=1.5e+02 Score=26.10 Aligned_cols=92 Identities=14% Similarity=0.084 Sum_probs=48.2
Q ss_pred CCCeEEeecCc-chHHHHHHhh-CCCeEEEeccCCCC-CCHHHHHHcCccceec----cccccCCCC-C-CccCeeeecc
Q 027609 70 FVRNVMDMRAV-YGGFAAALKD-LKVWVMNVVPIESP-DTLPIIYERGLFGLYH----DWCESFNTY-P-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG-~G~faa~L~~-~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~----d~~e~f~~y-p-~sFDlVh~~~ 140 (221)
+..+||-.||| .|.+++.++. +|+.. +..++.+ ...+.+.+.|...++. ++.+.+..+ + +.||++.-.
T Consensus 161 ~g~~vlI~~~g~vg~~a~~la~~~G~~~--v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~- 237 (340)
T TIGR00692 161 SGKSVLVTGAGPIGLMAIAVAKASGAYP--VIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEM- 237 (340)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcE--EEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEEC-
Confidence 35667766664 3344444544 35431 2233333 3555666666422221 111111112 3 568887542
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
+. -...+.++.+.|+++|.++.-.
T Consensus 238 ~g------~~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 238 SG------APKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred CC------CHHHHHHHHHhhcCCCEEEEEc
Confidence 11 1356889999999999998753
No 347
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=27.02 E-value=88 Score=30.46 Aligned_cols=36 Identities=8% Similarity=0.199 Sum_probs=26.8
Q ss_pred cHHHHHHHhhhhccCCeEEEEEcChh--hHHHHHHHHH
Q 027609 148 SLKAVVAEVDRILRPDGNLILRDDAE--TIVEVEDLVK 183 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~~ii~d~~~--~~~~i~~i~~ 183 (221)
....+..++.+.|++|-.+|++.+.+ ..+++.+.+.
T Consensus 105 ~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~ 142 (473)
T PLN02353 105 YWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILT 142 (473)
T ss_pred HHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHH
Confidence 46788999999999988888887654 3456655544
No 348
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=26.64 E-value=68 Score=29.33 Aligned_cols=91 Identities=20% Similarity=0.176 Sum_probs=54.9
Q ss_pred CCeEEeec--CcchHHHHHHhhC-CCeEEEeccCCCCCCHHHHHHcCcccee----ccccccCCC-CC-CccCeeeeccc
Q 027609 71 VRNVMDMR--AVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYERGLFGLY----HDWCESFNT-YP-RTYDLLHADHL 141 (221)
Q Consensus 71 ~r~VLD~G--cG~G~faa~L~~~-~v~vmnv~~~d~~~~l~~a~eRGl~~~~----~d~~e~f~~-yp-~sFDlVh~~~v 141 (221)
..+||=.| .|.|.++..|++. |..+ +.-+..++-.+++.+-|-.-++ +||.+...- .. +.+|+|...
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~--v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~-- 218 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATV--VAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDT-- 218 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcE--EEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEEC--
Confidence 67788777 4667899999886 5443 2222233344466666632111 234443321 22 568888765
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
--...+.+.-+.|+|+|.++.-..
T Consensus 219 ------vG~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 219 ------VGGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred ------CCHHHHHHHHHHhccCCEEEEEec
Confidence 235677778899999999988644
No 349
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=26.47 E-value=1.1e+02 Score=22.53 Aligned_cols=91 Identities=20% Similarity=0.265 Sum_probs=46.5
Q ss_pred CcchHHHHHHhhC---CCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCCCccCeeeeccccccccc-cHHHHH
Q 027609 79 AVYGGFAAALKDL---KVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK-SLKAVV 153 (221)
Q Consensus 79 cG~G~faa~L~~~---~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~-d~~~vL 153 (221)
||+|.++..+++. +-+ +++-+|.. +..+.+.++|+.-+++|-.+. .++ +..++-+|..++.-..+ ..-..+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~--~vvvid~d~~~~~~~~~~~~~~i~gd~~~~-~~l-~~a~i~~a~~vv~~~~~d~~n~~~ 79 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGI--DVVVIDRDPERVEELREEGVEVIYGDATDP-EVL-ERAGIEKADAVVILTDDDEENLLI 79 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHTTSEEEES-TTSH-HHH-HHTTGGCESEEEEESSSHHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCC--EEEEEECCcHHHHHHHhcccccccccchhh-hHH-hhcCccccCEEEEccCCHHHHHHH
Confidence 6777776665442 222 34555553 467778888876566653221 111 22233333333332332 223344
Q ss_pred HHhhhhccCCeEEEEEcChh
Q 027609 154 AEVDRILRPDGNLILRDDAE 173 (221)
Q Consensus 154 ~EmdRVLRPGG~~ii~d~~~ 173 (221)
...-|=+-|...++.+-..+
T Consensus 80 ~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 80 ALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp HHHHHHHTTTSEEEEEESSH
T ss_pred HHHHHHHCCCCeEEEEECCH
Confidence 55666677888888885543
No 350
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=26.43 E-value=1.5e+02 Score=26.00 Aligned_cols=92 Identities=17% Similarity=0.113 Sum_probs=45.9
Q ss_pred CCCeEEeecC--cchHHHHHHhh-CCCeEEEeccCCCC--CCHHHHHHcCccceec-------cccccCCCC-CCccCee
Q 027609 70 FVRNVMDMRA--VYGGFAAALKD-LKVWVMNVVPIESP--DTLPIIYERGLFGLYH-------DWCESFNTY-PRTYDLL 136 (221)
Q Consensus 70 ~~r~VLD~Gc--G~G~faa~L~~-~~v~vmnv~~~d~~--~~l~~a~eRGl~~~~~-------d~~e~f~~y-p~sFDlV 136 (221)
+..+||=.|+ +.|.++..++. .|+.+..++..+.. +..+.+.+-|...++. ++.+.+..+ ++.||+|
T Consensus 146 ~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~d~v 225 (341)
T cd08290 146 PGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAPGGRPKLA 225 (341)
T ss_pred CCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHcCCCceEE
Confidence 4678888776 34445555544 36665444332211 2345554444322221 111111111 2357776
Q ss_pred eeccccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 137 HADHLFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 137 h~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
... .- + ..+.+..+.|+++|.++.-
T Consensus 226 ld~-----~g-~--~~~~~~~~~l~~~G~~v~~ 250 (341)
T cd08290 226 LNC-----VG-G--KSATELARLLSPGGTMVTY 250 (341)
T ss_pred EEC-----cC-c--HhHHHHHHHhCCCCEEEEE
Confidence 642 11 1 2455788999999999854
No 351
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=26.14 E-value=63 Score=29.05 Aligned_cols=22 Identities=9% Similarity=-0.006 Sum_probs=18.6
Q ss_pred CCCeEEeecCcchHHHHHHhhC
Q 027609 70 FVRNVMDMRAVYGGFAAALKDL 91 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~~ 91 (221)
+...++++|||-|.++.++..-
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~ 39 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQA 39 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHH
Confidence 3568999999999999988664
No 352
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=26.09 E-value=72 Score=31.60 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=56.0
Q ss_pred CCCeEEeecCcchHHHHHHh--hCCCeEEEeccCCCC-CCHHHHHHcCccceeccc--------------cccCC-----
Q 027609 70 FVRNVMDMRAVYGGFAAALK--DLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDW--------------CESFN----- 127 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~--~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~--------------~e~f~----- 127 (221)
...+|+=+|||.=|+++... ..|+. +.-+|.. +.++.+.+-|..-+.-+. .+.+.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~---V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~ 239 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAI---VRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEME 239 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHH
Confidence 45799999999988777543 33543 3444443 355666554431100010 00111
Q ss_pred CCC---CccCeeeeccccccccccHHHHHHHhhhhccCCeEEE
Q 027609 128 TYP---RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLI 167 (221)
Q Consensus 128 ~yp---~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~i 167 (221)
.++ ..+|+|++.-+..--+ .|.-+..||-+.+|||+.++
T Consensus 240 ~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 240 LFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEE
Confidence 022 6799998875443323 56678999999999998876
No 353
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=25.80 E-value=87 Score=28.29 Aligned_cols=68 Identities=21% Similarity=0.229 Sum_probs=44.9
Q ss_pred eeccccccCCCCCC---ccCeeeeccccccccccH----HHHHHHhhhhccCCeEEEEEcChhhHHHHHHHHHhcCCeEE
Q 027609 118 LYHDWCESFNTYPR---TYDLLHADHLFSTIKKSL----KAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR 190 (221)
Q Consensus 118 ~~~d~~e~f~~yp~---sFDlVh~~~v~~h~~~d~----~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i~~~l~W~~~ 190 (221)
.+.|-.+.++..++ .+|..|-. .|+... || ..+|.+|.|+.+|||.+.--... --+++=+.....++.
T Consensus 151 ~~gd~~~~~p~~~~~~~~~dAwflD-gFsP~k-NP~mW~~e~l~~~a~~~~~~~~l~t~ssA---~~vRr~L~~aGF~v~ 225 (252)
T COG4121 151 VIGDAGDGIPPVPRRRPGTDAWFLD-GFRPVK-NPEMWEDELLNLMARIPYRDPTLATFAAA---IAVRRRLEQAGFTVE 225 (252)
T ss_pred eeeehhhcCCcccccccCccEEecC-CccccC-ChhhccHHHHHHHHhhcCCCCceechHHH---HHHHHHHHHcCceee
Confidence 34555555666665 78988865 676555 66 67899999999999998643332 223444555666654
No 354
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=25.54 E-value=2.2e+02 Score=24.54 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=48.2
Q ss_pred CCeEEeecC--cchHHHHHHhh-CCCeEEEeccCCCCCCHHHHHHcCcccee--cc-ccccCCCCC-CccCeeeeccccc
Q 027609 71 VRNVMDMRA--VYGGFAAALKD-LKVWVMNVVPIESPDTLPIIYERGLFGLY--HD-WCESFNTYP-RTYDLLHADHLFS 143 (221)
Q Consensus 71 ~r~VLD~Gc--G~G~faa~L~~-~~v~vmnv~~~d~~~~l~~a~eRGl~~~~--~d-~~e~f~~yp-~sFDlVh~~~v~~ 143 (221)
..+||=.|+ +.|.+++.+++ +|+.+..++.. ++-.+.+.+-|...++ ++ ..+.+..++ +.+|+|...
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~--~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~---- 220 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGK--ADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDP---- 220 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecC--HHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEEC----
Confidence 467888887 34445555554 36654333222 2356666666642222 11 011111223 457776432
Q ss_pred cccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 144 TIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 144 h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
.. ...+.+.-+.|+++|.++.--
T Consensus 221 -~g---~~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 221 -VG---GKTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred -Cc---HHHHHHHHHHhhcCCEEEEEe
Confidence 11 246778889999999998763
No 355
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=25.31 E-value=99 Score=27.08 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=18.2
Q ss_pred cccccHHHHHHHhhhhccCCeEEEEEcCh
Q 027609 144 TIKKSLKAVVAEVDRILRPDGNLILRDDA 172 (221)
Q Consensus 144 h~~~d~~~vL~EmdRVLRPGG~~ii~d~~ 172 (221)
|..++-...|.-..-+|.||+|+|+-|+.
T Consensus 121 H~~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 121 HTHEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp ---SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred ccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 33335666777788999999999999875
No 356
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=25.27 E-value=1.7e+02 Score=24.85 Aligned_cols=90 Identities=19% Similarity=0.179 Sum_probs=48.9
Q ss_pred CCCeEEeecC--cchHHHHHHhhC-CCeEEEeccCCCCCCHHHHHHcCccceecc---ccccCCCCCCccCeeeeccccc
Q 027609 70 FVRNVMDMRA--VYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYERGLFGLYHD---WCESFNTYPRTYDLLHADHLFS 143 (221)
Q Consensus 70 ~~r~VLD~Gc--G~G~faa~L~~~-~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d---~~e~f~~yp~sFDlVh~~~v~~ 143 (221)
...+||=.|+ +.|.++..+++. |+.+..++.. ++..+.+.+.|...++.+ ..+.+..+.+.+|++...
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~d~vl~~---- 215 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRS--PERAALLKELGADEVVIDDGAIAEQLRAAPGGFDKVLEL---- 215 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC--HHHHHHHHhcCCcEEEecCccHHHHHHHhCCCceEEEEC----
Confidence 3567777776 455565555554 6665433322 234556666664222211 111111123457776532
Q ss_pred cccccHHHHHHHhhhhccCCeEEEEE
Q 027609 144 TIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 144 h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.. ...+.++-+.|+++|.++..
T Consensus 216 -~~---~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 216 -VG---TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred -CC---hHHHHHHHHHhccCCEEEEE
Confidence 11 24678888999999999865
No 357
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=25.19 E-value=1.5e+02 Score=24.82 Aligned_cols=51 Identities=24% Similarity=0.393 Sum_probs=34.4
Q ss_pred CCccCeeeeccccccccccHHHHHHHh-hhhccCCeEEEEEcChhhHHHHHHHH
Q 027609 130 PRTYDLLHADHLFSTIKKSLKAVVAEV-DRILRPDGNLILRDDAETIVEVEDLV 182 (221)
Q Consensus 130 p~sFDlVh~~~v~~h~~~d~~~vL~Em-dRVLRPGG~~ii~d~~~~~~~i~~i~ 182 (221)
.++||+|.+.==| +.++-..-..+. +-++||++.+++.+...+.+.+++++
T Consensus 84 ~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~Tg~~~~~~~~~ll 135 (162)
T PF10237_consen 84 KGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCTGEEMEELIKKLL 135 (162)
T ss_pred CCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEecHHHHHHHHHHHh
Confidence 3899999998545 222222223444 44558999999999887777777766
No 358
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.17 E-value=84 Score=27.19 Aligned_cols=45 Identities=11% Similarity=0.245 Sum_probs=35.9
Q ss_pred CccCeeeeccccccc-----------cccHHHHHHHhhhhccCCeEEEEEcChhhH
Q 027609 131 RTYDLLHADHLFSTI-----------KKSLKAVVAEVDRILRPDGNLILRDDAETI 175 (221)
Q Consensus 131 ~sFDlVh~~~v~~h~-----------~~d~~~vL~EmdRVLRPGG~~ii~d~~~~~ 175 (221)
+..|+||.+.|+..+ .+|.+.++.-|+-||.|+-.+|+..+.|.-
T Consensus 49 g~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~Pv~ 104 (183)
T cd01842 49 GRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMPVA 104 (183)
T ss_pred CceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCCCC
Confidence 667999998888532 238888888899999999999999887753
No 359
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=25.05 E-value=1e+02 Score=28.61 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=33.0
Q ss_pred cHHHHHHHhhhhccCCeEEEEEcChhhHHHH-HHHHHhcCCe
Q 027609 148 SLKAVVAEVDRILRPDGNLILRDDAETIVEV-EDLVKSLHWD 188 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i-~~i~~~l~W~ 188 (221)
..+..|..+-.+|+|||.+++-.-|..-++| +..++...=.
T Consensus 219 ~L~~~L~~a~~~L~~gGrl~VISFHSLEDRiVK~~f~~~~~~ 260 (310)
T PF01795_consen 219 ELERGLEAAPDLLKPGGRLVVISFHSLEDRIVKQFFRELAKS 260 (310)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEecchhhHHHHHHHHHhccc
Confidence 7889999999999999999999888877776 5556655444
No 360
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=24.52 E-value=69 Score=31.29 Aligned_cols=86 Identities=20% Similarity=0.243 Sum_probs=48.0
Q ss_pred CcchHHHHH----HhhCCCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCC---C-CccCeeeeccccccccccH
Q 027609 79 AVYGGFAAA----LKDLKVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTY---P-RTYDLLHADHLFSTIKKSL 149 (221)
Q Consensus 79 cG~G~faa~----L~~~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~y---p-~sFDlVh~~~v~~h~~~d~ 149 (221)
||+|.++.. |.+++.. ++-+|.. +.++.+.+.|..-++.|-++. ..+ . +.+|.+.+. ..+|.
T Consensus 423 ~G~G~~G~~la~~L~~~g~~---vvvId~d~~~~~~~~~~g~~~i~GD~~~~-~~L~~a~i~~a~~viv~-----~~~~~ 493 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIP---LVVIETSRTRVDELRERGIRAVLGNAANE-EIMQLAHLDCARWLLLT-----IPNGY 493 (558)
T ss_pred ECCChHHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHCCCeEEEcCCCCH-HHHHhcCccccCEEEEE-----cCChH
Confidence 455555544 4445543 4556653 467777888877677764331 111 2 456654432 23222
Q ss_pred H-HHHHHhhhhccCCeEEEEEcChh
Q 027609 150 K-AVVAEVDRILRPDGNLILRDDAE 173 (221)
Q Consensus 150 ~-~vL~EmdRVLRPGG~~ii~d~~~ 173 (221)
+ ..+...-|-+.|.-.++.|-.++
T Consensus 494 ~~~~iv~~~~~~~~~~~iiar~~~~ 518 (558)
T PRK10669 494 EAGEIVASAREKRPDIEIIARAHYD 518 (558)
T ss_pred HHHHHHHHHHHHCCCCeEEEEECCH
Confidence 2 23555567778999999886553
No 361
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=24.25 E-value=90 Score=29.81 Aligned_cols=45 Identities=11% Similarity=0.143 Sum_probs=30.7
Q ss_pred hhhhhhHHHHHhhhhhccc-CCCCCCCeEEeecCcchHHHHHHhhC
Q 027609 47 ADYQHWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYGGFAAALKDL 91 (221)
Q Consensus 47 ~d~~~W~~~v~~~Y~~~L~-i~~~~~r~VLD~GcG~G~faa~L~~~ 91 (221)
+=+..+++.+.......+. +..-.-..++.+|+|.|.|+..++..
T Consensus 53 els~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~ 98 (370)
T COG1565 53 ELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRT 98 (370)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHH
Confidence 4456777777663334443 33334567999999999999998764
No 362
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=23.95 E-value=2e+02 Score=25.81 Aligned_cols=91 Identities=13% Similarity=0.109 Sum_probs=46.6
Q ss_pred CCCeEEeecCc-chHHHHHHhh-CCCeEEEeccCCCC-CCHHHHHHcCccceec----cccccCCC-CC-CccCeeeecc
Q 027609 70 FVRNVMDMRAV-YGGFAAALKD-LKVWVMNVVPIESP-DTLPIIYERGLFGLYH----DWCESFNT-YP-RTYDLLHADH 140 (221)
Q Consensus 70 ~~r~VLD~GcG-~G~faa~L~~-~~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~----d~~e~f~~-yp-~sFDlVh~~~ 140 (221)
...+||=.|+| .|.++..+++ .|+.+ ++.++.+ +..+.+.+.|...++. ++.+.+.. .+ +.||+|...
T Consensus 187 ~g~~VlI~g~g~vG~~~~~lak~~G~~~--vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld~- 263 (367)
T cd08263 187 PGETVAVIGVGGVGSSAIQLAKAFGASP--IIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVVEA- 263 (367)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCe--EEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEEEEe-
Confidence 35567755654 3344444444 35541 2333322 3455555555432222 11111111 13 568887643
Q ss_pred ccccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 141 LFSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 141 v~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.. .. ..+.++.|.|+|+|.++.-
T Consensus 264 ----vg-~~-~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 264 ----LG-KP-ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred ----CC-CH-HHHHHHHHHHhcCCEEEEE
Confidence 22 11 3678888999999999865
No 363
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=23.79 E-value=81 Score=28.63 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=18.9
Q ss_pred cHHHHHHHhhhhccCCeEEEEEcC
Q 027609 148 SLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
+....|.+-+||| |||++.++|-
T Consensus 84 ~l~~~l~~~~ril-pgg~~~~s~l 106 (268)
T TIGR01743 84 ELCQSLSEPERIL-PGGYLYLTDI 106 (268)
T ss_pred HHHHHHHHCCCcc-cCCeEEechh
Confidence 6677788888887 9999999964
No 364
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=23.62 E-value=2e+02 Score=28.35 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=45.6
Q ss_pred CCeEEeecCcchH--HHHHHhhCCCeEEEeccCCCCC---CHH---------HHHHcCccc--------------eeccc
Q 027609 71 VRNVMDMRAVYGG--FAAALKDLKVWVMNVVPIESPD---TLP---------IIYERGLFG--------------LYHDW 122 (221)
Q Consensus 71 ~r~VLD~GcG~G~--faa~L~~~~v~vmnv~~~d~~~---~l~---------~a~eRGl~~--------------~~~d~ 122 (221)
.-.|+=+|+|.+| +|++|.+.|-.| .|...|.++ ... .-.+-|+.. ++.|-
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrV-hVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~g 123 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRV-HVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKDG 123 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEE-EEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeCC
Confidence 3448889999986 777888887544 567777532 211 122223311 22233
Q ss_pred cccCCCCC-CccCeeeecccccc
Q 027609 123 CESFNTYP-RTYDLLHADHLFST 144 (221)
Q Consensus 123 ~e~f~~yp-~sFDlVh~~~v~~h 144 (221)
.+.-.||| ..|+-..+...|||
T Consensus 124 k~v~~pyP~~~f~~d~~GrsFhn 146 (509)
T KOG1298|consen 124 KEVDLPYPLKNFPSDPSGRSFHN 146 (509)
T ss_pred ceeeccCCCcCCCCCcccceeec
Confidence 34445799 99999888999985
No 365
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=23.35 E-value=2.7e+02 Score=27.61 Aligned_cols=32 Identities=28% Similarity=0.319 Sum_probs=22.1
Q ss_pred CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 131 RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 131 ~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
...|++.|- |+..+..- ..-|||||++|+.+.
T Consensus 63 ~~~Dilval--------~~~~~~~~-~~~lk~gg~vI~ns~ 94 (562)
T TIGR03710 63 DRVDVLVAL--------DPETLEEH-LDELRPGGIIIYDSD 94 (562)
T ss_pred CCCcEEEEc--------CHHHHHHH-hcccCCCeEEEEECC
Confidence 888998884 34444332 344899999998854
No 366
>PRK05844 pyruvate flavodoxin oxidoreductase subunit gamma; Validated
Probab=23.32 E-value=2.3e+02 Score=23.61 Aligned_cols=32 Identities=13% Similarity=0.015 Sum_probs=20.2
Q ss_pred CccCeeeeccccccccccHHHHHH-HhhhhccCCeEEEEEc
Q 027609 131 RTYDLLHADHLFSTIKKSLKAVVA-EVDRILRPDGNLILRD 170 (221)
Q Consensus 131 ~sFDlVh~~~v~~h~~~d~~~vL~-EmdRVLRPGG~~ii~d 170 (221)
...|++.|- |+..+.. .+..-|||||++++..
T Consensus 65 ~~~Dilv~l--------d~~~~~~~~~~~~l~~~g~iiins 97 (186)
T PRK05844 65 MQPDYVLVI--------DPGLVFIENIFANEKEDTKYIITT 97 (186)
T ss_pred CCCCEEEEe--------cHHHhccccHhcCcCCCeEEEEEC
Confidence 488988874 3322211 2245679999998773
No 367
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=22.88 E-value=1.1e+02 Score=28.12 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=29.8
Q ss_pred cHHHHHHHhhhhccCCeEEEEEcChhhHHHHHHH-HHh
Q 027609 148 SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDL-VKS 184 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~~ii~d~~~~~~~i~~i-~~~ 184 (221)
..+.+|...-.+|+|||.+++-.-|..-+++-+- ++.
T Consensus 214 ~L~~~L~~~~~~L~~gGrl~visfHSlEDriVK~~f~~ 251 (296)
T PRK00050 214 ELERALEAALDLLKPGGRLAVISFHSLEDRIVKRFFRE 251 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHH
Confidence 7888999999999999999999888776776443 443
No 368
>PRK06853 indolepyruvate oxidoreductase subunit beta; Reviewed
Probab=22.00 E-value=1.6e+02 Score=24.58 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=22.2
Q ss_pred CccCeeeeccccccccccHHHHHHHhhhhccCCeEEEEEcC
Q 027609 131 RTYDLLHADHLFSTIKKSLKAVVAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 131 ~sFDlVh~~~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d~ 171 (221)
...|+|.|. |+..+ .+...-|||||++++...
T Consensus 67 ~~~D~lva~--------d~~~~-~~~~~~lk~gg~ii~n~~ 98 (197)
T PRK06853 67 GKADLLLAF--------EPLEA-LRYLPYLKKGGKVVVNTQ 98 (197)
T ss_pred CCCCEEEEe--------CHHHH-HHHHHhcCCCcEEEEECC
Confidence 389999986 33332 344445899999999854
No 369
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=21.93 E-value=2.6e+02 Score=18.82 Aligned_cols=46 Identities=15% Similarity=0.266 Sum_probs=31.4
Q ss_pred HHHHHhhhhccCCeEE-EEEcChhhHHHHHHHHHhcCCeEEEeecCCC
Q 027609 151 AVVAEVDRILRPDGNL-ILRDDAETIVEVEDLVKSLHWDVRMIYTNDN 197 (221)
Q Consensus 151 ~vL~EmdRVLRPGG~~-ii~d~~~~~~~i~~i~~~l~W~~~~~~~~~~ 197 (221)
.+..+|++ |.+|..+ ++.|.......+.+.++...+++.....+++
T Consensus 15 ~~~~~l~~-l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~~~~~~~ 61 (69)
T cd00291 15 KTKKALEK-LKSGEVLEVLLDDPGAVEDIPAWAKETGHEVLEVEEEGG 61 (69)
T ss_pred HHHHHHhc-CCCCCEEEEEecCCcHHHHHHHHHHHcCCEEEEEEEeCC
Confidence 34444444 6778765 5556666789999999999999765544443
No 370
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=21.51 E-value=4.8e+02 Score=21.74 Aligned_cols=89 Identities=17% Similarity=0.177 Sum_probs=46.0
Q ss_pred CCCeEEeecC--cchHHHHHHhh-CCCeEEEeccCCCCCCHHHHHHcCccceeccccccCC--CCCCccCeeeecccccc
Q 027609 70 FVRNVMDMRA--VYGGFAAALKD-LKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFN--TYPRTYDLLHADHLFST 144 (221)
Q Consensus 70 ~~r~VLD~Gc--G~G~faa~L~~-~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d~~e~f~--~yp~sFDlVh~~~v~~h 144 (221)
...+||=.|| +.|..++.+++ .++.+..++. .. ..+.+.+.|....+..-...+. ...+.+|++...
T Consensus 144 ~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~--~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~~----- 215 (309)
T cd05289 144 AGQTVLIHGAAGGVGSFAVQLAKARGARVIATAS--AA-NADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDT----- 215 (309)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEec--ch-hHHHHHHcCCCEEEeCCCCchhhccCCCCceEEEEC-----
Confidence 3567887776 23334344433 3665533332 22 4566655554222221111111 122567776542
Q ss_pred ccccHHHHHHHhhhhccCCeEEEEE
Q 027609 145 IKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 145 ~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.. ...+.++-+-|+|+|.++.-
T Consensus 216 ~~---~~~~~~~~~~l~~~g~~v~~ 237 (309)
T cd05289 216 VG---GETLARSLALVKPGGRLVSI 237 (309)
T ss_pred Cc---hHHHHHHHHHHhcCcEEEEE
Confidence 12 23677888999999999864
No 371
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=21.43 E-value=67 Score=29.71 Aligned_cols=21 Identities=10% Similarity=-0.081 Sum_probs=14.1
Q ss_pred CCCCCeEEeecCcchHHHHHH
Q 027609 68 WSFVRNVMDMRAVYGGFAAAL 88 (221)
Q Consensus 68 ~~~~r~VLD~GcG~G~faa~L 88 (221)
....-+|.|+||..|.-+-.+
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~ 34 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLA 34 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHH
T ss_pred CCCceEEEecCCCCCccHHHH
Confidence 445778999999999855544
No 372
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=20.89 E-value=2.1e+02 Score=22.19 Aligned_cols=100 Identities=18% Similarity=0.148 Sum_probs=54.6
Q ss_pred eecCcc-hH-HHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccceecc------ccccCCCC--C-CccCeeeecccccc
Q 027609 76 DMRAVY-GG-FAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHD------WCESFNTY--P-RTYDLLHADHLFST 144 (221)
Q Consensus 76 D~GcG~-G~-faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d------~~e~f~~y--p-~sFDlVh~~~v~~h 144 (221)
=+|+|. |. ||+.|.+.+..| +-+..++.++...++|+.-...+ --...... + ..||+|... .--
T Consensus 3 I~G~GaiG~~~a~~L~~~g~~V---~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~--vKa 77 (151)
T PF02558_consen 3 IIGAGAIGSLYAARLAQAGHDV---TLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVA--VKA 77 (151)
T ss_dssp EESTSHHHHHHHHHHHHTTCEE---EEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE---SSG
T ss_pred EECcCHHHHHHHHHHHHCCCce---EEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEE--ecc
Confidence 356653 44 555565655433 33333335666777776311111 00001112 3 789998764 111
Q ss_pred ccccHHHHHHHhhhhccCCeEEEEEc-ChhhHHHHHHHH
Q 027609 145 IKKSLKAVVAEVDRILRPDGNLILRD-DAETIVEVEDLV 182 (221)
Q Consensus 145 ~~~d~~~vL~EmdRVLRPGG~~ii~d-~~~~~~~i~~i~ 182 (221)
+ +...++..+.+.+.|...+++-- .....+.+++.+
T Consensus 78 ~--~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 78 Y--QLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF 114 (151)
T ss_dssp G--GHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred c--chHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence 1 46789999999999997776653 344556666554
No 373
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=20.79 E-value=5.8e+02 Score=22.36 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=49.9
Q ss_pred CCCeEEeecCcc-hHHHHHHhh-CCC-eEEEeccCCC-CCCHHHHHHcCccceec----cccccCCCC-C-CccCeeeec
Q 027609 70 FVRNVMDMRAVY-GGFAAALKD-LKV-WVMNVVPIES-PDTLPIIYERGLFGLYH----DWCESFNTY-P-RTYDLLHAD 139 (221)
Q Consensus 70 ~~r~VLD~GcG~-G~faa~L~~-~~v-~vmnv~~~d~-~~~l~~a~eRGl~~~~~----d~~e~f~~y-p-~sFDlVh~~ 139 (221)
...+||=-|||. |.++..+++ .|+ .+ +.++. ++..+.+.+.|.-.++. ++.+.+... + +.+|+|...
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v---~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~ 239 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHV---VITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEM 239 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEE---EEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEEC
Confidence 456777777653 445555554 355 33 22233 24566677776522221 111111112 2 567777642
Q ss_pred cccccccccHHHHHHHhhhhccCCeEEEEEc
Q 027609 140 HLFSTIKKSLKAVVAEVDRILRPDGNLILRD 170 (221)
Q Consensus 140 ~v~~h~~~d~~~vL~EmdRVLRPGG~~ii~d 170 (221)
. . -+..+.++-+.|+|+|.++.-.
T Consensus 240 ~-----g--~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 240 S-----G--APSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred C-----C--CHHHHHHHHHHHhcCCEEEEEe
Confidence 1 1 1457888899999999999874
No 374
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=20.66 E-value=6e+02 Score=24.61 Aligned_cols=97 Identities=15% Similarity=0.131 Sum_probs=50.9
Q ss_pred CCCeEEeecCcchHHHHHHhh---CCCeEEEeccCCCC-CCHHHHHH----cCccc-ee-ccccccCCC--C-C-CccCe
Q 027609 70 FVRNVMDMRAVYGGFAAALKD---LKVWVMNVVPIESP-DTLPIIYE----RGLFG-LY-HDWCESFNT--Y-P-RTYDL 135 (221)
Q Consensus 70 ~~r~VLD~GcG~G~faa~L~~---~~v~vmnv~~~d~~-~~l~~a~e----RGl~~-~~-~d~~e~f~~--y-p-~sFDl 135 (221)
....|.|+=||+|+|...... .+-....+.+.+.. +|.-++.. +|..+ .+ ..+...+.. + + ..||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 457899999999999865332 12112234555543 44443333 33322 11 111122332 2 2 45777
Q ss_pred eeeccccc--------------------c----ccccHHHHHHHhhhhccCCeEE
Q 027609 136 LHADHLFS--------------------T----IKKSLKAVVAEVDRILRPDGNL 166 (221)
Q Consensus 136 Vh~~~v~~--------------------h----~~~d~~~vL~EmdRVLRPGG~~ 166 (221)
|.++-=|. | ..+.--.++.-|..+|++||..
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~ 351 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTA 351 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeE
Confidence 66553221 1 1113446777789999999974
No 375
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=20.25 E-value=5.2e+02 Score=22.42 Aligned_cols=102 Identities=18% Similarity=0.194 Sum_probs=51.0
Q ss_pred eEEeecCcchH--HHHHHhhCCCeEEEeccCCCCCCHHHHHHcCccceec--c----c--cccCCCCCCccCeeeecccc
Q 027609 73 NVMDMRAVYGG--FAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYH--D----W--CESFNTYPRTYDLLHADHLF 142 (221)
Q Consensus 73 ~VLD~GcG~G~--faa~L~~~~v~vmnv~~~d~~~~l~~a~eRGl~~~~~--d----~--~e~f~~yp~sFDlVh~~~v~ 142 (221)
+|.=+|||.-| +|..|.+.|..| .+. +.++.++.+.+.|+.-... + . +.........+|+|... .
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V-~~~--~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vila--v 76 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDV-TFL--VRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILA--V 76 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCce-EEE--ecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEE--e
Confidence 46667888754 666777766432 222 2234555566666521100 0 0 00000012567877653 1
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEE-cChhhHHHHHHH
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDL 181 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~-d~~~~~~~i~~i 181 (221)
. -. ....++.++...+.++..++.- -.....+.+++.
T Consensus 77 k-~~-~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~ 114 (305)
T PRK12921 77 K-AY-QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPY 114 (305)
T ss_pred c-cc-CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHh
Confidence 1 11 4577888888888887655432 222234445544
No 376
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=20.18 E-value=1.4e+02 Score=27.15 Aligned_cols=75 Identities=24% Similarity=0.375 Sum_probs=44.8
Q ss_pred HHHHHhhCCCeEEEeccCCC---------C--CCHHHHHHcCccceeccccccCCCCCCccCeeeeccccccccccHHHH
Q 027609 84 FAAALKDLKVWVMNVVPIES---------P--DTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKSLKAV 152 (221)
Q Consensus 84 faa~L~~~~v~vmnv~~~d~---------~--~~l~~a~eRGl~~~~~d~~e~f~~yp~sFDlVh~~~v~~h~~~d~~~v 152 (221)
.+.+|++.|+.++.+.|+.. + +.+.-+.++|++.++|- .-.+.-.+.|-++ .-.++
T Consensus 86 V~~~l~~~Gv~av~~~P~s~~~~~gr~~~~~l~~i~~~l~~gfvPvl~G--DVv~d~~~g~~Ii-----------SGDdI 152 (252)
T COG1608 86 VVDALLDAGVRAVSVVPISFSTFNGRILYTYLEAIKDALEKGFVPVLYG--DVVPDDDNGYEII-----------SGDDI 152 (252)
T ss_pred HHHHHHhcCCccccccCcceeecCCceeechHHHHHHHHHcCCEeeeec--ceEEcCCCceEEE-----------eccHH
Confidence 45677777777766666554 1 23456778888776652 1111001233222 24567
Q ss_pred HHHhhhhccCCeEEEEEcC
Q 027609 153 VAEVDRILRPDGNLILRDD 171 (221)
Q Consensus 153 L~EmdRVLRPGG~~ii~d~ 171 (221)
...+.+.|+|.=.+..+|-
T Consensus 153 v~~LA~~l~pd~v~f~tdV 171 (252)
T COG1608 153 VLHLAKELKPDRVIFLTDV 171 (252)
T ss_pred HHHHHHHhCCCEEEEEecC
Confidence 7777888999988888864
No 377
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=20.17 E-value=1.9e+02 Score=24.24 Aligned_cols=89 Identities=18% Similarity=0.152 Sum_probs=46.8
Q ss_pred CCeEEeecC--cchHHHHHHhhC-CCeEEEeccCCCCCCHHHHHHcCccceecc----ccccCCCC-C-CccCeeeeccc
Q 027609 71 VRNVMDMRA--VYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYERGLFGLYHD----WCESFNTY-P-RTYDLLHADHL 141 (221)
Q Consensus 71 ~r~VLD~Gc--G~G~faa~L~~~-~v~vmnv~~~d~~~~l~~a~eRGl~~~~~d----~~e~f~~y-p-~sFDlVh~~~v 141 (221)
..+||=.|+ +.|..+..++.. |+.+..++ ..++..+.+.+.|.-.+++. ..+.+..+ + +.+|++...
T Consensus 137 g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~-- 212 (320)
T cd05286 137 GDTVLVHAAAGGVGLLLTQWAKALGATVIGTV--SSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYDG-- 212 (320)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCEEEEEc--CCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEEC--
Confidence 567887884 344444445443 66543222 12235566666664222221 11111111 2 568877642
Q ss_pred cccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 142 FSTIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 142 ~~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
.. ...+.+..+.|+++|.++.-
T Consensus 213 ---~~---~~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 213 ---VG---KDTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred ---CC---cHhHHHHHHhhccCcEEEEE
Confidence 12 24567778999999999854
No 378
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=20.12 E-value=2.2e+02 Score=26.23 Aligned_cols=93 Identities=12% Similarity=0.017 Sum_probs=53.1
Q ss_pred eEEeecCcc-hH-HHHHHhhC-CCeEEEeccCCCC-CCHHHHHHcCccceeccccccCCCCC-CccCeeeeccccccccc
Q 027609 73 NVMDMRAVY-GG-FAAALKDL-KVWVMNVVPIESP-DTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKK 147 (221)
Q Consensus 73 ~VLD~GcG~-G~-faa~L~~~-~v~vmnv~~~d~~-~~l~~a~eRGl~~~~~d~~e~f~~yp-~sFDlVh~~~v~~h~~~ 147 (221)
+|-=+|||. |. +...+.+. ++.+.-++.+|.. ..+..+.+.|..-.+.++-+-+.... ..+|+|+..
T Consensus 6 rVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~A-------- 77 (302)
T PRK08300 6 KVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDA-------- 77 (302)
T ss_pred eEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEEC--------
Confidence 466689887 44 24444433 4444445555543 35567777776533333322222111 457888765
Q ss_pred cHHHHHHHhhhhccCCeEEEEEcChh
Q 027609 148 SLKAVVAEVDRILRPDGNLILRDDAE 173 (221)
Q Consensus 148 d~~~vL~EmdRVLRPGG~~ii~d~~~ 173 (221)
.+..+-.|..+.+.+-|..++..+..
T Consensus 78 T~a~~H~e~a~~a~eaGk~VID~sPA 103 (302)
T PRK08300 78 TSAGAHVRHAAKLREAGIRAIDLTPA 103 (302)
T ss_pred CCHHHHHHHHHHHHHcCCeEEECCcc
Confidence 23456677778888888888886643
No 379
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=20.06 E-value=3.3e+02 Score=23.61 Aligned_cols=90 Identities=14% Similarity=0.202 Sum_probs=49.1
Q ss_pred CCeEEeecC--cchHHHHHHhh-C-CCeEEEeccCCCCCCHHHHHHcCccceec---cccccCCCCC-CccCeeeecccc
Q 027609 71 VRNVMDMRA--VYGGFAAALKD-L-KVWVMNVVPIESPDTLPIIYERGLFGLYH---DWCESFNTYP-RTYDLLHADHLF 142 (221)
Q Consensus 71 ~r~VLD~Gc--G~G~faa~L~~-~-~v~vmnv~~~d~~~~l~~a~eRGl~~~~~---d~~e~f~~yp-~sFDlVh~~~v~ 142 (221)
..+||=.|+ +.|.++..+++ . |+.+..++.. ++..+.+.+-|.-.++. ++.+.+.... +.+|+|.-. +
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~--~~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~vd~vl~~-~- 224 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR--PESQEWVLELGAHHVIDHSKPLKAQLEKLGLEAVSYVFSL-T- 224 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc--HHHHHHHHHcCCCEEEECCCCHHHHHHHhcCCCCCEEEEc-C-
Confidence 567777775 56666666666 3 6665333222 23556665555422221 1111111122 457766521 1
Q ss_pred ccccccHHHHHHHhhhhccCCeEEEEE
Q 027609 143 STIKKSLKAVVAEVDRILRPDGNLILR 169 (221)
Q Consensus 143 ~h~~~d~~~vL~EmdRVLRPGG~~ii~ 169 (221)
. -...+.+.-+.|+++|.++.-
T Consensus 225 ---~--~~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 225 ---H--TDQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred ---C--cHHHHHHHHHHhccCCEEEEE
Confidence 1 135678889999999999865
No 380
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=20.00 E-value=72 Score=31.23 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=16.6
Q ss_pred CCeEEeecCcchHHHHHHhh
Q 027609 71 VRNVMDMRAVYGGFAAALKD 90 (221)
Q Consensus 71 ~r~VLD~GcG~G~faa~L~~ 90 (221)
--.|+=+|||+|+|.|++..
T Consensus 39 d~DvvvIG~GpGGyvAAikA 58 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKA 58 (506)
T ss_pred cCCEEEECCCCchHHHHHHH
Confidence 34588899999999999854
Done!