BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027611
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2
SV=1
Length = 221
Score = 343 bits (880), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 163/221 (73%), Positives = 193/221 (87%)
Query: 1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
MSQ FE YERQYCE+SA LS+KCT+A ALDGE KKQ LSEIK+G+++A+AL++KMDLEAR
Sbjct: 1 MSQGFERYERQYCEISANLSKKCTSAIALDGEQKKQNLSEIKSGVEEAEALVKKMDLEAR 60
Query: 61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
+L PNVK+ LL KLREYK+DLNN K EVKR+TSGN+N ARDELLE+GMAD + SADQR
Sbjct: 61 NLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMADTLTASADQR 120
Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
RL+MST+ L +TDRIK+SRRT+LETEELGVSILQDLH QRQSLL AH TLHGVDDN+
Sbjct: 121 SRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHETLHGVDDNVG 180
Query: 181 KSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR 221
KSKKILT M+RRM+R+KW +G+II+VLV AI+ ILYFKLTR
Sbjct: 181 KSKKILTTMTRRMNRNKWTIGAIITVLVLAIIFILYFKLTR 221
>sp|Q9SEL5|VTI12_ARATH Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1
SV=3
Length = 222
Score = 320 bits (819), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 155/221 (70%), Positives = 187/221 (84%), Gaps = 1/221 (0%)
Query: 1 MSQVFEGYERQYCELSAGLSRKCTAASAL-DGELKKQKLSEIKTGLDDADALIRKMDLEA 59
MS VFEGYERQYCELS LSRKC +AS L +GE KK K++EIK+G+D+AD LIRKMDLEA
Sbjct: 1 MSDVFEGYERQYCELSTNLSRKCHSASVLSNGEEKKGKIAEIKSGIDEADVLIRKMDLEA 60
Query: 60 RSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQ 119
RSLQP+ KA+ LSKLREYK+DLN LK E KRV+S + ++R+EL+ESGMAD VSADQ
Sbjct: 61 RSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQ 120
Query: 120 RGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNI 179
RGRL MS ERL+ S+DRI+ESRR MLETEE+G+SI+QDL QQRQ+LLHAHN LHGVDD I
Sbjct: 121 RGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKLHGVDDAI 180
Query: 180 SKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLT 220
KSKK+LTAMSRRM+R+KWI+ S+I LV AI+LI+ +KL+
Sbjct: 181 DKSKKVLTAMSRRMTRNKWIITSVIVALVLAIILIISYKLS 221
>sp|Q9SEL6|VTI11_ARATH Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1
SV=2
Length = 221
Score = 317 bits (812), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 160/221 (72%), Positives = 192/221 (86%)
Query: 1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
MS VF+GYERQYCELSA LS+KC++A +LDGE KKQKLSEIK+GL++A+ LIRKMDLEAR
Sbjct: 1 MSDVFDGYERQYCELSASLSKKCSSAISLDGEQKKQKLSEIKSGLENAEVLIRKMDLEAR 60
Query: 61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
+L PN+K+ LL KLRE+K+DLNN K EVKR+TSG +N AARDELLE+GMAD SADQR
Sbjct: 61 TLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR 120
Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
RL+MSTERL +TDR+K+SRRTM+ETEE+GVSILQDLH QRQSLL AH TLHGVDDNI
Sbjct: 121 ARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETLHGVDDNIG 180
Query: 181 KSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR 221
KSKKILT M+RRM+++KW +G+II L+ AI +ILYFKLT+
Sbjct: 181 KSKKILTDMTRRMNKNKWTIGAIIIALIAAIFIILYFKLTK 221
>sp|O89116|VTI1A_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Mus musculus GN=Vti1a PE=1 SV=1
Length = 217
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
MS FEGYE+ + L+A ++ K L + KKQ ++ ++ L++A L+ +MDLE R
Sbjct: 1 MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 60
Query: 61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
+ P + M +++R YK ++ L+ + KR ++ R+ELL DA S +QR
Sbjct: 61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEV-RNELL----GDAGNSSENQR 115
Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
LL +TERL S+ R++ + +ETE++G +L++L R+ + A + L D N+
Sbjct: 116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARDRLRDADANLG 175
Query: 181 KSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYF 217
KS +ILT M RR+ +++ ++ + ++V AIL + F
Sbjct: 176 KSSRILTGMLRRIIQNRILLVILGIIVVIAILTAIAF 212
>sp|Q96AJ9|VTI1A_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Homo sapiens GN=VTI1A PE=1 SV=2
Length = 217
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 124/221 (56%), Gaps = 5/221 (2%)
Query: 1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
MS FEGYE+ + L+A ++ K L + KKQ ++ ++ L++A L+ +MDLE R
Sbjct: 1 MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVR 60
Query: 61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQR 120
+ P + M +++R YK ++ L+ + KR ++ R+ELL D S +QR
Sbjct: 61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEV-RNELL----GDDGNSSENQR 115
Query: 121 GRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180
LL +TERL S+ R++ + +ETE++G +L++L R+ + A L D N+
Sbjct: 116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDANLG 175
Query: 181 KSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR 221
KS +ILT M RR+ +++ ++ + ++V IL+ + F + R
Sbjct: 176 KSSRILTGMLRRIIQNRILLVILGIIVVITILMAITFSVRR 216
>sp|Q9JI51|VTI1A_RAT Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Rattus norvegicus GN=Vti1a PE=1 SV=1
Length = 224
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 127/220 (57%), Gaps = 4/220 (1%)
Query: 1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEAR 60
MS FEGYE+ + L+A ++ K + L + KKQ ++ ++ L++A L+ +MDLE R
Sbjct: 1 MSADFEGYEQDFAVLTAEITSKISRVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 60
Query: 61 SLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELL-ESGMA--DAMMVSA 117
+ P + M +++R YK ++ L+ + KR ++ R+ELL ++G + + ++
Sbjct: 61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDE-VRNELLGDAGNSSENQLIKLR 119
Query: 118 DQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDD 177
++R LL +TERL S+ R++ + +ETE++G +L++L R+ + A L D
Sbjct: 120 EERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDA 179
Query: 178 NISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYF 217
N+ KS +ILT M RR+ +++ ++ + ++V IL + F
Sbjct: 180 NLGKSSRILTGMLRRIIQNRILLVILGIIVVITILTAITF 219
>sp|P58200|VTI1B_RAT Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Rattus norvegicus GN=Vti1b PE=1 SV=2
Length = 232
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 106/197 (53%), Gaps = 12/197 (6%)
Query: 32 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91
E KK+ + + +A+ + +M+ E R + ++SKLR Y+ DL L EV R
Sbjct: 39 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNSMMSKLRNYRKDLAKLHREV-RS 97
Query: 92 TSGNVNQAARDEL------LESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTML 145
T R +L LE+ + + QR LL TE LN +T I+ S R
Sbjct: 98 TPLTATPGGRGDLKFGTYTLENEHLNRLQ---SQRALLLQGTESLNRATQSIERSHRIAA 154
Query: 146 ETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIIS 205
ET+++G I+++L +QR L + L ++N+SKS+KIL +MSR++ +K ++ S+I
Sbjct: 155 ETDQIGSEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLL-SVII 213
Query: 206 VLVFAILL-ILYFKLTR 221
VL AIL+ ++Y+K R
Sbjct: 214 VLELAILVGLVYYKFFR 230
>sp|O88384|VTI1B_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Mus musculus GN=Vti1b PE=1 SV=1
Length = 232
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 12/197 (6%)
Query: 32 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91
E KK+ + + +A+ + +M+ E R + ++SKLR Y+ DL L EV R
Sbjct: 39 EEKKKLVRDFDENQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREV-RS 97
Query: 92 TSGNVNQAARDEL------LESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTML 145
T R +L LE+ + + QR LL TE LN +T I+ S R
Sbjct: 98 TPLTAAPGGRGDLKYGTYTLENEHLNRLQ---SQRALLLQGTESLNRATQSIERSHRIAT 154
Query: 146 ETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIIS 205
ET+++G I+++L +QR L + L ++N+SKS+KIL +MSR++ +K ++ S+I
Sbjct: 155 ETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLL-SVII 213
Query: 206 VLVFAILL-ILYFKLTR 221
+L AIL+ ++Y+K R
Sbjct: 214 LLELAILVGLVYYKFFR 230
>sp|Q2KIU0|VTI1B_BOVIN Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Bos taurus GN=VTI1B PE=2 SV=1
Length = 232
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 105/194 (54%), Gaps = 6/194 (3%)
Query: 32 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91
E KK+ + + +A+ + +M+ E R + + ++SKLR Y+ DL L EV R
Sbjct: 39 EEKKKLIRDFDEKQQEANETLAEMEEELRYAPLSFRNPMMSKLRTYRKDLAKLHREV-RS 97
Query: 92 TSGNVNQAARDELLESGMA---DAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETE 148
T AR ++ A + M QR LL T+ LN +T I+ S R ET+
Sbjct: 98 TPLTATPGARGDMKYGTYAVENEHMNRLQSQRALLLQGTDSLNRATQSIERSHRIAAETD 157
Query: 149 ELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLV 208
++G I+++L +QR L + L +N+SKS+KIL +MSR+++ +K ++ SI+ +L
Sbjct: 158 QIGSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLLL-SIVILLE 216
Query: 209 FAIL-LILYFKLTR 221
AIL ++Y+K R
Sbjct: 217 LAILGGLVYYKFLR 230
>sp|Q54CK6|VTI1A_DICDI Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Dictyostelium discoideum GN=vti1A PE=1 SV=1
Length = 217
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 101/195 (51%), Gaps = 5/195 (2%)
Query: 4 VFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQ 63
VFE E+ + + ++R+ GE KK + E++ +D+A I +M+ A++
Sbjct: 3 VFERTEQNFQHVCNSITRRIKQLPNYGGEKKKIAVREVENDIDEALKFISEMEKLAQNHP 62
Query: 64 PNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSAD-QRGR 122
+K L +K ++Y +D+ K EV+ + NQ + S D D QR
Sbjct: 63 QRIK--LQTKTKQYHSDIQKYKREVQLAQLQSSNQTNSNPW--SNAPDDYQSQYDNQRQH 118
Query: 123 LLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKS 182
LL + L+ ++DR+ + + ++E++G +IL DL +Q + + + LH DD I +
Sbjct: 119 LLQGSNMLDSTSDRLLRTHQISAQSEQIGQNILMDLGKQGEQIRGMRDKLHETDDQIKSA 178
Query: 183 KKILTAMSRRMSRDK 197
+KI+T ++RR++ +K
Sbjct: 179 RKIMTGIARRLATNK 193
>sp|P78768|VTI1_SCHPO Vesicle transport v-SNARE protein vti1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=vti1 PE=2 SV=2
Length = 214
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 100/197 (50%), Gaps = 8/197 (4%)
Query: 6 EGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPN 65
E YE++Y L A + K S GE + + L++ D +I +M++E + +
Sbjct: 2 ETYEQEYRLLRADIEEKLNDLSK-SGE--NSVIQSCQRLLNEIDEVIGQMEIEITGIPTS 58
Query: 66 VKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQA---ARDELLESGMADAMMVSADQRGR 122
+ ++ ++R Y++ L + +K + +A RDE SG A DQR R
Sbjct: 59 ERGLVNGRIRSYRSTLEEWRRHLKEEIGKSDRKALFGNRDET--SGDYIASDQDYDQRTR 116
Query: 123 LLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKS 182
LL T RL S+ R+ ES+R ETE +G SIL+DLH QR L H+ L ++ +S
Sbjct: 117 LLQGTNRLEQSSQRLLESQRIANETEGIGASILRDLHGQRNQLEHSLEMLGDTSGHLDRS 176
Query: 183 KKILTAMSRRMSRDKWI 199
+ L M+RR++ +++
Sbjct: 177 LRTLKTMARRLAMNRFF 193
>sp|Q9UEU0|VTI1B_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Homo sapiens GN=VTI1B PE=1 SV=3
Length = 232
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 101/193 (52%), Gaps = 4/193 (2%)
Query: 32 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91
E KK+ + + +A+ + +M+ E R + + ++SKLR Y+ DL L EV R
Sbjct: 39 EEKKKLIRDFDEKQQEANETLAEMEEELRYAPLSFRNPMMSKLRNYRKDLAKLHREV-RS 97
Query: 92 TSGNVNQAARDELLESGMA---DAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETE 148
T R ++ A + M QR LL TE LN +T I+ S R ET+
Sbjct: 98 TPLTATPGGRGDMKYGIYAVENEHMNRLQSQRAMLLQGTESLNRATQSIERSHRIATETD 157
Query: 149 ELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLV 208
++G I+++L +QR L + L +N+SKS+KIL +MSR+++ +K ++ II + +
Sbjct: 158 QIGSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLLLSIIILLEL 217
Query: 209 FAILLILYFKLTR 221
+ ++Y+K R
Sbjct: 218 AILGGLVYYKFFR 230
>sp|Q04338|VTI1_YEAST t-SNARE VTI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=VTI1 PE=1 SV=3
Length = 217
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 14/178 (7%)
Query: 31 GELKKQKLSEIKTGL-------DDADALIRKMDLEARSL--QPNVKAMLLSKLREYKTDL 81
E Q LS+ T L D+ L+ +MD+E + + +A +KLRE+K
Sbjct: 24 AEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWK--- 80
Query: 82 NNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESR 141
+++++KR V+ RD L G +A + DQR +LL + L S DR+K++
Sbjct: 81 KTIQSDIKRPLQSLVDSGDRDRLF--GDLNASNIDDDQRQQLLSNHAILQKSGDRLKDAS 138
Query: 142 RTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWI 199
R ETE +G I+ DL QR++L +A TL D + KS K L M+RR+ +K+I
Sbjct: 139 RIANETEGIGSQIMMDLRSQRETLENARQTLFQADSYVDKSIKTLKTMTRRLVANKFI 196
>sp|Q9SJL6|MEM11_ARATH Membrin-11 OS=Arabidopsis thaliana GN=MEMB11 PE=1 SV=1
Length = 225
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 137 IKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRD 196
+K S+R + E+ GV+IL +QR L A V + + S +L + RR D
Sbjct: 143 VKNSKRMLEESFSSGVAILSKYAEQRDRLKSAQRKALDVLNTVGLSNSVLRLIERRNRVD 202
Query: 197 KWI-MGSIISVLVFAILLILYFKLTR 221
WI +I+ LV +L L+ + TR
Sbjct: 203 TWIKYAGMIATLV---ILYLFIRWTR 225
>sp|Q9FK28|MEM12_ARATH Membrin-12 OS=Arabidopsis thaliana GN=MEMB12 PE=2 SV=1
Length = 219
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 137 IKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRD 196
+K S+R + ++ + GV+IL +QR L A V + + S +L + RR D
Sbjct: 137 VKNSKRMLEDSFQSGVAILSKYAEQRDRLKSAQRKALDVLNTVGLSNSVLRLIERRNRVD 196
Query: 197 KWI-MGSIISVLVFAILLILYFKLTR 221
WI +I+ LV +L L+ + TR
Sbjct: 197 TWIKYAGMIATLV---ILYLFIRWTR 219
>sp|Q9VE50|GOSR1_DROME Golgi SNAP receptor complex member 1 OS=Drosophila melanogaster
GN=Gos28 PE=2 SV=1
Length = 232
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 64 PNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLE-SGMA----DAMMVSAD 118
P A + L+ ++ L + E ++ + + + R+ELL SG+A + +
Sbjct: 81 PASGAAAMHTLQRHREILQGYRQEFNKICANHTMRIEREELLRGSGLATSSGSPSISGLN 140
Query: 119 QRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDN 178
+R L + LN ++ + + +ET + LH QRQ+ + + +
Sbjct: 141 RREMYLKESGHLNSASHLVNDQINIAIETRD-------HLHAQRQAFKRLQTRFNDISNR 193
Query: 179 ISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILY 216
++ ++ + RD I+G++I V ILL+LY
Sbjct: 194 FPLISSLIQRINIKKRRDSLILGAVIGFCV--ILLLLY 229
>sp|Q9VRL2|GOSR2_DROME Probable Golgi SNAP receptor complex member 2 OS=Drosophila
melanogaster GN=membrin PE=2 SV=1
Length = 216
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 151 GVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDK--WIMGSIISVLV 208
G IL+ L QR +L AH + + + S + + RR+ D+ +I G ++++L+
Sbjct: 147 GSGILESLISQRMTLGGAHKRIQAIGSTLGLSNHTMKLIERRLVEDRRIFIGGVVVTLLI 206
Query: 209 FAILLILYF 217
A LI+YF
Sbjct: 207 IA--LIIYF 213
>sp|Q5RBL6|GOSR1_PONAB Golgi SNAP receptor complex member 1 OS=Pongo abelii GN=GOSR1 PE=2
SV=1
Length = 248
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 74/155 (47%), Gaps = 7/155 (4%)
Query: 64 PNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRL 123
P++ A L+ L+ ++ L + +E + + ++ R+ L+ S D + + + G
Sbjct: 96 PSLNAALMHTLQRHRDILQDYTHEFHKTKANFMSIRERENLMGSVRKD---IESYKSGSG 152
Query: 124 LMS--TERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISK 181
+ + TE D ++ S R + ET + ++ +++ QR L H+ ++ + +
Sbjct: 153 VNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPA 212
Query: 182 SKKILTAMSRRMSRDKWIMGSIISVLVFAILLILY 216
++ ++ R RD I+G +I + ILL+LY
Sbjct: 213 VNSLIQRINLRKRRDSLILGGVIGICT--ILLLLY 245
>sp|Q62931|GOSR1_RAT Golgi SNAP receptor complex member 1 OS=Rattus norvegicus GN=Gosr1
PE=1 SV=1
Length = 250
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 73/155 (47%), Gaps = 7/155 (4%)
Query: 64 PNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRL 123
P++ A L+ L+ ++ L + +E + + + R+ L+ S D + + + G
Sbjct: 98 PSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKD---IESYKSGSG 154
Query: 124 LMS--TERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISK 181
+ + TE D ++ S R + ET + ++ +++ QR L H+ ++ + +
Sbjct: 155 VNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPA 214
Query: 182 SKKILTAMSRRMSRDKWIMGSIISVLVFAILLILY 216
++ ++ R RD I+G +I + ILL+LY
Sbjct: 215 VNSLIQRINLRKRRDSLILGGVIGICT--ILLLLY 247
>sp|O08522|GOSR1_CRIGR Golgi SNAP receptor complex member 1 OS=Cricetulus griseus GN=GOSR1
PE=1 SV=1
Length = 250
Score = 34.3 bits (77), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 73/155 (47%), Gaps = 7/155 (4%)
Query: 64 PNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRL 123
P++ A L+ L+ ++ L + +E + + + R+ L+ S D + + + G
Sbjct: 98 PSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKD---IESYKSGSG 154
Query: 124 LMS--TERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISK 181
+ + TE D ++ S R + ET + ++ +++ QR L H+ ++ + +
Sbjct: 155 VNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPA 214
Query: 182 SKKILTAMSRRMSRDKWIMGSIISVLVFAILLILY 216
++ ++ R RD I+G +I + ILL+LY
Sbjct: 215 VNSLIQRINLRKRRDSLILGGVIGICT--ILLLLY 247
>sp|O95249|GOSR1_HUMAN Golgi SNAP receptor complex member 1 OS=Homo sapiens GN=GOSR1 PE=1
SV=1
Length = 250
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 73/155 (47%), Gaps = 7/155 (4%)
Query: 64 PNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRL 123
P++ A L+ L+ ++ L + +E + + + R+ L+ S D + + + G
Sbjct: 98 PSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKD---IESYKSGSG 154
Query: 124 LMS--TERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISK 181
+ + TE D ++ S R + ET + ++ +++ QR L H+ ++ + +
Sbjct: 155 VNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPA 214
Query: 182 SKKILTAMSRRMSRDKWIMGSIISVLVFAILLILY 216
++ ++ R RD I+G +I + ILL+LY
Sbjct: 215 VNSLIQRINLRKRRDSLILGGVIGICT--ILLLLY 247
>sp|O88630|GOSR1_MOUSE Golgi SNAP receptor complex member 1 OS=Mus musculus GN=Gosr1 PE=1
SV=2
Length = 250
Score = 34.3 bits (77), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 72/155 (46%), Gaps = 7/155 (4%)
Query: 64 PNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRL 123
P++ A L+ L+ ++ L + +E + + R+ L+ S D + + + G
Sbjct: 98 PSLNAALMHTLQRHRDILQDYTHEFHKTKANFTAIRERENLMGSVRKD---IESYKSGSG 154
Query: 124 LMS--TERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISK 181
+ + TE D ++ S R + ET + ++ +++ QR L H+ ++ + +
Sbjct: 155 VNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPA 214
Query: 182 SKKILTAMSRRMSRDKWIMGSIISVLVFAILLILY 216
++ ++ R RD I+G +I + ILL+LY
Sbjct: 215 VNSLIQRINLRKRRDSLILGGVIGICT--ILLLLY 247
>sp|P48759|PTX3_MOUSE Pentraxin-related protein PTX3 OS=Mus musculus GN=Ptx3 PE=1 SV=2
Length = 381
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 15 LSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAM--LLS 72
L+ G++R C A D L + ++ D + L R D EAR + V + +L
Sbjct: 95 LAGGMARPCAAGGPADARLVRALEPLLQESRDASLRLARLEDAEARRPEATVPGLGAVLE 154
Query: 73 KLREYKTDLNNLKNEVKR 90
+LR + DL+ +++ V R
Sbjct: 155 ELRRTRADLSAVQSWVAR 172
>sp|Q2TBU3|GOSR1_BOVIN Golgi SNAP receptor complex member 1 OS=Bos taurus GN=GOSR1 PE=2
SV=1
Length = 250
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 72/155 (46%), Gaps = 7/155 (4%)
Query: 64 PNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRL 123
P++ A L+ L+ ++ L + +E + + V R+ L+ S D + + + G
Sbjct: 98 PSLNAALMHTLQRHRDILQDYTHEFHKTKANFVAIRERENLMGSVRKD---IESYKSGSG 154
Query: 124 LMS--TERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISK 181
+ + TE D ++ S R + ET + ++ +++ QR L + ++ + +
Sbjct: 155 VNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIQSKMNTLANRFPA 214
Query: 182 SKKILTAMSRRMSRDKWIMGSIISVLVFAILLILY 216
++ ++ R RD I+G +I V ILL+LY
Sbjct: 215 VNSLIQRINLRKRRDSLILGGVIGVCT--ILLLLY 247
>sp|Q54HH2|SRR_DICDI Probable serine racemase OS=Dictyostelium discoideum GN=srr PE=3
SV=1
Length = 324
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 43/99 (43%)
Query: 48 ADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLES 107
L+ + A+SL PN+K L T + L E+++ T G N A L
Sbjct: 183 GGGLLSGTCITAKSLNPNIKVFAAEPLGADDTYRSLLSGEIQKHTPGKPNTIADGLLTTV 242
Query: 108 GMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLE 146
G ++ + G +L++ + + ++ + E + ++E
Sbjct: 243 GSLTFPIIKENCDGVILVTEDEIKYAMKLVWERMKIIIE 281
>sp|O97594|SMC3_BOVIN Structural maintenance of chromosomes protein 3 OS=Bos taurus
GN=SMC3 PE=1 SV=1
Length = 1218
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 44/202 (21%)
Query: 28 ALDGELKKQKLSEIKTGLDDADA----------LIRKMDLEARSLQPNVKAMLLSKLREY 77
AL+ + Q+L+E + LD+ A +R +AR +++ ++RE
Sbjct: 222 ALEYTIYNQELNETRAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIE----RQVREL 277
Query: 78 KTDLNNLKNEVKRVTSG---NVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHST 134
KT ++ +K E +++++ + Q + EL + D + +++QR RLL ++L
Sbjct: 278 KTKISAMKEEKEQLSAERQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKL---L 334
Query: 135 DRIKESRRTMLET----------EELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKK 184
++I+E ++ + ET EE G++ L Q+R L G
Sbjct: 335 EKIEEKQKELAETEPKFNSVKEKEERGIARLAQATQERTDLYAKQG--RG---------- 382
Query: 185 ILTAMSRRMSRDKWIMGSIISV 206
+ + + RDKWI + S+
Sbjct: 383 --SQFTSKEERDKWIKKELKSL 402
>sp|P97690|SMC3_RAT Structural maintenance of chromosomes protein 3 OS=Rattus
norvegicus GN=Smc3 PE=1 SV=1
Length = 1191
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 44/202 (21%)
Query: 28 ALDGELKKQKLSEIKTGLDDADA----------LIRKMDLEARSLQPNVKAMLLSKLREY 77
AL+ + Q+L+E + LD+ A +R +AR +++ ++RE
Sbjct: 222 ALEYTIYNQELNETRAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIE----RQVREL 277
Query: 78 KTDLNNLKNEVKRVTSG---NVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHST 134
KT ++ +K E +++++ + Q + EL + D + +++QR RLL ++L
Sbjct: 278 KTKISAMKEEKEQLSAERQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKL---L 334
Query: 135 DRIKESRRTMLET----------EELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKK 184
++I+E ++ + ET EE G++ L Q+R L G
Sbjct: 335 EKIEEKQKELAETEPKFNSVKEKEERGIARLAQATQERTDLYAKQG--RG---------- 382
Query: 185 ILTAMSRRMSRDKWIMGSIISV 206
+ + + RDKWI + S+
Sbjct: 383 --SQFTSKEERDKWIKKELKSL 402
>sp|Q9CW03|SMC3_MOUSE Structural maintenance of chromosomes protein 3 OS=Mus musculus
GN=Smc3 PE=1 SV=2
Length = 1217
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 44/202 (21%)
Query: 28 ALDGELKKQKLSEIKTGLDDADA----------LIRKMDLEARSLQPNVKAMLLSKLREY 77
AL+ + Q+L+E + LD+ A +R +AR +++ ++RE
Sbjct: 222 ALEYTIYNQELNETRAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIE----RQVREL 277
Query: 78 KTDLNNLKNEVKRVTSG---NVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHST 134
KT ++ +K E +++++ + Q + EL + D + +++QR RLL ++L
Sbjct: 278 KTKISAMKEEKEQLSAERQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKL---L 334
Query: 135 DRIKESRRTMLET----------EELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKK 184
++I+E ++ + ET EE G++ L Q+R L G
Sbjct: 335 EKIEEKQKELAETEPKFNSVKEKEERGIARLAQATQERTDLYAKQG--RG---------- 382
Query: 185 ILTAMSRRMSRDKWIMGSIISV 206
+ + + RDKWI + S+
Sbjct: 383 --SQFTSKEERDKWIKKELKSL 402
>sp|Q5R4K5|SMC3_PONAB Structural maintenance of chromosomes protein 3 OS=Pongo abelii
GN=SMC3 PE=2 SV=1
Length = 1217
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 44/202 (21%)
Query: 28 ALDGELKKQKLSEIKTGLDDADA----------LIRKMDLEARSLQPNVKAMLLSKLREY 77
AL+ + Q+L+E + LD+ A +R +AR +++ ++RE
Sbjct: 222 ALEYTIYNQELNETRAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIE----RQVREL 277
Query: 78 KTDLNNLKNEVKRVTSG---NVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHST 134
KT ++ +K E +++++ + Q + EL + D + +++QR RLL ++L
Sbjct: 278 KTKISAMKEEKEQLSAERQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKL---L 334
Query: 135 DRIKESRRTMLET----------EELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKK 184
++I+E ++ + ET EE G++ L Q+R L G
Sbjct: 335 EKIEEKQKELAETEPKFNSVKEKEERGIARLAQATQERTDLYAKQG--RG---------- 382
Query: 185 ILTAMSRRMSRDKWIMGSIISV 206
+ + + RDKWI + S+
Sbjct: 383 --SQFTSKEERDKWIKKELKSL 402
>sp|Q9UQE7|SMC3_HUMAN Structural maintenance of chromosomes protein 3 OS=Homo sapiens
GN=SMC3 PE=1 SV=2
Length = 1217
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 44/202 (21%)
Query: 28 ALDGELKKQKLSEIKTGLDDADA----------LIRKMDLEARSLQPNVKAMLLSKLREY 77
AL+ + Q+L+E + LD+ A +R +AR +++ ++RE
Sbjct: 222 ALEYTIYNQELNETRAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIE----RQVREL 277
Query: 78 KTDLNNLKNEVKRVTSG---NVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHST 134
KT ++ +K E +++++ + Q + EL + D + +++QR RLL ++L
Sbjct: 278 KTKISAMKEEKEQLSAERQEQIKQRTKLELKAKDLQDELAGNSEQRKRLLKERQKL---L 334
Query: 135 DRIKESRRTMLET----------EELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKK 184
++I+E ++ + ET EE G++ L Q+R L G
Sbjct: 335 EKIEEKQKELAETEPKFNSVKEKEERGIARLAQATQERTDLYAKQG--RG---------- 382
Query: 185 ILTAMSRRMSRDKWIMGSIISV 206
+ + + RDKWI + S+
Sbjct: 383 --SQFTSKEERDKWIKKELKSL 402
>sp|O93309|SMC3_XENLA Structural maintenance of chromosomes protein 3 OS=Xenopus laevis
GN=smc3 PE=1 SV=2
Length = 1209
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 67/147 (45%), Gaps = 30/147 (20%)
Query: 73 KLREYKTDLNNLKNEVKRVTSG---NVNQAARDELLESGMADAMMVSADQRGRLLMSTER 129
++RE K+ ++ +K E ++++S + Q + EL + D + +++QR RLL ++
Sbjct: 273 QVRELKSKISAMKEEKEQLSSERQEQIKQRTKLELKTKDLQDELAGNSEQRKRLLKERQK 332
Query: 130 LNHSTDRIKESRRTMLET----------EELGVSILQDLHQQRQSLLHAHNTLHGVDDNI 179
L ++I+E ++ + ET EE G++ L Q+R L G
Sbjct: 333 L---LEKIEEKQKELAETEPKFSSVKQKEESGIARLAQATQERTDLYAKQG--RG----- 382
Query: 180 SKSKKILTAMSRRMSRDKWIMGSIISV 206
+ + + RDKWI + S+
Sbjct: 383 -------SQFTSKEERDKWIKKELKSL 402
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,176,114
Number of Sequences: 539616
Number of extensions: 2300336
Number of successful extensions: 11303
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 251
Number of HSP's that attempted gapping in prelim test: 11138
Number of HSP's gapped (non-prelim): 406
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)