Query 027610
Match_columns 221
No_of_seqs 22 out of 24
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 21:19:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027610.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027610hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l3l_A Tubulin-specific chaper 73.4 7.6 0.00026 29.9 5.9 64 81-167 17-86 (111)
2 3kxe_C Antitoxin protein PARD- 44.1 26 0.00089 25.8 4.0 46 118-163 9-60 (88)
3 2fh0_A Hypothetical 16.0 kDa p 42.6 31 0.0011 25.7 4.2 38 174-211 18-65 (81)
4 1eij_A Hypothetical protein MT 40.3 35 0.0012 25.3 4.2 38 174-211 20-67 (80)
5 2jxn_A Uncharacterized protein 36.4 40 0.0014 26.7 4.2 38 174-211 53-100 (127)
6 3efg_A Protein SLYX homolog; x 35.5 1.2E+02 0.004 21.9 6.3 42 140-181 8-49 (78)
7 3hot_A Transposable element ma 32.2 77 0.0026 25.9 5.5 58 117-186 278-340 (345)
8 3anw_B GINS23, putative unchar 31.5 79 0.0027 26.2 5.4 54 118-184 76-134 (171)
9 2ygw_A Malonyl-COA decarboxyla 29.8 93 0.0032 29.6 6.2 94 106-211 35-158 (460)
10 2cru_A Programmed cell death p 29.4 62 0.0021 25.4 4.2 39 173-211 49-97 (118)
11 1cee_B Wiskott-aldrich syndrom 28.0 21 0.00072 24.5 1.2 13 30-42 17-29 (59)
12 2qme_I CRIB domain of the seri 27.6 24 0.00084 22.0 1.3 13 30-42 10-23 (36)
13 2b5u_A Colicin E3; high resolu 27.6 1.9E+02 0.0064 28.3 7.9 46 34-79 271-320 (551)
14 2hvu_A PDCD5-like protein; YMR 26.4 71 0.0024 25.1 4.1 38 174-211 53-100 (116)
15 3onj_A T-snare VTI1; helix, HA 24.7 1.8E+02 0.006 21.3 5.8 47 122-173 12-58 (97)
16 4i0x_B ESAT-6-like protein MAB 22.8 2E+02 0.007 20.2 6.3 42 143-184 29-77 (103)
17 2odb_B Serine/threonine-protei 22.2 27 0.00091 21.7 0.7 16 30-45 10-27 (35)
18 2pjw_H Uncharacterized protein 22.2 68 0.0023 24.0 3.1 53 100-170 32-84 (88)
19 1vcs_A Vesicle transport throu 21.4 1.9E+02 0.0064 21.3 5.4 44 123-171 17-60 (102)
20 2f7t_A MOS1 transposase; RNAse 20.7 1.7E+02 0.0058 22.9 5.3 60 115-186 158-222 (227)
21 3dct_B Nuclear receptor coacti 20.7 40 0.0014 19.8 1.2 16 93-108 5-20 (21)
No 1
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=73.41 E-value=7.6 Score=29.88 Aligned_cols=64 Identities=25% Similarity=0.337 Sum_probs=43.9
Q ss_pred HHhhhccCCCCCHHHHHHHhhcc---chhhhHHHHHhhccCCCHHHHHHHHHHhhhhhhhhccCchhhHHHHHHHHHHHH
Q 027610 81 RALRQSRVLPDTAEEMIEYFLDT---EAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKA 157 (221)
Q Consensus 81 ~~~ReaRv~Pdt~~~LIEyfLdT---ea~EmE~EIaRcRPrLt~eFf~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~ 157 (221)
...++.+....++.+=++||+.+ +...||-.|..|. .+...++-+.++..|+++
T Consensus 17 ~~r~~~~~~~~~~~E~~~~F~~~F~~~~~~Ie~~l~~~~-----------------------~~~~ld~i~~~I~~Lqk~ 73 (111)
T 2l3l_A 17 ERRKQKRQNQEVEKENSHFFVATFARERAAVEELLERAE-----------------------SVERLEEAASRLQGLQKL 73 (111)
T ss_dssp HHHTTSSCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHCC-----------------------SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhcCc-----------------------hhhHHHHHHHHHHHHHHH
Confidence 33455555566667889999875 4556777777764 222345566678889999
Q ss_pred HHHHHH---HHHH
Q 027610 158 LLEGTE---AYDN 167 (221)
Q Consensus 158 l~egvE---ayDk 167 (221)
+.++.- .||.
T Consensus 74 v~das~fLp~YD~ 86 (111)
T 2l3l_A 74 INDSVFFLAAYDL 86 (111)
T ss_dssp HHHSTTTSCHHHH
T ss_pred HHHHhhhccHHHH
Confidence 998877 7887
No 2
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=44.10 E-value=26 Score=25.84 Aligned_cols=46 Identities=28% Similarity=0.448 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHhhhhhhh----hccCc--hhhHHHHHHHHHHHHHHHHHH
Q 027610 118 RLNQEFFSHLKFELGQLRFA----VSKTQ--DMEDRLIELEALQKALLEGTE 163 (221)
Q Consensus 118 rLt~eFf~~L~~ei~~~rfa----~~rt~--~~Edrl~ELEAL~k~l~egvE 163 (221)
-|+|++-++++..+.+-+|+ |-++. ..+++-.++++|+..+.+|.+
T Consensus 9 sL~~~l~~~i~~~V~sG~Y~s~SEviR~~lR~l~~re~~l~~Lr~~l~~G~~ 60 (88)
T 3kxe_C 9 VLGDHFQAFIDSQVADGRYGSASEVIRAGLRLLEENEAKLAALRAALIEGEE 60 (88)
T ss_dssp CCCHHHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 58999999999998887776 22221 233444457788888888775
No 3
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=42.55 E-value=31 Score=25.66 Aligned_cols=38 Identities=18% Similarity=0.391 Sum_probs=29.5
Q ss_pred HHHHHHHHHhccchhHH-----HHHHHHHhchh-----hHHHHHHHHH
Q 027610 174 TARKSLTKILTSKDVKA-----TLLELVEQNKI-----NRSLLTLLDE 211 (221)
Q Consensus 174 ~akerl~KiLtsKDkKa-----tlLEMve~nEi-----d~sLlaLLde 211 (221)
.|++||..|--+|--|| .|+.|+.+|.| |..|..||++
T Consensus 18 eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~e~~L~~lL~~ 65 (81)
T 2fh0_A 18 QALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVSILNG 65 (81)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCSCCBCHHHHHHHHHH
T ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 58999999887665554 67789999988 5678888875
No 4
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=40.35 E-value=35 Score=25.25 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=30.1
Q ss_pred HHHHHHHHHhccchhHH-----HHHHHHHhchh-----hHHHHHHHHH
Q 027610 174 TARKSLTKILTSKDVKA-----TLLELVEQNKI-----NRSLLTLLDE 211 (221)
Q Consensus 174 ~akerl~KiLtsKDkKa-----tlLEMve~nEi-----d~sLlaLLde 211 (221)
.|++||..|--+|--|| .|+.|+-+|.| |..|..||++
T Consensus 20 eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~e~~L~~lL~~ 67 (80)
T 1eij_A 20 EARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQLKELLKR 67 (80)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHCCSSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 58999999988766555 57779999988 5678888875
No 5
>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}
Probab=36.36 E-value=40 Score=26.73 Aligned_cols=38 Identities=18% Similarity=0.425 Sum_probs=29.2
Q ss_pred HHHHHHHHHhc-----cchhHHHHHHHHHhchh-----hHHHHHHHHH
Q 027610 174 TARKSLTKILT-----SKDVKATLLELVEQNKI-----NRSLLTLLDE 211 (221)
Q Consensus 174 ~akerl~KiLt-----sKDkKatlLEMve~nEi-----d~sLlaLLde 211 (221)
.|++||..|-- ++.+...|+.|+.+|.| |..|..||+.
T Consensus 53 eAreRL~rI~lVkPekA~~VE~~Li~lAq~Gql~~kVsE~~Lk~iL~~ 100 (127)
T 2jxn_A 53 QALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVSILNG 100 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSCBCHHHHHHHHHH
T ss_pred HHHHHHhcccccCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 47888888876 45566678889999988 5678888864
No 6
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=35.47 E-value=1.2e+02 Score=21.91 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=29.5
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027610 140 KTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTK 181 (221)
Q Consensus 140 rt~~~Edrl~ELEAL~k~l~egvEayDk~~~~lv~akerl~K 181 (221)
++..+|+|+.+||.--......++.-++..++--.--.+|.+
T Consensus 8 ~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ 49 (78)
T 3efg_A 8 RDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAE 49 (78)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355889999999998888888888777765544443344433
No 7
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=32.17 E-value=77 Score=25.90 Aligned_cols=58 Identities=24% Similarity=0.310 Sum_probs=36.3
Q ss_pred cCCCH---HHHHHHHHHhhhhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccc
Q 027610 117 PRLNQ---EFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDN--MQADLITARKSLTKILTSK 186 (221)
Q Consensus 117 PrLt~---eFf~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l~egvEayDk--~~~~lv~akerl~KiLtsK 186 (221)
|-||| -||.+|+..+....|. -++.|.+++.++++.++. ...-+-+-..|+.+.+.++
T Consensus 278 pdlnpie~~~~~~lk~~~~~~~~~------------~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~r~~~~i~~~ 340 (345)
T 3hot_A 278 PDLAPSDYHLFASMGHALAEQRFD------------SYESVKKWLDEWFAAKDDEFYWRGIHKLPERWEKCVASD 340 (345)
T ss_dssp GGGCHHHHTHHHHHHHHHTTCCCS------------SHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcccccchhhHHHHHHhccccCC------------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 56666 4899999987443331 256778888888876644 3333344456677666543
No 8
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=31.50 E-value=79 Score=26.17 Aligned_cols=54 Identities=22% Similarity=0.228 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHhhhhhhhhccCch-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027610 118 RLNQEFFSHLKFELGQLRFAVSKTQD-----MEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILT 184 (221)
Q Consensus 118 rLt~eFf~~L~~ei~~~rfa~~rt~~-----~Edrl~ELEAL~k~l~egvEayDk~~~~lv~akerl~KiLt 184 (221)
.|.++||.-...-|-.+.-.+.+... .+..+.||+.+.+.+.+-. ..|+.||++
T Consensus 76 ~LP~dFY~rvr~yI~~Le~ei~~~~~~d~~~~~~kl~elk~~~~~l~~L~-------------~~Ri~KIv~ 134 (171)
T 3anw_B 76 LLPEGLYERAEFYAYYLENYVRLNPRESVDTINVKLTKLANLRKKLRDLK-------------LIRFNKILK 134 (171)
T ss_dssp CCCTTHHHHHHHHHHHHHHHTTCCC-------CCHHHHHHHHHHHHHHHH-------------HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH
Confidence 47788988888888877766655541 2344556666666554433 568888876
No 9
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo sapiens}
Probab=29.82 E-value=93 Score=29.60 Aligned_cols=94 Identities=19% Similarity=0.244 Sum_probs=60.9
Q ss_pred hhhHHHHHhhccCCCHH-----HHHHHHHHhhhhhhhhccCchhhHHHHHHHHHHHHHH----H-----HHHHHHHHHHH
Q 027610 106 QELEFEIARLRPRLNQE-----FFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALL----E-----GTEAYDNMQAD 171 (221)
Q Consensus 106 ~EmE~EIaRcRPrLt~e-----Ff~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l~----e-----gvEayDk~~~~ 171 (221)
+.+=-+|...=-.|+++ ||..|.. .|.+.+. ++ -+|+++|.. . ...+|+.+...
T Consensus 35 e~~a~~i~~~Y~~l~~~~~r~~fl~~La~-----~f~~d~~-----~v--~~a~~~y~~~~~~~~~~~~~~~~~~~L~~a 102 (460)
T 2ygw_A 35 EGQCADFVSFYGGLAETAQRAELLGRLAR-----GFGVDHG-----QV--AEQSAGVLHLRQQQREAAVLLQAEDRLRYA 102 (460)
T ss_dssp -CHHHHHHHHHHTCCSHHHHHHHHHHHHH-----HSSCCHH-----HH--HHHHHHHHHHTC--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHH-----HhCCCHH-----HH--HHHHHHHHhcccCCcchhHHHHHHHHHHHh
Confidence 33444555555556666 9999988 4555443 22 244555554 1 12488888889
Q ss_pred HHHHHHHHHHHhcc--------chhHHHHHHHHHhc--------hhhHHHHHHHHH
Q 027610 172 LITARKSLTKILTS--------KDVKATLLELVEQN--------KINRSLLTLLDE 211 (221)
Q Consensus 172 lv~akerl~KiLts--------KDkKatlLEMve~n--------Eid~sLlaLLde 211 (221)
+..++.+|-+-+.. =|.|+.||++..++ .||..|-.||..
T Consensus 103 leP~r~~L~~rln~~pgG~~fLV~mRaDLL~~l~~~~~~~~~L~~Ld~dl~~Llss 158 (460)
T 2ygw_A 103 LVPRYRGLFHHISKLDGGVRFLVQLRADLLEAQALKLVEGPDVREMNGVLKGMLSE 158 (460)
T ss_dssp TSCTTHHHHHHHHTSTTHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHH
Confidence 99999888777762 37899999998777 566666666654
No 10
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=29.44 E-value=62 Score=25.40 Aligned_cols=39 Identities=21% Similarity=0.395 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhccchhH-----HHHHHHHHhchh-----hHHHHHHHHH
Q 027610 173 ITARKSLTKILTSKDVK-----ATLLELVEQNKI-----NRSLLTLLDE 211 (221)
Q Consensus 173 v~akerl~KiLtsKDkK-----atlLEMve~nEi-----d~sLlaLLde 211 (221)
-.|++||..|--+|--| ..|+.|+-+|.| |..|..||+.
T Consensus 49 peAreRL~rI~lVKPEkA~~VE~~LI~lAq~Gqi~~kItee~Lk~lL~~ 97 (118)
T 2cru_A 49 QSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKK 97 (118)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCCSCBCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 35899999988766555 467789999988 5678888876
No 11
>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}
Probab=28.02 E-value=21 Score=24.49 Aligned_cols=13 Identities=38% Similarity=0.848 Sum_probs=10.3
Q ss_pred eeeeeccCCCCcC
Q 027610 30 RISCVQWDPEGIL 42 (221)
Q Consensus 30 ~i~~i~wDPEgl~ 42 (221)
.|+-|||||+.=|
T Consensus 17 Hv~HvG~d~~~gf 29 (59)
T 1cee_B 17 HVSHVGWDPQNGF 29 (59)
T ss_dssp EEEEECCCTTTCC
T ss_pred CcceeccCCCCCc
Confidence 7889999996435
No 12
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}
Probab=27.61 E-value=24 Score=22.03 Aligned_cols=13 Identities=23% Similarity=0.307 Sum_probs=9.9
Q ss_pred eeeeeccCCC-CcC
Q 027610 30 RISCVQWDPE-GIL 42 (221)
Q Consensus 30 ~i~~i~wDPE-gl~ 42 (221)
.++-|||||. |-|
T Consensus 10 H~~Hvg~d~~tG~~ 23 (36)
T 2qme_I 10 HTIHVGFDAVTGEF 23 (36)
T ss_dssp EEEEECCBTTTTBC
T ss_pred CeeEcccCCCCCcc
Confidence 6888999995 633
No 13
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=27.57 E-value=1.9e+02 Score=28.29 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=27.7
Q ss_pred eccCCC--CcCC--CCccchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 027610 34 VQWDPE--GILG--SAQTGHIARLEFKRRLEKDAEAREAFEQHVREEAER 79 (221)
Q Consensus 34 i~wDPE--gl~g--~pqtGhIaRr~f~r~le~d~e~~ea~erq~~~e~e~ 79 (221)
|-|=|| |+-+ ...+-.+.=-++++|.|.++-.+.++...|-+|.-+
T Consensus 271 II~FPe~Sg~ePlYISvs~ilt~~elkqrqeee~r~~qew~~~hp~~~Ae 320 (551)
T 2b5u_A 271 VIRFPKDSGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEWDATHPVEAAE 320 (551)
T ss_dssp EEECCGGGCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred EEECCCCCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHhhhcCcHHHHH
Confidence 446676 4444 356666777777888777776666655544444333
No 14
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function; NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Probab=26.38 E-value=71 Score=25.08 Aligned_cols=38 Identities=18% Similarity=0.391 Sum_probs=27.7
Q ss_pred HHHHHHHHHhccchhHH-----HHHHHHHhchh-----hHHHHHHHHH
Q 027610 174 TARKSLTKILTSKDVKA-----TLLELVEQNKI-----NRSLLTLLDE 211 (221)
Q Consensus 174 ~akerl~KiLtsKDkKa-----tlLEMve~nEi-----d~sLlaLLde 211 (221)
.|++||..|--+|--|| .|+.|+-+|.| |..|..||+.
T Consensus 53 eAreRL~rI~lvkPe~A~~VE~~li~laq~Gql~~ki~e~~L~~lL~~ 100 (116)
T 2hvu_A 53 QALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVSILNG 100 (116)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCBCHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 47899998887665555 56669999977 3557777764
No 15
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=24.67 E-value=1.8e+02 Score=21.26 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhhhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027610 122 EFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLI 173 (221)
Q Consensus 122 eFf~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l~egvEayDk~~~~lv 173 (221)
.+++.|+..|+++. ...+|.|..-+...+..+.|+-|..++|--..-
T Consensus 12 ~~~~~i~~~l~~~~-----~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~ 58 (97)
T 3onj_A 12 TTLEQAKASLAEAP-----SQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVN 58 (97)
T ss_dssp HHHHHHHHHHHHGG-----GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777663 445689999999999999999999999876543
No 16
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=22.83 E-value=2e+02 Score=20.22 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027610 143 DMEDRLIELEALQK-------ALLEGTEAYDNMQADLITARKSLTKILT 184 (221)
Q Consensus 143 ~~Edrl~ELEAL~k-------~l~egvEayDk~~~~lv~akerl~KiLt 184 (221)
.+++.|.+|+..-. |..++-++|+..+.+.-++-..|..+|.
T Consensus 29 ~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~ 77 (103)
T 4i0x_B 29 FVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLS 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555544433 3555677999999988888888887775
No 17
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Probab=22.21 E-value=27 Score=21.68 Aligned_cols=16 Identities=25% Similarity=0.571 Sum_probs=11.7
Q ss_pred eeeeeccCCC-C-cCCCC
Q 027610 30 RISCVQWDPE-G-ILGSA 45 (221)
Q Consensus 30 ~i~~i~wDPE-g-l~g~p 45 (221)
.++-|+|||. | +-|-|
T Consensus 10 H~~Hvg~d~~tG~f~Glp 27 (35)
T 2odb_B 10 HRVHTSFDPKEGKFVGLP 27 (35)
T ss_dssp EEEEEEEETTTTEEESCC
T ss_pred CeeeeeECCCCCcccCCC
Confidence 6888999997 6 33633
No 18
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=22.19 E-value=68 Score=23.99 Aligned_cols=53 Identities=19% Similarity=0.399 Sum_probs=40.1
Q ss_pred hhccchhhhHHHHHhhccCCCHHHHHHHHHHhhhhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027610 100 FLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQA 170 (221)
Q Consensus 100 fLdTea~EmE~EIaRcRPrLt~eFf~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l~egvEayDk~~~ 170 (221)
.=|.|.+++=-.|.-.||.|+. -||.- + .+..||-.|...+..++-.||.|.-
T Consensus 32 ~~d~eiq~LY~~v~~lRPkL~~--------li~ky--s--------qKk~eL~~Ln~kl~~a~~~Yd~lle 84 (88)
T 2pjw_H 32 LQDPHIGDMYGSVTPLRPQVTR--------MLGKY--A--------KEKEDMLSLRQVLANAERSYNQLMD 84 (88)
T ss_dssp HSCHHHHHHHHHHTTHHHHHHH--------HHHHH--H--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhhhhHHHHH--------HHHHH--H--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477888998899999997663 44322 1 3445799999999999999999864
No 19
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=21.44 E-value=1.9e+02 Score=21.28 Aligned_cols=44 Identities=11% Similarity=0.237 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027610 123 FFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQAD 171 (221)
Q Consensus 123 Ff~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l~egvEayDk~~~~ 171 (221)
.++.|+..|+++. ...+|+|...+...+..+.|+-|..++|--.
T Consensus 17 l~~~i~~kl~~i~-----~~~geerk~~i~~ie~~l~EA~ell~qMelE 60 (102)
T 1vcs_A 17 LTAEITSKIARVP-----RLPPDEKKQMVANVEKQLEEARELLEQMDLE 60 (102)
T ss_dssp HHHHHHHHHHHGG-----GSCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777653 2345888889999999999999999997654
No 20
>2f7t_A MOS1 transposase; RNAse-H like fold, DDD motif, DNA binding protein; 2.25A {Drosophila mauritiana}
Probab=20.73 E-value=1.7e+02 Score=22.93 Aligned_cols=60 Identities=23% Similarity=0.310 Sum_probs=33.5
Q ss_pred hccCCCH---HHHHHHHHHhhhhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccc
Q 027610 115 LRPRLNQ---EFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDN--MQADLITARKSLTKILTSK 186 (221)
Q Consensus 115 cRPrLt~---eFf~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l~egvEayDk--~~~~lv~akerl~KiLtsK 186 (221)
+-|-||| -+|++|+..+....| .+ ++.|.+++.++...++. ..+-.-+-..|+.+.+.++
T Consensus 158 ysPdlnpie~~~w~~lk~~l~~~~~---~~---------~~~l~~~i~~~~~~~~~~~~~~~~~~~~~r~~~vi~~~ 222 (227)
T 2f7t_A 158 YSPDLAPSDYHLFASMGHALAEQRF---DS---------YESVKKWLDEWFAAKDDEFYWRGIHKLPERWEKCVASD 222 (227)
T ss_dssp TCGGGCHHHHTHHHHHHHHHHTCCB---CS---------HHHHHHHHHHHHHHSCHHHHHHHHHTHHHHHHHHHHTT
T ss_pred CCCCcCcccchhhHHHHHHHhcCCC---CC---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 3466776 468999987743322 12 45566666666665543 2223334456666666543
No 21
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=20.72 E-value=40 Score=19.80 Aligned_cols=16 Identities=25% Similarity=0.777 Sum_probs=12.5
Q ss_pred HHHHHHHhhccchhhh
Q 027610 93 AEEMIEYFLDTEAQEL 108 (221)
Q Consensus 93 ~~~LIEyfLdTea~Em 108 (221)
+.+|+.|+||+.-.++
T Consensus 5 dhqllrylldkdek~l 20 (21)
T 3dct_B 5 DHQLLRYLLDKDEKDL 20 (26)
T ss_pred HHHHHHHHHccchhhc
Confidence 4579999999986554
Done!