BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027610
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6T6K9|XYLA_FERGO Xylose isomerase OS=Fervidobacterium gondwanense GN=xylA PE=3 SV=1
Length = 433
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 16/110 (14%)
Query: 67 EAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSH 126
E F H R+ A LR+S + D E I+ ++ + +L + A L FSH
Sbjct: 92 EYFTFHDRDLAHEGLTLRESNKILDKVVEKIKEYMKSSNVKLLWGTANL--------FSH 143
Query: 127 LKFELGQ--------LRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNM 168
++ G +A S+ + M D EL L L G E YDN+
Sbjct: 144 PRYAQGAATSPNPLVFSYAASQVKKMLDVTKELGGLGYVLWGGREGYDNL 193
>sp|Q91579|CEL3A_XENLA CUGBP Elav-like family member 3-A OS=Xenopus laevis GN=tnrc4-a PE=2
SV=2
Length = 462
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 13/152 (8%)
Query: 69 FEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQ-EFFSHL 127
F+ H +A AL SR LP + ++ F DTE E + R++ NQ FS +
Sbjct: 142 FQTHTEAQAAIN-ALHGSRTLPGASSSLVVKFADTEK---ERGLRRMQQVANQLGMFSPI 197
Query: 128 KFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187
+ G + TQ + D+L++ +A AL+ AY N A + + +
Sbjct: 198 ALQFGAYS---AYTQAVSDQLMQQQA---ALVAAHSAYLNPMATMAAVQMQQMATINPNG 251
Query: 188 VKATLLELVEQNKINRSLLTLLDENIANAQKS 219
+ AT + + N I S T + Q S
Sbjct: 252 IIAT--PITQINPITSSSGTSTPPTLTATQVS 281
>sp|Q8AVM5|VPP1_XENLA V-type proton ATPase 116 kDa subunit a isoform 1 OS=Xenopus laevis
GN=atp6v0a1 PE=2 SV=1
Length = 831
Score = 33.9 bits (76), Expect = 0.96, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 45 AQTGHIARLEFKRRLEKDAEA-REAFEQHVR--EEAERRRALRQSRV------LPDTAEE 95
++ G + +++F R L D + F VR EE +R+ + V + DT E
Sbjct: 27 SELGELGKVQF-RDLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEVKKANISILDTGEN 85
Query: 96 MIEYF----LDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIEL 151
F +D EA + EI NQE EL +L+F + KTQ D + +
Sbjct: 86 PEVPFPRDIIDLEANFEKIEIELKEINTNQEALKRNFLELTELKFILRKTQQFFDEMADP 145
Query: 152 EALQKA--LLEGTE 163
+ L+++ LLE +E
Sbjct: 146 DLLEESSTLLEPSE 159
>sp|Q2J7E7|MDH_FRASC Malate dehydrogenase OS=Frankia sp. (strain CcI3) GN=mdh PE=3 SV=1
Length = 329
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 38 PEGILGS-AQTGHIARLEFKRRLEKDAEAREAFEQHVREEAERRRALR 84
PEG++ S T R E + LE DA +RE + VRE AE R A+R
Sbjct: 277 PEGLISSFPVTASGGRFEIVQGLELDAFSREKIDASVRELAEEREAVR 324
>sp|P16952|SSP5_STRGN Agglutinin receptor OS=Streptococcus gordonii GN=ssp5 PE=1 SV=2
Length = 1500
Score = 32.3 bits (72), Expect = 3.0, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 20/132 (15%)
Query: 35 QWDPEGILGSAQTGHIARLEFKRRLEKDAEAREAFEQHVREEAERRRALRQSRVLPDTAE 94
Q D + L + QT E R + +AEA+EA+E+ V+E + AL+
Sbjct: 224 QQDYQNKLSAYQT------ELARVQKANAEAKEAYEKAVKENTAKNEALKVENEAIKQRN 277
Query: 95 EMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEAL 154
E + + ++ E ++A ++ + N++ + Q + A +T EL +
Sbjct: 278 ETAKATYEAAMKQYEADLAAIK-KANEDNDADY-----QAKLAAYQT--------ELARV 323
Query: 155 QKALLEGTEAYD 166
QKA E EAYD
Sbjct: 324 QKANAEAKEAYD 335
>sp|Q8EQR4|MIAB_OCEIH (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM
11309 / KCTC 3954 / HTE831) GN=miaB PE=3 SV=1
Length = 519
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 128 KFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187
K ++ ++RF S +D +DRLIE+ L +G D++ + + + K + K
Sbjct: 300 KIDIPRVRFTTSHPRDFDDRLIEV------LAQGGNLLDHIHLPVQSGSSEILKKMNRKY 353
Query: 188 VKATLLELVEQNKINRSLLTL 208
+ LELV + +I TL
Sbjct: 354 TREEYLELVRKIRIAMPNATL 374
>sp|Q0RE66|MDH_FRAAA Malate dehydrogenase OS=Frankia alni (strain ACN14a) GN=mdh PE=3
SV=1
Length = 329
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 38 PEGILGS-AQTGHIARLEFKRRLEKDAEAREAFEQHVREEAERRRALR 84
PEG++ S T + E + LE DA +RE + VRE AE R A+R
Sbjct: 277 PEGLISSFPVTAAGGKFEIVQGLELDAFSREKIDASVRELAEEREAVR 324
>sp|B1HR59|MIAB_LYSSC (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Lysinibacillus sphaericus (strain C3-41) GN=miaB PE=3
SV=1
Length = 514
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 128 KFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187
K ++ ++RF S +D +D LIE+ A + L+E ++ + + + KI+ K
Sbjct: 292 KIDIPRIRFTTSHPRDFDDHLIEVLAKRGNLVE------HIHLPVQSGSNDILKIMARKY 345
Query: 188 VKATLLELVEQNK 200
+ L LVE+ K
Sbjct: 346 TREHFLTLVEKIK 358
>sp|Q5L0E8|MIAB_GEOKA (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Geobacillus kaustophilus (strain HTA426) GN=miaB PE=3
SV=1
Length = 531
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 128 KFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187
K ++ ++RF S +D +DRLIE+ A + L+E ++ + + + K++ K
Sbjct: 304 KIDIARIRFTTSHPRDFDDRLIEVLAKRGNLVE------HIHLPVQSGSTEILKMMGRKY 357
Query: 188 VKATLLELVEQNK 200
+ LELV + K
Sbjct: 358 TREEYLELVRKIK 370
>sp|Q8JHV6|LAMB4_DANRE Laminin subunit beta-4 OS=Danio rerio GN=lamb4 PE=2 SV=1
Length = 1827
Score = 31.2 bits (69), Expect = 6.4, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 12/132 (9%)
Query: 71 QHVREEAERRRALRQSRVLPDTAEEMIEYFLDT--EAQELEFEIARLR-PRLNQEFFSHL 127
+ ++ + E RA Q + DTA+ + DT + +EL+ + +L+ NQ S
Sbjct: 1698 EALKNKTEMNRA--QGKEAKDTADAALNSANDTGKDLEELKEQFEKLKLNSTNQNVSSEA 1755
Query: 128 KFELGQLRF-AVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSK 186
L + A + + +ED++ E+E L++ +L E D M+ +L +K +
Sbjct: 1756 NERLKNITMEAENLAKHVEDKMKEIEDLEEKILLSNERKDEMRKELEALQKE------AD 1809
Query: 187 DVKATLLELVEQ 198
D+K +++ V++
Sbjct: 1810 DLKKFIVDKVQR 1821
>sp|A4IMH7|MIAB_GEOTN (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Geobacillus thermodenitrificans (strain NG80-2)
GN=miaB PE=3 SV=2
Length = 523
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 128 KFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187
K ++ ++RF S +D +DRLIE+ A + L+E ++ + + + K++ K
Sbjct: 304 KIDIARIRFTTSHPRDFDDRLIEVLAKRGNLVE------HIHLPVQSGSTEILKMMGRKY 357
Query: 188 VKATLLELVEQNK 200
+ LELV + K
Sbjct: 358 TREEYLELVRKIK 370
>sp|B7GJM6|MIAB_ANOFW (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1)
GN=miaB PE=3 SV=1
Length = 527
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 128 KFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187
K ++ ++RF S +D +DRLIE+ L +G +++ + + + K++ K
Sbjct: 308 KIDIPRIRFTTSHPRDFDDRLIEV------LAKGGNLVEHIHLPVQSGSSEVLKMMARKY 361
Query: 188 VKATLLELVEQNK 200
+ LELV + K
Sbjct: 362 TREQYLELVRKIK 374
>sp|A7GRA2|MIAB_BACCN (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98)
GN=miaB PE=3 SV=1
Length = 509
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 128 KFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187
K ++ ++RF S +D +D LIE+ L +G +++ + + + KI+ K
Sbjct: 290 KIDIARIRFTTSHPRDFDDHLIEV------LGKGGNLVEHIHLPVQSGSTDMLKIMARKY 343
Query: 188 VKATLLELVEQNKINRSLLTLL 209
+ LELV KI +++ ++
Sbjct: 344 TREQYLELVR--KIKKTIPNVV 363
>sp|Q96CN4|EVI5L_HUMAN EVI5-like protein OS=Homo sapiens GN=EVI5L PE=1 SV=1
Length = 794
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Query: 117 PRLNQEFFSHLKFELGQLRFAVSKT----QDMEDRLIELEALQKAL 158
PRL ++F SHL+ EL Q R ++T ++M+D+++++E +L
Sbjct: 450 PRLTEDFVSHLETELEQSRLRETETLGALREMQDKVLDMEKRNSSL 495
>sp|O31778|MIAB_BACSU (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus subtilis (strain 168) GN=miaB PE=1 SV=1
Length = 509
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 128 KFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187
K ++ ++RF S +D +DRLIE+ L +G D++ + + + K++ K
Sbjct: 290 KIDIPRIRFTTSHPRDFDDRLIEV------LAKGGNLLDHIHLPVQSGSSEVLKLMARKY 343
Query: 188 VKATLLELVEQNK---INRSLLT 207
+ +ELV + K N SL T
Sbjct: 344 DRERYMELVRKIKEAMPNASLTT 366
>sp|Q967U1|PSME_DICDI Proteasome activator 28 OS=Dictyostelium discoideum GN=psmE3 PE=1
SV=1
Length = 225
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 135 RFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKATLLE 194
F V +D+ ++ +LE + +LL+G+E+Y +A L+ KIL KD++A
Sbjct: 123 NFGVDVQEDIITQITKLEEVYTSLLDGSESYFASRASLV------KKILKHKDIEAYRYS 176
Query: 195 L--VEQNKINRSLLTLLD 210
L V++ + R + D
Sbjct: 177 LAQVDEKEFTRFSFSYFD 194
>sp|A8FDH0|MIAB_BACP2 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus pumilus (strain SAFR-032) GN=miaB PE=3 SV=1
Length = 508
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 128 KFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187
K ++ ++RF S +D +D LIE+ L +G D++ + + S+ K++ K
Sbjct: 289 KIDIPRIRFTTSHPRDFDDHLIEV------LAKGGNLLDHIHLPVQSGSSSVLKLMARKY 342
Query: 188 VKATLLELVEQNK---INRSLLT 207
+ L+LV + K N SL T
Sbjct: 343 DRERYLDLVRKIKEAMPNASLTT 365
>sp|A7Z4X2|MIAB_BACA2 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus amyloliquefaciens (strain FZB42) GN=miaB
PE=3 SV=1
Length = 509
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 128 KFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187
K ++ ++RF S +D +D LIE+ L +G D++ + + ++ K++ K
Sbjct: 290 KIDIPRIRFTTSHPRDFDDHLIEV------LAKGGNLLDHIHLPVQSGSSAMLKMMARKY 343
Query: 188 VKATLLELVEQNKI---NRSLLT 207
+ LELV + K N SL T
Sbjct: 344 DRERYLELVGKIKAAMPNASLTT 366
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,283,799
Number of Sequences: 539616
Number of extensions: 2455226
Number of successful extensions: 12721
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 274
Number of HSP's that attempted gapping in prelim test: 12412
Number of HSP's gapped (non-prelim): 565
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)