Query 027610
Match_columns 221
No_of_seqs 22 out of 24
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 12:31:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11123 DNA_Packaging_2: DNA 75.1 7.9 0.00017 30.4 5.0 46 117-169 27-72 (82)
2 PF08031 BBE: Berberine and be 70.5 1.8 4E-05 29.2 0.6 12 36-47 34-45 (47)
3 PF09726 Macoilin: Transmembra 70.3 18 0.0004 36.9 7.7 80 55-135 493-579 (697)
4 PHA00425 DNA packaging protein 64.3 30 0.00065 27.6 6.2 70 92-168 2-73 (88)
5 KOG4807 F-actin binding protei 61.7 1.1E+02 0.0025 30.7 11.0 81 36-116 315-406 (593)
6 PF04102 SlyX: SlyX; InterPro 52.9 65 0.0014 23.4 6.0 40 144-183 2-41 (69)
7 PF09862 DUF2089: Protein of u 49.5 18 0.00038 29.5 2.9 31 173-203 64-105 (113)
8 PRK09039 hypothetical protein; 47.5 1.5E+02 0.0032 27.6 8.8 25 96-120 39-63 (343)
9 PRK00846 hypothetical protein; 45.0 80 0.0017 24.2 5.7 42 140-181 7-48 (77)
10 PF03693 RHH_2: Uncharacterise 43.7 31 0.00068 25.9 3.3 46 118-163 8-59 (80)
11 TIGR00985 3a0801s04tom mitocho 41.8 95 0.0021 26.3 6.2 15 88-102 78-92 (148)
12 PRK02793 phi X174 lysis protei 40.3 1.2E+02 0.0026 22.4 5.9 31 143-173 5-35 (72)
13 PF11328 DUF3130: Protein of u 39.4 75 0.0016 25.4 4.9 38 147-184 39-76 (90)
14 PRK04406 hypothetical protein; 38.8 1.2E+02 0.0026 22.8 5.7 41 140-180 4-45 (75)
15 COG1390 NtpE Archaeal/vacuolar 37.9 1E+02 0.0023 26.6 6.0 39 142-190 67-105 (194)
16 PRK04325 hypothetical protein; 36.7 1.5E+02 0.0032 22.1 5.9 31 143-173 6-36 (74)
17 PRK02119 hypothetical protein; 36.4 1.5E+02 0.0033 22.0 5.9 38 143-180 6-43 (73)
18 COG3283 TyrR Transcriptional r 36.0 44 0.00095 33.4 3.8 39 87-129 373-411 (511)
19 TIGR02606 antidote_CC2985 puta 36.0 64 0.0014 23.5 3.8 20 118-137 5-24 (69)
20 PF05008 V-SNARE: Vesicle tran 32.7 1.8E+02 0.0039 20.6 6.3 46 123-173 4-49 (79)
21 PF01984 dsDNA_bind: Double-st 30.2 87 0.0019 24.9 4.0 38 174-211 45-92 (107)
22 PRK00736 hypothetical protein; 28.7 2.4E+02 0.0051 20.7 5.9 38 143-180 2-39 (68)
23 PRK14063 exodeoxyribonuclease 27.6 1.8E+02 0.0039 21.9 5.1 41 147-187 24-64 (76)
24 KOG3054 Uncharacterized conser 26.5 1.6E+02 0.0035 27.9 5.5 25 37-61 83-110 (299)
25 PF07067 DUF1340: Protein of u 26.2 2.2E+02 0.0048 26.1 6.2 52 86-137 63-129 (236)
26 PRK14066 exodeoxyribonuclease 25.7 2E+02 0.0044 21.6 5.1 39 149-187 25-63 (75)
27 PRK04239 hypothetical protein; 25.3 1.1E+02 0.0024 24.9 3.8 39 173-211 49-97 (110)
28 PRK00295 hypothetical protein; 25.0 2.8E+02 0.0061 20.3 5.8 37 144-180 3-39 (68)
29 PF08182 Pedibin: Pedibin/Hym- 24.4 68 0.0015 21.8 2.1 32 127-161 2-33 (35)
30 PF10136 SpecificRecomb: Site- 24.3 5.5E+02 0.012 26.5 9.3 109 105-214 165-300 (643)
31 COG1722 XseB Exonuclease VII s 23.6 2.1E+02 0.0046 21.9 4.9 37 151-187 33-69 (81)
32 PRK14069 exodeoxyribonuclease 23.3 2.2E+02 0.0047 22.7 5.1 40 149-188 29-68 (95)
33 KOG2580 Mitochondrial import i 23.2 1.4E+02 0.0031 29.8 4.8 56 99-162 295-352 (459)
34 PF10475 DUF2450: Protein of u 23.1 5.4E+02 0.012 22.9 10.3 98 99-196 7-118 (291)
35 PF13404 HTH_AsnC-type: AsnC-t 22.2 65 0.0014 21.4 1.6 14 199-212 2-15 (42)
36 KOG4403 Cell surface glycoprot 21.6 8.9E+02 0.019 24.9 11.1 51 129-182 309-373 (575)
37 PF14842 FliG_N: FliG N-termin 21.5 3.5E+02 0.0077 20.8 5.8 79 90-199 20-101 (108)
38 PRK00977 exodeoxyribonuclease 21.0 1.7E+02 0.0037 22.1 3.9 43 145-187 27-69 (80)
39 KOG3431 Apoptosis-related prot 20.9 1.9E+02 0.004 24.6 4.4 38 174-211 53-100 (129)
40 cd01401 PncB_like Nicotinate p 20.8 4.3E+02 0.0093 25.4 7.3 73 106-183 61-156 (377)
No 1
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=75.08 E-value=7.9 Score=30.42 Aligned_cols=46 Identities=28% Similarity=0.379 Sum_probs=38.2
Q ss_pred cCCCHHHHHHHHHHhhhhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027610 117 PRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQ 169 (221)
Q Consensus 117 PrLt~eFf~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l~egvEayDk~~ 169 (221)
-+=||-.|+.+.+-+...+|.++|-.-.+.-|++|.+ |.++|+++.
T Consensus 27 ekRsPQLYnAI~k~L~RHkF~iskl~pd~~~LG~L~~-------aL~ey~~~~ 72 (82)
T PF11123_consen 27 EKRSPQLYNAIGKLLDRHKFQISKLQPDENILGELAA-------ALEEYKKMV 72 (82)
T ss_pred hhcChHHHHHHHHHHHHccchhhhcCccHHHHHHHHH-------HHHHHHHHc
Confidence 3447899999999999999999999888888888865 577787764
No 2
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=70.48 E-value=1.8 Score=29.23 Aligned_cols=12 Identities=25% Similarity=0.703 Sum_probs=7.4
Q ss_pred cCCCCcCCCCcc
Q 027610 36 WDPEGILGSAQT 47 (221)
Q Consensus 36 wDPEgl~g~pqt 47 (221)
|||+|+|..||+
T Consensus 34 yDP~n~F~~~q~ 45 (47)
T PF08031_consen 34 YDPDNVFRFPQS 45 (47)
T ss_dssp H-TT-TS-STTS
T ss_pred hCccceeCCCCC
Confidence 999999987764
No 3
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=70.29 E-value=18 Score=36.88 Aligned_cols=80 Identities=28% Similarity=0.419 Sum_probs=49.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCC-----CHHHHHHHhhccchhhhHHHHHhhccCC--CHHHHHHH
Q 027610 55 FKRRLEKDAEAREAFEQHVREEAERRRALRQSRVLPD-----TAEEMIEYFLDTEAQELEFEIARLRPRL--NQEFFSHL 127 (221)
Q Consensus 55 f~r~le~d~e~~ea~erq~~~e~e~r~~~ReaRv~Pd-----t~~~LIEyfLdTea~EmE~EIaRcRPrL--t~eFf~~L 127 (221)
.-|||..+..+|..+|+|..+|+.+++++.+..-.|- +-.+-=| -+-.-.++||-||.++|--| .+|=-..|
T Consensus 493 LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e-~~r~r~~~lE~E~~~lr~elk~kee~~~~~ 571 (697)
T PF09726_consen 493 LEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAE-SCRQRRRQLESELKKLRRELKQKEEQIREL 571 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888889999999999999988876655444441 1111122 23455688999988877433 34444444
Q ss_pred HHHhhhhh
Q 027610 128 KFELGQLR 135 (221)
Q Consensus 128 ~~ei~~~r 135 (221)
..++..+|
T Consensus 572 e~~~~~lr 579 (697)
T PF09726_consen 572 ESELQELR 579 (697)
T ss_pred HHHHHHHH
Confidence 44444443
No 4
>PHA00425 DNA packaging protein, small subunit
Probab=64.29 E-value=30 Score=27.55 Aligned_cols=70 Identities=23% Similarity=0.318 Sum_probs=49.2
Q ss_pred CHHHHHHH--hhccchhhhHHHHHhhccCCCHHHHHHHHHHhhhhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027610 92 TAEEMIEY--FLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNM 168 (221)
Q Consensus 92 t~~~LIEy--fLdTea~EmE~EIaRcRPrLt~eFf~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l~egvEayDk~ 168 (221)
+...|+.| +||||+-.-=..=-|---+=||-.|+.+-.-+...+|-++|-+-.|.-|++|.+ |.+.|++.
T Consensus 2 ~d~~L~k~LemlDTE~a~~mL~DL~ddekRtPQLYnAIgKlL~RHkF~isKl~pD~~iLg~la~-------~l~ey~~~ 73 (88)
T PHA00425 2 NDKSLIKFLEMLDTEMAQRMLADLKDDEKRTPQLYNAIGKLLDRHKFQISKLQPDENILGGLAA-------ALEEYKEK 73 (88)
T ss_pred chhhHHHHHHHHhHHHHHHHHHHhcCccccChHHHHHHHHHHHHhcccccccCCcHHHHHHHHH-------HHHHHHHh
Confidence 34556665 367765332222223334568999999999999999999999999999998876 46667664
No 5
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=61.74 E-value=1.1e+02 Score=30.74 Aligned_cols=81 Identities=23% Similarity=0.329 Sum_probs=61.5
Q ss_pred cCCCCcCCCCccchhh---------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHH--HHHHhhccc
Q 027610 36 WDPEGILGSAQTGHIA---------RLEFKRRLEKDAEAREAFEQHVREEAERRRALRQSRVLPDTAEE--MIEYFLDTE 104 (221)
Q Consensus 36 wDPEgl~g~pqtGhIa---------Rr~f~r~le~d~e~~ea~erq~~~e~e~r~~~ReaRv~Pdt~~~--LIEyfLdTe 104 (221)
-||+|-+..-..|||- .|-|.-+=++-...-|.++|||+.|-++.+...+.=.--+|.+- -||-|-+.-
T Consensus 315 e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAh 394 (593)
T KOG4807|consen 315 EAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAH 394 (593)
T ss_pred cCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Confidence 5788877655556653 46677777777777888999999988888777776555566553 588899999
Q ss_pred hhhhHHHHHhhc
Q 027610 105 AQELEFEIARLR 116 (221)
Q Consensus 105 a~EmE~EIaRcR 116 (221)
-+|||.|+...+
T Consensus 395 rEEmeRELeKsq 406 (593)
T KOG4807|consen 395 REEMERELEKSQ 406 (593)
T ss_pred HHHHHHHHHhhh
Confidence 999999998866
No 6
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=52.86 E-value=65 Score=23.39 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027610 144 MEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKIL 183 (221)
Q Consensus 144 ~Edrl~ELEAL~k~l~egvEayDk~~~~lv~akerl~KiL 183 (221)
+|+|+.+||..-.+....++.-++...+--.--.+|.+.+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l 41 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQL 41 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999888876665444444444433
No 7
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=49.48 E-value=18 Score=29.51 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhc-----------cchhHHHHHHHHHhchhhH
Q 027610 173 ITARKSLTKILT-----------SKDVKATLLELVEQNKINR 203 (221)
Q Consensus 173 v~akerl~KiLt-----------sKDkKatlLEMve~nEid~ 203 (221)
=+.|.||-+|+. .++.+.-||+|+++|||+.
T Consensus 64 PTvR~rLd~ii~~lg~~~~~~~~~~~~~~~IL~~L~~GeIs~ 105 (113)
T PF09862_consen 64 PTVRNRLDKIIEKLGYEEDEEEEEEDERKEILDKLEKGEISV 105 (113)
T ss_pred HHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHHHcCCCCH
Confidence 346667766665 4577889999999999975
No 8
>PRK09039 hypothetical protein; Validated
Probab=47.53 E-value=1.5e+02 Score=27.59 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=19.3
Q ss_pred HHHHhhccchhhhHHHHHhhccCCC
Q 027610 96 MIEYFLDTEAQELEFEIARLRPRLN 120 (221)
Q Consensus 96 LIEyfLdTea~EmE~EIaRcRPrLt 120 (221)
++.|||+-++...+-|+.+..-.++
T Consensus 39 ~~q~fLs~~i~~~~~eL~~L~~qIa 63 (343)
T PRK09039 39 VAQFFLSREISGKDSALDRLNSQIA 63 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4689999999988888888654443
No 9
>PRK00846 hypothetical protein; Provisional
Probab=45.00 E-value=80 Score=24.23 Aligned_cols=42 Identities=21% Similarity=0.195 Sum_probs=30.4
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027610 140 KTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTK 181 (221)
Q Consensus 140 rt~~~Edrl~ELEAL~k~l~egvEayDk~~~~lv~akerl~K 181 (221)
++..+++|+.+||.---....-+|..++...+.-..-.+|+.
T Consensus 7 ~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ 48 (77)
T PRK00846 7 RDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAE 48 (77)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999988888888888777766654444444443
No 10
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=43.69 E-value=31 Score=25.94 Aligned_cols=46 Identities=33% Similarity=0.463 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHhhhhhhh----hccCc--hhhHHHHHHHHHHHHHHHHHH
Q 027610 118 RLNQEFFSHLKFELGQLRFA----VSKTQ--DMEDRLIELEALQKALLEGTE 163 (221)
Q Consensus 118 rLt~eFf~~L~~ei~~~rfa----~~rt~--~~Edrl~ELEAL~k~l~egvE 163 (221)
-|||++-++++..+.+=+|+ |-+.. .++++-.++++|+..+.+|.+
T Consensus 8 sL~~~~~~~i~~~V~sG~Y~s~SEvvR~aLRlle~~e~~~~~Lr~~l~~g~~ 59 (80)
T PF03693_consen 8 SLTPELEAFIEEQVASGRYSSASEVVREALRLLEEREAKLEALREALQEGLE 59 (80)
T ss_dssp ---HHHHHHHHHHHCTTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 48899999999999887776 22221 234455566777777777764
No 11
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=41.78 E-value=95 Score=26.34 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=11.6
Q ss_pred CCCCCHHHHHHHhhc
Q 027610 88 VLPDTAEEMIEYFLD 102 (221)
Q Consensus 88 v~Pdt~~~LIEyfLd 102 (221)
..|.|++++=.||++
T Consensus 78 p~p~d~~e~E~~Fl~ 92 (148)
T TIGR00985 78 PDPTDPSEKEAFFLQ 92 (148)
T ss_pred CCCCCHHHHHHHHHH
Confidence 346799998888875
No 12
>PRK02793 phi X174 lysis protein; Provisional
Probab=40.29 E-value=1.2e+02 Score=22.41 Aligned_cols=31 Identities=23% Similarity=0.096 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027610 143 DMEDRLIELEALQKALLEGTEAYDNMQADLI 173 (221)
Q Consensus 143 ~~Edrl~ELEAL~k~l~egvEayDk~~~~lv 173 (221)
.+|+|+.+||..-.....-++.-++...+.-
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq 35 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHE 35 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999988888888887777655443
No 13
>PF11328 DUF3130: Protein of unknown function (DUF3130; InterPro: IPR021477 This bacterial family of proteins has no known function.
Probab=39.35 E-value=75 Score=25.42 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027610 147 RLIELEALQKALLEGTEAYDNMQADLITARKSLTKILT 184 (221)
Q Consensus 147 rl~ELEAL~k~l~egvEayDk~~~~lv~akerl~KiLt 184 (221)
|--.+.-|+++|.+.++.+|..|.=+-+...||+|+=.
T Consensus 39 raNsin~~r~Al~dLv~~Ve~fq~v~~~DA~RlkkmG~ 76 (90)
T PF11328_consen 39 RANSINQLRTALIDLVDVVENFQQVVKKDASRLKKMGK 76 (90)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33467889999999999999999999999999998743
No 14
>PRK04406 hypothetical protein; Provisional
Probab=38.78 E-value=1.2e+02 Score=22.76 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=28.9
Q ss_pred cCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027610 140 KTQ-DMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLT 180 (221)
Q Consensus 140 rt~-~~Edrl~ELEAL~k~l~egvEayDk~~~~lv~akerl~ 180 (221)
||. .+|+|+.+||..-.....-++.-++...+--+--.+|.
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~ 45 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQ 45 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 38999999999988888888887776654443333333
No 15
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=37.93 E-value=1e+02 Score=26.65 Aligned_cols=39 Identities=26% Similarity=0.223 Sum_probs=28.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Q 027610 142 QDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKA 190 (221)
Q Consensus 142 ~~~Edrl~ELEAL~k~l~egvEayDk~~~~lv~akerl~KiLtsKDkKa 190 (221)
...+.|..-|++.+.++...+++ ..++|..+.+.++...
T Consensus 67 A~le~r~~~Le~~ee~l~~~~~~----------~~e~L~~i~~~~~~~~ 105 (194)
T COG1390 67 ALLEARRKLLEAKEEILESVFEA----------VEEKLRNIASDPEYES 105 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHcCcCCcchHH
Confidence 56788999999999999886665 3566666666666655
No 16
>PRK04325 hypothetical protein; Provisional
Probab=36.71 E-value=1.5e+02 Score=22.08 Aligned_cols=31 Identities=26% Similarity=0.234 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027610 143 DMEDRLIELEALQKALLEGTEAYDNMQADLI 173 (221)
Q Consensus 143 ~~Edrl~ELEAL~k~l~egvEayDk~~~~lv 173 (221)
.+++|+.+||..-.....-||.-++...+--
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq 36 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQ 36 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999998888888887777655443
No 17
>PRK02119 hypothetical protein; Provisional
Probab=36.45 E-value=1.5e+02 Score=21.97 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027610 143 DMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLT 180 (221)
Q Consensus 143 ~~Edrl~ELEAL~k~l~egvEayDk~~~~lv~akerl~ 180 (221)
.+|+|+.+||.--.....-++.-++...+--+--.+|.
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~ 43 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQ 43 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999888888888877776554433333333
No 18
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=36.00 E-value=44 Score=33.37 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=33.9
Q ss_pred cCCCCCHHHHHHHhhccchhhhHHHHHhhccCCCHHHHHHHHH
Q 027610 87 RVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKF 129 (221)
Q Consensus 87 Rv~Pdt~~~LIEyfLdTea~EmE~EIaRcRPrLt~eFf~~L~~ 129 (221)
|.-|+|-.-|.|+|+ +.+--|+..-+|+|+++|..+|+.
T Consensus 373 Rer~~di~pL~e~Fv----~q~s~elg~p~pkl~~~~~~~L~~ 411 (511)
T COG3283 373 RERPQDIMPLAELFV----QQFSDELGVPRPKLAADLLTVLTR 411 (511)
T ss_pred ccCcccchHHHHHHH----HHHHHHhCCCCCccCHHHHHHHHH
Confidence 334688999999997 577889999999999999999987
No 19
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=35.97 E-value=64 Score=23.53 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHhhhhhhh
Q 027610 118 RLNQEFFSHLKFELGQLRFA 137 (221)
Q Consensus 118 rLt~eFf~~L~~ei~~~rfa 137 (221)
-|+|.+-++++..+.+-||+
T Consensus 5 sL~~~~~~~i~~~V~sG~Y~ 24 (69)
T TIGR02606 5 SLGEHLESFIRSQVQSGRYG 24 (69)
T ss_pred ecCHHHHHHHHHHHHCCCCC
Confidence 47899999999999888887
No 20
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=32.71 E-value=1.8e+02 Score=20.59 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=34.4
Q ss_pred HHHHHHHHhhhhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027610 123 FFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLI 173 (221)
Q Consensus 123 Ff~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l~egvEayDk~~~~lv 173 (221)
.++.|++.|+++. .. ..++|..-+...++.|.++-+..++|-..+-
T Consensus 4 l~~~i~~~l~~~~----~~-~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~ 49 (79)
T PF05008_consen 4 LTAEIKSKLERIK----NL-SGEQRKSLIREIERDLDEAEELLKQMELEVR 49 (79)
T ss_dssp HHHHHHHHHHHGG----GS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh----cc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666664 22 2389999999999999999999999877543
No 21
>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota. The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.
Probab=30.19 E-value=87 Score=24.92 Aligned_cols=38 Identities=26% Similarity=0.452 Sum_probs=28.7
Q ss_pred HHHHHHHHHhccchhH-----HHHHHHHHhchhh-----HHHHHHHHH
Q 027610 174 TARKSLTKILTSKDVK-----ATLLELVEQNKIN-----RSLLTLLDE 211 (221)
Q Consensus 174 ~akerl~KiLtsKDkK-----atlLEMve~nEid-----~sLlaLLde 211 (221)
.|++||..|--+|--| ..|+.|+.+|.|. ..|..||++
T Consensus 45 eAreRL~rI~lvkPe~A~~VE~~Liqlaq~G~l~~kI~d~~L~~iL~~ 92 (107)
T PF01984_consen 45 EARERLNRIKLVKPEKARQVENQLIQLAQSGQLRGKIDDEQLKEILEQ 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSS-B-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 4889999988766544 4688899999885 467777764
No 22
>PRK00736 hypothetical protein; Provisional
Probab=28.68 E-value=2.4e+02 Score=20.66 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027610 143 DMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLT 180 (221)
Q Consensus 143 ~~Edrl~ELEAL~k~l~egvEayDk~~~~lv~akerl~ 180 (221)
.+++|+.+||.--......+|.-++....--+.-.+|+
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~ 39 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMR 39 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999998888888888877766554433333333
No 23
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.60 E-value=1.8e+02 Score=21.89 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 027610 147 RLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187 (221)
Q Consensus 147 rl~ELEAL~k~l~egvEayDk~~~~lv~akerl~KiLtsKD 187 (221)
--.-||..-+.-.+|++.+...+..|-.|..++.+|+...+
T Consensus 24 ~~l~Leesl~lyeeG~~L~k~C~~~L~~aE~ki~~l~~~~~ 64 (76)
T PRK14063 24 GDVPLEEAISYFKEGMELSKLCDEKLKNVQEQMAVILGEDG 64 (76)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33457778888899999999999999999999999886543
No 24
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.50 E-value=1.6e+02 Score=27.87 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=17.6
Q ss_pred CCCCcCC---CCccchhhHHHHHHHhhh
Q 027610 37 DPEGILG---SAQTGHIARLEFKRRLEK 61 (221)
Q Consensus 37 DPEgl~g---~pqtGhIaRr~f~r~le~ 61 (221)
|-..+.| .|+.||+.-++=+|+..+
T Consensus 83 e~~~~dg~ee~~e~~~~~~kigkkK~aK 110 (299)
T KOG3054|consen 83 EEGSGDGDEEEPEAGGLQAKIGKKKEAK 110 (299)
T ss_pred cccccccccccccccchhhhhhhHHHHH
Confidence 3344555 699999998887776654
No 25
>PF07067 DUF1340: Protein of unknown function (DUF1340); InterPro: IPR009774 This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 235 residues in length. The function of this family is unknown.
Probab=26.16 E-value=2.2e+02 Score=26.10 Aligned_cols=52 Identities=35% Similarity=0.558 Sum_probs=44.1
Q ss_pred ccCCCCCHHHHHHHhhccchhhhHHHH--------HhhccC-------CCHHHHHHHHHHhhhhhhh
Q 027610 86 SRVLPDTAEEMIEYFLDTEAQELEFEI--------ARLRPR-------LNQEFFSHLKFELGQLRFA 137 (221)
Q Consensus 86 aRv~Pdt~~~LIEyfLdTea~EmE~EI--------aRcRPr-------Lt~eFf~~L~~ei~~~rfa 137 (221)
++.-|.|.+++-||+-|.=+++++-=+ .-|||- |+.+.|.+...||..+|-+
T Consensus 63 sklSp~Tl~dmreyitdgL~NDlq~yL~~~y~~~~~~~rpd~dk~NAGL~eeLfkq~~~Ei~~Lra~ 129 (236)
T PF07067_consen 63 SKLSPATLDDMREYITDGLANDLQEYLSKHYTSRSVKCRPDTDKTNAGLPEELFKQYREEIEELRAA 129 (236)
T ss_pred hhCChhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccCCCcccccCCCCHHHHHHHHHHHHHHHHh
Confidence 677899999999999999999997543 358885 7899999999999999843
No 26
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.70 E-value=2e+02 Score=21.64 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 027610 149 IELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187 (221)
Q Consensus 149 ~ELEAL~k~l~egvEayDk~~~~lv~akerl~KiLtsKD 187 (221)
.-||-.-+...+|++.+-..+..|-.|..++..|+..+|
T Consensus 25 l~Leesl~lyeeG~~L~k~C~~~L~~ae~kv~~l~~~~~ 63 (75)
T PRK14066 25 LSLDDSLKAFEEGVKHAAFCSKKLDEAERRVEVLLKQKD 63 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 356777788889999999999999999999999987554
No 27
>PRK04239 hypothetical protein; Provisional
Probab=25.27 E-value=1.1e+02 Score=24.94 Aligned_cols=39 Identities=28% Similarity=0.422 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhccchhHH-----HHHHHHHhchh-----hHHHHHHHHH
Q 027610 173 ITARKSLTKILTSKDVKA-----TLLELVEQNKI-----NRSLLTLLDE 211 (221)
Q Consensus 173 v~akerl~KiLtsKDkKa-----tlLEMve~nEi-----d~sLlaLLde 211 (221)
-.|++||..|--+|--|| .|+.|+-+|.| |..|..||+.
T Consensus 49 ~eAreRL~rI~lvkPe~A~~VE~~liqlAq~G~i~~ki~e~~L~~lL~~ 97 (110)
T PRK04239 49 PEARERLNRIKLVKPEFAEQVEQQLIQLAQSGRIQGPIDDEQLKEILEQ 97 (110)
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 358999999988776655 57778888887 5667777764
No 28
>PRK00295 hypothetical protein; Provisional
Probab=25.00 E-value=2.8e+02 Score=20.28 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027610 144 MEDRLIELEALQKALLEGTEAYDNMQADLITARKSLT 180 (221)
Q Consensus 144 ~Edrl~ELEAL~k~l~egvEayDk~~~~lv~akerl~ 180 (221)
+|+|+.+||.--.....-++.-++....--+--.+|.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~ 39 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQ 39 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999998888888888877776554433333333
No 29
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=24.43 E-value=68 Score=21.85 Aligned_cols=32 Identities=34% Similarity=0.240 Sum_probs=24.0
Q ss_pred HHHHhhhhhhhhccCchhhHHHHHHHHHHHHHHHH
Q 027610 127 LKFELGQLRFAVSKTQDMEDRLIELEALQKALLEG 161 (221)
Q Consensus 127 L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l~eg 161 (221)
|+.||.++. ..-.++||+--+||-=.|.|++.
T Consensus 2 L~~EI~~Lq---~~~a~Gedv~~~LE~Kek~L~n~ 33 (35)
T PF08182_consen 2 LCAEIDVLQ---IQLADGEDVCKELEQKEKELSNF 33 (35)
T ss_pred HHHHHHHHH---HHHhcchhHHHHHHHHHHHHHhc
Confidence 667777665 33457799999999999988753
No 30
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=24.27 E-value=5.5e+02 Score=26.53 Aligned_cols=109 Identities=25% Similarity=0.265 Sum_probs=70.7
Q ss_pred hhhhHHHHHhhccCCCH--HHHHHHHHHhhhhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q 027610 105 AQELEFEIARLRPRLNQ--EFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQA------------ 170 (221)
Q Consensus 105 a~EmE~EIaRcRPrLt~--eFf~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l~egvEayDk~~~------------ 170 (221)
+..||-|+.|+=|.+.. +=|-.|+.|+....-+........+.. ...-|+..+....+++|+...
T Consensus 165 a~glepel~r~~p~~~~~~sPF~al~~e~~~~~~~~~~~~~~~~~~-d~~~l~vll~qCr~~v~~v~~~~~~~G~Sv~l~ 243 (643)
T PF10136_consen 165 AEGLEPELRRRMPELEERDSPFVALQREVEAFLEAYRQQDEDPDSE-DLKHLRVLLDQCREQVDRVRKHLEKYGVSVSLV 243 (643)
T ss_pred hcccCHHHHhhCCCCcccCCCHHHHHHHHHHHHHHHhhcccccccc-cHHHHHHHHHHHHHHHHHHHHhccccCeeHHHH
Confidence 46788899999998643 335567778877766655554332221 355566666666667776333
Q ss_pred ----HHHHHHHHHHHHhc-----cchhH----HHHHHHHHhchhhHHHHHHHHHhHH
Q 027610 171 ----DLITARKSLTKILT-----SKDVK----ATLLELVEQNKINRSLLTLLDENIA 214 (221)
Q Consensus 171 ----~lv~akerl~KiLt-----sKDkK----atlLEMve~nEid~sLlaLLdeNia 214 (221)
.|-+--+||..||. +++.. .-+.++|..+-=.+|+-.|..+|..
T Consensus 244 ~~L~Rl~Q~L~Ri~~Ll~~l~~~~~~~~~~~~~L~~~Lv~~~~~r~sir~L~~~n~~ 300 (643)
T PF10136_consen 244 FLLERLRQQLDRIELLLDLLVDDSPDRRRAIVRLFKELVRAECRRNSIRALWRSNTS 300 (643)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 55556666666654 33333 3356788888889999999999975
No 31
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=23.58 E-value=2.1e+02 Score=21.91 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 027610 151 LEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187 (221)
Q Consensus 151 LEAL~k~l~egvEayDk~~~~lv~akerl~KiLtsKD 187 (221)
||.=-+..+.|+..|-..+..|-+|+.||-+|+...+
T Consensus 33 Le~sl~~~erG~~L~k~c~~~L~~Ae~~v~~l~~~~~ 69 (81)
T COG1722 33 LEEALKEFERGMALYKECQEKLQQAEQRVEKLLEEDE 69 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5556677789999999999999999999999987443
No 32
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.35 E-value=2.2e+02 Score=22.70 Aligned_cols=40 Identities=20% Similarity=0.111 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 027610 149 IELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDV 188 (221)
Q Consensus 149 ~ELEAL~k~l~egvEayDk~~~~lv~akerl~KiLtsKDk 188 (221)
.-||..-+...+|++.+-..+..|-.|+.++..|+..+|-
T Consensus 29 l~LEesl~lyeeGv~L~k~C~~~L~~AE~kV~~L~~~~~~ 68 (95)
T PRK14069 29 FSLEESLKAYERGMELKKICSGILDDAEGKIEALTKDESG 68 (95)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4577777888899999999999999999999999876553
No 33
>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.16 E-value=1.4e+02 Score=29.79 Aligned_cols=56 Identities=27% Similarity=0.325 Sum_probs=44.5
Q ss_pred HhhccchhhhHHHHHhhccCCC-HHHHHHHHHHhhh-hhhhhccCchhhHHHHHHHHHHHHHHHHH
Q 027610 99 YFLDTEAQELEFEIARLRPRLN-QEFFSHLKFELGQ-LRFAVSKTQDMEDRLIELEALQKALLEGT 162 (221)
Q Consensus 99 yfLdTea~EmE~EIaRcRPrLt-~eFf~~L~~ei~~-~rfa~~rt~~~Edrl~ELEAL~k~l~egv 162 (221)
.|-.||+-+-=-||.+.-|-++ ++|..++..-|-- +=.|..++ .||.|.||.+|+.
T Consensus 295 ~fsktE~Sev~tei~~iDPsF~~~~Flr~~ee~IiPnVLeAyvkG--------D~evLK~wcsea~ 352 (459)
T KOG2580|consen 295 LFSKTEMSEVLTEIKKIDPSFDKEDFLRECEEYIIPNVLEAYVKG--------DLEVLKKWCSEAP 352 (459)
T ss_pred cchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhHHHHHHHHhc--------cHHHHHHHHhhhH
Confidence 4668999999999999999885 7899999988733 33344444 5999999999875
No 34
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=23.13 E-value=5.4e+02 Score=22.89 Aligned_cols=98 Identities=23% Similarity=0.350 Sum_probs=53.3
Q ss_pred HhhccchhhhHHHHHhhccC-CCHHHHHHHHHHhhhhhhhh---------ccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027610 99 YFLDTEAQELEFEIARLRPR-LNQEFFSHLKFELGQLRFAV---------SKTQDMEDRLIELEALQKALLEGTEAYDNM 168 (221)
Q Consensus 99 yfLdTea~EmE~EIaRcRPr-Lt~eFf~~L~~ei~~~rfa~---------~rt~~~Edrl~ELEAL~k~l~egvEayDk~ 168 (221)
.||+.+..-+.||+...=+- ++.+.+..+...+..--=.| .+....-.-+..+..|++-+.+++.-...+
T Consensus 7 ~yF~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~ 86 (291)
T PF10475_consen 7 IYFDEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNL 86 (291)
T ss_pred hhcCCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666677777666666 66666665554443322111 122223334555666677666666666666
Q ss_pred HHHHHHHHHHHHH----HhccchhHHHHHHHH
Q 027610 169 QADLITARKSLTK----ILTSKDVKATLLELV 196 (221)
Q Consensus 169 ~~~lv~akerl~K----iLtsKDkKatlLEMv 196 (221)
-..|-.+++.+++ |+..+.+|..+.++.
T Consensus 87 R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll 118 (291)
T PF10475_consen 87 RRNLKSADENLTKSGLEILRLQRKRQNLKKLL 118 (291)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666544 444555555444443
No 35
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=22.20 E-value=65 Score=21.42 Aligned_cols=14 Identities=36% Similarity=0.821 Sum_probs=11.4
Q ss_pred chhhHHHHHHHHHh
Q 027610 199 NKINRSLLTLLDEN 212 (221)
Q Consensus 199 nEid~sLlaLLdeN 212 (221)
.++|+.||.+|++|
T Consensus 2 D~~D~~Il~~Lq~d 15 (42)
T PF13404_consen 2 DELDRKILRLLQED 15 (42)
T ss_dssp -HHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHc
Confidence 47899999999998
No 36
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=21.63 E-value=8.9e+02 Score=24.89 Aligned_cols=51 Identities=37% Similarity=0.362 Sum_probs=33.5
Q ss_pred HHhhhhhhhhccCchhhHHHHHH------HHHHHHHHHHHH----HHHH----HHHHHHHHHHHHHHH
Q 027610 129 FELGQLRFAVSKTQDMEDRLIEL------EALQKALLEGTE----AYDN----MQADLITARKSLTKI 182 (221)
Q Consensus 129 ~ei~~~rfa~~rt~~~Edrl~EL------EAL~k~l~egvE----ayDk----~~~~lv~akerl~Ki 182 (221)
.||.++|-+..+- |.+|.-- .||||||+--.| +|.+ +-..|..|+|---||
T Consensus 309 kelE~lR~~L~kA---Ekele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~ekl 373 (575)
T KOG4403|consen 309 KELEQLRVALEKA---EKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKL 373 (575)
T ss_pred HHHHHHHHHHHHH---HHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5899999888775 4433222 589999998776 5554 334666676655444
No 37
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=21.51 E-value=3.5e+02 Score=20.79 Aligned_cols=79 Identities=18% Similarity=0.268 Sum_probs=41.0
Q ss_pred CCCHHHHHHHhhccchhhhHHHHHhhccCCCHHHHHHHHHHhhhhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027610 90 PDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQ 169 (221)
Q Consensus 90 Pdt~~~LIEyfLdTea~EmE~EIaRcRPrLt~eFf~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l~egvEayDk~~ 169 (221)
++....++.||=+-|.+.|=.+|++++. +--+.+..|+.|+...+....
T Consensus 20 ee~Aa~vlk~l~~~ei~~i~~~ma~l~~-------------------------------v~~~~~~~Vl~EF~~~~~~~~ 68 (108)
T PF14842_consen 20 EEAAAEVLKHLDEEEIERISREMAKLGS-------------------------------VSPEEVEEVLEEFYDEIRAQG 68 (108)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHT------------------------------------HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHccCC-------------------------------CCHHHHHHHHHHHHHHHHHcc
Confidence 4556677778777777777777766421 123456778888877666666
Q ss_pred HHHHHHHHHHHHHhc---cchhHHHHHHHHHhc
Q 027610 170 ADLITARKSLTKILT---SKDVKATLLELVEQN 199 (221)
Q Consensus 170 ~~lv~akerl~KiLt---sKDkKatlLEMve~n 199 (221)
.-..+..+.+.++|+ .+|+=..||+-+..+
T Consensus 69 ~~~~gg~~~~~~lL~~alg~~~a~~il~~~~~~ 101 (108)
T PF14842_consen 69 GIVSGGRDFARRLLEKALGEEKAKEILDRLEQS 101 (108)
T ss_dssp ---S-HHHHHHH-HHHHS---HHHHH-------
T ss_pred ccccChHHHHHHHHHHHCCHHHHHHHHHHHhcc
Confidence 667777777777776 666666777655543
No 38
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.95 E-value=1.7e+02 Score=22.07 Aligned_cols=43 Identities=23% Similarity=0.243 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 027610 145 EDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187 (221)
Q Consensus 145 Edrl~ELEAL~k~l~egvEayDk~~~~lv~akerl~KiLtsKD 187 (221)
|+--.-|+.+-+...+|++.+...+..|-.|..++..|+...+
T Consensus 27 E~~~l~Lees~~lyeeg~~L~k~C~~~L~~ae~ki~~l~~~~~ 69 (80)
T PRK00977 27 ESGDLPLEESLAAFERGVALARQCQKKLQQAEQRVEKLLDEDG 69 (80)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4444567888888899999999999999999999999987555
No 39
>KOG3431 consensus Apoptosis-related protein/predicted DNA-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.90 E-value=1.9e+02 Score=24.60 Aligned_cols=38 Identities=24% Similarity=0.494 Sum_probs=30.2
Q ss_pred HHHHHHHHHhccchhHH-----HHHHHHHhchh-----hHHHHHHHHH
Q 027610 174 TARKSLTKILTSKDVKA-----TLLELVEQNKI-----NRSLLTLLDE 211 (221)
Q Consensus 174 ~akerl~KiLtsKDkKa-----tlLEMve~nEi-----d~sLlaLLde 211 (221)
+|++||..|.-+|--|| .|+-|+..|.| +.-|+.||..
T Consensus 53 qAr~RLsrlAlvkpekAq~VE~~lirma~~gQvs~Kise~~lisiLe~ 100 (129)
T KOG3431|consen 53 QARERLSRLALVKPEKAQAVENYLIRMAQTGQVSHKISEAELISILEK 100 (129)
T ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCCccccccHHHHHHHHHH
Confidence 58999999998887776 56779999887 5667888753
No 40
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=20.77 E-value=4.3e+02 Score=25.35 Aligned_cols=73 Identities=18% Similarity=0.268 Sum_probs=44.6
Q ss_pred hhhHHHHHhhccCCCHHHHHHHHHHhhhhhhh-----hcc-----Cc--hhhHHHHHHHHHHHHHHHHHHH---------
Q 027610 106 QELEFEIARLRPRLNQEFFSHLKFELGQLRFA-----VSK-----TQ--DMEDRLIELEALQKALLEGTEA--------- 164 (221)
Q Consensus 106 ~EmE~EIaRcRPrLt~eFf~~L~~ei~~~rfa-----~~r-----t~--~~Edrl~ELEAL~k~l~egvEa--------- 164 (221)
+|++| +++..|.+.|+|+++|.. .||- |.+ .+ ..+--+.+-.-+++.+..-+-.
T Consensus 61 ~el~y-L~~~~~~~~~~fl~~L~~----frf~~e~~~v~~~~~~~~~~i~i~Gp~~~~~L~Et~lL~iise~~~~~~~~~ 135 (377)
T cd01401 61 EELAY-LRRSLPFLKPDYLDYLEL----FRLNPEEVVVRLDTGKGQLDIRISGPWKDTILYEVPLLAIVSEVYFRFRDAD 135 (377)
T ss_pred HHHHH-HHhccCCCCHHHHHHHhc----CCCCcCeeEEecCCCCCeEEEEEEEeHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34444 233568999999999986 2442 111 00 2233456666677777777764
Q ss_pred --HHHHHHHHHHHHHHHHHHh
Q 027610 165 --YDNMQADLITARKSLTKIL 183 (221)
Q Consensus 165 --yDk~~~~lv~akerl~KiL 183 (221)
||..+..+.+-..|+.++.
T Consensus 136 ~~~~~~~~~~atKa~r~~~~a 156 (377)
T cd01401 136 WDYEEQLEKLEEKLERLLEEA 156 (377)
T ss_pred cchHHHHHHHHHHHHHHHHHh
Confidence 6666666666667777765
Done!