Query 027611
Match_columns 221
No_of_seqs 121 out of 781
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 12:32:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1666 V-SNARE [Intracellular 100.0 2.1E-50 4.5E-55 310.7 25.6 220 1-220 1-220 (220)
2 KOG3251 Golgi SNAP receptor co 99.9 1.7E-22 3.7E-27 157.1 21.1 205 1-216 1-210 (213)
3 KOG3208 SNARE protein GS28 [In 99.9 6.4E-21 1.4E-25 148.1 17.0 203 1-212 3-226 (231)
4 PF05008 V-SNARE: Vesicle tran 99.6 3E-14 6.5E-19 96.7 11.6 79 12-90 1-79 (79)
5 PF12352 V-SNARE_C: Snare regi 99.5 5.1E-14 1.1E-18 92.3 7.6 65 129-193 2-66 (66)
6 PF03908 Sec20: Sec20; InterP 99.4 2.3E-12 5E-17 89.9 11.1 87 132-218 5-91 (92)
7 KOG3202 SNARE protein TLG1/Syn 98.7 8.6E-06 1.9E-10 65.8 21.5 180 9-191 12-208 (235)
8 PF09753 Use1: Membrane fusion 98.3 0.0002 4.3E-09 59.0 18.3 81 138-220 170-251 (251)
9 KOG0812 SNARE protein SED5/Syn 98.2 0.0019 4E-08 53.2 22.7 74 135-208 227-300 (311)
10 PF00957 Synaptobrevin: Synapt 98.0 0.00027 5.9E-09 48.7 11.9 86 134-219 2-87 (89)
11 KOG0810 SNARE protein Syntaxin 97.9 0.008 1.7E-07 50.6 21.1 81 135-215 206-289 (297)
12 KOG0809 SNARE protein TLG2/Syn 97.9 0.0046 9.9E-08 51.1 18.8 193 5-197 59-280 (305)
13 COG5074 t-SNARE complex subuni 97.7 0.014 3E-07 46.8 21.7 80 135-215 185-268 (280)
14 KOG0860 Synaptobrevin/VAMP-lik 97.6 0.0018 3.9E-08 46.3 10.6 83 134-216 28-114 (116)
15 KOG0811 SNARE protein PEP12/VA 97.4 0.057 1.2E-06 44.8 20.8 87 133-219 178-267 (269)
16 KOG1666 V-SNARE [Intracellular 97.2 0.074 1.6E-06 42.2 17.6 144 40-210 69-215 (220)
17 KOG3385 V-SNARE [Intracellular 97.2 0.002 4.3E-08 45.9 6.8 79 136-215 37-115 (118)
18 KOG3894 SNARE protein Syntaxin 97.2 0.083 1.8E-06 44.3 17.3 86 132-217 229-314 (316)
19 COG5325 t-SNARE complex subuni 97.1 0.13 2.9E-06 42.3 21.1 87 134-220 194-281 (283)
20 KOG3065 SNAP-25 (synaptosome-a 97.0 0.0024 5.2E-08 52.9 7.1 63 129-191 73-135 (273)
21 smart00397 t_SNARE Helical reg 97.0 0.0038 8.1E-08 39.9 6.6 60 129-188 6-65 (66)
22 PF05739 SNARE: SNARE domain; 96.3 0.046 9.9E-07 34.7 7.9 58 135-192 4-61 (63)
23 KOG2678 Predicted membrane pro 96.2 0.44 9.5E-06 38.1 14.0 76 146-221 166-241 (244)
24 PF04210 MtrG: Tetrahydrometha 96.0 0.06 1.3E-06 34.7 7.1 57 164-220 13-70 (70)
25 PRK01026 tetrahydromethanopter 95.8 0.093 2E-06 34.7 7.3 57 164-220 16-73 (77)
26 COG4064 MtrG Tetrahydromethano 95.7 0.079 1.7E-06 34.1 6.7 54 167-220 19-73 (75)
27 TIGR01149 mtrG N5-methyltetrah 95.6 0.13 2.9E-06 33.1 7.3 56 164-219 13-69 (70)
28 PF00957 Synaptobrevin: Synapt 95.1 0.6 1.3E-05 31.9 10.2 55 155-215 33-87 (89)
29 cd00193 t_SNARE Soluble NSF (N 95.0 0.18 3.8E-06 31.3 6.7 53 135-187 6-58 (60)
30 PRK10884 SH3 domain-containing 94.7 0.94 2E-05 36.2 11.7 62 151-215 130-191 (206)
31 PF06008 Laminin_I: Laminin Do 94.5 2.4 5.1E-05 35.1 17.4 23 5-27 54-76 (264)
32 PF09889 DUF2116: Uncharacteri 93.9 0.22 4.9E-06 31.4 5.1 33 184-216 26-58 (59)
33 PF05478 Prominin: Prominin; 92.9 9.4 0.0002 37.0 20.5 88 130-217 337-433 (806)
34 PF12911 OppC_N: N-terminal TM 92.2 0.22 4.7E-06 30.8 3.4 32 184-215 3-34 (56)
35 KOG0859 Synaptobrevin/VAMP-lik 90.4 1.5 3.2E-05 34.5 6.9 84 134-217 124-207 (217)
36 PF06160 EzrA: Septation ring 90.2 15 0.00033 33.9 16.6 85 8-95 250-336 (560)
37 PF06160 EzrA: Septation ring 89.8 16 0.00036 33.7 16.2 88 4-92 345-434 (560)
38 PF09889 DUF2116: Uncharacteri 89.8 1.5 3.3E-05 27.6 5.4 34 187-220 26-59 (59)
39 KOG0862 Synaptobrevin/VAMP-lik 89.6 6.4 0.00014 31.5 10.0 65 135-199 134-198 (216)
40 PHA03240 envelope glycoprotein 86.7 0.72 1.6E-05 36.7 3.0 21 199-219 213-233 (258)
41 PF15188 CCDC-167: Coiled-coil 86.7 7.7 0.00017 26.4 7.6 58 37-94 6-65 (85)
42 KOG3065 SNAP-25 (synaptosome-a 85.4 3.6 7.8E-05 34.3 6.7 59 131-189 214-272 (273)
43 TIGR01294 P_lamban phospholamb 85.3 3.3 7.1E-05 24.4 4.5 28 189-216 23-50 (52)
44 PF06008 Laminin_I: Laminin Do 83.1 25 0.00054 29.0 16.9 24 4-27 46-69 (264)
45 KOG3208 SNARE protein GS28 [In 83.0 23 0.00049 28.5 18.9 153 4-183 52-204 (231)
46 PF04272 Phospholamban: Phosph 82.8 4 8.7E-05 24.0 4.2 26 190-215 24-49 (52)
47 PHA02650 hypothetical protein; 82.7 2.6 5.6E-05 28.0 3.8 23 199-221 52-74 (81)
48 PHA03164 hypothetical protein; 81.6 2.1 4.5E-05 28.2 3.0 22 196-217 59-80 (88)
49 COG3883 Uncharacterized protei 81.5 30 0.00064 28.8 14.6 72 33-108 35-106 (265)
50 KOG4603 TBP-1 interacting prot 81.0 12 0.00026 28.9 7.4 59 37-95 87-146 (201)
51 KOG0250 DNA repair protein RAD 80.8 63 0.0014 32.1 17.9 55 6-60 277-333 (1074)
52 PHA02975 hypothetical protein; 80.5 4.6 0.0001 26.1 4.3 23 198-220 46-68 (69)
53 PF03904 DUF334: Domain of unk 79.7 31 0.00067 27.9 15.3 29 146-174 110-138 (230)
54 PF08702 Fib_alpha: Fibrinogen 79.6 24 0.00052 26.6 9.9 30 1-30 23-52 (146)
55 PRK14762 membrane protein; Pro 79.5 2.4 5.2E-05 21.6 2.2 16 197-212 2-17 (27)
56 PHA02844 putative transmembran 79.4 3.5 7.5E-05 27.1 3.5 21 201-221 53-73 (75)
57 PF00261 Tropomyosin: Tropomyo 79.1 33 0.00071 27.9 12.2 12 73-84 65-76 (237)
58 PF12669 P12: Virus attachment 78.4 1.4 3.1E-05 27.6 1.5 8 213-220 14-21 (58)
59 PF01102 Glycophorin_A: Glycop 78.3 3.1 6.7E-05 30.3 3.4 20 198-217 68-87 (122)
60 PF04678 DUF607: Protein of un 77.9 25 0.00055 27.3 8.8 50 171-220 65-115 (180)
61 PF10779 XhlA: Haemolysin XhlA 77.9 16 0.00035 23.7 8.2 27 189-215 43-69 (71)
62 PF04880 NUDE_C: NUDE protein, 77.9 4.5 9.7E-05 31.2 4.4 49 38-92 2-50 (166)
63 PF08114 PMP1_2: ATPase proteo 77.6 3.2 6.9E-05 23.9 2.6 18 202-219 16-33 (43)
64 PF14362 DUF4407: Domain of un 77.5 42 0.0009 28.2 17.8 21 200-220 265-285 (301)
65 PF12575 DUF3753: Protein of u 77.3 3.9 8.4E-05 26.8 3.3 22 198-219 50-71 (72)
66 TIGR00606 rad50 rad50. This fa 77.0 94 0.002 32.0 17.0 30 66-95 882-911 (1311)
67 PF12352 V-SNARE_C: Snare regi 76.9 16 0.00035 23.1 7.1 61 122-182 2-62 (66)
68 PF06024 DUF912: Nucleopolyhed 76.5 1.1 2.3E-05 31.6 0.6 22 196-217 62-83 (101)
69 PF07106 TBPIP: Tat binding pr 76.0 33 0.00071 26.2 10.4 58 37-94 80-138 (169)
70 PRK11519 tyrosine kinase; Prov 75.4 75 0.0016 30.4 12.8 55 36-90 274-329 (719)
71 PHA02819 hypothetical protein; 75.1 6.5 0.00014 25.5 3.8 21 200-220 50-70 (71)
72 PF00523 Fusion_gly: Fusion gl 74.8 1.3 2.9E-05 40.0 0.9 23 38-60 138-160 (490)
73 PF05961 Chordopox_A13L: Chord 74.7 4.7 0.0001 25.9 3.1 16 202-217 6-21 (68)
74 PF00558 Vpu: Vpu protein; In 73.6 5 0.00011 27.0 3.2 21 198-218 5-25 (81)
75 PF07851 TMPIT: TMPIT-like pro 73.1 50 0.0011 28.4 9.9 84 3-91 4-87 (330)
76 PRK04778 septation ring format 72.6 82 0.0018 29.2 16.7 84 9-95 255-340 (569)
77 PF05546 She9_MDM33: She9 / Md 72.6 47 0.001 26.5 15.2 50 2-57 4-53 (207)
78 PF03962 Mnd1: Mnd1 family; I 72.0 39 0.00085 26.5 8.5 60 32-91 65-129 (188)
79 PF08855 DUF1825: Domain of un 71.5 34 0.00073 24.4 7.4 56 3-58 8-63 (108)
80 PF14937 DUF4500: Domain of un 71.3 6 0.00013 26.8 3.1 25 195-219 35-59 (86)
81 PHA03049 IMV membrane protein; 70.8 6.9 0.00015 25.1 3.2 16 202-217 6-21 (68)
82 PF10717 ODV-E18: Occlusion-de 70.8 6.3 0.00014 26.5 3.1 16 202-217 29-44 (85)
83 PF07106 TBPIP: Tat binding pr 70.8 38 0.00082 25.9 8.1 25 38-62 74-98 (169)
84 PHA02692 hypothetical protein; 70.6 7.7 0.00017 25.2 3.4 21 199-219 49-69 (70)
85 PRK10132 hypothetical protein; 70.5 36 0.00078 24.2 9.7 53 164-216 53-105 (108)
86 PF15018 InaF-motif: TRP-inter 70.2 7.8 0.00017 22.1 3.0 19 202-220 13-31 (38)
87 PRK15422 septal ring assembly 69.2 31 0.00067 23.0 9.7 24 38-61 6-29 (79)
88 PHA03054 IMV membrane protein; 69.1 9.5 0.00021 24.8 3.6 19 201-219 53-71 (72)
89 PF05283 MGC-24: Multi-glycosy 69.1 5.4 0.00012 31.3 3.0 26 196-221 159-185 (186)
90 PF13800 Sigma_reg_N: Sigma fa 68.8 13 0.00028 25.6 4.6 21 184-204 3-23 (96)
91 PRK04778 septation ring format 67.8 1E+02 0.0023 28.5 16.2 86 5-91 350-437 (569)
92 PF09177 Syntaxin-6_N: Syntaxi 67.8 37 0.00081 23.4 9.6 86 5-90 3-95 (97)
93 COG3074 Uncharacterized protei 67.5 31 0.00068 22.4 8.6 20 40-59 8-27 (79)
94 PF02439 Adeno_E3_CR2: Adenovi 66.9 13 0.00028 21.1 3.4 18 200-217 9-26 (38)
95 PF14257 DUF4349: Domain of un 66.9 71 0.0015 26.2 13.6 82 12-94 107-191 (262)
96 COG4575 ElaB Uncharacterized c 66.8 35 0.00076 24.1 6.3 17 9-25 14-30 (104)
97 PF06716 DUF1201: Protein of u 66.5 19 0.00041 21.4 4.2 19 199-217 10-28 (54)
98 PF05961 Chordopox_A13L: Chord 66.5 9.5 0.00021 24.6 3.2 21 198-218 5-25 (68)
99 PF09753 Use1: Membrane fusion 66.1 72 0.0016 26.1 17.2 56 162-217 187-244 (251)
100 PF10661 EssA: WXG100 protein 65.7 7.2 0.00016 29.4 3.0 20 200-219 121-140 (145)
101 COG3074 Uncharacterized protei 65.2 35 0.00076 22.2 6.7 21 1-21 1-22 (79)
102 PRK14065 exodeoxyribonuclease 65.0 33 0.00071 23.2 5.6 50 12-61 27-78 (86)
103 PF10805 DUF2730: Protein of u 64.9 47 0.001 23.4 8.0 57 35-91 34-91 (106)
104 KOG0860 Synaptobrevin/VAMP-lik 64.5 51 0.0011 23.8 11.4 40 141-180 28-67 (116)
105 PF04999 FtsL: Cell division p 64.3 22 0.00047 24.4 5.1 27 190-217 6-33 (97)
106 PF12777 MT: Microtubule-bindi 63.9 68 0.0015 27.6 9.1 96 125-220 225-327 (344)
107 PF15106 TMEM156: TMEM156 prot 62.6 11 0.00023 30.2 3.5 24 197-220 175-198 (226)
108 PRK10404 hypothetical protein; 62.6 51 0.0011 23.1 7.4 16 9-24 11-26 (101)
109 PF01519 DUF16: Protein of unk 62.5 43 0.00093 23.6 6.1 38 156-193 60-97 (102)
110 PRK09759 small toxic polypepti 62.3 5 0.00011 24.4 1.3 21 196-216 3-23 (50)
111 PF09006 Surfac_D-trimer: Lung 62.1 31 0.00067 20.5 4.6 33 69-109 3-35 (46)
112 PF04799 Fzo_mitofusin: fzo-li 62.0 53 0.0012 25.4 7.1 53 36-88 113-167 (171)
113 PTZ00382 Variant-specific surf 61.4 1.9 4.2E-05 30.0 -0.7 19 203-221 75-93 (96)
114 PF10498 IFT57: Intra-flagella 61.0 70 0.0015 27.9 8.6 97 1-109 232-328 (359)
115 TIGR01069 mutS2 MutS2 family p 60.9 1.2E+02 0.0026 29.4 10.9 20 6-25 507-526 (771)
116 PF05008 V-SNARE: Vesicle tran 60.4 44 0.00095 21.8 5.9 51 41-91 23-73 (79)
117 cd02682 MIT_AAA_Arch MIT: doma 60.2 47 0.001 22.0 6.8 48 41-88 22-70 (75)
118 PF11337 DUF3139: Protein of u 59.8 11 0.00023 25.5 2.8 11 197-207 5-15 (85)
119 PRK10929 putative mechanosensi 59.7 2.1E+02 0.0044 29.2 14.9 34 156-189 272-305 (1109)
120 KOG1693 emp24/gp25L/p24 family 59.7 43 0.00093 26.6 6.3 22 199-220 179-200 (209)
121 KOG2129 Uncharacterized conser 59.5 1.3E+02 0.0028 26.8 9.8 27 1-27 188-214 (552)
122 COG5415 Predicted integral mem 59.3 66 0.0014 25.8 7.3 37 163-199 15-51 (251)
123 PF08802 CytB6-F_Fe-S: Cytochr 58.4 33 0.00072 19.6 4.9 28 188-215 5-32 (39)
124 PRK09841 cryptic autophosphory 58.3 1.8E+02 0.0038 27.9 13.4 53 36-88 274-327 (726)
125 PF10168 Nup88: Nuclear pore c 58.2 1.8E+02 0.0039 28.0 15.0 27 68-94 635-661 (717)
126 PF06459 RR_TM4-6: Ryanodine R 58.1 28 0.0006 29.2 5.4 35 183-220 160-194 (274)
127 KOG4603 TBP-1 interacting prot 58.0 87 0.0019 24.3 12.1 60 32-91 119-178 (201)
128 PHA02902 putative IMV membrane 57.6 14 0.00031 23.5 2.8 22 197-218 5-26 (70)
129 PF06696 Strep_SA_rep: Strepto 57.4 26 0.00056 18.0 4.1 22 69-90 2-23 (25)
130 PF03908 Sec20: Sec20; InterP 56.3 61 0.0013 22.0 10.6 34 141-174 28-61 (92)
131 PF00261 Tropomyosin: Tropomyo 56.3 1.1E+02 0.0023 24.9 14.9 48 130-177 185-232 (237)
132 PF10458 Val_tRNA-synt_C: Valy 55.9 51 0.0011 21.0 8.0 52 40-91 8-65 (66)
133 PF02009 Rifin_STEVOR: Rifin/s 55.6 19 0.00041 30.5 4.1 20 2-21 49-68 (299)
134 PF05957 DUF883: Bacterial pro 55.6 63 0.0014 22.0 7.7 49 7-55 2-50 (94)
135 TIGR03142 cytochro_ccmI cytoch 54.8 68 0.0015 22.9 6.5 20 200-219 95-114 (117)
136 KOG3046 Transcription factor, 54.5 83 0.0018 23.5 6.7 54 31-84 7-60 (147)
137 PF06072 Herpes_US9: Alphaherp 54.3 52 0.0011 20.7 4.8 14 180-193 9-22 (60)
138 PRK10780 periplasmic chaperone 54.2 95 0.0021 23.6 10.5 22 46-67 64-85 (165)
139 PRK09738 small toxic polypepti 54.2 7.6 0.00017 23.8 1.1 21 196-216 5-25 (52)
140 PF03302 VSP: Giardia variant- 53.9 6.6 0.00014 34.7 1.2 22 200-221 373-394 (397)
141 COG4499 Predicted membrane pro 53.8 16 0.00036 31.9 3.5 49 156-220 196-244 (434)
142 PF13800 Sigma_reg_N: Sigma fa 53.3 32 0.00068 23.6 4.3 30 188-217 3-32 (96)
143 smart00511 ORANGE Orange domai 52.5 44 0.00095 19.4 4.3 41 7-47 2-42 (45)
144 PF01102 Glycophorin_A: Glycop 52.4 21 0.00045 26.1 3.3 17 199-215 66-82 (122)
145 PHA03049 IMV membrane protein; 52.4 23 0.00049 22.8 3.1 21 198-218 5-25 (68)
146 PF13253 DUF4044: Protein of u 52.1 33 0.00072 19.1 3.4 25 193-217 7-31 (35)
147 KOG4674 Uncharacterized conser 52.0 3.3E+02 0.0072 29.2 19.2 67 127-193 397-463 (1822)
148 COG4068 Uncharacterized protei 51.9 58 0.0013 20.4 5.1 24 183-206 30-53 (64)
149 PF05399 EVI2A: Ectropic viral 51.8 21 0.00045 28.6 3.5 18 200-217 132-149 (227)
150 PF15102 TMEM154: TMEM154 prot 49.9 6.9 0.00015 29.4 0.6 7 211-217 76-82 (146)
151 KOG0933 Structural maintenance 49.7 2.8E+02 0.0062 27.8 19.0 18 157-174 851-868 (1174)
152 PF10183 ESSS: ESSS subunit of 49.4 22 0.00047 25.2 3.0 21 198-218 61-81 (105)
153 TIGR00255 conserved hypothetic 49.2 1.2E+02 0.0025 25.7 7.9 65 13-77 131-195 (291)
154 PF01627 Hpt: Hpt domain; Int 49.1 71 0.0015 20.6 9.3 61 3-63 1-66 (90)
155 PRK15422 septal ring assembly 49.0 79 0.0017 21.1 6.2 50 41-91 23-72 (79)
156 PF07889 DUF1664: Protein of u 48.9 1E+02 0.0023 22.5 11.1 55 8-62 37-94 (126)
157 PF09125 COX2-transmemb: Cytoc 48.9 45 0.00098 18.7 3.5 13 196-208 14-26 (38)
158 COG1256 FlgK Flagellar hook-as 48.7 1.6E+02 0.0034 27.4 9.2 78 13-91 110-189 (552)
159 PF09788 Tmemb_55A: Transmembr 48.5 16 0.00035 30.0 2.5 29 187-215 187-215 (256)
160 PF11460 DUF3007: Protein of u 47.7 60 0.0013 22.9 4.9 15 27-41 88-102 (104)
161 PRK10132 hypothetical protein; 47.0 1E+02 0.0022 21.9 7.1 19 7-25 16-34 (108)
162 PF03938 OmpH: Outer membrane 46.9 1.2E+02 0.0026 22.6 10.4 6 62-67 73-78 (158)
163 PRK11637 AmiB activator; Provi 46.3 2.1E+02 0.0046 25.3 20.9 82 8-90 45-128 (428)
164 KOG0612 Rho-associated, coiled 46.3 3.5E+02 0.0075 27.8 17.6 56 119-174 575-630 (1317)
165 PRK13729 conjugal transfer pil 46.0 1.2E+02 0.0025 27.6 7.6 56 35-91 68-123 (475)
166 PF07527 Hairy_orange: Hairy O 45.3 59 0.0013 18.7 5.4 42 6-47 1-42 (43)
167 TIGR03017 EpsF chain length de 45.3 2.2E+02 0.0047 25.2 18.7 29 165-193 337-365 (444)
168 PF09403 FadA: Adhesion protei 45.0 1.2E+02 0.0026 22.2 10.8 56 36-91 52-112 (126)
169 PF00804 Syntaxin: Syntaxin; 44.8 94 0.002 20.8 9.4 56 4-59 4-72 (103)
170 PHA02849 putative transmembran 44.8 39 0.00086 22.4 3.4 12 198-209 19-30 (82)
171 KOG4684 Uncharacterized conser 44.6 41 0.00088 27.0 4.1 29 186-214 198-226 (275)
172 PF15168 TRIQK: Triple QxxK/R 44.4 57 0.0012 21.6 4.1 22 199-220 53-74 (79)
173 PF00435 Spectrin: Spectrin re 44.3 91 0.002 20.5 9.6 85 5-89 3-97 (105)
174 PF02009 Rifin_STEVOR: Rifin/s 44.1 29 0.00063 29.4 3.5 15 203-217 263-277 (299)
175 PF06013 WXG100: Proteins of 1 44.1 83 0.0018 20.0 7.3 58 33-90 8-69 (86)
176 KOG3202 SNARE protein TLG1/Syn 44.0 1.8E+02 0.0039 23.8 9.0 25 160-184 184-208 (235)
177 PF11172 DUF2959: Protein of u 43.9 1.6E+02 0.0036 23.4 11.7 61 35-95 77-142 (201)
178 PF03904 DUF334: Domain of unk 43.7 1.8E+02 0.0038 23.7 10.1 26 67-92 115-140 (230)
179 PHA02902 putative IMV membrane 43.7 50 0.0011 21.1 3.6 21 201-221 6-26 (70)
180 PF02419 PsbL: PsbL protein; 43.5 52 0.0011 18.4 3.3 17 201-217 19-35 (37)
181 TIGR00606 rad50 rad50. This fa 43.1 4E+02 0.0087 27.6 18.1 21 39-59 884-904 (1311)
182 PF04639 Baculo_E56: Baculovir 43.1 11 0.00024 31.5 0.8 18 198-215 280-297 (305)
183 PF04799 Fzo_mitofusin: fzo-li 43.0 1.6E+02 0.0034 22.9 7.7 51 42-92 112-164 (171)
184 PF00505 HMG_box: HMG (high mo 42.5 82 0.0018 19.5 6.0 39 48-86 28-66 (69)
185 PF00558 Vpu: Vpu protein; In 42.2 29 0.00064 23.3 2.6 21 200-220 14-34 (81)
186 PF14235 DUF4337: Domain of un 42.2 83 0.0018 24.0 5.4 26 67-92 68-93 (157)
187 PF09011 HMG_box_2: HMG-box do 42.1 92 0.002 19.9 5.4 36 48-83 32-67 (73)
188 PRK10404 hypothetical protein; 42.0 1.2E+02 0.0026 21.2 9.4 51 165-215 47-98 (101)
189 PF15290 Syntaphilin: Golgi-lo 41.9 2.1E+02 0.0046 24.1 11.0 61 33-93 65-138 (305)
190 PF08181 DegQ: DegQ (SacQ) fam 41.8 69 0.0015 18.4 3.8 25 43-67 4-28 (46)
191 PF12998 ING: Inhibitor of gro 41.6 1.1E+02 0.0024 20.8 6.7 30 45-74 35-66 (105)
192 PF07361 Cytochrom_B562: Cytoc 41.6 1.2E+02 0.0026 21.2 6.9 22 39-60 56-77 (103)
193 PF12495 Vip3A_N: Vegetative i 41.5 1.4E+02 0.003 21.8 7.3 59 149-207 73-131 (177)
194 PRK11820 hypothetical protein; 41.3 1.8E+02 0.0039 24.5 7.8 64 14-77 130-193 (288)
195 PF02936 COX4: Cytochrome c ox 41.3 43 0.00092 25.1 3.7 25 195-219 73-97 (142)
196 MTH00158 ATP8 ATP synthase F0 41.1 60 0.0013 17.5 3.5 22 197-218 9-30 (32)
197 PTZ00046 rifin; Provisional 40.5 30 0.00066 30.0 3.1 15 2-16 69-83 (358)
198 PF06005 DUF904: Protein of un 40.0 1.1E+02 0.0023 20.1 7.4 24 38-61 6-29 (72)
199 PF07798 DUF1640: Protein of u 39.8 1.7E+02 0.0038 22.5 16.3 23 198-220 154-176 (177)
200 KOG3564 GTPase-activating prot 39.7 2.4E+02 0.0051 25.8 8.4 13 77-89 89-101 (604)
201 COG0342 SecD Preprotein transl 39.7 33 0.00071 31.4 3.4 27 194-220 341-367 (506)
202 PF13131 DUF3951: Protein of u 39.4 61 0.0013 19.7 3.4 6 211-216 19-24 (53)
203 PF06103 DUF948: Bacterial pro 39.4 1.2E+02 0.0025 20.4 7.5 31 151-181 46-76 (90)
204 PF04834 Adeno_E3_14_5: Early 39.2 34 0.00074 23.8 2.6 16 204-219 32-47 (97)
205 cd00922 Cyt_c_Oxidase_IV Cytoc 38.8 49 0.0011 24.6 3.7 23 197-219 75-97 (136)
206 TIGR03185 DNA_S_dndD DNA sulfu 38.8 3.4E+02 0.0074 25.6 10.8 55 37-91 392-447 (650)
207 PF02532 PsbI: Photosystem II 38.6 73 0.0016 17.8 3.4 17 194-210 2-18 (36)
208 PF15202 Adipogenin: Adipogeni 38.6 65 0.0014 20.8 3.6 23 198-220 17-39 (81)
209 PF11298 DUF3099: Protein of u 38.2 1.2E+02 0.0025 20.0 5.3 30 185-214 9-38 (73)
210 TIGR01477 RIFIN variant surfac 38.1 35 0.00076 29.6 3.1 14 2-15 72-85 (353)
211 PF10267 Tmemb_cc2: Predicted 38.1 2.9E+02 0.0063 24.5 15.3 171 38-219 214-392 (395)
212 PLN03094 Substrate binding sub 38.0 37 0.0008 29.7 3.3 31 188-218 77-107 (370)
213 PF06667 PspB: Phage shock pro 37.5 54 0.0012 21.7 3.3 7 211-217 16-22 (75)
214 PF07835 COX4_pro_2: Bacterial 37.5 52 0.0011 19.3 2.9 9 201-209 27-35 (44)
215 MTH00261 ATP8 ATP synthase F0 37.4 85 0.0018 19.4 3.9 27 194-220 9-35 (68)
216 PF05151 PsbM: Photosystem II 36.9 72 0.0016 17.2 3.6 14 205-218 15-28 (31)
217 PF11174 DUF2970: Protein of u 36.8 71 0.0015 19.8 3.6 22 198-219 33-54 (56)
218 PF09748 Med10: Transcription 36.8 1.3E+02 0.0028 22.0 5.6 49 42-90 2-51 (128)
219 PHA03240 envelope glycoprotein 36.7 37 0.00081 27.3 2.8 17 198-214 215-231 (258)
220 KOG1326 Membrane-associated pr 36.7 56 0.0012 32.3 4.4 34 184-217 1060-1093(1105)
221 PF11026 DUF2721: Protein of u 36.6 1.7E+02 0.0036 21.4 6.7 24 183-206 49-73 (130)
222 PF15619 Lebercilin: Ciliary p 36.2 2.2E+02 0.0047 22.5 11.0 54 38-91 91-144 (194)
223 CHL00038 psbL photosystem II p 36.0 70 0.0015 18.0 3.0 16 201-216 20-35 (38)
224 PF01848 HOK_GEF: Hok/gef fami 35.9 25 0.00054 20.6 1.3 17 199-215 3-19 (43)
225 KOG1656 Protein involved in gl 35.9 1.3E+02 0.0028 24.0 5.7 42 155-197 84-125 (221)
226 cd07625 BAR_Vps17p The Bin/Amp 35.8 2.4E+02 0.0052 23.0 9.0 30 37-66 158-187 (230)
227 KOG3443 Uncharacterized conser 35.8 2.1E+02 0.0045 22.1 8.0 51 153-203 32-82 (184)
228 PF06365 CD34_antigen: CD34/Po 35.5 21 0.00045 28.4 1.3 24 198-221 102-127 (202)
229 KOG4433 Tweety transmembrane/c 35.3 2.4E+02 0.0053 25.7 7.9 41 120-160 112-152 (526)
230 PHA02562 46 endonuclease subun 35.1 3.5E+02 0.0076 24.6 20.8 23 39-61 216-238 (562)
231 cd07668 BAR_SNX9 The Bin/Amphi 34.9 1.3E+02 0.0028 24.2 5.5 57 38-94 7-63 (210)
232 PF07926 TPR_MLP1_2: TPR/MLP1/ 34.8 1.8E+02 0.0039 21.2 11.9 19 41-59 33-51 (132)
233 PF07544 Med9: RNA polymerase 34.8 1.4E+02 0.003 19.9 6.4 57 31-92 23-79 (83)
234 KOG0161 Myosin class II heavy 34.8 6.4E+02 0.014 27.5 17.5 61 123-183 1852-1912(1930)
235 PF09577 Spore_YpjB: Sporulati 34.7 2.5E+02 0.0055 22.9 13.8 23 198-220 201-223 (232)
236 PRK10884 SH3 domain-containing 34.4 2.4E+02 0.0052 22.5 12.3 51 168-218 137-190 (206)
237 PF15339 Afaf: Acrosome format 34.3 1.3E+02 0.0027 23.4 5.2 31 190-220 129-159 (200)
238 PF13198 DUF4014: Protein of u 34.3 95 0.0021 20.3 3.9 23 189-211 9-31 (72)
239 PF04156 IncA: IncA protein; 34.3 2.2E+02 0.0047 21.9 11.0 24 69-92 127-150 (191)
240 PF06084 Cytomega_TRL10: Cytom 34.3 17 0.00038 26.0 0.6 8 210-217 74-81 (150)
241 PF07851 TMPIT: TMPIT-like pro 34.0 1.2E+02 0.0026 26.2 5.7 30 30-59 62-91 (330)
242 PF14914 LRRC37AB_C: LRRC37A/B 34.0 46 0.001 25.1 2.8 10 193-202 116-125 (154)
243 cd02677 MIT_SNX15 MIT: domain 33.9 1.4E+02 0.003 19.6 6.5 25 64-88 46-70 (75)
244 PF13396 PLDc_N: Phospholipase 33.8 26 0.00056 20.4 1.2 24 197-220 21-44 (46)
245 TIGR01069 mutS2 MutS2 family p 33.7 4.6E+02 0.0099 25.5 11.0 20 41-60 534-553 (771)
246 PF12958 DUF3847: Protein of u 33.7 1.5E+02 0.0034 20.1 5.7 46 161-206 6-54 (86)
247 COG4396 Mu-like prophage host- 33.7 2E+02 0.0044 21.5 8.0 61 44-109 26-86 (170)
248 cd07669 BAR_SNX33 The Bin/Amph 33.6 1.4E+02 0.003 24.0 5.5 57 38-94 7-63 (207)
249 PF11057 Cortexin: Cortexin of 33.6 59 0.0013 21.5 2.9 19 201-219 33-51 (81)
250 PF10151 DUF2359: Uncharacteri 33.3 1.4E+02 0.0029 27.2 6.2 42 176-217 242-283 (469)
251 TIGR03545 conserved hypothetic 33.3 3.6E+02 0.0077 25.1 9.0 22 6-27 167-188 (555)
252 PF01544 CorA: CorA-like Mg2+ 33.2 2.7E+02 0.0058 22.6 11.6 53 36-91 118-170 (292)
253 PF06394 Pepsin-I3: Pepsin inh 33.1 49 0.0011 22.0 2.5 22 71-92 45-66 (76)
254 PRK00753 psbL photosystem II r 33.1 71 0.0015 18.0 2.8 16 201-216 21-36 (39)
255 PF01299 Lamp: Lysosome-associ 32.9 32 0.00068 29.1 2.1 17 201-217 277-293 (306)
256 PF04639 Baculo_E56: Baculovir 32.7 35 0.00076 28.6 2.2 28 193-220 272-299 (305)
257 KOG0995 Centromere-associated 32.6 4.2E+02 0.009 24.7 18.2 9 183-191 384-392 (581)
258 KOG0994 Extracellular matrix g 32.5 5.8E+02 0.013 26.4 17.8 21 37-57 1462-1482(1758)
259 KOG0809 SNARE protein TLG2/Syn 32.3 48 0.001 27.9 2.9 44 165-212 255-298 (305)
260 PF15012 DUF4519: Domain of un 32.0 16 0.00034 22.7 0.0 8 210-217 44-51 (56)
261 PF10140 YukC: WXG100 protein 32.0 15 0.00033 31.9 0.0 31 191-221 189-219 (359)
262 PF14283 DUF4366: Domain of un 31.9 9.2 0.0002 30.8 -1.3 14 208-221 171-184 (218)
263 KOG0994 Extracellular matrix g 31.9 6E+02 0.013 26.3 17.3 24 38-61 1548-1571(1758)
264 PF14643 DUF4455: Domain of un 31.9 3.9E+02 0.0084 24.2 9.7 76 3-91 355-430 (473)
265 PF06143 Baculo_11_kDa: Baculo 31.4 1.2E+02 0.0027 20.5 4.3 12 176-187 23-34 (84)
266 PF04906 Tweety: Tweety; Inte 31.3 3.7E+02 0.0081 23.8 11.0 23 195-217 183-205 (406)
267 PF08317 Spc7: Spc7 kinetochor 31.2 3.3E+02 0.0072 23.2 16.5 36 56-91 200-235 (325)
268 PF02388 FemAB: FemAB family; 30.9 3E+02 0.0066 24.3 8.0 50 36-90 242-291 (406)
269 PF07240 Turandot: Stress-indu 30.9 1.5E+02 0.0032 20.2 4.6 38 43-80 7-46 (85)
270 PF06005 DUF904: Protein of un 30.9 1.6E+02 0.0034 19.3 9.6 21 1-21 1-22 (72)
271 PF10234 Cluap1: Clusterin-ass 30.7 3.2E+02 0.007 22.8 9.5 55 37-92 163-217 (267)
272 PF10661 EssA: WXG100 protein 30.5 82 0.0018 23.7 3.7 23 198-220 122-144 (145)
273 MTH00260 ATP8 ATP synthase F0 30.3 1.1E+02 0.0024 18.7 3.6 21 197-217 9-29 (53)
274 COG5052 YOP1 Protein involved 30.1 1.8E+02 0.004 22.7 5.5 38 163-201 3-40 (186)
275 TIGR03521 GldG gliding-associa 30.1 91 0.002 28.8 4.7 26 193-218 521-546 (552)
276 PF04012 PspA_IM30: PspA/IM30 30.1 2.8E+02 0.0061 21.9 13.4 23 4-26 27-49 (221)
277 cd07670 BAR_SNX18 The Bin/Amph 30.1 1.8E+02 0.0039 23.3 5.6 57 38-94 7-63 (207)
278 PF06657 Cep57_MT_bd: Centroso 29.9 1.7E+02 0.0037 19.4 6.9 28 36-63 17-44 (79)
279 PF06682 DUF1183: Protein of u 29.9 52 0.0011 28.2 2.8 10 210-219 167-176 (318)
280 PRK11281 hypothetical protein; 29.7 6.3E+02 0.014 25.9 18.8 35 155-189 291-325 (1113)
281 PRK09458 pspB phage shock prot 29.6 81 0.0017 20.9 3.1 16 202-217 7-22 (75)
282 PF09815 XK-related: XK-relate 29.6 68 0.0015 27.4 3.6 21 201-221 310-330 (332)
283 PRK09400 secE preprotein trans 29.6 1.5E+02 0.0033 18.7 4.9 27 191-217 29-55 (61)
284 KOG0933 Structural maintenance 29.3 6.1E+02 0.013 25.6 16.2 45 67-111 908-952 (1174)
285 PF12877 DUF3827: Domain of un 29.1 42 0.00091 31.5 2.3 16 151-166 226-241 (684)
286 PF11947 DUF3464: Protein of u 28.8 1.3E+02 0.0028 22.9 4.5 31 183-217 55-85 (153)
287 PF01297 TroA: Periplasmic sol 28.8 2.7E+02 0.0059 22.5 6.9 50 46-95 99-148 (256)
288 cd01145 TroA_c Periplasmic bin 28.7 2.2E+02 0.0047 22.3 6.1 50 45-94 114-163 (203)
289 PF11166 DUF2951: Protein of u 28.6 2E+02 0.0044 19.9 8.8 16 159-174 35-50 (98)
290 PF05814 DUF843: Baculovirus p 28.3 81 0.0018 21.3 3.0 22 196-217 24-45 (83)
291 KOG0810 SNARE protein Syntaxin 28.3 3.7E+02 0.0081 22.8 17.6 29 35-63 81-109 (297)
292 COG5074 t-SNARE complex subuni 28.2 3.4E+02 0.0074 22.3 17.1 28 135-162 199-226 (280)
293 PF04111 APG6: Autophagy prote 28.2 2.3E+02 0.0049 24.2 6.5 86 1-87 7-93 (314)
294 COG4839 FtsL Protein required 28.0 1.8E+02 0.0039 21.1 4.9 23 196-218 37-59 (120)
295 COG4640 Predicted membrane pro 27.7 78 0.0017 28.0 3.5 15 195-209 49-63 (465)
296 KOG1094 Discoidin domain recep 27.7 64 0.0014 30.3 3.2 20 198-217 395-414 (807)
297 PF10146 zf-C4H2: Zinc finger- 27.5 3.4E+02 0.0073 22.1 9.2 71 16-92 3-73 (230)
298 cd07685 F-BAR_Fes The F-BAR (F 27.5 3.5E+02 0.0075 22.2 11.1 10 10-19 36-45 (237)
299 PF09177 Syntaxin-6_N: Syntaxi 27.5 2.1E+02 0.0045 19.6 8.6 56 37-92 6-66 (97)
300 PF02609 Exonuc_VII_S: Exonucl 27.5 1.5E+02 0.0032 17.9 6.9 43 16-58 5-49 (53)
301 PRK10929 putative mechanosensi 27.4 6.9E+02 0.015 25.6 15.9 19 71-89 214-232 (1109)
302 PRK15058 cytochrome b562; Prov 27.2 2.6E+02 0.0056 20.6 6.5 18 5-22 80-97 (128)
303 PF15145 DUF4577: Domain of un 27.2 87 0.0019 22.4 3.1 20 198-217 62-81 (128)
304 KOG2662 Magnesium transporters 27.1 4.5E+02 0.0098 23.4 19.3 88 131-221 314-410 (414)
305 cd00928 Cyt_c_Oxidase_VIIa Cyt 27.1 1.5E+02 0.0032 18.4 3.7 26 194-219 26-51 (55)
306 PRK05729 valS valyl-tRNA synth 27.0 3.8E+02 0.0081 26.4 8.5 57 35-91 810-872 (874)
307 PF07445 priB_priC: Primosomal 26.7 3E+02 0.0065 21.2 7.3 55 40-94 113-167 (173)
308 KOG2911 Uncharacterized conser 26.7 4.7E+02 0.01 23.5 13.3 45 141-185 312-356 (439)
309 PF06363 Picorna_P3A: Picornav 26.5 1.8E+02 0.0039 20.1 4.4 38 182-219 54-92 (100)
310 PRK02913 hypothetical protein; 26.3 44 0.00096 25.2 1.6 17 190-206 38-54 (150)
311 PF04048 Sec8_exocyst: Sec8 ex 26.3 2.7E+02 0.0059 20.6 9.3 17 10-26 43-59 (142)
312 KOG0964 Structural maintenance 26.3 6.9E+02 0.015 25.2 19.2 24 34-57 263-286 (1200)
313 PRK11281 hypothetical protein; 26.1 7.2E+02 0.016 25.4 16.0 24 69-92 84-107 (1113)
314 PF02468 PsbN: Photosystem II 26.1 69 0.0015 18.8 2.0 19 201-219 9-27 (43)
315 KOG4075 Cytochrome c oxidase, 25.8 77 0.0017 24.3 2.8 32 188-219 91-122 (167)
316 PF10779 XhlA: Haemolysin XhlA 25.8 1.9E+02 0.0041 18.6 6.1 22 70-91 32-53 (71)
317 PRK04989 psbM photosystem II r 25.7 98 0.0021 17.2 2.5 9 209-217 19-27 (35)
318 PF12008 EcoR124_C: Type I res 25.6 2.2E+02 0.0048 23.2 5.9 88 3-92 5-96 (270)
319 PF13801 Metal_resist: Heavy-m 25.2 2.3E+02 0.005 19.4 8.8 22 38-59 93-114 (125)
320 PRK10856 cytoskeletal protein 25.1 53 0.0011 28.3 2.1 11 192-202 106-116 (331)
321 TIGR00327 secE_euk_arch protei 25.0 1.9E+02 0.0041 18.3 4.7 43 176-218 7-52 (61)
322 PRK14082 hypothetical protein; 24.9 2E+02 0.0042 18.5 4.3 41 7-47 6-47 (65)
323 PF14335 DUF4391: Domain of un 24.8 3.6E+02 0.0078 21.5 7.3 46 32-80 175-220 (221)
324 PF13955 Fst_toxin: Toxin Fst, 24.8 1E+02 0.0022 15.1 3.4 18 202-219 3-20 (21)
325 PF11221 Med21: Subunit 21 of 24.6 3E+02 0.0064 20.4 12.8 92 1-92 1-124 (144)
326 PF10280 Med11: Mediator compl 24.5 2.7E+02 0.0058 19.9 7.6 57 34-90 4-66 (117)
327 PF10731 Anophelin: Thrombin i 24.5 66 0.0014 20.2 1.9 9 195-203 2-10 (65)
328 PF09716 ETRAMP: Malarial earl 24.4 2.2E+02 0.0048 19.1 4.7 20 183-202 40-59 (84)
329 PTZ00464 SNF-7-like protein; P 24.4 3.7E+02 0.0081 21.5 14.9 47 143-190 102-148 (211)
330 PF10577 UPF0560: Uncharacteri 24.3 82 0.0018 30.4 3.3 20 198-217 277-296 (807)
331 PF11044 TMEMspv1-c74-12: Plec 24.2 1.6E+02 0.0035 17.3 3.6 13 207-219 17-29 (49)
332 PF03961 DUF342: Protein of un 24.1 5.2E+02 0.011 23.1 8.5 20 71-90 381-400 (451)
333 MTH00147 ATP8 ATP synthase F0 24.1 1.7E+02 0.0036 17.7 3.6 21 197-217 9-29 (51)
334 COG5416 Uncharacterized integr 24.0 1E+02 0.0022 21.5 2.9 15 200-214 28-42 (98)
335 cd07596 BAR_SNX The Bin/Amphip 24.0 3.4E+02 0.0073 20.9 10.0 18 39-56 148-165 (218)
336 PF10456 BAR_3_WASP_bdg: WASP- 23.9 2.9E+02 0.0062 22.6 6.1 60 35-94 33-92 (237)
337 PF00895 ATP-synt_8: ATP synth 23.9 1.2E+02 0.0025 18.0 3.0 11 207-217 19-29 (54)
338 PF08196 UL2: UL2 protein; In 23.9 1.8E+02 0.0039 17.7 3.8 18 204-221 39-56 (60)
339 COG3352 FlaC Putative archaeal 23.8 3.3E+02 0.0072 20.7 8.6 50 12-62 49-98 (157)
340 KOG3156 Uncharacterized membra 23.8 3.9E+02 0.0085 21.5 13.1 43 47-89 98-140 (220)
341 PF00901 Orbi_VP5: Orbivirus o 23.8 5.7E+02 0.012 23.4 15.1 15 163-177 250-264 (508)
342 COG1033 Predicted exporters of 23.7 1.7E+02 0.0037 28.2 5.3 69 144-220 525-593 (727)
343 cd02683 MIT_1 MIT: domain cont 23.6 2.2E+02 0.0048 18.7 7.2 27 64-90 46-72 (77)
344 KOG0250 DNA repair protein RAD 23.4 7.9E+02 0.017 24.9 17.7 25 37-61 317-341 (1074)
345 CHL00080 psbM photosystem II p 23.4 1.1E+02 0.0024 16.9 2.4 8 210-217 20-27 (34)
346 PF04740 LXG: LXG domain of WX 23.3 3.6E+02 0.0077 20.9 10.9 57 6-62 67-125 (204)
347 cd07626 BAR_SNX9_like The Bin/ 23.3 2.3E+02 0.005 22.5 5.3 54 41-94 2-55 (199)
348 PF13677 MotB_plug: Membrane M 23.3 1.4E+02 0.003 18.5 3.3 20 198-217 18-37 (58)
349 PF11559 ADIP: Afadin- and alp 23.3 3.1E+02 0.0068 20.2 10.2 19 72-90 108-126 (151)
350 TIGR03017 EpsF chain length de 23.3 5.2E+02 0.011 22.8 11.1 17 201-217 402-418 (444)
351 PLN02943 aminoacyl-tRNA ligase 23.0 5E+02 0.011 25.9 8.6 58 35-92 888-951 (958)
352 TIGR03038 PS_II_psbM photosyst 22.9 1.3E+02 0.0027 16.5 2.5 9 209-217 19-27 (33)
353 TIGR01477 RIFIN variant surfac 22.8 1E+02 0.0022 26.8 3.3 11 207-217 321-331 (353)
354 PHA03386 P10 fibrous body prot 22.8 1.7E+02 0.0036 20.2 3.7 26 155-180 35-60 (94)
355 PF07204 Orthoreo_P10: Orthore 22.5 71 0.0015 22.1 1.9 6 211-216 58-63 (98)
356 PRK09706 transcriptional repre 22.4 2.8E+02 0.0061 20.0 5.3 37 54-90 91-127 (135)
357 PHA03326 nuclear egress membra 22.3 84 0.0018 25.9 2.6 23 197-219 244-266 (275)
358 PF12409 P5-ATPase: P5-type AT 22.3 1.2E+02 0.0026 21.7 3.2 19 197-215 16-34 (119)
359 PF03381 CDC50: LEM3 (ligand-e 22.2 1.1E+02 0.0024 25.5 3.5 17 201-217 252-268 (278)
360 PRK07739 flgK flagellar hook-a 22.2 6.1E+02 0.013 23.2 12.0 59 32-91 139-197 (507)
361 TIGR03007 pepcterm_ChnLen poly 22.1 5.8E+02 0.013 22.9 20.2 52 37-88 169-220 (498)
362 PF12768 Rax2: Cortical protei 22.1 1.1E+02 0.0023 25.8 3.3 17 203-219 239-255 (281)
363 PF04728 LPP: Lipoprotein leuc 21.9 2.1E+02 0.0046 17.8 6.4 25 38-62 5-29 (56)
364 cd01018 ZntC Metal binding pro 21.8 3.4E+02 0.0074 22.2 6.3 51 44-94 117-167 (266)
365 KOG4484 Uncharacterized conser 21.7 3.8E+02 0.0082 20.8 5.8 39 39-82 27-65 (199)
366 PRK10772 cell division protein 21.7 1.9E+02 0.0042 20.5 4.1 28 189-217 15-43 (108)
367 KOG2736 Presenilin [Signal tra 21.7 1.2E+02 0.0026 26.6 3.5 26 195-220 71-96 (406)
368 TIGR01280 xseB exodeoxyribonuc 21.6 2.3E+02 0.005 18.1 6.5 8 19-26 10-17 (67)
369 PF06898 YqfD: Putative stage 21.6 1.4E+02 0.003 26.3 4.0 24 189-212 80-103 (385)
370 PF10198 Ada3: Histone acetylt 21.6 3.4E+02 0.0073 20.0 6.4 14 69-82 75-88 (131)
371 PF09602 PhaP_Bmeg: Polyhydrox 21.5 3.8E+02 0.0083 20.6 10.6 22 41-62 46-67 (165)
372 PRK10807 paraquat-inducible pr 21.5 6.6E+02 0.014 23.3 11.8 46 13-61 416-461 (547)
373 PF13864 Enkurin: Calmodulin-b 21.4 2.8E+02 0.0061 19.0 6.9 55 30-91 38-93 (98)
374 PF13807 GNVR: G-rich domain o 21.3 1.4E+02 0.003 19.7 3.2 13 202-214 65-77 (82)
375 PF05454 DAG1: Dystroglycan (D 21.2 32 0.00069 29.1 0.0 11 209-219 162-172 (290)
376 PF13572 DUF4134: Domain of un 21.2 1.4E+02 0.0031 20.8 3.3 23 198-220 45-67 (98)
377 PF08999 SP_C-Propep: Surfacta 21.1 2.3E+02 0.0051 19.0 4.0 19 198-216 37-55 (93)
378 PF04012 PspA_IM30: PspA/IM30 21.1 4.2E+02 0.0091 20.9 14.2 53 41-94 28-80 (221)
379 COG3190 FliO Flagellar biogene 21.0 1.7E+02 0.0036 21.9 3.7 13 207-219 36-48 (137)
380 PRK13183 psbN photosystem II r 21.0 66 0.0014 19.1 1.3 18 202-219 13-30 (46)
381 PF02238 COX7a: Cytochrome c o 20.9 2.2E+02 0.0048 17.7 3.8 23 195-217 25-47 (56)
382 PF01496 V_ATPase_I: V-type AT 20.9 3.2E+02 0.0068 26.4 6.6 54 9-63 203-256 (759)
383 PHA01782 hypothetical protein 20.9 4E+02 0.0086 20.5 6.6 65 124-203 12-77 (177)
384 PRK06665 flgK flagellar hook-a 20.8 7.2E+02 0.016 23.5 11.6 60 32-92 139-198 (627)
385 PHA03099 epidermal growth fact 20.8 79 0.0017 23.3 1.9 7 215-221 121-127 (139)
386 PF11221 Med21: Subunit 21 of 20.8 3.6E+02 0.0078 20.0 7.6 46 4-49 66-117 (144)
387 PRK14585 pgaD putative PGA bio 20.8 1.7E+02 0.0037 21.7 3.7 25 194-219 50-74 (137)
388 PF12438 DUF3679: Protein of u 20.7 92 0.002 19.4 2.0 11 198-208 2-12 (56)
389 PTZ00087 thrombosponding-relat 20.7 83 0.0018 26.3 2.3 17 202-218 305-321 (340)
390 TIGR02876 spore_yqfD sporulati 20.5 1.4E+02 0.003 26.3 3.8 25 189-213 77-101 (382)
391 COG1196 Smc Chromosome segrega 20.4 9.3E+02 0.02 24.6 18.1 189 5-195 728-916 (1163)
392 PF11820 DUF3339: Protein of u 20.3 73 0.0016 20.6 1.5 24 193-216 44-67 (68)
393 KOG0946 ER-Golgi vesicle-tethe 20.2 8.4E+02 0.018 24.1 15.0 83 9-91 617-711 (970)
394 MTH00186 ATP8 ATP synthase F0 20.2 2.1E+02 0.0045 17.1 3.6 20 198-217 10-29 (52)
395 COG4985 ABC-type phosphate tra 20.1 5E+02 0.011 21.4 8.3 21 68-88 224-244 (289)
396 PHA02662 ORF131 putative membr 20.1 1.5E+02 0.0033 23.9 3.6 21 50-70 78-98 (226)
397 COG1422 Predicted membrane pro 20.1 3.5E+02 0.0075 21.6 5.5 53 42-94 71-123 (201)
398 PF04212 MIT: MIT (microtubule 20.1 2.4E+02 0.0052 17.7 7.3 26 63-88 44-69 (69)
399 PTZ00464 SNF-7-like protein; P 20.0 4.6E+02 0.01 21.0 12.5 38 150-192 99-136 (211)
400 PF04995 CcmD: Heme exporter p 20.0 2E+02 0.0043 16.8 3.5 15 201-215 11-25 (46)
No 1
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-50 Score=310.71 Aligned_cols=220 Identities=55% Similarity=0.795 Sum_probs=209.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 027611 1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTD 80 (221)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~ 80 (221)
||+.|+.||++|+.+..+|+.+++.++..++++|...+++++..++||.+++.+|+.|++.+||+.|..|..|++.|+++
T Consensus 1 ms~~fe~yEqqy~~l~a~it~k~~~~~~~~~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksd 80 (220)
T KOG1666|consen 1 MSSLFEGYEQQYRELSAEITKKIGRALSLPGSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSD 80 (220)
T ss_pred CchHHHHHHHHHHHHHHHHHHhHHHHhcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCChhhhhHhhccCccCcccCcHHHHHHHhhhhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 81 LNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQ 160 (221)
Q Consensus 81 l~~l~~~~~~~~~~~~~~~~r~~Ll~~~~~~~~~~~~~~r~~ll~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~ 160 (221)
++.++.++++........++|+++++....|....+.+||++|+++++++++++++|.+++|.+.|||+||.+|+.+|+.
T Consensus 81 l~~l~~e~k~~~~~~~~~~~rde~~~~~~add~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~ 160 (220)
T KOG1666|consen 81 LKKLKRELKRTTSRNLNAGDRDELLEALEADDQNISADQRARLLQNTERLERSTDRLKDSQRIALETEQIGSEILEDLHG 160 (220)
T ss_pred HHHHHHHHHHhhccccccchHHHHHhhhhccccccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998844334568899988765554556789999999999999999999999999999999999999999999
Q ss_pred hhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027611 161 QRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 161 Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
||++|.+++..+.++++++++|+++++.|.||+.+|||++++||++++++|++++|+||+
T Consensus 161 QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~kf~ 220 (220)
T KOG1666|consen 161 QREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSKFT 220 (220)
T ss_pred HHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999996
No 2
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.7e-22 Score=157.15 Aligned_cols=205 Identities=17% Similarity=0.228 Sum_probs=165.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhhcch-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 027611 1 MSQVFEGYERQYCELSAGLSRKCTAASALDG-ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKT 79 (221)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~ 79 (221)
|+.+|.+-.. .+.+++..+.+++.... .+....+.+++..+.++...+..|+.-++..||+.|....-++.+.+.
T Consensus 1 m~~ly~~t~~----~~~k~q~~l~rlE~~~~~~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp~~rq~~rlr~dQl~~ 76 (213)
T KOG3251|consen 1 MDALYQSTNR----QLDKLQRGLIRLERTIKTQEVSAVENSIQRSIDQYASRCQRLDVLVSKEPPKSRQAARLRVDQLLE 76 (213)
T ss_pred CchHHHHHHH----HHHHHHHHHHHHHccccccchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHH
Confidence 6666666554 45557777777766544 677889999999999999999999999999999888777777999999
Q ss_pred HHHHHHHHHHHhhccCC----ChhhhhHhhccCccCcccCcHHHHHHHhhhhhHhhcchHHHHHHHHHHHHHHHHHHHHH
Q 027611 80 DLNNLKNEVKRVTSGNV----NQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSIL 155 (221)
Q Consensus 80 ~l~~l~~~~~~~~~~~~----~~~~r~~Ll~~~~~~~~~~~~~~r~~ll~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~ 155 (221)
++..++..+++...... ...+|.+|+++.+...++...-+.|..++.+ +.+.++++++++....|.+|+
T Consensus 77 d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~~~~~~~~~~~~~~D~el~~~-------d~l~~s~~~lDd~l~~G~~il 149 (213)
T KOG3251|consen 77 DVEHLQTSLRTSMNRNNRREQQARERVELLDRRFTNGATGTSIPFDEELQEN-------DSLKRSHNMLDDLLESGSAIL 149 (213)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCCCcchHHHHhh-------hHHHHHHhhHHHHHHHHHHHH
Confidence 99999999988766643 1456888888765432222111133334333 568889999999999999999
Q ss_pred HHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 156 QDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILY 216 (221)
Q Consensus 156 ~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~ 216 (221)
++|.+||-.|.++++++.++...|+.|+.+|+-|.||...||+|+|+.+++|++++++++|
T Consensus 150 e~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~~v~~yl~~~ 210 (213)
T KOG3251|consen 150 ENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVILTLVIMYLFYR 210 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888888877765553
No 3
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=6.4e-21 Score=148.06 Aligned_cols=203 Identities=23% Similarity=0.263 Sum_probs=163.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhhcchH-----------------HHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC
Q 027611 1 MSQVFEGYERQYCELSAGLSRKCTAASALDGE-----------------LKKQKLSEIKTGLDDADALIRKMDLEARSLQ 63 (221)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~-----------------~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~ 63 (221)
|++.|+....+.+.+..+++.+|..+.+.... .-...-.+++..|++...+.++|.. ....|
T Consensus 3 ~~s~we~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~-~~~s~ 81 (231)
T KOG3208|consen 3 SSSSWEALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMND-CASSP 81 (231)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHh-hccCC
Confidence 56899999999999999999999888532111 2245567788888888888888887 33334
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHhhccCccCc---cc-CcHHHHHHHhhhhhHhhcchHHHHH
Q 027611 64 PNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADA---MM-VSADQRGRLLMSTERLNHSTDRIKE 139 (221)
Q Consensus 64 ~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~~~~~~---~~-~~~~~r~~ll~~~~~l~~~~~~L~~ 139 (221)
++ -+.....+++|++.|.++.++|++.+..+....+|+.|++++..+. +. ++...++. +-+..++|++
T Consensus 82 a~-~aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s~~~~~~~~~~~~~~~~~e~-------~lkE~~~in~ 153 (231)
T KOG3208|consen 82 AN-SAAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERESLLESVRADISSYPSASGFNRGEM-------YLKEHDHINN 153 (231)
T ss_pred CC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccCCCchHHH-------HHHHhccccc
Confidence 33 3467899999999999999999999888766678889988765443 11 11111233 3334466888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 140 SRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAIL 212 (221)
Q Consensus 140 s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~ 212 (221)
+.++++|..++|.++.++|+.||..+.+++.++.++...+|..+.+|.+|++|..+|.+||.+||.+|+++++
T Consensus 154 s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llll 226 (231)
T KOG3208|consen 154 SIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLL 226 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999976553
No 4
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=99.59 E-value=3e-14 Score=96.72 Aligned_cols=79 Identities=38% Similarity=0.648 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 12 YCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKR 90 (221)
Q Consensus 12 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~ 90 (221)
|..+..+|..+++.+++.+|++|...+..++..|++|+++|++|+.|++++|++.|..|..+++.|+.+++.++++|++
T Consensus 1 f~~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~~ 79 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELKK 79 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6788999999999999888899999999999999999999999999999999999999999999999999999999864
No 5
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=99.52 E-value=5.1e-14 Score=92.26 Aligned_cols=65 Identities=38% Similarity=0.605 Sum_probs=61.2
Q ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHH
Q 027611 129 RLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRM 193 (221)
Q Consensus 129 ~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~ 193 (221)
.+.+++++|++|.++++|++++|.+|+.+|..||++|.++++++.++++.++.|+++|+.|.||.
T Consensus 2 ~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~ 66 (66)
T PF12352_consen 2 RLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK 66 (66)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence 45667788999999999999999999999999999999999999999999999999999999984
No 6
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=99.44 E-value=2.3e-12 Score=89.91 Aligned_cols=87 Identities=22% Similarity=0.370 Sum_probs=81.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 132 HSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAI 211 (221)
Q Consensus 132 ~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i 211 (221)
+.+..|.++++++.+..+.|..+++.|..|+++|..+++...++.+.+..|+++++.+.|+..+||+++++.++++++++
T Consensus 5 ~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v 84 (92)
T PF03908_consen 5 DVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVV 84 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHH
Q 027611 212 LLILYFK 218 (221)
Q Consensus 212 ~~vl~~k 218 (221)
++|+|.+
T Consensus 85 ~yI~~rR 91 (92)
T PF03908_consen 85 LYILWRR 91 (92)
T ss_pred HHHhhhc
Confidence 8888765
No 7
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=8.6e-06 Score=65.78 Aligned_cols=180 Identities=17% Similarity=0.186 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhcch------HHHHHHHH-HHHhhHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHH
Q 027611 9 ERQYCELSAGLSRKCTAASALDG------ELKKQKLS-EIKTGLDDADALIRKMDLEARS--LQPNVKAMLLSKLREYKT 79 (221)
Q Consensus 9 e~e~~~~~~~i~~~l~~~~~~~~------~~~~~~~~-~~~~~l~ea~~~l~~m~~E~~~--~~~~~r~~~~~k~~~~~~ 79 (221)
..+...+.+.+...+.+.....+ ++....++ .++..++.++..+.-++.-... +|..+-..=...+.+.+.
T Consensus 12 ~~e~~k~~~~~~~~~~r~~~~~~~~~~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide~El~~R~~~i~~lr~ 91 (235)
T KOG3202|consen 12 KNETLKLSEEIQGLYQRRSELLKDTGSDAEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDEFELSRRRRFIDNLRT 91 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcHHHHHHHHHHHHHHHH
Confidence 34888888888888888743322 12333333 4444444444444433332221 121111222455677778
Q ss_pred HHHHHHHHHHHhhccCCChhhhhHhhccCccCc----c---cCcH-HHHHHHhhhhhHhhcchHHHHHHHHHHHHHHHHH
Q 027611 80 DLNNLKNEVKRVTSGNVNQAARDELLESGMADA----M---MVSA-DQRGRLLMSTERLNHSTDRIKESRRTMLETEELG 151 (221)
Q Consensus 80 ~l~~l~~~~~~~~~~~~~~~~r~~Ll~~~~~~~----~---~~~~-~~r~~ll~~~~~l~~~~~~L~~s~~~~~ete~~g 151 (221)
.+..++..|....... ...|..|++....++ + ++.+ -+... ...+..+..+...|+.....+.-..++|
T Consensus 92 q~~~~~~~~~~~~~~~--~~~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~-~~qqqm~~eQDe~Ld~ls~ti~rlk~~a 168 (235)
T KOG3202|consen 92 QLRQMKSKMAMSGFAN--SNIRDILLGPEKSPNLDEAMSRASGLDNVQEIV-QLQQQMLQEQDEGLDGLSATVQRLKGMA 168 (235)
T ss_pred HHHHHHHHHHhhcccc--ccchhhhcCCCCCCchhhhHHHhhccCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887733221 123777776533221 0 1111 11111 1223456677788888899999999999
Q ss_pred HHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHH
Q 027611 152 VSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSR 191 (221)
Q Consensus 152 ~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~r 191 (221)
..+-++|..|..-|......++.+.+.+.+..+-+..|.+
T Consensus 169 ~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~ 208 (235)
T KOG3202|consen 169 LAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR 208 (235)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999
No 8
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=98.27 E-value=0.0002 Score=59.04 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 027611 138 KESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISV-LVFAILLILY 216 (221)
Q Consensus 138 ~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~-l~~~i~~vl~ 216 (221)
++.-.++....+.+......|......|.++...++.-...++.+..-++.+.++-.. |++|++|++ +++.|+.|+|
T Consensus 170 ~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~--~~~~~~i~~v~~~Fi~mvl~ 247 (251)
T PF09753_consen 170 EEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG--CWTWLMIFVVIIVFIMMVLF 247 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666777778889999999999999999999999999888888766555 666654443 4444445555
Q ss_pred HHhc
Q 027611 217 FKLT 220 (221)
Q Consensus 217 ~k~~ 220 (221)
.|+|
T Consensus 248 iri~ 251 (251)
T PF09753_consen 248 IRIF 251 (251)
T ss_pred heeC
Confidence 5654
No 9
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.0019 Score=53.18 Aligned_cols=74 Identities=18% Similarity=0.320 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLV 208 (221)
Q Consensus 135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~ 208 (221)
..+.++.....|.-+|=.++..-...|.|.+.+++++|++++-+++.|.+.|-+.--|+..|+|+++=|+++++
T Consensus 227 ~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~i 300 (311)
T KOG0812|consen 227 KTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILI 300 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 44666666677777777788888889999999999999999999999999999999999999999986655543
No 10
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=98.01 E-value=0.00027 Score=48.72 Aligned_cols=86 Identities=19% Similarity=0.309 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 134 TDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILL 213 (221)
Q Consensus 134 ~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~ 213 (221)
.+.+...+..++++.++-.+-+..+-...+.|.....+..++...-..=.+--+.+.|++.-.++-++++++++++++++
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~ 81 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIIL 81 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhh
Confidence 35678889999999999999999999999999999999999999888888888999999998888888777777777776
Q ss_pred HHHHHh
Q 027611 214 ILYFKL 219 (221)
Q Consensus 214 vl~~k~ 219 (221)
++++-+
T Consensus 82 ~i~~~~ 87 (89)
T PF00957_consen 82 IIIIVI 87 (89)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 666543
No 11
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.008 Score=50.58 Aligned_cols=81 Identities=15% Similarity=0.261 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILT---AMSRRMSRDKWIMGSIISVLVFAI 211 (221)
Q Consensus 135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~---~m~rr~~~dk~il~~ii~~l~~~i 211 (221)
+.+.+..+.+.|..++=.....-...|.|.+.++..+|....+.+..|..-++ ...++..+.|||.+++++++++++
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~ 285 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVL 285 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHH
Confidence 33556666677777777777777889999999999999999999999987777 777777777777665555544444
Q ss_pred HHHH
Q 027611 212 LLIL 215 (221)
Q Consensus 212 ~~vl 215 (221)
++++
T Consensus 286 v~~i 289 (297)
T KOG0810|consen 286 VVVI 289 (297)
T ss_pred hhhh
Confidence 4333
No 12
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.0046 Score=51.14 Aligned_cols=193 Identities=13% Similarity=0.138 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc---------c-hHHHHHHHHH----HHhhHHHHHHHHHHHHHHHhcCChhHHHHH
Q 027611 5 FEGYERQYCELSAGLSRKCTAASAL---------D-GELKKQKLSE----IKTGLDDADALIRKMDLEARSLQPNVKAML 70 (221)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~~~~---------~-~~~~~~~~~~----~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~ 70 (221)
|-+-.+|+..++..+.++++.+.+. + +.+....++. +...|..++..+.....-.+..||+.+.-.
T Consensus 59 wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~~~~ 138 (305)
T KOG0809|consen 59 WVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSERLLR 138 (305)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 4455677777777777777766321 1 1111222222 223333444444433333333456665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCC----hhhh-hHhhcc----Ccc--Ccc-cCcHHHHHHHh--hhhh-HhhcchH
Q 027611 71 LSKLREYKTDLNNLKNEVKRVTSGNVN----QAAR-DELLES----GMA--DAM-MVSADQRGRLL--MSTE-RLNHSTD 135 (221)
Q Consensus 71 ~~k~~~~~~~l~~l~~~~~~~~~~~~~----~~~r-~~Ll~~----~~~--~~~-~~~~~~r~~ll--~~~~-~l~~~~~ 135 (221)
.+-...+-..+..+..+|+..+..+-. ..++ .+.+.+ .+. +.. +...-+.++++ .+++ ....-..
T Consensus 139 ~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~~~~~~erE~ 218 (305)
T KOG0809|consen 139 KNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDRTFQEQQLMLFENNEEVVREREK 218 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhhhhHHHHHHHHHhcchHHHHHHHH
Confidence 566667777777787888777665411 0111 122211 000 000 01112223332 1111 1111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 027611 136 RIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDK 197 (221)
Q Consensus 136 ~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk 197 (221)
.+......+.|..++=.+.-.-...|.-.+.+++-++..+.-.+..|.+-+.+..+-..+++
T Consensus 219 EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~ 280 (305)
T KOG0809|consen 219 EVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNK 280 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCC
Confidence 23444444555555556655666799999999999999999999999999999888777776
No 13
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=97.75 E-value=0.014 Score=46.75 Aligned_cols=80 Identities=16% Similarity=0.265 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSK----KILTAMSRRMSRDKWIMGSIISVLVFA 210 (221)
Q Consensus 135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~----~li~~m~rr~~~dk~il~~ii~~l~~~ 210 (221)
.-|....+++.|..++=+.+-+....|.+....+.+.+.+...++..+. +-++. .|..+.+||+.|+|+++.+++
T Consensus 185 ~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avks-aRaaRkkki~c~gI~~iii~v 263 (280)
T COG5074 185 QEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKS-ARAARKKKIRCYGICFIIIIV 263 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHH-HHHHHhcceehhhhHHHHHHH
Confidence 3477788889999999999888999999999999999999888887765 55666 788888998888776666555
Q ss_pred HHHHH
Q 027611 211 ILLIL 215 (221)
Q Consensus 211 i~~vl 215 (221)
|++|+
T Consensus 264 iv~vv 268 (280)
T COG5074 264 IVVVV 268 (280)
T ss_pred HHHHH
Confidence 55554
No 14
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.0018 Score=46.28 Aligned_cols=83 Identities=13% Similarity=0.286 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 134 TDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS----KSKKILTAMSRRMSRDKWIMGSIISVLVF 209 (221)
Q Consensus 134 ~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~----~a~~li~~m~rr~~~dk~il~~ii~~l~~ 209 (221)
++.+.+++..++|+.+|-.+-.+..-+--++|....++.+.+...-. .|.++=++|-.+-++-++|++++++++++
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~ 107 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV 107 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999988888888877888888887777655543 45566677777777888888777777766
Q ss_pred HHHHHHH
Q 027611 210 AILLILY 216 (221)
Q Consensus 210 ~i~~vl~ 216 (221)
+|++.+|
T Consensus 108 iiii~~~ 114 (116)
T KOG0860|consen 108 VIIIYIF 114 (116)
T ss_pred HHHHHHh
Confidence 6655554
No 15
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.057 Score=44.78 Aligned_cols=87 Identities=14% Similarity=0.143 Sum_probs=65.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 027611 133 STDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMS---RRMSRDKWIMGSIISVLVF 209 (221)
Q Consensus 133 ~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~---rr~~~dk~il~~ii~~l~~ 209 (221)
-.+.+.+..+-+.|..+|=.+...-.+.|.+.+..+..++..+..++..|+.-+++=. ++...-+||+.+|++++++
T Consensus 178 R~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v~~~v~l 257 (269)
T KOG0811|consen 178 REQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLVGGPVGL 257 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHH
Confidence 3455667777777777777777777889999999999999999999999997776543 3344444666666666777
Q ss_pred HHHHHHHHHh
Q 027611 210 AILLILYFKL 219 (221)
Q Consensus 210 ~i~~vl~~k~ 219 (221)
++++++|..+
T Consensus 258 ii~l~i~~~~ 267 (269)
T KOG0811|consen 258 IIGLIIAGIA 267 (269)
T ss_pred HHHHHHHHhh
Confidence 7777777654
No 16
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.074 Score=42.16 Aligned_cols=144 Identities=18% Similarity=0.190 Sum_probs=76.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHhcCChhHH--HHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHhhccCccCcccCcH
Q 027611 40 EIKTGLDDADALIRKMDLEARSLQPNVK--AMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSA 117 (221)
Q Consensus 40 ~~~~~l~ea~~~l~~m~~E~~~~~~~~r--~~~~~k~~~~~~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~~~~~~~~~~~ 117 (221)
.+..+|.+++..++.+..|++..| +.+ ...... -...+..+=. ......|.-|+.+
T Consensus 69 ~~~~KlR~yksdl~~l~~e~k~~~-~~~~~~~~rde------~~~~~~add~-----~~~~dQR~rLl~n---------- 126 (220)
T KOG1666|consen 69 SYLSKLREYKSDLKKLKRELKRTT-SRNLNAGDRDE------LLEALEADDQ-----NISADQRARLLQN---------- 126 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-ccccccchHHH------HHhhhhcccc-----ccchhHHHHHHhh----------
Confidence 456667777777777777777766 110 000000 0111111100 0012356777754
Q ss_pred HHHHHHhhhhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHH-HHHHHHHH
Q 027611 118 DQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTA-MSRRMSRD 196 (221)
Q Consensus 118 ~~r~~ll~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~-m~rr~~~d 196 (221)
.++|-+.++++.++..-..++..+..+..+==..=-+.|..-|+.|..++.++..-...|.. ..++ +..+....
T Consensus 127 --TerLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~t---M~RR~~~nk~~~~ 201 (220)
T KOG1666|consen 127 --TERLERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTT---MTRRLIRNKFTLT 201 (220)
T ss_pred --hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHH---HHHHHHHHHHHHH
Confidence 12334455556666566666666666665533344667777788888888887776655543 2333 34455555
Q ss_pred HHHHHHHHHHHHHH
Q 027611 197 KWIMGSIISVLVFA 210 (221)
Q Consensus 197 k~il~~ii~~l~~~ 210 (221)
-+|++.+++++++.
T Consensus 202 aii~~l~~~il~il 215 (220)
T KOG1666|consen 202 AIIALLVLAILLIL 215 (220)
T ss_pred HHHHHHHHHHHHHH
Confidence 56665555555544
No 17
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.002 Score=45.86 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 136 RIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLIL 215 (221)
Q Consensus 136 ~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl 215 (221)
.++.-..-+--...+.-+|..+...|..-|.++++.++.+.+-|+.+=.-++.|.|+ -.-++..|.+++++++.+++++
T Consensus 37 ~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-sg~~l~~~m~~f~lV~~fi~~~ 115 (118)
T KOG3385|consen 37 AAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-SGISLLCWMAVFSLVAFFILWV 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHhhe
Confidence 344445555566677888888889999999999999999999999999999999999 4445555555555554443333
No 18
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.083 Score=44.28 Aligned_cols=86 Identities=17% Similarity=0.291 Sum_probs=76.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 132 HSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAI 211 (221)
Q Consensus 132 ~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i 211 (221)
...+-...+.+.+.|...+-.-..+.+-.|-..|..+.+...++..++..+|.-|++..+.-...+.++.+.+++|.+++
T Consensus 229 ~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf~l 308 (316)
T KOG3894|consen 229 ELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSFSL 308 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 33455777888899999999999999999999999999999999999999999999999998888888888888888888
Q ss_pred HHHHHH
Q 027611 212 LLILYF 217 (221)
Q Consensus 212 ~~vl~~ 217 (221)
.|+-||
T Consensus 309 LFldwy 314 (316)
T KOG3894|consen 309 LFLDWY 314 (316)
T ss_pred HHHhhc
Confidence 888876
No 19
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=97.06 E-value=0.13 Score=42.34 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 134 TDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTA-MSRRMSRDKWIMGSIISVLVFAIL 212 (221)
Q Consensus 134 ~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~-m~rr~~~dk~il~~ii~~l~~~i~ 212 (221)
...+.+..+-+.|..+|=.+.-.-...|.+.+.+++-++..+..++..|++-+.+ +.-+..+.||-+|+.+++|+++.+
T Consensus 194 ~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~vv~lf 273 (283)
T COG5325 194 DEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVVLLF 273 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHHHHHH
Confidence 3557777777888887777777777899999999999999999999999976655 555678899999988888888888
Q ss_pred HHHHHHhc
Q 027611 213 LILYFKLT 220 (221)
Q Consensus 213 ~vl~~k~~ 220 (221)
+.+..|..
T Consensus 274 v~l~~kl~ 281 (283)
T COG5325 274 VSLIKKLR 281 (283)
T ss_pred HHHHHHhc
Confidence 77776654
No 20
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.0024 Score=52.92 Aligned_cols=63 Identities=17% Similarity=0.234 Sum_probs=56.9
Q ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHH
Q 027611 129 RLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSR 191 (221)
Q Consensus 129 ~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~r 191 (221)
.-..+..+-.++..++.|++..|..++..|..|+++|.++...++.+...+..+.+.++.+..
T Consensus 73 ~~~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~ 135 (273)
T KOG3065|consen 73 TAQESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKG 135 (273)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 344566777888899999999999999999999999999999999999999999999988764
No 21
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=97.02 E-value=0.0038 Score=39.90 Aligned_cols=60 Identities=15% Similarity=0.252 Sum_probs=53.5
Q ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHH
Q 027611 129 RLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTA 188 (221)
Q Consensus 129 ~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~ 188 (221)
.+......|.+....+.++.++|..+...+..|.+.|.++..+++.+...+..+.+-+++
T Consensus 6 ~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~ 65 (66)
T smart00397 6 MEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 455566779999999999999999999999999999999999999999999999876553
No 22
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=96.33 E-value=0.046 Score=34.74 Aligned_cols=58 Identities=16% Similarity=0.279 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHH
Q 027611 135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRR 192 (221)
Q Consensus 135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr 192 (221)
+.|......+.+..+++.++-..+..|.+.|.++..+++.+...+..+.+-+....++
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~ 61 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577788889999999999999999999999999999999999999999888887765
No 23
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=96.18 E-value=0.44 Score=38.09 Aligned_cols=76 Identities=12% Similarity=0.140 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027611 146 ETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR 221 (221)
Q Consensus 146 ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~k~~~ 221 (221)
-...-+.+.-..|...++++..+-..++.-...|+..+.=+.+....-.-+.+.+..||++|+..|+.|++.+||.
T Consensus 166 slKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sFVsMiliiqifk 241 (244)
T KOG2678|consen 166 SLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSFVSMILIIQIFK 241 (244)
T ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455556678899999999999999999999999888888888877777777778888888888888888873
No 24
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=96.05 E-value=0.06 Score=34.72 Aligned_cols=57 Identities=14% Similarity=0.286 Sum_probs=42.0
Q ss_pred hHHHhhcchhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027611 164 SLLHAHNTLHGVDDNISKSK-KILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 164 ~l~~~~~~~~~i~~~l~~a~-~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
....+.++++.++..+.-++ .+..++.++.-+|--|+|++++-+++.+++++..+.|
T Consensus 13 ~~~~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~v~Glii~~~~~~l~~~~ 70 (70)
T PF04210_consen 13 DFNEIMKRLDEIEEKVEFTNAEIAQRAGKKIGRDIGILYGLVIGLIIFIIYIVLSSMF 70 (70)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44566677777777777666 4567889999999999998887777666666655543
No 25
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=95.77 E-value=0.093 Score=34.65 Aligned_cols=57 Identities=12% Similarity=0.333 Sum_probs=42.6
Q ss_pred hHHHhhcchhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027611 164 SLLHAHNTLHGVDDNISKSK-KILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 164 ~l~~~~~~~~~i~~~l~~a~-~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
-...+.+++++++..+.-++ .+..++.++.-+|=-|+|++++-+++.++++.+..++
T Consensus 16 d~~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~viGlli~~i~~~~~~~~ 73 (77)
T PRK01026 16 DFKEIQKRLDEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLVIGLLIVLVYIILSPIF 73 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777788887777776 4567889999999999998887777666666665543
No 26
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=95.74 E-value=0.079 Score=34.10 Aligned_cols=54 Identities=15% Similarity=0.333 Sum_probs=35.1
Q ss_pred HhhcchhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027611 167 HAHNTLHGVDDNISKSK-KILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 167 ~~~~~~~~i~~~l~~a~-~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
.+++++++++..+.-.+ .+-..+.++.-+|--|+|++++-++++.+.++..+.|
T Consensus 19 e~~kRLdeieekvef~~~Ev~Qr~GkkiGRDIGILYGlVIGlil~~i~~~l~~~~ 73 (75)
T COG4064 19 EIHKRLDEIEEKVEFVNGEVYQRIGKKIGRDIGILYGLVIGLILCMIYILLGVAF 73 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444 3457889999999999998766666555555555444
No 27
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=95.59 E-value=0.13 Score=33.09 Aligned_cols=56 Identities=13% Similarity=0.313 Sum_probs=40.4
Q ss_pred hHHHhhcchhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 164 SLLHAHNTLHGVDDNISKSK-KILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKL 219 (221)
Q Consensus 164 ~l~~~~~~~~~i~~~l~~a~-~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~k~ 219 (221)
-...+.+++++++..+.-++ .+..+..++.-+|--|+|++++-+++.+++...+.+
T Consensus 13 d~~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~viGlli~~~~~~l~~~ 69 (70)
T TIGR01149 13 EFNEVMKRLDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVIGLILFLIYILLSSM 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556667777777777666 466788999999999999877777666655555544
No 28
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=95.12 E-value=0.6 Score=31.86 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=40.2
Q ss_pred HHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 155 LQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLIL 215 (221)
Q Consensus 155 ~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl 215 (221)
++.|..+.+.|...-.... ..|.++=+.|-.+-++-.+|+++++++++++|++++
T Consensus 33 L~~L~~kt~~L~~~a~~F~------k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i~~~~ 87 (89)
T PF00957_consen 33 LEELEDKTEELSDNAKQFK------KNAKKLKRKMWWRNYKLYIIIIIIVIIIILIIIIVI 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHH
Confidence 5566677777666555554 366677788888999999999888888877777654
No 29
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=95.00 E-value=0.18 Score=31.30 Aligned_cols=53 Identities=13% Similarity=0.262 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHH
Q 027611 135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILT 187 (221)
Q Consensus 135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~ 187 (221)
..|......+.+..+++..+...+..|.+.|.++..+++.+...+..+.+-+.
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ 58 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLK 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777788888999999999999999999999999999999999999986554
No 30
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.73 E-value=0.94 Score=36.20 Aligned_cols=62 Identities=18% Similarity=0.271 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 151 GVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLIL 215 (221)
Q Consensus 151 g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl 215 (221)
..+...+|..+.+.| ...+..+...+.....-+....+....+.|+..++++++.+++++|+
T Consensus 130 ~~~~~~~L~~~n~~L---~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlil 191 (206)
T PRK10884 130 SDSVINGLKEENQKL---KNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLL 191 (206)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 334444566666655 33444455555555555666666666555555555555555555554
No 31
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=94.49 E-value=2.4 Score=35.14 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 027611 5 FEGYERQYCELSAGLSRKCTAAS 27 (221)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~~ 27 (221)
....+.++..+..++........
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~ 76 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQ 76 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777766666665553
No 32
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=93.86 E-value=0.22 Score=31.38 Aligned_cols=33 Identities=12% Similarity=0.334 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 184 KILTAMSRRMSRDKWIMGSIISVLVFAILLILY 216 (221)
Q Consensus 184 ~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~ 216 (221)
....+-.+|+.+-++|+++++++++++++++.|
T Consensus 26 ~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~~~ 58 (59)
T PF09889_consen 26 EEYRKRQKRMRKTQYIFFGIFILFLAVWIFMTF 58 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556677777788888877776655555443
No 33
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=92.95 E-value=9.4 Score=36.95 Aligned_cols=88 Identities=16% Similarity=0.323 Sum_probs=44.6
Q ss_pred hhcchHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHhHHHhhcchhhh--------hhhHHHHHHHHHHHHHHHHHHHHHH
Q 027611 130 LNHSTDRIKESRRTM-LETEELGVSILQDLHQQRQSLLHAHNTLHGV--------DDNISKSKKILTAMSRRMSRDKWIM 200 (221)
Q Consensus 130 l~~~~~~L~~s~~~~-~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i--------~~~l~~a~~li~~m~rr~~~dk~il 200 (221)
..++...+++.-..+ .+|..+-..+...|...++.+...-+.+... ..+...+-+-......+--..+|+.
T Consensus 337 v~~~~~~~~~ip~~v~~qt~~~v~~ik~~l~~~~~~i~~~a~~i~~~~~~~~s~~~~~~~~~~~~~~~~~~~y~~yR~~~ 416 (806)
T PF05478_consen 337 VQEGNSRFNDIPEKVQNQTSDVVPPIKRDLDSIGKQIRSQAKQIPNQIDSNISDILNNTERSSRSFEDEYEKYDSYRWIV 416 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 344555555544433 3555566666666666666666555555443 1111111111122234555667777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027611 201 GSIISVLVFAILLILYF 217 (221)
Q Consensus 201 ~~ii~~l~~~i~~vl~~ 217 (221)
.+++.+++++|++++++
T Consensus 417 ~lil~~~llLIv~~~~l 433 (806)
T PF05478_consen 417 GLILCCVLLLIVLCLLL 433 (806)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666555555544
No 34
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=92.25 E-value=0.22 Score=30.81 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 184 KILTAMSRRMSRDKWIMGSIISVLVFAILLIL 215 (221)
Q Consensus 184 ~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl 215 (221)
+..+.+-+|..+||..+++++++++++++.++
T Consensus 3 s~~~~~~~~f~~nk~a~~gl~il~~~vl~ai~ 34 (56)
T PF12911_consen 3 SPWKDAWRRFRRNKLAVIGLIILLILVLLAIF 34 (56)
T ss_pred CHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 34578889999999999887777666665544
No 35
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.38 E-value=1.5 Score=34.54 Aligned_cols=84 Identities=6% Similarity=0.102 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 134 TDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILL 213 (221)
Q Consensus 134 ~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~ 213 (221)
.+.|.+.+..+.|...+..+-.+.+-.-.|.|+=--++...+.++-..=++.-+++.|.++-..+=+.++++++++.+++
T Consensus 124 id~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iy 203 (217)
T KOG0859|consen 124 ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIY 203 (217)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHH
Confidence 45688889999999999999888888888888888888877777776666666777766665555555555554444444
Q ss_pred HHHH
Q 027611 214 ILYF 217 (221)
Q Consensus 214 vl~~ 217 (221)
|++.
T Consensus 204 iiv~ 207 (217)
T KOG0859|consen 204 IIVA 207 (217)
T ss_pred HHHH
Confidence 5444
No 36
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=90.17 E-value=15 Score=33.92 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCh--hHHHHHHHHHHHHHHHHHHHH
Q 027611 8 YERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQP--NVKAMLLSKLREYKTDLNNLK 85 (221)
Q Consensus 8 ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~--~~r~~~~~k~~~~~~~l~~l~ 85 (221)
.++++..+-+++...+..+..++.++-...+..+.. +++.++..|+.|+..-+. ...+.+...+...+...+.+.
T Consensus 250 i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~---~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~ 326 (560)
T PF06160_consen 250 IEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEE---RIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELK 326 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544443333333333 334455566666654332 223345566666677777777
Q ss_pred HHHHHhhccC
Q 027611 86 NEVKRVTSGN 95 (221)
Q Consensus 86 ~~~~~~~~~~ 95 (221)
.++.++..++
T Consensus 327 ~e~~~v~~sY 336 (560)
T PF06160_consen 327 EELERVSQSY 336 (560)
T ss_pred HHHHHHHHhc
Confidence 7777776665
No 37
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=89.82 E-value=16 Score=33.73 Aligned_cols=88 Identities=18% Similarity=0.233 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhc--chHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 027611 4 VFEGYERQYCELSAGLSRKCTAASAL--DGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDL 81 (221)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l 81 (221)
.+.++.+++..+..........+... +-..-...+.++...|.+++.-...|...+.+++.... ..+.++..++..+
T Consensus 345 ~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~-~Ar~~l~~~~~~l 423 (560)
T PF06160_consen 345 IVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEK-EAREKLQKLKQKL 423 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 34555556666555555555555321 22334455666666666666666666666666665543 4567777777777
Q ss_pred HHHHHHHHHhh
Q 027611 82 NNLKNEVKRVT 92 (221)
Q Consensus 82 ~~l~~~~~~~~ 92 (221)
...++.+.+..
T Consensus 424 ~~ikR~lek~n 434 (560)
T PF06160_consen 424 REIKRRLEKSN 434 (560)
T ss_pred HHHHHHHHHcC
Confidence 77777776543
No 38
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=89.76 E-value=1.5 Score=27.64 Aligned_cols=34 Identities=6% Similarity=0.206 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027611 187 TAMSRRMSRDKWIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 187 ~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
....++..+.+-..++.++++++++++++|..||
T Consensus 26 ~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~~~~ 59 (59)
T PF09889_consen 26 EEYRKRQKRMRKTQYIFFGIFILFLAVWIFMTFF 59 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3566777777778899999999999999988876
No 39
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.58 E-value=6.4 Score=31.50 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 027611 135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWI 199 (221)
Q Consensus 135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~i 199 (221)
.-+..-...+.++..+.+..++++-.-.+.|......-.+....-..-.+..+.|.++.+-+++-
T Consensus 134 ~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~a 198 (216)
T KOG0862|consen 134 RNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYA 198 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34555566666677777777777777667776666666555555556667778888888877766
No 40
>PHA03240 envelope glycoprotein M; Provisional
Probab=86.66 E-value=0.72 Score=36.71 Aligned_cols=21 Identities=19% Similarity=0.705 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027611 199 IMGSIISVLVFAILLILYFKL 219 (221)
Q Consensus 199 il~~ii~~l~~~i~~vl~~k~ 219 (221)
++|++|++++++|++++|+||
T Consensus 213 ~~WIiilIIiIiIIIL~cfKi 233 (258)
T PHA03240 213 IAWIFIAIIIIIVIILFFFKI 233 (258)
T ss_pred HhHHHHHHHHHHHHHHHHHhc
Confidence 456666666666666677665
No 41
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=86.65 E-value=7.7 Score=26.36 Aligned_cols=58 Identities=21% Similarity=0.345 Sum_probs=44.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027611 37 KLSEIKTGLDDADALIRKMDLEARS--LQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (221)
Q Consensus 37 ~~~~~~~~l~ea~~~l~~m~~E~~~--~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~ 94 (221)
.+..++..+.++..-++.++.-++. +||..|..+.......++.+..+.+++..+...
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 3556777788888888888777765 677788888888888888888888888877643
No 42
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.45 E-value=3.6 Score=34.35 Aligned_cols=59 Identities=8% Similarity=0.209 Sum_probs=51.9
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHH
Q 027611 131 NHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAM 189 (221)
Q Consensus 131 ~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m 189 (221)
+....-|.+...++.....+|.+.-.+|..|.+.|.++..+++..+..+..+++=++.+
T Consensus 214 deiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kL 272 (273)
T KOG3065|consen 214 DEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKL 272 (273)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhc
Confidence 34556688899999999999999999999999999999999999999999998766543
No 43
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=85.30 E-value=3.3 Score=24.36 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 189 MSRRMSRDKWIMGSIISVLVFAILLILY 216 (221)
Q Consensus 189 m~rr~~~dk~il~~ii~~l~~~i~~vl~ 216 (221)
=.|+..++-++=+..|++|++.|++++.
T Consensus 23 qar~~lq~lfvnf~lilicllli~iivm 50 (52)
T TIGR01294 23 QARQNLQNLFINFCLILICLLLICIIVM 50 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666767777777777777766653
No 44
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=83.11 E-value=25 Score=29.04 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhh
Q 027611 4 VFEGYERQYCELSAGLSRKCTAAS 27 (221)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~~ 27 (221)
.+..++.++..+..++.....+..
T Consensus 46 ~~~~~e~~l~~L~~d~~~L~~k~~ 69 (264)
T PF06008_consen 46 QLDPLEKELESLEQDVENLQEKAT 69 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777666654
No 45
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.04 E-value=23 Score=28.54 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 027611 4 VFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNN 83 (221)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~ 83 (221)
-|.+.+.|++.+++++....+.+..+.+.+ +.-..+-..|..=.+.+..+.-|.+..-.+. ..++++..-+..
T Consensus 52 s~ks~~~eie~LLeql~~vndsm~~~~~s~--a~~aa~~htL~RHrEILqdy~qef~rir~n~-----~a~~e~~~Ll~s 124 (231)
T KOG3208|consen 52 SFKSLENEIEGLLEQLQDVNDSMNDCASSP--ANSAAVMHTLQRHREILQDYTQEFRRIRSNI-----DAKRERESLLES 124 (231)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhccCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 588889999999999888888775511100 0011244556666666666666666433321 111111111222
Q ss_pred HHHHHHHhhccCCChhhhhHhhccCccCcccCcHHHHHHHhhhhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 027611 84 LKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQ 163 (221)
Q Consensus 84 l~~~~~~~~~~~~~~~~r~~Ll~~~~~~~~~~~~~~r~~ll~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre 163 (221)
.+...... ...++ + ....+=++ ++..+++.+..+++-..+|.+|.+.-..=...|..=..
T Consensus 125 ~~~~~~~~-----------~~~~~-~---~~~e~~lk-----E~~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~ 184 (231)
T KOG3208|consen 125 VRADISSY-----------PSASG-F---NRGEMYLK-----EHDHINNSIRLVDELISQAQATRENLHSQRSVLGGINN 184 (231)
T ss_pred HhhhhccC-----------CccCC-C---chHHHHHH-----HhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 22222111 11111 0 00011111 12345555556666677777777766666667777778
Q ss_pred hHHHhhcchhhhhhhHHHHH
Q 027611 164 SLLHAHNTLHGVDDNISKSK 183 (221)
Q Consensus 164 ~l~~~~~~~~~i~~~l~~a~ 183 (221)
++.++-.+..-|.+-+.+.+
T Consensus 185 k~~~~a~r~P~IN~Ll~kIk 204 (231)
T KOG3208|consen 185 KVNNIANRFPAINQLLQKIK 204 (231)
T ss_pred HHHHHHHhcchHHHHHHHHH
Confidence 88888888888888777665
No 46
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=82.78 E-value=4 Score=23.97 Aligned_cols=26 Identities=15% Similarity=0.315 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 190 SRRMSRDKWIMGSIISVLVFAILLIL 215 (221)
Q Consensus 190 ~rr~~~dk~il~~ii~~l~~~i~~vl 215 (221)
.|+-+++-++=+..|++|++.|++++
T Consensus 24 a~qnlqelfvnfclilicllli~iiv 49 (52)
T PF04272_consen 24 ARQNLQELFVNFCLILICLLLICIIV 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666554
No 47
>PHA02650 hypothetical protein; Provisional
Probab=82.74 E-value=2.6 Score=27.99 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 027611 199 IMGSIISVLVFAILLILYFKLTR 221 (221)
Q Consensus 199 il~~ii~~l~~~i~~vl~~k~~~ 221 (221)
+++++++++++++++.+|+|..|
T Consensus 52 ~ii~i~~v~i~~l~~flYLK~~~ 74 (81)
T PHA02650 52 FIFLIFSLIIVALFSFFVFKGYT 74 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33446666777777888888653
No 48
>PHA03164 hypothetical protein; Provisional
Probab=81.55 E-value=2.1 Score=28.20 Aligned_cols=22 Identities=14% Similarity=0.469 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027611 196 DKWIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 196 dk~il~~ii~~l~~~i~~vl~~ 217 (221)
--+++.++++.+++.|+||+|.
T Consensus 59 tFlvLtgLaIamILfiifvlyv 80 (88)
T PHA03164 59 TFLVLTGLAIAMILFIIFVLYV 80 (88)
T ss_pred ehHHHHHHHHHHHHHHHHHHHh
Confidence 3355556666666677777764
No 49
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.47 E-value=30 Score=28.79 Aligned_cols=72 Identities=21% Similarity=0.341 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHhhccC
Q 027611 33 LKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESG 108 (221)
Q Consensus 33 ~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~~ 108 (221)
.....+.+++.....++.-++.|+..+..+... ......++.+.+.+++.++.++..+...+ .+|.++|+.+
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k-~~~~~~~i~~~~~eik~l~~eI~~~~~~I---~~r~~~l~~r 106 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQSK-IDELQKEIDQSKAEIKKLQKEIAELKENI---VERQELLKKR 106 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 345667777777777887788777777765433 34566777777777777777777766554 4678887753
No 50
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=81.00 E-value=12 Score=28.85 Aligned_cols=59 Identities=12% Similarity=0.322 Sum_probs=45.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCChhH-HHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 027611 37 KLSEIKTGLDDADALIRKMDLEARSLQPNV-KAMLLSKLREYKTDLNNLKNEVKRVTSGN 95 (221)
Q Consensus 37 ~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~-r~~~~~k~~~~~~~l~~l~~~~~~~~~~~ 95 (221)
.+..++.++++....+..|+.|++.++++- -.+++..+..+++++..++..+..++...
T Consensus 87 ~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~ 146 (201)
T KOG4603|consen 87 KIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGT 146 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356678888888999999999998877543 35678888888888888888887776543
No 51
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=80.75 E-value=63 Score=32.15 Aligned_cols=55 Identities=24% Similarity=0.276 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcc--hHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 027611 6 EGYERQYCELSAGLSRKCTAASALD--GELKKQKLSEIKTGLDDADALIRKMDLEAR 60 (221)
Q Consensus 6 ~~ye~e~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~ 60 (221)
..++.+++...+.|..+-.+.+.+. -+.+...+..+...+.+.+..+..+..|+.
T Consensus 277 ~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~ 333 (1074)
T KOG0250|consen 277 NEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVD 333 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Confidence 4556666666655555444443321 122333344444444444444444444443
No 52
>PHA02975 hypothetical protein; Provisional
Probab=80.52 E-value=4.6 Score=26.06 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 027611 198 WIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
+++.+++.++++++++.+|+|..
T Consensus 46 ~~ii~i~~v~~~~~~~flYLK~~ 68 (69)
T PHA02975 46 ILIIFIIFITCIAVFTFLYLKLM 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445666666777778888864
No 53
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=79.69 E-value=31 Score=27.90 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHhhcchhh
Q 027611 146 ETEELGVSILQDLHQQRQSLLHAHNTLHG 174 (221)
Q Consensus 146 ete~~g~~i~~~L~~Qre~l~~~~~~~~~ 174 (221)
+++++...+..++..+|+-+.+...++..
T Consensus 110 ~tde~k~~~~~ei~k~r~e~~~ml~evK~ 138 (230)
T PF03904_consen 110 DTDELKNIAQNEIKKVREENKSMLQEVKQ 138 (230)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888888888887777776555
No 54
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=79.64 E-value=24 Score=26.57 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=25.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 027611 1 MSQVFEGYERQYCELSAGLSRKCTAASALD 30 (221)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~ 30 (221)
|...+..|+.++..-++++...|..+.+..
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t 52 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNST 52 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhh
Confidence 346789999999999999999999986543
No 55
>PRK14762 membrane protein; Provisional
Probab=79.47 E-value=2.4 Score=21.60 Aligned_cols=16 Identities=19% Similarity=0.513 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 027611 197 KWIMGSIISVLVFAIL 212 (221)
Q Consensus 197 k~il~~ii~~l~~~i~ 212 (221)
|+++|.+.+++++++.
T Consensus 2 ki~lw~i~iifligll 17 (27)
T PRK14762 2 KIILWAVLIIFLIGLL 17 (27)
T ss_pred eeHHHHHHHHHHHHHH
Confidence 4567766555554443
No 56
>PHA02844 putative transmembrane protein; Provisional
Probab=79.35 E-value=3.5 Score=27.07 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 027611 201 GSIISVLVFAILLILYFKLTR 221 (221)
Q Consensus 201 ~~ii~~l~~~i~~vl~~k~~~ 221 (221)
++++.++++++++.+|+|..|
T Consensus 53 i~i~~v~~~~~~~flYLK~~~ 73 (75)
T PHA02844 53 LTIIFVVFATFLTFLYLKAVP 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHheec
Confidence 445566666677788888653
No 57
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=79.13 E-value=33 Score=27.89 Aligned_cols=12 Identities=25% Similarity=0.274 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 027611 73 KLREYKTDLNNL 84 (221)
Q Consensus 73 k~~~~~~~l~~l 84 (221)
++.......+..
T Consensus 65 kL~~~e~~~de~ 76 (237)
T PF00261_consen 65 KLEEAEKRADES 76 (237)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 58
>PF12669 P12: Virus attachment protein p12 family
Probab=78.38 E-value=1.4 Score=27.63 Aligned_cols=8 Identities=13% Similarity=0.110 Sum_probs=3.3
Q ss_pred HHHHHHhc
Q 027611 213 LILYFKLT 220 (221)
Q Consensus 213 ~vl~~k~~ 220 (221)
+++|++|+
T Consensus 14 ~v~~r~~~ 21 (58)
T PF12669_consen 14 YVAIRKFI 21 (58)
T ss_pred HHHHHHHH
Confidence 33444443
No 59
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=78.30 E-value=3.1 Score=30.35 Aligned_cols=20 Identities=30% Similarity=0.349 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027611 198 WIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~ 217 (221)
+|.+++++.++++|+++.|+
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~ 87 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYC 87 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHH
Confidence 55555555555566555555
No 60
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=77.93 E-value=25 Score=27.32 Aligned_cols=50 Identities=10% Similarity=0.226 Sum_probs=26.8
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Q 027611 171 TLHGVDDNISKSKKILTAMSRRMSRD-KWIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 171 ~~~~i~~~l~~a~~li~~m~rr~~~d-k~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
.+..+...+..-...-..|..+.... +.+++++++++++-.+++.|+-|+
T Consensus 65 ~l~~~~~el~~le~~k~~id~~A~~~~~~~~w~gl~~l~~q~~~l~rLTf~ 115 (180)
T PF04678_consen 65 RLEELRQELAPLEKIKQEIDEKAEKRARRLLWGGLALLVVQFGILARLTFW 115 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444444443333 456677777777666666665553
No 61
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=77.88 E-value=16 Score=23.69 Aligned_cols=27 Identities=30% Similarity=0.646 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 189 MSRRMSRDKWIMGSIISVLVFAILLIL 215 (221)
Q Consensus 189 m~rr~~~dk~il~~ii~~l~~~i~~vl 215 (221)
+.+=....||+..++++.++.+++.++
T Consensus 43 l~~I~~n~kW~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 43 LEKIKSNTKWIWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345567777777777666554443
No 62
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=77.86 E-value=4.5 Score=31.16 Aligned_cols=49 Identities=24% Similarity=0.329 Sum_probs=25.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027611 38 LSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (221)
Q Consensus 38 ~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~ 92 (221)
+.++|.++.+|-+----|+.|+ .+|..+...+++++.++.+|+.++ ..+
T Consensus 2 LeD~EsklN~AIERnalLE~EL-----dEKE~L~~~~QRLkDE~RDLKqEl-~V~ 50 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL-----DEKENLREEVQRLKDELRDLKQEL-IVQ 50 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCH------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 4678888888888888888888 457788899999999999999988 443
No 63
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=77.60 E-value=3.2 Score=23.92 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027611 202 SIISVLVFAILLILYFKL 219 (221)
Q Consensus 202 ~ii~~l~~~i~~vl~~k~ 219 (221)
++.+..+.+++.++|-||
T Consensus 16 lVglv~i~iva~~iYRKw 33 (43)
T PF08114_consen 16 LVGLVGIGIVALFIYRKW 33 (43)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444555667778787
No 64
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=77.55 E-value=42 Score=28.22 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 027611 200 MGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 200 l~~ii~~l~~~i~~vl~~k~~ 220 (221)
-++++++++.+=++.+++|++
T Consensus 265 ~~~i~llfi~iel~Pv~~Kl~ 285 (301)
T PF14362_consen 265 SLFIFLLFIAIELLPVLFKLL 285 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 356666666667778888875
No 65
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=77.32 E-value=3.9 Score=26.78 Aligned_cols=22 Identities=45% Similarity=0.689 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027611 198 WIMGSIISVLVFAILLILYFKL 219 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~k~ 219 (221)
+++.++|+++++++++.+|.|.
T Consensus 50 ~~ii~ii~v~ii~~l~flYLK~ 71 (72)
T PF12575_consen 50 ILIISIIFVLIIVLLTFLYLKL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4445555556666666777764
No 66
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.03 E-value=94 Score=32.02 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 027611 66 VKAMLLSKLREYKTDLNNLKNEVKRVTSGN 95 (221)
Q Consensus 66 ~r~~~~~k~~~~~~~l~~l~~~~~~~~~~~ 95 (221)
.+..|..++..+..++..+...+..+....
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~ 911 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQD 911 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355677777777777777777666654443
No 67
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=76.86 E-value=16 Score=23.08 Aligned_cols=61 Identities=21% Similarity=0.168 Sum_probs=39.4
Q ss_pred HHhhhhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHH
Q 027611 122 RLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKS 182 (221)
Q Consensus 122 ~ll~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a 182 (221)
.++++++.++++...++++..++.++..-=..=.+.|..=+.++..+...+......+..-
T Consensus 2 ~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I 62 (66)
T PF12352_consen 2 RLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRI 62 (66)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3556666677776777777777766665444445566677777777777777666665543
No 68
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=76.49 E-value=1.1 Score=31.61 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027611 196 DKWIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 196 dk~il~~ii~~l~~~i~~vl~~ 217 (221)
+-++++++.++|+++++++|||
T Consensus 62 ~iili~lls~v~IlVily~IyY 83 (101)
T PF06024_consen 62 NIILISLLSFVCILVILYAIYY 83 (101)
T ss_pred cchHHHHHHHHHHHHHHhhheE
Confidence 3355555666666666666665
No 69
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=75.98 E-value=33 Score=26.22 Aligned_cols=58 Identities=17% Similarity=0.422 Sum_probs=35.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027611 37 KLSEIKTGLDDADALIRKMDLEARSLQP-NVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (221)
Q Consensus 37 ~~~~~~~~l~ea~~~l~~m~~E~~~~~~-~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~ 94 (221)
.+..+...+.+++..++.+..|+..+.. ..-..+...+.++..++..+...+..++..
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3666666667777777777666655321 112346666666666666666666666554
No 70
>PRK11519 tyrosine kinase; Provisional
Probab=75.40 E-value=75 Score=30.40 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=32.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 36 QKLSEIKTGLDDADALIRKMDLEARSLQP-NVKAMLLSKLREYKTDLNNLKNEVKR 90 (221)
Q Consensus 36 ~~~~~~~~~l~ea~~~l~~m~~E~~~~~~-~~r~~~~~k~~~~~~~l~~l~~~~~~ 90 (221)
+.+.+++..|++++..+..+..+-..+.. .+-......+..++.++.+++.+...
T Consensus 274 ~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~ 329 (719)
T PRK11519 274 QQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAE 329 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777777777777777776554432 22233445556666666555444433
No 71
>PHA02819 hypothetical protein; Provisional
Probab=75.06 E-value=6.5 Score=25.52 Aligned_cols=21 Identities=19% Similarity=0.621 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 027611 200 MGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 200 l~~ii~~l~~~i~~vl~~k~~ 220 (221)
+.++++++++++++.+|+|..
T Consensus 50 ii~l~~~~~~~~~~flYLK~~ 70 (71)
T PHA02819 50 IIGLVTIVFVIIFIIFYLKVI 70 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 334555666677778888864
No 72
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=74.85 E-value=1.3 Score=39.96 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=9.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHh
Q 027611 38 LSEIKTGLDDADALIRKMDLEAR 60 (221)
Q Consensus 38 ~~~~~~~l~ea~~~l~~m~~E~~ 60 (221)
+.++...+++.--.+..++..++
T Consensus 138 V~~l~~g~~~~~~av~~lQd~IN 160 (490)
T PF00523_consen 138 VQELTNGLSQLAVAVQALQDFIN 160 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceecchHHHHHHHHHHHHHHHHH
Confidence 33333334443334444444443
No 73
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=74.67 E-value=4.7 Score=25.93 Aligned_cols=16 Identities=44% Similarity=0.403 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 027611 202 SIISVLVFAILLILYF 217 (221)
Q Consensus 202 ~ii~~l~~~i~~vl~~ 217 (221)
+++++|++++++++|-
T Consensus 6 iLi~ICVaii~lIlY~ 21 (68)
T PF05961_consen 6 ILIIICVAIIGLILYG 21 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555553
No 74
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=73.57 E-value=5 Score=26.97 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027611 198 WIMGSIISVLVFAILLILYFK 218 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~k 218 (221)
.|+.+++++..+++.+|+|..
T Consensus 5 ~i~~iialiv~~iiaIvvW~i 25 (81)
T PF00558_consen 5 EILAIIALIVALIIAIVVWTI 25 (81)
T ss_dssp ---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555554
No 75
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=73.12 E-value=50 Score=28.41 Aligned_cols=84 Identities=7% Similarity=0.148 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 027611 3 QVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLN 82 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~ 82 (221)
+.|++.++|++.+.+.-..-..+++.... ....+-+.+..-+.-++.+...+...+++...+-...+++.++++.
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~-----lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik 78 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSK-----LQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIK 78 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence 45777777777777666665555543321 1122223333333333344444444332222233344455555555
Q ss_pred HHHHHHHHh
Q 027611 83 NLKNEVKRV 91 (221)
Q Consensus 83 ~l~~~~~~~ 91 (221)
+.+..+...
T Consensus 79 ~r~~~l~Dm 87 (330)
T PF07851_consen 79 ERRCQLFDM 87 (330)
T ss_pred HHHhhHHHH
Confidence 555555443
No 76
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=72.62 E-value=82 Score=29.24 Aligned_cols=84 Identities=21% Similarity=0.243 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhH--HHHHHHHHHHHHHHHHHHHH
Q 027611 9 ERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNV--KAMLLSKLREYKTDLNNLKN 86 (221)
Q Consensus 9 e~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~--r~~~~~k~~~~~~~l~~l~~ 86 (221)
+.++..+-++|...+..+..+.-+.....+..++.. ++.+...|+.|+..-+... ...+...+...+.....+..
T Consensus 255 ~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~---Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~ 331 (569)
T PRK04778 255 EKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQER---IDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKE 331 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433333333333332 3334444555554333211 23455566666666666777
Q ss_pred HHHHhhccC
Q 027611 87 EVKRVTSGN 95 (221)
Q Consensus 87 ~~~~~~~~~ 95 (221)
++..+..++
T Consensus 332 Ei~~l~~sY 340 (569)
T PRK04778 332 EIDRVKQSY 340 (569)
T ss_pred HHHHHHHcc
Confidence 776666554
No 77
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=72.61 E-value=47 Score=26.51 Aligned_cols=50 Identities=10% Similarity=0.132 Sum_probs=24.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 027611 2 SQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDL 57 (221)
Q Consensus 2 s~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~ 57 (221)
|..|..|-.++..-+......+..+..+++ +..++..+.+.+..+.....
T Consensus 4 ~~~~~~~~d~lq~~i~~as~~lNd~TGYs~------Ie~LK~~i~~~E~~l~~~r~ 53 (207)
T PF05546_consen 4 SKKLSFYMDSLQETIFTASQALNDVTGYSE------IEKLKKSIEELEDELEAARQ 53 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChHH------HHHHHHHHHHHHHHHHHHHH
Confidence 345556666655555555555544443332 33345555555544443333
No 78
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=72.02 E-value=39 Score=26.52 Aligned_cols=60 Identities=20% Similarity=0.441 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 32 ELKKQKLSEIKTGLDDADALIRKMDLEARSL-----QPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 32 ~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~-----~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
..+...+..++..+.+++.-+..++.++... +...|..+..++..++.++..++.++...
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777776666442 34568888899999999999888888744
No 79
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=71.54 E-value=34 Score=24.37 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 027611 3 QVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLE 58 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E 58 (221)
+.+.+--.++-....++....+.++..+.+.|...+..++..++..+..+..+++-
T Consensus 8 eiVq~e~~~if~~yq~l~~~~~~~~~fd~egK~~~Id~m~~LidkqkiF~~Rl~LS 63 (108)
T PF08855_consen 8 EIVQDELQDIFEDYQELMQMGSKYGKFDREGKKIHIDKMEELIDKQKIFYKRLELS 63 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444555555556667777777888888999999999999999999988888774
No 80
>PF14937 DUF4500: Domain of unknown function (DUF4500)
Probab=71.29 E-value=6 Score=26.79 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 195 RDKWIMGSIISVLVFAILLILYFKL 219 (221)
Q Consensus 195 ~dk~il~~ii~~l~~~i~~vl~~k~ 219 (221)
-||.||.+.++.+.++++++-|++.
T Consensus 35 PNk~iM~~Gl~a~~~c~gYi~Ym~~ 59 (86)
T PF14937_consen 35 PNKPIMAFGLIAITLCVGYIAYMHA 59 (86)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999998864
No 81
>PHA03049 IMV membrane protein; Provisional
Probab=70.81 E-value=6.9 Score=25.09 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 027611 202 SIISVLVFAILLILYF 217 (221)
Q Consensus 202 ~ii~~l~~~i~~vl~~ 217 (221)
+.+++|++++++++|=
T Consensus 6 ~l~iICVaIi~lIvYg 21 (68)
T PHA03049 6 ILVIICVVIIGLIVYG 21 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555566666654
No 82
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=70.77 E-value=6.3 Score=26.52 Aligned_cols=16 Identities=56% Similarity=0.901 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 027611 202 SIISVLVFAILLILYF 217 (221)
Q Consensus 202 ~ii~~l~~~i~~vl~~ 217 (221)
.|+++|+|+|++|++|
T Consensus 29 tILivLVIIiLlImlf 44 (85)
T PF10717_consen 29 TILIVLVIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555554
No 83
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.75 E-value=38 Score=25.89 Aligned_cols=25 Identities=20% Similarity=0.411 Sum_probs=12.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcC
Q 027611 38 LSEIKTGLDDADALIRKMDLEARSL 62 (221)
Q Consensus 38 ~~~~~~~l~ea~~~l~~m~~E~~~~ 62 (221)
+..++..+.++.+-+..+..++..+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l 98 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSL 98 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555554444443
No 84
>PHA02692 hypothetical protein; Provisional
Probab=70.63 E-value=7.7 Score=25.17 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027611 199 IMGSIISVLVFAILLILYFKL 219 (221)
Q Consensus 199 il~~ii~~l~~~i~~vl~~k~ 219 (221)
|+.++++++++++++.+|+|.
T Consensus 49 ii~~~~~~~~~vll~flYLK~ 69 (70)
T PHA02692 49 FLIGLIAAAIGVLLCFHYLKL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 333355566666777888875
No 85
>PRK10132 hypothetical protein; Provisional
Probab=70.49 E-value=36 Score=24.24 Aligned_cols=53 Identities=11% Similarity=0.133 Sum_probs=28.8
Q ss_pred hHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 164 SLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILY 216 (221)
Q Consensus 164 ~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~ 216 (221)
.|..++.++.+.......++........-+..|-|--++|.+.+.++++++++
T Consensus 53 ~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~svgiaagvG~llG~Ll~ 105 (108)
T PRK10132 53 LLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSVGTAAAVGIFIGALLS 105 (108)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 34444445554444333344444444444555667777777777777766654
No 86
>PF15018 InaF-motif: TRP-interacting helix
Probab=70.19 E-value=7.8 Score=22.06 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 027611 202 SIISVLVFAILLILYFKLT 220 (221)
Q Consensus 202 ~ii~~l~~~i~~vl~~k~~ 220 (221)
=++.+.+.++.+.+||.|+
T Consensus 13 Yl~~VSl~Ai~LsiYY~f~ 31 (38)
T PF15018_consen 13 YLFSVSLAAIVLSIYYIFF 31 (38)
T ss_pred HHHHHHHHHHHHHHHHhee
Confidence 3556677788888998775
No 87
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=69.24 E-value=31 Score=23.01 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=12.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhc
Q 027611 38 LSEIKTGLDDADALIRKMDLEARS 61 (221)
Q Consensus 38 ~~~~~~~l~ea~~~l~~m~~E~~~ 61 (221)
+..++.++++|-+.|.-+..|+..
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieE 29 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEE 29 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555443
No 88
>PHA03054 IMV membrane protein; Provisional
Probab=69.10 E-value=9.5 Score=24.78 Aligned_cols=19 Identities=32% Similarity=0.578 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027611 201 GSIISVLVFAILLILYFKL 219 (221)
Q Consensus 201 ~~ii~~l~~~i~~vl~~k~ 219 (221)
+++++++++++++.+|+|.
T Consensus 53 i~l~~v~~~~l~~flYLK~ 71 (72)
T PHA03054 53 IIFFIVLILLLLIYLYLKV 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3455556666667777774
No 89
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=69.06 E-value=5.4 Score=31.29 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=12.1
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhcC
Q 027611 196 DKWIMG-SIISVLVFAILLILYFKLTR 221 (221)
Q Consensus 196 dk~il~-~ii~~l~~~i~~vl~~k~~~ 221 (221)
|-.-++ |||+.|.+.-++++.|||.|
T Consensus 159 D~~SFiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 159 DAASFIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred chhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 333344 44444444444444457764
No 90
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=68.80 E-value=13 Score=25.63 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027611 184 KILTAMSRRMSRDKWIMGSII 204 (221)
Q Consensus 184 ~li~~m~rr~~~dk~il~~ii 204 (221)
+++++..||.....+++.+++
T Consensus 3 ~i~kK~K~k~~l~~~~isi~~ 23 (96)
T PF13800_consen 3 KILKKAKRKSRLRTVVISIIS 23 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 456666666555544444333
No 91
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=67.82 E-value=1e+02 Score=28.55 Aligned_cols=86 Identities=16% Similarity=0.195 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc--chHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 027611 5 FEGYERQYCELSAGLSRKCTAASAL--DGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLN 82 (221)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~ 82 (221)
+.++++++..+...+......+... +-.+-...+.++...+.+++.-...+...+..+..... ....++..++..+.
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~-eAr~kL~~~~~~L~ 428 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDEL-EAREKLERYRNKLH 428 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 4455555555555555544444321 12233344444444444555444444444444443332 34555666666666
Q ss_pred HHHHHHHHh
Q 027611 83 NLKNEVKRV 91 (221)
Q Consensus 83 ~l~~~~~~~ 91 (221)
.+++.+.+.
T Consensus 429 ~ikr~l~k~ 437 (569)
T PRK04778 429 EIKRYLEKS 437 (569)
T ss_pred HHHHHHHHc
Confidence 666655543
No 92
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=67.78 E-value=37 Score=23.36 Aligned_cols=86 Identities=14% Similarity=0.140 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcc-----hHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChh-HH-HHHHHHHHHH
Q 027611 5 FEGYERQYCELSAGLSRKCTAASALD-----GELKKQKLSEIKTGLDDADALIRKMDLEARSLQPN-VK-AMLLSKLREY 77 (221)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~~~~~-----~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~-~r-~~~~~k~~~~ 77 (221)
|-...+|+...+..+...+.+..... ..+....-.++...++.++..|..++.-+.-+..+ .+ .-=...+.+.
T Consensus 3 F~~v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~R 82 (97)
T PF09177_consen 3 FFVVKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRR 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHH
Confidence 56677788888888888877764321 23456677788888888888888888777653211 11 0113444555
Q ss_pred HHHHHHHHHHHHH
Q 027611 78 KTDLNNLKNEVKR 90 (221)
Q Consensus 78 ~~~l~~l~~~~~~ 90 (221)
+.=+..++.++..
T Consensus 83 r~fv~~~~~~i~~ 95 (97)
T PF09177_consen 83 RQFVSAIRNQIKQ 95 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555543
No 93
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.53 E-value=31 Score=22.40 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=8.4
Q ss_pred HHHhhHHHHHHHHHHHHHHH
Q 027611 40 EIKTGLDDADALIRKMDLEA 59 (221)
Q Consensus 40 ~~~~~l~ea~~~l~~m~~E~ 59 (221)
+++.++++|-+.|.-+..|+
T Consensus 8 kLE~KiqqAvdTI~LLQmEi 27 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEI 27 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 94
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=66.94 E-value=13 Score=21.12 Aligned_cols=18 Identities=11% Similarity=0.519 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027611 200 MGSIISVLVFAILLILYF 217 (221)
Q Consensus 200 l~~ii~~l~~~i~~vl~~ 217 (221)
..++++.++++++.++||
T Consensus 9 Iv~V~vg~~iiii~~~~Y 26 (38)
T PF02439_consen 9 IVAVVVGMAIIIICMFYY 26 (38)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444445554
No 95
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=66.87 E-value=71 Score=26.24 Aligned_cols=82 Identities=10% Similarity=0.142 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhhhh--hcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 12 YCELSAGLSRKCTAAS--ALDGELKKQKLSEIKTGLDDADALIRKMDLEARSL-QPNVKAMLLSKLREYKTDLNNLKNEV 88 (221)
Q Consensus 12 ~~~~~~~i~~~l~~~~--~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~-~~~~r~~~~~k~~~~~~~l~~l~~~~ 88 (221)
|...+..+. .++.+. +.+.++....+.+++..|+..+...+.+..-+... +...--+...++.+.+.+++.++.++
T Consensus 107 ~~~~l~~l~-~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~ 185 (262)
T PF14257_consen 107 FDSFLDELS-ELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQL 185 (262)
T ss_pred HHHHHHHHh-ccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 234442 33445666777788888888888888876666543 34445578889999999999999888
Q ss_pred HHhhcc
Q 027611 89 KRVTSG 94 (221)
Q Consensus 89 ~~~~~~ 94 (221)
+.+...
T Consensus 186 ~~l~~~ 191 (262)
T PF14257_consen 186 KYLDDR 191 (262)
T ss_pred HHHHHh
Confidence 877543
No 96
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=66.77 E-value=35 Score=24.06 Aligned_cols=17 Identities=18% Similarity=0.053 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHhhh
Q 027611 9 ERQYCELSAGLSRKCTA 25 (221)
Q Consensus 9 e~e~~~~~~~i~~~l~~ 25 (221)
..|++.+..+++..|..
T Consensus 14 ~~el~~L~d~lEevL~s 30 (104)
T COG4575 14 LAELQELLDTLEEVLKS 30 (104)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444444433
No 97
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=66.47 E-value=19 Score=21.36 Aligned_cols=19 Identities=11% Similarity=0.376 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027611 199 IMGSIISVLVFAILLILYF 217 (221)
Q Consensus 199 il~~ii~~l~~~i~~vl~~ 217 (221)
.+.+.+++|+++.++++|+
T Consensus 10 ~~~F~~lIC~Fl~~~~~F~ 28 (54)
T PF06716_consen 10 LLAFGFLICLFLFCLVVFI 28 (54)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444443
No 98
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=66.47 E-value=9.5 Score=24.56 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027611 198 WIMGSIISVLVFAILLILYFK 218 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~k 218 (221)
+||.+|+++.+++|+.-+|-|
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 678888888888898999876
No 99
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=66.13 E-value=72 Score=26.10 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=31.7
Q ss_pred hHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 027611 162 RQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRD--KWIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 162 re~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~d--k~il~~ii~~l~~~i~~vl~~ 217 (221)
...|..-..-+..+...++..-.-++.-..|+-.. +-.-|+..++++++++++++.
T Consensus 187 ~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~~v~~~Fi~m 244 (251)
T PF09753_consen 187 SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIFVVIIVFIMM 244 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 45555556667777777777777777777665443 333344555444444443333
No 100
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=65.75 E-value=7.2 Score=29.35 Aligned_cols=20 Identities=25% Similarity=0.183 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 027611 200 MGSIISVLVFAILLILYFKL 219 (221)
Q Consensus 200 l~~ii~~l~~~i~~vl~~k~ 219 (221)
++++|+..+++|++++|+.+
T Consensus 121 i~~~i~g~ll~i~~giy~~~ 140 (145)
T PF10661_consen 121 ILLSIGGILLAICGGIYVVL 140 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666666543
No 101
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.17 E-value=35 Score=22.16 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=12.8
Q ss_pred Cc-hhHHHHHHHHHHHHHHHHH
Q 027611 1 MS-QVFEGYERQYCELSAGLSR 21 (221)
Q Consensus 1 Ms-~~f~~ye~e~~~~~~~i~~ 21 (221)
|| ++|+..+.-++..++.|.-
T Consensus 1 MSlEv~ekLE~KiqqAvdTI~L 22 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTITL 22 (79)
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 55 6777777666655555543
No 102
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=64.98 E-value=33 Score=23.22 Aligned_cols=50 Identities=16% Similarity=0.034 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhhhh--hcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 027611 12 YCELSAGLSRKCTAAS--ALDGELKKQKLSEIKTGLDDADALIRKMDLEARS 61 (221)
Q Consensus 12 ~~~~~~~i~~~l~~~~--~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~ 61 (221)
|..-++.+..+|..+. ..+..+.-.+..+.-..|.+|+..|..-..++..
T Consensus 27 FE~klerakeiLe~LndpeisL~eSvkLYkeG~~lL~eAqk~LE~AkLe~~e 78 (86)
T PRK14065 27 FEEHVHSLEQAIDRLNDPNLSLKDGMDLYKTAMQELFLAQKLLENAYLEYEK 78 (86)
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444442 2333444445555555555555555554444443
No 103
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=64.89 E-value=47 Score=23.45 Aligned_cols=57 Identities=18% Similarity=0.335 Sum_probs=44.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcCChhH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 35 KQKLSEIKTGLDDADALIRKMDLEARSLQPNV-KAMLLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 35 ~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~-r~~~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
..-+..+...+.+.+.=+..++.++..+|... =..+.-.+.+.+.+++.+..+++..
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45567788888888999999999999999754 3467777888888888888777665
No 104
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.45 E-value=51 Score=23.76 Aligned_cols=40 Identities=13% Similarity=0.229 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHH
Q 027611 141 RRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180 (221)
Q Consensus 141 ~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~ 180 (221)
..-+..|.+.-.++..=++.-=+++..-..+++++++..+
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad 67 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRAD 67 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHH
Confidence 3444455555555554445555555555555555544333
No 105
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=64.35 E-value=22 Score=24.44 Aligned_cols=27 Identities=37% Similarity=0.482 Sum_probs=10.9
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 027611 190 SRRMSRD-KWIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 190 ~rr~~~d-k~il~~ii~~l~~~i~~vl~~ 217 (221)
.+..... ++++++++++++.+ ++++|.
T Consensus 6 ~~~~~~~~~l~i~l~~~v~~~a-~~~v~~ 33 (97)
T PF04999_consen 6 IRDIKRQKKLIILLVIVVLISA-LGVVYS 33 (97)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH-HHHHHH
Confidence 3444444 33334333333333 334444
No 106
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=63.89 E-value=68 Score=27.64 Aligned_cols=96 Identities=11% Similarity=0.238 Sum_probs=57.6
Q ss_pred hhhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHH-------H
Q 027611 125 MSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRD-------K 197 (221)
Q Consensus 125 ~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~d-------k 197 (221)
.....+......|...+..+.+.+.-=.....++..-..........+..+...+.+|.+++.....-..+= +
T Consensus 225 ~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~ 304 (344)
T PF12777_consen 225 EAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELE 304 (344)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHH
Confidence 334445555556666666666655544444444444445566666777888889999999998876542211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 027611 198 WIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
--+..+++=++++-+||.|+..|
T Consensus 305 ~~~~~l~GD~llaaa~isY~G~f 327 (344)
T PF12777_consen 305 EQLKNLVGDSLLAAAFISYLGPF 327 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHhcccHHHHHHHHHHHHHcCCC
Confidence 12234566666677778776443
No 107
>PF15106 TMEM156: TMEM156 protein family
Probab=62.63 E-value=11 Score=30.16 Aligned_cols=24 Identities=8% Similarity=0.336 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 027611 197 KWIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 197 k~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
|+.-|++++++++..++++++|++
T Consensus 175 KITWYvLVllVfiflii~iI~KIl 198 (226)
T PF15106_consen 175 KITWYVLVLLVFIFLIILIIYKIL 198 (226)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555444444444444555553
No 108
>PRK10404 hypothetical protein; Provisional
Probab=62.60 E-value=51 Score=23.13 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 027611 9 ERQYCELSAGLSRKCT 24 (221)
Q Consensus 9 e~e~~~~~~~i~~~l~ 24 (221)
..+++.+..+++..+.
T Consensus 11 ~~dl~~L~~dle~Ll~ 26 (101)
T PRK10404 11 DDDLTLLSETLEEVLR 26 (101)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 109
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=62.46 E-value=43 Score=23.55 Aligned_cols=38 Identities=11% Similarity=0.227 Sum_probs=27.0
Q ss_pred HHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHH
Q 027611 156 QDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRM 193 (221)
Q Consensus 156 ~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~ 193 (221)
.....|.|+|.............+..-...+..|+.|.
T Consensus 60 e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 60 EKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777777777777777778887775
No 110
>PRK09759 small toxic polypeptide; Provisional
Probab=62.30 E-value=5 Score=24.36 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027611 196 DKWIMGSIISVLVFAILLILY 216 (221)
Q Consensus 196 dk~il~~ii~~l~~~i~~vl~ 216 (221)
.|.++++++++|+.+++|+..
T Consensus 3 ~k~~l~~liivCiTvL~f~~l 23 (50)
T PRK09759 3 QKYRLLSLIVICFTLLFFTWM 23 (50)
T ss_pred ceeeHHHHHHHHHHHHHHHHH
Confidence 466777777777777766553
No 111
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=62.15 E-value=31 Score=20.49 Aligned_cols=33 Identities=15% Similarity=0.323 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHhhccCc
Q 027611 69 MLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGM 109 (221)
Q Consensus 69 ~~~~k~~~~~~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~~~ 109 (221)
.+++++......+..|+..|... .+.+||.+|.
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~y--------KKa~lFp~G~ 35 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQY--------KKAELFPNGR 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHTTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHCCCch
Confidence 56677777777788888887765 3678998753
No 112
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=62.00 E-value=53 Score=25.42 Aligned_cols=53 Identities=11% Similarity=0.225 Sum_probs=29.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCChhHH--HHHHHHHHHHHHHHHHHHHHH
Q 027611 36 QKLSEIKTGLDDADALIRKMDLEARSLQPNVK--AMLLSKLREYKTDLNNLKNEV 88 (221)
Q Consensus 36 ~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r--~~~~~k~~~~~~~l~~l~~~~ 88 (221)
.+...++....+++.-|++++.++..+....+ ..+++|...+..+|+.+..+|
T Consensus 113 rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 113 RLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555566665555443221 346666666667777666665
No 113
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=61.44 E-value=1.9 Score=30.03 Aligned_cols=19 Identities=11% Similarity=0.268 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 027611 203 IISVLVFAILLILYFKLTR 221 (221)
Q Consensus 203 ii~~l~~~i~~vl~~k~~~ 221 (221)
+++++.++++|++||-++|
T Consensus 75 ~~~~v~~lv~~l~w~f~~r 93 (96)
T PTZ00382 75 VVAVVGGLVGFLCWWFVCR 93 (96)
T ss_pred hhhHHHHHHHHHhheeEEe
Confidence 3444444455566664443
No 114
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=60.96 E-value=70 Score=27.91 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 027611 1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTD 80 (221)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~ 80 (221)
+++.|.+....+..+..+|...+.+|++-. ..+-..++..-.-+.....++..+....+ .....+.....+
T Consensus 232 I~~~~~~~~~~L~kl~~~i~~~lekI~sRE--------k~iN~qle~l~~eYr~~~~~ls~~~~~y~-~~s~~V~~~t~~ 302 (359)
T PF10498_consen 232 IESALPETKSQLDKLQQDISKTLEKIESRE--------KYINNQLEPLIQEYRSAQDELSEVQEKYK-QASEGVSERTRE 302 (359)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHH
Q ss_pred HHHHHHHHHHhhccCCChhhhhHhhccCc
Q 027611 81 LNNLKNEVKRVTSGNVNQAARDELLESGM 109 (221)
Q Consensus 81 l~~l~~~~~~~~~~~~~~~~r~~Ll~~~~ 109 (221)
|+.+..++...+... .+|+.-+..++
T Consensus 303 L~~IseeLe~vK~em---eerg~~mtD~s 328 (359)
T PF10498_consen 303 LAEISEELEQVKQEM---EERGSSMTDGS 328 (359)
T ss_pred HHHHHHHHHHHHHHH---HHhcCCCCCCC
No 115
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=60.93 E-value=1.2e+02 Score=29.42 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 027611 6 EGYERQYCELSAGLSRKCTA 25 (221)
Q Consensus 6 ~~ye~e~~~~~~~i~~~l~~ 25 (221)
.....++..++.++...-..
T Consensus 507 ~~~~~~~~~li~~L~~~~~~ 526 (771)
T TIGR01069 507 GEFKEEINVLIEKLSALEKE 526 (771)
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 33444455555544443333
No 116
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=60.45 E-value=44 Score=21.82 Aligned_cols=51 Identities=16% Similarity=0.320 Sum_probs=22.5
Q ss_pred HHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 41 IKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 41 ~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
=...+.+++..+++.+..+..+.-..+..=...-..|...+..|+.++..+
T Consensus 23 r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~l 73 (79)
T PF05008_consen 23 RKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555544443322111123344555555555555544
No 117
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=60.17 E-value=47 Score=21.96 Aligned_cols=48 Identities=10% Similarity=0.213 Sum_probs=35.0
Q ss_pred HHhhHHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 41 IKTGLDDADALIRKMDLEARSLQP-NVKAMLLSKLREYKTDLNNLKNEV 88 (221)
Q Consensus 41 ~~~~l~ea~~~l~~m~~E~~~~~~-~~r~~~~~k~~~~~~~l~~l~~~~ 88 (221)
.+..+.-.++.+..|---++..|. +.+..|+.++.+|....+.|+...
T Consensus 22 ~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 22 AEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQN 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455556666666667777774 446778999999999999998775
No 118
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=59.81 E-value=11 Score=25.48 Aligned_cols=11 Identities=36% Similarity=0.386 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 027611 197 KWIMGSIISVL 207 (221)
Q Consensus 197 k~il~~ii~~l 207 (221)
|+++.++++++
T Consensus 5 kii~iii~li~ 15 (85)
T PF11337_consen 5 KIILIIIILIV 15 (85)
T ss_pred HHHHHHHHHHH
Confidence 34444433333
No 119
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=59.71 E-value=2.1e+02 Score=29.15 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=16.0
Q ss_pred HHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHH
Q 027611 156 QDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAM 189 (221)
Q Consensus 156 ~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m 189 (221)
..|..|.+.+.....+-..+...+.......+.+
T Consensus 272 ~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i 305 (1109)
T PRK10929 272 QALNQQAQRMDLIASQQRQAASQTLQVRQALNTL 305 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444444444444444444433
No 120
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.65 E-value=43 Score=26.59 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 027611 199 IMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 199 il~~ii~~l~~~i~~vl~~k~~ 220 (221)
-++.+++++++.|+=|+..|||
T Consensus 179 Sl~e~~~vv~iSi~Qv~ilk~f 200 (209)
T KOG1693|consen 179 SLLEIIAVVVISIAQVFILKFF 200 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555554
No 121
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=59.46 E-value=1.3e+02 Score=26.81 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=20.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhh
Q 027611 1 MSQVFEGYERQYCELSAGLSRKCTAAS 27 (221)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~ 27 (221)
|.++|...|+|-..+.+.++..+++++
T Consensus 188 ~V~lentlEQEqEalvN~LwKrmdkLe 214 (552)
T KOG2129|consen 188 AVQLENTLEQEQEALVNSLWKRMDKLE 214 (552)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888777774
No 122
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=59.32 E-value=66 Score=25.80 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=21.7
Q ss_pred HhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 027611 163 QSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWI 199 (221)
Q Consensus 163 e~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~i 199 (221)
+.|.+...++...+-+++++..+++.+.-|...--+.
T Consensus 15 ~~L~rle~qi~q~~~~~~~~qs~l~~~~~r~tv~slA 51 (251)
T COG5415 15 ADLSRLESQIHQLDVALKKSQSILSQWQSRLTVYSLA 51 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3445555556666666666666666666665544433
No 123
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=58.43 E-value=33 Score=19.64 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 188 AMSRRMSRDKWIMGSIISVLVFAILLIL 215 (221)
Q Consensus 188 ~m~rr~~~dk~il~~ii~~l~~~i~~vl 215 (221)
.|.||..-|.+....+.+....++.=++
T Consensus 5 dm~RR~lmN~ll~Gava~~a~~~lyP~~ 32 (39)
T PF08802_consen 5 DMSRRQLMNLLLGGAVAVPAGGMLYPYV 32 (39)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHhhHHHHHHHHhhhhe
Confidence 6899999999777655555554443333
No 124
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=58.26 E-value=1.8e+02 Score=27.95 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=32.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCChh-HHHHHHHHHHHHHHHHHHHHHHH
Q 027611 36 QKLSEIKTGLDDADALIRKMDLEARSLQPN-VKAMLLSKLREYKTDLNNLKNEV 88 (221)
Q Consensus 36 ~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~-~r~~~~~k~~~~~~~l~~l~~~~ 88 (221)
+.+..++..+++++..+..+..+-..+... +-..+..++.+++..+..++...
T Consensus 274 ~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~ 327 (726)
T PRK09841 274 RQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFRE 327 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777887777777765544432 22334456666666666555444
No 125
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=58.21 E-value=1.8e+02 Score=28.00 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027611 68 AMLLSKLREYKTDLNNLKNEVKRVTSG 94 (221)
Q Consensus 68 ~~~~~k~~~~~~~l~~l~~~~~~~~~~ 94 (221)
.+|...++.++..++.++..+..++..
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~~lk~k 661 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIEQLKKK 661 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888888877776544
No 126
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=58.14 E-value=28 Score=29.18 Aligned_cols=35 Identities=14% Similarity=0.411 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027611 183 KKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 183 ~~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
.++++.+.|..+.=|++. +++.++|+|+.||||+.
T Consensus 160 ~k~lnylARNFYNlr~lA---LflAFaINFILLFYKVs 194 (274)
T PF06459_consen 160 TKFLNYLARNFYNLRFLA---LFLAFAINFILLFYKVS 194 (274)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc
Confidence 356777777777666543 44455668999999864
No 127
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=57.98 E-value=87 Score=24.30 Aligned_cols=60 Identities=12% Similarity=0.277 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 32 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 32 ~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
++-+..+.+++..+....+-|..+..=.+.+.|..+.....-.+.|-.++..-++-|+..
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf~ei 178 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMFREI 178 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555556554443333444444555555555544
No 128
>PHA02902 putative IMV membrane protein; Provisional
Probab=57.62 E-value=14 Score=23.51 Aligned_cols=22 Identities=9% Similarity=0.409 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027611 197 KWIMGSIISVLVFAILLILYFK 218 (221)
Q Consensus 197 k~il~~ii~~l~~~i~~vl~~k 218 (221)
.+++.+++++++..+++..|.+
T Consensus 5 tfvi~~v~v~Ivclliya~YrR 26 (70)
T PHA02902 5 TFVILAVIVIIFCLLIYAAYKR 26 (70)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344443
No 129
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=57.38 E-value=26 Score=18.01 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027611 69 MLLSKLREYKTDLNNLKNEVKR 90 (221)
Q Consensus 69 ~~~~k~~~~~~~l~~l~~~~~~ 90 (221)
.|..++..|..+|..+++....
T Consensus 2 ~Yqakla~YqaeLa~vqk~na~ 23 (25)
T PF06696_consen 2 DYQAKLAQYQAELARVQKANAD 23 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhhc
Confidence 4778888888888888877654
No 130
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=56.33 E-value=61 Score=22.03 Aligned_cols=34 Identities=18% Similarity=0.089 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhh
Q 027611 141 RRTMLETEELGVSILQDLHQQRQSLLHAHNTLHG 174 (221)
Q Consensus 141 ~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~ 174 (221)
...+.+..+.=..+-.++..+...|.....-+..
T Consensus 28 ~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~ 61 (92)
T PF03908_consen 28 LQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKK 61 (92)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444555555555555554444
No 131
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=56.31 E-value=1.1e+02 Score=24.86 Aligned_cols=48 Identities=13% Similarity=0.192 Sum_probs=23.9
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhh
Q 027611 130 LNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDD 177 (221)
Q Consensus 130 l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~ 177 (221)
+.....+.+.+.+.+...+..-..+-..|...++....+...++.+-.
T Consensus 185 lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~ 232 (237)
T PF00261_consen 185 LKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLN 232 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444445555555555555555554443
No 132
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=55.86 E-value=51 Score=20.96 Aligned_cols=52 Identities=15% Similarity=0.304 Sum_probs=32.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 40 EIKTGLDDADALIRKMDLEAR------SLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 40 ~~~~~l~ea~~~l~~m~~E~~------~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
.++..+..++..+..+.--+. ..|+........++..|...+..+...+..+
T Consensus 8 rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 8 RLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444445544444444333 3677777788888888888888888777654
No 133
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=55.64 E-value=19 Score=30.53 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=10.5
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 027611 2 SQVFEGYERQYCELSAGLSR 21 (221)
Q Consensus 2 s~~f~~ye~e~~~~~~~i~~ 21 (221)
|+.|++|++....-..+-..
T Consensus 49 sQRF~EYdErm~~kRqkcKE 68 (299)
T PF02009_consen 49 SQRFEEYDERMQEKRQKCKE 68 (299)
T ss_pred HHHHHHHHhhhhhhHHHHHH
Confidence 35666666666444444443
No 134
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=55.60 E-value=63 Score=21.98 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHH
Q 027611 7 GYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKM 55 (221)
Q Consensus 7 ~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m 55 (221)
+...++..+..++...++......++.-...-..+...++++...+..+
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~ 50 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDA 50 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777776666654433333333344444444444444433
No 135
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=54.76 E-value=68 Score=22.92 Aligned_cols=20 Identities=30% Similarity=0.482 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 027611 200 MGSIISVLVFAILLILYFKL 219 (221)
Q Consensus 200 l~~ii~~l~~~i~~vl~~k~ 219 (221)
..+++++++.++.+.+|+.+
T Consensus 95 ~~~~~~~~lp~~a~~lY~~l 114 (117)
T TIGR03142 95 AALVVVLLLPVLALGLYLKL 114 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 33444555666677888865
No 136
>KOG3046 consensus Transcription factor, subunit of SRB subcomplex of RNA polymerase II [Transcription]
Probab=54.55 E-value=83 Score=23.50 Aligned_cols=54 Identities=20% Similarity=0.358 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHH
Q 027611 31 GELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNL 84 (221)
Q Consensus 31 ~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l 84 (221)
.++-...+..++..++...+.+.++-+-+.+.++.....+.+++...-..+..+
T Consensus 7 ~~q~~ekl~~l~~~le~~~e~~~~Lgl~vs~F~~tsq~~L~qrl~tLv~~L~~l 60 (147)
T KOG3046|consen 7 NDQMQEKLAQLENSLEKFLENFRQLGLIVSNFQPTSQDALNQRLNTLVRGLQDL 60 (147)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcHHHHHHHHHHHHHHhhhh
Confidence 345566788889999999999999999999999888888888887766666554
No 137
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=54.33 E-value=52 Score=20.67 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHH
Q 027611 180 SKSKKILTAMSRRM 193 (221)
Q Consensus 180 ~~a~~li~~m~rr~ 193 (221)
..|..-+..|.||.
T Consensus 9 ETA~~FL~RvGr~q 22 (60)
T PF06072_consen 9 ETATEFLRRVGRQQ 22 (60)
T ss_pred ccHHHHHHHHhHHH
Confidence 34555666676665
No 138
>PRK10780 periplasmic chaperone; Provisional
Probab=54.20 E-value=95 Score=23.60 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhcCChhHH
Q 027611 46 DDADALIRKMDLEARSLQPNVK 67 (221)
Q Consensus 46 ~ea~~~l~~m~~E~~~~~~~~r 67 (221)
.+++.....++.+...+++..+
T Consensus 64 ~elq~~~~~~q~~~~~ms~~~~ 85 (165)
T PRK10780 64 TDLQAKMQKLQRDGSTMKGSDR 85 (165)
T ss_pred HHHHHHHHHHHhcccccCHHHH
Confidence 3333444444444444444443
No 139
>PRK09738 small toxic polypeptide; Provisional
Probab=54.19 E-value=7.6 Score=23.77 Aligned_cols=21 Identities=5% Similarity=0.108 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027611 196 DKWIMGSIISVLVFAILLILY 216 (221)
Q Consensus 196 dk~il~~ii~~l~~~i~~vl~ 216 (221)
+|..+++++++|+.+++|.+.
T Consensus 5 ~~~~~~~livvCiTvL~f~~l 25 (52)
T PRK09738 5 RSPLVWCVLIVCLTLLIFTYL 25 (52)
T ss_pred cceehhhHHHHHHHHHHHHHH
Confidence 456667777777666665543
No 140
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=53.87 E-value=6.6 Score=34.68 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 027611 200 MGSIISVLVFAILLILYFKLTR 221 (221)
Q Consensus 200 l~~ii~~l~~~i~~vl~~k~~~ 221 (221)
-+++|+++..+++|+.||-+.|
T Consensus 373 svavvvvVgglvGfLcWwf~cr 394 (397)
T PF03302_consen 373 SVAVVVVVGGLVGFLCWWFICR 394 (397)
T ss_pred eehhHHHHHHHHHHHhhheeec
Confidence 3567777778889999987665
No 141
>COG4499 Predicted membrane protein [Function unknown]
Probab=53.83 E-value=16 Score=31.90 Aligned_cols=49 Identities=10% Similarity=0.277 Sum_probs=32.9
Q ss_pred HHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027611 156 QDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 156 ~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
.+...+.++..+.-..|.. .+-..-|++-+|+|++++.+++++.|+-|+
T Consensus 196 e~~~kE~e~~~kn~a~VpK----------------~k~~ifk~~giGliillvl~li~~~Y~~f~ 244 (434)
T COG4499 196 EEYQKETEKINKNYAFVPK----------------KKYTIFKYFGIGLIILLVLLLIYFTYYYFS 244 (434)
T ss_pred HHHHHHHHHHhcceeeccc----------------ccceehhhHHHhHHHHHHHHHHHHHHHHHH
Confidence 3366666666655555443 234456788888888888888888888765
No 142
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=53.26 E-value=32 Score=23.63 Aligned_cols=30 Identities=17% Similarity=0.423 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 188 AMSRRMSRDKWIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 188 ~m~rr~~~dk~il~~ii~~l~~~i~~vl~~ 217 (221)
.+-||......+-..++.++++++++++++
T Consensus 3 ~i~kK~K~k~~l~~~~isi~~~lvi~~i~~ 32 (96)
T PF13800_consen 3 KILKKAKRKSRLRTVVISIISALVIFIISF 32 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 344554444444455555555555555443
No 143
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=52.45 E-value=44 Score=19.38 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHH
Q 027611 7 GYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDD 47 (221)
Q Consensus 7 ~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~e 47 (221)
+|..=|.....++.+.|...+..+++.+..++..+...+.+
T Consensus 2 ~y~~Gy~~C~~Ev~~fLs~~~~~~~~~~~~Ll~HL~~~~~~ 42 (45)
T smart00511 2 SFRSGYRECANEVSRFLSQLPGTDPDVRARLLSHLQTHLNQ 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHh
Confidence 57778888889999999888776666677777766665544
No 144
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=52.40 E-value=21 Score=26.08 Aligned_cols=17 Identities=41% Similarity=0.555 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027611 199 IMGSIISVLVFAILLIL 215 (221)
Q Consensus 199 il~~ii~~l~~~i~~vl 215 (221)
|.++|++++..+|++|+
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 43444444444444333
No 145
>PHA03049 IMV membrane protein; Provisional
Probab=52.36 E-value=23 Score=22.77 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027611 198 WIMGSIISVLVFAILLILYFK 218 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~k 218 (221)
++|.+|++.++++|+.-+|-|
T Consensus 5 ~~l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 577777778888888888865
No 146
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=52.07 E-value=33 Score=19.13 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 193 MSRDKWIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 193 ~~~dk~il~~ii~~l~~~i~~vl~~ 217 (221)
-..+|+.++.+++.+++.++-+++.
T Consensus 7 S~fekiT~v~v~lM~i~tvg~v~~~ 31 (35)
T PF13253_consen 7 STFEKITMVVVWLMLILTVGSVVAS 31 (35)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777777777777777766654
No 147
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=52.01 E-value=3.3e+02 Score=29.22 Aligned_cols=67 Identities=12% Similarity=0.152 Sum_probs=48.3
Q ss_pred hhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHH
Q 027611 127 TERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRM 193 (221)
Q Consensus 127 ~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~ 193 (221)
.+.+......+++....+............-|..||.-+.++...+..+...+..+++=+..+.+..
T Consensus 397 qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~ 463 (1822)
T KOG4674|consen 397 QQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKEL 463 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444566666666666666666677889999999999999999988888888777776653
No 148
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=51.86 E-value=58 Score=20.43 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 183 KKILTAMSRRMSRDKWIMGSIISV 206 (221)
Q Consensus 183 ~~li~~m~rr~~~dk~il~~ii~~ 206 (221)
..++++=.+|...-.+++++++++
T Consensus 30 ~eil~ker~R~r~~~~~~~li~aL 53 (64)
T COG4068 30 GEILNKERKRQRNFMILMFLILAL 53 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555
No 149
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=51.78 E-value=21 Score=28.55 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027611 200 MGSIISVLVFAILLILYF 217 (221)
Q Consensus 200 l~~ii~~l~~~i~~vl~~ 217 (221)
+|+||+.++++||.++|.
T Consensus 132 IClIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 132 ICLIIIAVLFLICTLLFL 149 (227)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555566655554
No 150
>PF15102 TMEM154: TMEM154 protein family
Probab=49.93 E-value=6.9 Score=29.38 Aligned_cols=7 Identities=29% Similarity=1.160 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 027611 211 ILLILYF 217 (221)
Q Consensus 211 i~~vl~~ 217 (221)
+++|+|+
T Consensus 76 V~lv~~~ 82 (146)
T PF15102_consen 76 VCLVIYY 82 (146)
T ss_pred HHheeEE
Confidence 3333333
No 151
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.71 E-value=2.8e+02 Score=27.78 Aligned_cols=18 Identities=6% Similarity=0.108 Sum_probs=6.7
Q ss_pred HHHHhhHhHHHhhcchhh
Q 027611 157 DLHQQRQSLLHAHNTLHG 174 (221)
Q Consensus 157 ~L~~Qre~l~~~~~~~~~ 174 (221)
++..++-.+..+...+..
T Consensus 851 e~~~l~~kv~~~~~~~~~ 868 (1174)
T KOG0933|consen 851 ELGNLEAKVDKVEKDVKK 868 (1174)
T ss_pred HHHHHHHHHHhHHhHHHH
Confidence 333333333333333333
No 152
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=49.40 E-value=22 Score=25.15 Aligned_cols=21 Identities=14% Similarity=-0.200 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027611 198 WIMGSIISVLVFAILLILYFK 218 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~k 218 (221)
.++|+.+.+++++++++++||
T Consensus 61 ~~~f~~~~~~~v~~~~~~~y~ 81 (105)
T PF10183_consen 61 LPFFFGFSGSLVFGGVFLAYK 81 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 455665666655566666654
No 153
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=49.24 E-value=1.2e+02 Score=25.68 Aligned_cols=65 Identities=11% Similarity=0.068 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 027611 13 CELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREY 77 (221)
Q Consensus 13 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~ 77 (221)
..+..-+...+..+...-..+=..+...+...+..++..+..++..+...+...+..+..|++.+
T Consensus 131 ~~l~~al~~AL~~l~~mR~~EG~~L~~dl~~rl~~i~~~v~~i~~~~p~~~~~~~~rL~~rl~el 195 (291)
T TIGR00255 131 ALILGALEEALLDFINMREFEGENLKSDIVQRLDLIEREVKKVRSAMPDILQWQRERLKARIEDL 195 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 34445555555555433222333455566666666666666665555555555555555555544
No 154
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=49.09 E-value=71 Score=20.65 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHhcCC
Q 027611 3 QVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTG-----LDDADALIRKMDLEARSLQ 63 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-----l~ea~~~l~~m~~E~~~~~ 63 (221)
++++.|.++....+..+...+..+...+.+.-...+..++.. +..+......++..++..+
T Consensus 1 ell~~f~~~~~~~~~~l~~~~~~~~~~d~~~l~~~~H~lkG~a~~~g~~~l~~~~~~lE~~~~~~~ 66 (90)
T PF01627_consen 1 ELLDIFLEEAPEDLEQLEQALQALEQEDWEELRRLAHRLKGSAGNLGAPRLAELAEQLEQALKSGD 66 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSHHCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhHHhcCHHHHHHHHHHHHHHHHcCC
Confidence 578888999999999999888555443344444555555554 3455666677777666544
No 155
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=48.95 E-value=79 Score=21.12 Aligned_cols=50 Identities=10% Similarity=0.178 Sum_probs=26.8
Q ss_pred HHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 41 IKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 41 ~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
++-.++++++--..+..|+..+.. .|..+..+-.+++.+-..-...++.+
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~-~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQH-QREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566555556655554332 24455555555555555555555443
No 156
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=48.94 E-value=1e+02 Score=22.55 Aligned_cols=55 Identities=18% Similarity=0.331 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhh-cchHHH--HHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 027611 8 YERQYCELSAGLSRKCTAASA-LDGELK--KQKLSEIKTGLDDADALIRKMDLEARSL 62 (221)
Q Consensus 8 ye~e~~~~~~~i~~~l~~~~~-~~~~~~--~~~~~~~~~~l~ea~~~l~~m~~E~~~~ 62 (221)
-.+.+...+..+..-++++.. .....+ ...+..+..++++..++.++++.|+..+
T Consensus 37 Trr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v 94 (126)
T PF07889_consen 37 TRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEV 94 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777643 222222 3557788888999999999998888643
No 157
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=48.85 E-value=45 Score=18.72 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 027611 196 DKWIMGSIISVLV 208 (221)
Q Consensus 196 dk~il~~ii~~l~ 208 (221)
.+||.+++..+++
T Consensus 14 r~Wi~F~l~mi~v 26 (38)
T PF09125_consen 14 RGWIAFALAMILV 26 (38)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHH
Confidence 3466655444443
No 158
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=48.68 E-value=1.6e+02 Score=27.39 Aligned_cols=78 Identities=10% Similarity=0.216 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhhhhhc--chHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 13 CELSAGLSRKCTAASAL--DGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKR 90 (221)
Q Consensus 13 ~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~ 90 (221)
...+.++...+..+... +...|...+...+.......++..+++..=..+.... .....++-++-+++.++.+++.+
T Consensus 110 ~~~L~~ff~s~q~la~~P~~~a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I-~~~V~~vNsLl~qIa~lN~qI~~ 188 (552)
T COG1256 110 STLLNDFFNSLQELASNPSDTAARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEI-AATVDEVNSLLKQIADLNKQIRK 188 (552)
T ss_pred HHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555554322 2345677777777776666666666554322222221 23345555666666666666665
Q ss_pred h
Q 027611 91 V 91 (221)
Q Consensus 91 ~ 91 (221)
.
T Consensus 189 ~ 189 (552)
T COG1256 189 V 189 (552)
T ss_pred h
Confidence 5
No 159
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=48.47 E-value=16 Score=30.03 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 187 TAMSRRMSRDKWIMGSIISVLVFAILLIL 215 (221)
Q Consensus 187 ~~m~rr~~~dk~il~~ii~~l~~~i~~vl 215 (221)
..+..+..+.+.|++++++++++++.+++
T Consensus 187 SSVG~~faRkR~i~f~llgllfliiaigl 215 (256)
T PF09788_consen 187 SSVGPRFARKRAIIFFLLGLLFLIIAIGL 215 (256)
T ss_pred ccccchHhhhHHHHHHHHHHHHHHHHHHH
Confidence 44566777778888877777776666554
No 160
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=47.67 E-value=60 Score=22.93 Aligned_cols=15 Identities=27% Similarity=0.175 Sum_probs=6.3
Q ss_pred hhcchHHHHHHHHHH
Q 027611 27 SALDGELKKQKLSEI 41 (221)
Q Consensus 27 ~~~~~~~~~~~~~~~ 41 (221)
+..+|++..++..++
T Consensus 88 e~l~~eE~~~L~~ei 102 (104)
T PF11460_consen 88 EELSPEELEALQAEI 102 (104)
T ss_pred HhCCHHHHHHHHHHh
Confidence 344444444444333
No 161
>PRK10132 hypothetical protein; Provisional
Probab=47.05 E-value=1e+02 Score=21.90 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 027611 7 GYERQYCELSAGLSRKCTA 25 (221)
Q Consensus 7 ~ye~e~~~~~~~i~~~l~~ 25 (221)
....+++.+..+++..+..
T Consensus 16 ~L~~Dl~~L~~~le~ll~~ 34 (108)
T PRK10132 16 DIQNDVNQLADSLESVLKS 34 (108)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 162
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=46.85 E-value=1.2e+02 Score=22.55 Aligned_cols=6 Identities=17% Similarity=0.301 Sum_probs=1.9
Q ss_pred CChhHH
Q 027611 62 LQPNVK 67 (221)
Q Consensus 62 ~~~~~r 67 (221)
+++..+
T Consensus 73 ls~~~~ 78 (158)
T PF03938_consen 73 LSEEER 78 (158)
T ss_dssp -SSHHH
T ss_pred cchhHH
Confidence 333333
No 163
>PRK11637 AmiB activator; Provisional
Probab=46.30 E-value=2.1e+02 Score=25.34 Aligned_cols=82 Identities=9% Similarity=0.096 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcch--HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHH
Q 027611 8 YERQYCELSAGLSRKCTAASALDG--ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLK 85 (221)
Q Consensus 8 ye~e~~~~~~~i~~~l~~~~~~~~--~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~ 85 (221)
..++++.+..++...-..+..... .+-...+..++..|..+...+...+.++..+.... ..+..++...+.+++..+
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei-~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQI-DELNASIAKLEQQQAAQE 123 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444432211 11223344445555555555555555444433221 234455555555555555
Q ss_pred HHHHH
Q 027611 86 NEVKR 90 (221)
Q Consensus 86 ~~~~~ 90 (221)
..+..
T Consensus 124 ~~l~~ 128 (428)
T PRK11637 124 RLLAA 128 (428)
T ss_pred HHHHH
Confidence 55544
No 164
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=46.30 E-value=3.5e+02 Score=27.78 Aligned_cols=56 Identities=18% Similarity=0.152 Sum_probs=31.5
Q ss_pred HHHHHhhhhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhh
Q 027611 119 QRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHG 174 (221)
Q Consensus 119 ~r~~ll~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~ 174 (221)
+.+.++.++..+......|..+...+.+-..-..........|+..+..+...+..
T Consensus 575 ~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~ 630 (1317)
T KOG0612|consen 575 QIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKE 630 (1317)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444555555566666666666666666666666666655555444443
No 165
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=46.00 E-value=1.2e+02 Score=27.57 Aligned_cols=56 Identities=13% Similarity=0.161 Sum_probs=40.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 35 KQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 35 ~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
+..+.+.+.+..+++.-|..+..|+..+.. .+..+..+++.+..++..|+.++..+
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~sa-q~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNK-QRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666777777777777777666654333 24467889999999999999888543
No 166
>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family. HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.
Probab=45.35 E-value=59 Score=18.67 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHH
Q 027611 6 EGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDD 47 (221)
Q Consensus 6 ~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~e 47 (221)
++|..=|..-..++.+-|...+..++.-+..+++.+...+.+
T Consensus 1 ~~y~~Gy~~C~~Ev~~fL~~~~~~~~~~~~rLl~HL~~~~~~ 42 (43)
T PF07527_consen 1 QKYRAGYSECLNEVSRFLSSVEGVDPGVRARLLSHLQSCLNQ 42 (43)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTS---THHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhcC
Confidence 467888888899999998888777666666666666655443
No 167
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=45.27 E-value=2.2e+02 Score=25.17 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=17.0
Q ss_pred HHHhhcchhhhhhhHHHHHHHHHHHHHHH
Q 027611 165 LLHAHNTLHGVDDNISKSKKILTAMSRRM 193 (221)
Q Consensus 165 l~~~~~~~~~i~~~l~~a~~li~~m~rr~ 193 (221)
+.........+..++..+..+...+..|.
T Consensus 337 l~~~~~~~~~L~r~~~~~~~~y~~ll~r~ 365 (444)
T TIGR03017 337 LNRQRDEMSVLQRDVENAQRAYDAAMQRY 365 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666666776666666654
No 168
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=45.04 E-value=1.2e+02 Score=22.20 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=34.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCh-----hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 36 QKLSEIKTGLDDADALIRKMDLEARSLQP-----NVKAMLLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 36 ~~~~~~~~~l~ea~~~l~~m~~E~~~~~~-----~~r~~~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
+....++..|.+........+.-+..++. =.+++|.+-+..|..-++.|..++..-
T Consensus 52 ~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~ 112 (126)
T PF09403_consen 52 QEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLDKEIAEQ 112 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666655555555444433332 226778888888888888888777654
No 169
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=44.79 E-value=94 Score=20.83 Aligned_cols=56 Identities=14% Similarity=0.104 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhc--------ch-----HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 027611 4 VFEGYERQYCELSAGLSRKCTAASAL--------DG-----ELKKQKLSEIKTGLDDADALIRKMDLEA 59 (221)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~~~~--------~~-----~~~~~~~~~~~~~l~ea~~~l~~m~~E~ 59 (221)
.|-+.-.+++..+..|...+..+... .. .+-..+..++...+..+...|+.|+...
T Consensus 4 ~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~ 72 (103)
T PF00804_consen 4 EFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDN 72 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555566666666666666665221 11 1223445555666666666666666653
No 170
>PHA02849 putative transmembrane protein; Provisional
Probab=44.78 E-value=39 Score=22.43 Aligned_cols=12 Identities=8% Similarity=0.171 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 027611 198 WIMGSIISVLVF 209 (221)
Q Consensus 198 ~il~~ii~~l~~ 209 (221)
+|+.+++.++++
T Consensus 19 vi~v~v~vI~i~ 30 (82)
T PHA02849 19 VILVFVLVISFL 30 (82)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 171
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=44.63 E-value=41 Score=27.05 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 186 LTAMSRRMSRDKWIMGSIISVLVFAILLI 214 (221)
Q Consensus 186 i~~m~rr~~~dk~il~~ii~~l~~~i~~v 214 (221)
+..+.+|..+.+.++++|+.+++.+..++
T Consensus 198 vSsvGsrfar~Ra~~ffilal~~avta~~ 226 (275)
T KOG4684|consen 198 VSSVGSRFARRRALLFFILALTVAVTAVI 226 (275)
T ss_pred hhhhhhHHhhhhhHHHHHHHHHHHHHHHH
Confidence 46778888888888887777665544433
No 172
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=44.38 E-value=57 Score=21.58 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 027611 199 IMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 199 il~~ii~~l~~~i~~vl~~k~~ 220 (221)
++.+.|++|++++....|+.|.
T Consensus 53 l~l~ail~lL~a~Ya~fyl~ls 74 (79)
T PF15168_consen 53 LVLAAILVLLLAFYAFFYLNLS 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3345555556666666666653
No 173
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=44.31 E-value=91 Score=20.51 Aligned_cols=85 Identities=19% Similarity=0.235 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc----chH---HHHHHHHHHHhhHHHHHHHHHHHHHHHhcC---ChhHHHHHHHHH
Q 027611 5 FEGYERQYCELSAGLSRKCTAASAL----DGE---LKKQKLSEIKTGLDDADALIRKMDLEARSL---QPNVKAMLLSKL 74 (221)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~~~~----~~~---~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~---~~~~r~~~~~k~ 74 (221)
+..|..++..+..=|...-..+... +.+ .....+..+...+......++.+......+ ++.....+..++
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~ 82 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKL 82 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 4566666666665555554444211 111 233445555555665555555555444433 234456677777
Q ss_pred HHHHHHHHHHHHHHH
Q 027611 75 REYKTDLNNLKNEVK 89 (221)
Q Consensus 75 ~~~~~~l~~l~~~~~ 89 (221)
......+..+.....
T Consensus 83 ~~l~~~w~~l~~~~~ 97 (105)
T PF00435_consen 83 EELNQRWEALCELVE 97 (105)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777666654
No 174
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=44.14 E-value=29 Score=29.44 Aligned_cols=15 Identities=27% Similarity=0.738 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 027611 203 IISVLVFAILLILYF 217 (221)
Q Consensus 203 ii~~l~~~i~~vl~~ 217 (221)
|.++++++|.+|||+
T Consensus 263 iaIliIVLIMvIIYL 277 (299)
T PF02009_consen 263 IAILIIVLIMVIIYL 277 (299)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344444444
No 175
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=44.12 E-value=83 Score=20.03 Aligned_cols=58 Identities=12% Similarity=0.291 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 33 LKKQKLSEIKTGLDDADALIRKMDLEARSLQ----PNVKAMLLSKLREYKTDLNNLKNEVKR 90 (221)
Q Consensus 33 ~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~----~~~r~~~~~k~~~~~~~l~~l~~~~~~ 90 (221)
.-......+.....+++..+..|...+..++ +.....+.....+....+..+...+..
T Consensus 8 ~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~ 69 (86)
T PF06013_consen 8 QLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEALEE 69 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555554432 223344545444444444444444443
No 176
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.98 E-value=1.8e+02 Score=23.81 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=14.1
Q ss_pred HhhHhHHHhhcchhhhhhhHHHHHH
Q 027611 160 QQRQSLLHAHNTLHGVDDNISKSKK 184 (221)
Q Consensus 160 ~Qre~l~~~~~~~~~i~~~l~~a~~ 184 (221)
..-.-+.+++.+++.....+...++
T Consensus 184 dl~~e~d~t~srl~~~~~~l~~v~~ 208 (235)
T KOG3202|consen 184 DLDNEMDRTESRLDRVMKRLAKVNR 208 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666555555554
No 177
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=43.88 E-value=1.6e+02 Score=23.37 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=42.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhc----C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 027611 35 KQKLSEIKTGLDDADALIRKMDLEARS----L-QPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGN 95 (221)
Q Consensus 35 ~~~~~~~~~~l~ea~~~l~~m~~E~~~----~-~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~~ 95 (221)
......+...+..+++.-..+-.||.. . .++-|..=..+++.-+..|..|-+.++++..++
T Consensus 77 ~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y~~~sLR~~S~~kL~~tr~~Y~~L~~aM~~Ae~km 142 (201)
T PF11172_consen 77 EDAAEEVSDRIDAVEDVADALFDEWEQELDQYSNASLRRASEQKLAETRRRYAQLIKAMRRAESKM 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556667777777777777666654 2 355566677888888888888888888776443
No 178
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=43.74 E-value=1.8e+02 Score=23.67 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027611 67 KAMLLSKLREYKTDLNNLKNEVKRVT 92 (221)
Q Consensus 67 r~~~~~k~~~~~~~l~~l~~~~~~~~ 92 (221)
+....+.+..++.+++.+.++.+...
T Consensus 115 k~~~~~ei~k~r~e~~~ml~evK~~~ 140 (230)
T PF03904_consen 115 KNIAQNEIKKVREENKSMLQEVKQSH 140 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666655543
No 179
>PHA02902 putative IMV membrane protein; Provisional
Probab=43.73 E-value=50 Score=21.09 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 027611 201 GSIISVLVFAILLILYFKLTR 221 (221)
Q Consensus 201 ~~ii~~l~~~i~~vl~~k~~~ 221 (221)
+.|.+++++++++++|.-+.|
T Consensus 6 fvi~~v~v~Ivclliya~YrR 26 (70)
T PHA02902 6 FVILAVIVIIFCLLIYAAYKR 26 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888776543
No 180
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=43.54 E-value=52 Score=18.43 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027611 201 GSIISVLVFAILLILYF 217 (221)
Q Consensus 201 ~~ii~~l~~~i~~vl~~ 217 (221)
+++++++++++.|--|+
T Consensus 19 ~GLllifvl~vLFssyf 35 (37)
T PF02419_consen 19 WGLLLIFVLAVLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 45666666666555544
No 181
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.12 E-value=4e+02 Score=27.61 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=8.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHH
Q 027611 39 SEIKTGLDDADALIRKMDLEA 59 (221)
Q Consensus 39 ~~~~~~l~ea~~~l~~m~~E~ 59 (221)
..++..|.++...+..+..++
T Consensus 884 ~~le~~L~el~~el~~l~~~~ 904 (1311)
T TIGR00606 884 QQFEEQLVELSTEVQSLIREI 904 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333
No 182
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=43.07 E-value=11 Score=31.49 Aligned_cols=18 Identities=17% Similarity=-0.020 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027611 198 WIMGSIISVLVFAILLIL 215 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl 215 (221)
+|+++.+++++++|++++
T Consensus 280 iil~IG~vl~i~~Ig~~i 297 (305)
T PF04639_consen 280 IILIIGGVLLIVFIGYFI 297 (305)
T ss_pred HHHHHHHHHHHHHhhhee
Confidence 334433333433344433
No 183
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=43.04 E-value=1.6e+02 Score=22.88 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=32.3
Q ss_pred HhhHHHHHHHHHHHHHHHhcCChhH--HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027611 42 KTGLDDADALIRKMDLEARSLQPNV--KAMLLSKLREYKTDLNNLKNEVKRVT 92 (221)
Q Consensus 42 ~~~l~ea~~~l~~m~~E~~~~~~~~--r~~~~~k~~~~~~~l~~l~~~~~~~~ 92 (221)
...-.+++...+.|+.|+..+.... -.....+.+..+.+...+..++....
T Consensus 112 ~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~ 164 (171)
T PF04799_consen 112 ARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQ 164 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666677777877766533 23456667777777777777776654
No 184
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=42.49 E-value=82 Score=19.51 Aligned_cols=39 Identities=13% Similarity=0.049 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 027611 48 ADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKN 86 (221)
Q Consensus 48 a~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~ 86 (221)
..++.+.+...++++|+..|..|.......+..+..-..
T Consensus 28 ~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~~ 66 (69)
T PF00505_consen 28 NKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEMP 66 (69)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677788999999998888777665555554333
No 185
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=42.21 E-value=29 Score=23.33 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 027611 200 MGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 200 l~~ii~~l~~~i~~vl~~k~~ 220 (221)
..+++.+++-+++++-|.|..
T Consensus 14 v~~iiaIvvW~iv~ieYrk~~ 34 (81)
T PF00558_consen 14 VALIIAIVVWTIVYIEYRKIK 34 (81)
T ss_dssp HHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566666544
No 186
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=42.19 E-value=83 Score=23.96 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027611 67 KAMLLSKLREYKTDLNNLKNEVKRVT 92 (221)
Q Consensus 67 r~~~~~k~~~~~~~l~~l~~~~~~~~ 92 (221)
+..+..++..|+.+.++++.+-..+.
T Consensus 68 ~~~~~~~i~~Y~~~~~~~~~e~~~l~ 93 (157)
T PF14235_consen 68 RAAYQKKIARYKKEKARYKSEAEELE 93 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999988888888766554
No 187
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=42.08 E-value=92 Score=19.92 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 027611 48 ADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNN 83 (221)
Q Consensus 48 a~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~ 83 (221)
..++...+-.+++.+++++|..|..+.+..+..+..
T Consensus 32 ~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~~ 67 (73)
T PF09011_consen 32 FREVMKEISERWKSLSEEEKEPYEERAKEDKERYER 67 (73)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 445666777888999999999999888766665543
No 188
>PRK10404 hypothetical protein; Provisional
Probab=41.97 E-value=1.2e+02 Score=21.24 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=25.2
Q ss_pred HHHhhcchhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 165 LLHAHNTLHGVDDNISK-SKKILTAMSRRMSRDKWIMGSIISVLVFAILLIL 215 (221)
Q Consensus 165 l~~~~~~~~~i~~~l~~-a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl 215 (221)
|..++.++.+....+.. ++........=+..|-|--++|.+.+.+++++++
T Consensus 47 L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw~avGiaagvGlllG~Ll 98 (101)
T PRK10404 47 LDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQGIGVGAAVGLVLGLLL 98 (101)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 33344444444333222 3444444444444566666676666666666554
No 189
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=41.91 E-value=2.1e+02 Score=24.06 Aligned_cols=61 Identities=16% Similarity=0.280 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027611 33 LKKQKLSEIKTGLDDADALIRKMDLEARSLQP-------------NVKAMLLSKLREYKTDLNNLKNEVKRVTS 93 (221)
Q Consensus 33 ~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~-------------~~r~~~~~k~~~~~~~l~~l~~~~~~~~~ 93 (221)
+|...++.++.+|++.++-+..=+.|+..+-. =.|-+.+--+++-|+++++|++-+...+.
T Consensus 65 QKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 65 QKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555566666666555555555555443321 11334455667778888888877776543
No 190
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=41.82 E-value=69 Score=18.40 Aligned_cols=25 Identities=12% Similarity=0.372 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCChhHH
Q 027611 43 TGLDDADALIRKMDLEARSLQPNVK 67 (221)
Q Consensus 43 ~~l~ea~~~l~~m~~E~~~~~~~~r 67 (221)
..+++++.++=.++.|++....+-+
T Consensus 4 ~~ieelkqll~rle~eirett~sl~ 28 (46)
T PF08181_consen 4 KKIEELKQLLWRLENEIRETTDSLR 28 (46)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777788888877665544
No 191
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=41.65 E-value=1.1e+02 Score=20.84 Aligned_cols=30 Identities=30% Similarity=0.446 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhc--CChhHHHHHHHHH
Q 027611 45 LDDADALIRKMDLEARS--LQPNVKAMLLSKL 74 (221)
Q Consensus 45 l~ea~~~l~~m~~E~~~--~~~~~r~~~~~k~ 74 (221)
+.++...+..+-..... ++++.+..+..++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 66 (105)
T PF12998_consen 35 LEELDQQIQKFIKNHGSPSLSPEKRRELLKEI 66 (105)
T ss_dssp HHHHHHHHHHHHTCTTS--S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccCChHHHHHHHHHH
Confidence 33344444433333333 3444444443433
No 192
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=41.57 E-value=1.2e+02 Score=21.19 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=9.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHh
Q 027611 39 SEIKTGLDDADALIRKMDLEAR 60 (221)
Q Consensus 39 ~~~~~~l~ea~~~l~~m~~E~~ 60 (221)
......|..+...++..+..+.
T Consensus 56 ~~Y~~Gl~~li~~id~a~~~~~ 77 (103)
T PF07361_consen 56 KDYQEGLDKLIDQIDKAEALAE 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 193
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=41.49 E-value=1.4e+02 Score=21.82 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 149 ELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVL 207 (221)
Q Consensus 149 ~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l 207 (221)
+...+++.--.+|...|..++.+++.+...+..--.-++.|-.-+++..+.+.+-|-++
T Consensus 73 el~ke~lkianeqn~~ln~vn~~l~~in~~l~~ylpkitsmls~vmkqny~lslqie~l 131 (177)
T PF12495_consen 73 ELSKEILKIANEQNQMLNNVNNQLNSINSMLNTYLPKITSMLSDVMKQNYVLSLQIEFL 131 (177)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 44455666667899999999999999999988888888889888888888776655443
No 194
>PRK11820 hypothetical protein; Provisional
Probab=41.27 E-value=1.8e+02 Score=24.51 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 027611 14 ELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREY 77 (221)
Q Consensus 14 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~ 77 (221)
.+..-+...+..+...-..+=..+...+...+..++..+..++..+...+...+..+..|++.+
T Consensus 130 ~l~~al~~AL~~l~~~R~~EG~~L~~dl~~rl~~i~~~~~~i~~~~p~~~~~~~~rL~~rl~el 193 (288)
T PRK11820 130 ALLAALDEALDDLIEMREREGAALKADLLQRLDAIEALVAKIEALAPEILEEYRERLRERLEEL 193 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 3344444444444332222223455556666666666666665555444445455555555544
No 195
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=41.27 E-value=43 Score=25.09 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 195 RDKWIMGSIISVLVFAILLILYFKL 219 (221)
Q Consensus 195 ~dk~il~~ii~~l~~~i~~vl~~k~ 219 (221)
--|.|+.++++++.+..++++|.+.
T Consensus 73 ewk~v~~~~~~~i~~s~~l~~~~r~ 97 (142)
T PF02936_consen 73 EWKKVFGGVFIFIGFSVLLFIWQRS 97 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457777777777777777777663
No 196
>MTH00158 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=41.13 E-value=60 Score=17.52 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027611 197 KWIMGSIISVLVFAILLILYFK 218 (221)
Q Consensus 197 k~il~~ii~~l~~~i~~vl~~k 218 (221)
.+++++++.+++.++...+|+.
T Consensus 9 W~~l~~~f~~~~~~~~~~~~f~ 30 (32)
T MTH00158 9 WLILFILFLITFILFNILNYFI 30 (32)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3455556666666666666653
No 197
>PTZ00046 rifin; Provisional
Probab=40.48 E-value=30 Score=30.02 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=9.3
Q ss_pred chhHHHHHHHHHHHH
Q 027611 2 SQVFEGYERQYCELS 16 (221)
Q Consensus 2 s~~f~~ye~e~~~~~ 16 (221)
|+.|++|++..+.--
T Consensus 69 sQRF~EYdERM~~kR 83 (358)
T PTZ00046 69 SQRFEEYDERMKEKR 83 (358)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777777665543
No 198
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=39.96 E-value=1.1e+02 Score=20.07 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=12.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhc
Q 027611 38 LSEIKTGLDDADALIRKMDLEARS 61 (221)
Q Consensus 38 ~~~~~~~l~ea~~~l~~m~~E~~~ 61 (221)
+..++.++..|-+.+..+..|+..
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~ee 29 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEE 29 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555543
No 199
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=39.84 E-value=1.7e+02 Score=22.47 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 027611 198 WIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
++-|++.+++.++-+++-|++|+
T Consensus 154 ~lr~~~g~i~~~~a~~la~~r~~ 176 (177)
T PF07798_consen 154 TLRWLVGVIFGCVALVLAILRLW 176 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56686655554444445555553
No 200
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=39.74 E-value=2.4e+02 Score=25.79 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 027611 77 YKTDLNNLKNEVK 89 (221)
Q Consensus 77 ~~~~l~~l~~~~~ 89 (221)
.+.+++.|+.++.
T Consensus 89 ae~d~~~~E~~i~ 101 (604)
T KOG3564|consen 89 AEADCEKLETQIQ 101 (604)
T ss_pred HhhhHHHHHHHHH
Confidence 3334444444433
No 201
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=39.66 E-value=33 Score=31.40 Aligned_cols=27 Identities=22% Similarity=0.606 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027611 194 SRDKWIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 194 ~~dk~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
....-+..+++.+++++++.++||+++
T Consensus 341 ~i~~gi~Agl~g~~~V~vfm~~~Yr~~ 367 (506)
T COG0342 341 SIKAGLIAGLIGLALVAVFMLLYYRLA 367 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567788888999999999999864
No 202
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=39.40 E-value=61 Score=19.67 Aligned_cols=6 Identities=50% Similarity=0.672 Sum_probs=2.4
Q ss_pred HHHHHH
Q 027611 211 ILLILY 216 (221)
Q Consensus 211 i~~vl~ 216 (221)
|+++-|
T Consensus 19 Igfity 24 (53)
T PF13131_consen 19 IGFITY 24 (53)
T ss_pred HHHHHH
Confidence 333333
No 203
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=39.39 E-value=1.2e+02 Score=20.38 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhHhHHHhhcchhhhhhhHHH
Q 027611 151 GVSILQDLHQQRQSLLHAHNTLHGVDDNISK 181 (221)
Q Consensus 151 g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~ 181 (221)
..++-.-++..++.+..++.++..++.-+..
T Consensus 46 ~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~ 76 (90)
T PF06103_consen 46 TKEINDLLHNTNELLEDVNEKLEKVDPVFEA 76 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3333344444444444444444444443333
No 204
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=39.18 E-value=34 Score=23.81 Aligned_cols=16 Identities=13% Similarity=0.065 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 027611 204 ISVLVFAILLILYFKL 219 (221)
Q Consensus 204 i~~l~~~i~~vl~~k~ 219 (221)
.+++..++++.||.+|
T Consensus 32 ~v~~~t~~~l~iYp~f 47 (97)
T PF04834_consen 32 LVFCSTFFSLAIYPCF 47 (97)
T ss_pred HHHHHHHHHHhhhhee
Confidence 3334455667777765
No 205
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=38.83 E-value=49 Score=24.55 Aligned_cols=23 Identities=9% Similarity=0.222 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027611 197 KWIMGSIISVLVFAILLILYFKL 219 (221)
Q Consensus 197 k~il~~ii~~l~~~i~~vl~~k~ 219 (221)
|.++.++++++.+.++++++.+.
T Consensus 75 k~v~~~~~~~i~~s~~~~~~~r~ 97 (136)
T cd00922 75 KTVFGGVLAFIGITGVIFGLQRA 97 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666554
No 206
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=38.83 E-value=3.4e+02 Score=25.59 Aligned_cols=55 Identities=18% Similarity=0.281 Sum_probs=28.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 37 KLSEIKTGLDDADALIRKMDLEARSLQP-NVKAMLLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 37 ~~~~~~~~l~ea~~~l~~m~~E~~~~~~-~~r~~~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
.+..+...+.+++.-+..++..+...|. ..-..+..++..+..++..++.++...
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~ 447 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEEL 447 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666554 223344455555555555554444443
No 207
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=38.60 E-value=73 Score=17.78 Aligned_cols=17 Identities=12% Similarity=0.024 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027611 194 SRDKWIMGSIISVLVFA 210 (221)
Q Consensus 194 ~~dk~il~~ii~~l~~~ 210 (221)
.+=|+..|.++++++.+
T Consensus 2 ~~LK~~Vy~vV~ffv~L 18 (36)
T PF02532_consen 2 LTLKIFVYTVVIFFVSL 18 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eEEEEeehhhHHHHHHH
Confidence 34466777665554433
No 208
>PF15202 Adipogenin: Adipogenin
Probab=38.58 E-value=65 Score=20.84 Aligned_cols=23 Identities=17% Similarity=0.376 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 027611 198 WIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
+++++.+-+-++.+++|+|++|.
T Consensus 17 lvfwlclpv~lllfl~ivwlrfl 39 (81)
T PF15202_consen 17 LVFWLCLPVGLLLFLLIVWLRFL 39 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455667787773
No 209
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=38.21 E-value=1.2e+02 Score=20.01 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 185 ILTAMSRRMSRDKWIMGSIISVLVFAILLI 214 (221)
Q Consensus 185 li~~m~rr~~~dk~il~~ii~~l~~~i~~v 214 (221)
.-..+.+|..+--+.|.+=+.|++++.++.
T Consensus 9 ~~~d~~~R~r~Y~i~M~~Ri~~fvlA~~~~ 38 (73)
T PF11298_consen 9 LSQDQRRRRRRYLIMMGIRIPCFVLAAVVY 38 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788777777777666666666555
No 210
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=38.13 E-value=35 Score=29.58 Aligned_cols=14 Identities=43% Similarity=0.572 Sum_probs=8.3
Q ss_pred chhHHHHHHHHHHH
Q 027611 2 SQVFEGYERQYCEL 15 (221)
Q Consensus 2 s~~f~~ye~e~~~~ 15 (221)
|+.|++|++..+.-
T Consensus 72 sQRF~EYdERM~~k 85 (353)
T TIGR01477 72 SQRFEEYDERMQEK 85 (353)
T ss_pred HHHHHhHHHHHHHh
Confidence 35677776665543
No 211
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=38.10 E-value=2.9e+02 Score=24.53 Aligned_cols=171 Identities=13% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCChhHHHH---HHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHhhccCccCccc
Q 027611 38 LSEIKTGLDDADALIRKMDLEARSLQPNVKAM---LLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMM 114 (221)
Q Consensus 38 ~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~---~~~k~~~~~~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~~~~~~~~ 114 (221)
+..+...+.+++.....++..+..+-...... +.+.+.+-+..++.|+.++..+..-. +.+-..|=..
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elH--q~Ei~~LKqe------- 284 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELH--QNEIYNLKQE------- 284 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-------
Q ss_pred CcHHHHHHHhhhhhHhhcchHHHHHHHHHHHHHH--HHHHHHHHHHHH---hhHhHHHhhcchhhhhhhHHHHHHHHHHH
Q 027611 115 VSADQRGRLLMSTERLNHSTDRIKESRRTMLETE--ELGVSILQDLHQ---QRQSLLHAHNTLHGVDDNISKSKKILTAM 189 (221)
Q Consensus 115 ~~~~~r~~ll~~~~~l~~~~~~L~~s~~~~~ete--~~g~~i~~~L~~---Qre~l~~~~~~~~~i~~~l~~a~~li~~m 189 (221)
-.......-.+..++..+-.+.++.++.-+.-.| +....+--+... .|.-|....+=+-.+-.-+=.--..+-.+
T Consensus 285 La~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q~e~~~n~~~r~~l~k~inllL~l~~vlLv~vSt~~~~ 364 (395)
T PF10267_consen 285 LASMEEKMAYQSYERARDIWEVMESCQTRISKLEQQQQQQVVQLEGTENSRARALLGKLINLLLTLLTVLLVFVSTVANC 364 (395)
T ss_pred HHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 190 SRRMSRDKWIMGSIISVLVFAILLILYFKL 219 (221)
Q Consensus 190 ~rr~~~dk~il~~ii~~l~~~i~~vl~~k~ 219 (221)
..=.+..++-++..++++++++ ++|.+|
T Consensus 365 ~~Pl~~tR~r~~~t~~~v~l~~--~~~~~w 392 (395)
T PF10267_consen 365 PLPLTRTRLRTLTTLLLVGLGA--ILWQNW 392 (395)
T ss_pred CcHHhhccHHHHHHHHHHHHHH--HHHhcc
No 212
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=37.98 E-value=37 Score=29.73 Aligned_cols=31 Identities=10% Similarity=0.135 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 188 AMSRRMSRDKWIMGSIISVLVFAILLILYFK 218 (221)
Q Consensus 188 ~m~rr~~~dk~il~~ii~~l~~~i~~vl~~k 218 (221)
.|.||..+...+=+++++.+++++++++|++
T Consensus 77 ~~~rrsvrEg~VGlfvL~gi~ll~~~~~~L~ 107 (370)
T PLN03094 77 GFGKRSVWEGGVGLFLLSGAALLALTLAWLR 107 (370)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4677888888777777777777777777764
No 213
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=37.52 E-value=54 Score=21.72 Aligned_cols=7 Identities=0% Similarity=0.377 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 027611 211 ILLILYF 217 (221)
Q Consensus 211 i~~vl~~ 217 (221)
++..+|.
T Consensus 16 fVap~WL 22 (75)
T PF06667_consen 16 FVAPIWL 22 (75)
T ss_pred HHHHHHH
Confidence 3333433
No 214
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=37.50 E-value=52 Score=19.31 Aligned_cols=9 Identities=11% Similarity=0.146 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 027611 201 GSIISVLVF 209 (221)
Q Consensus 201 ~~ii~~l~~ 209 (221)
|+.+++.++
T Consensus 27 ~~~~~~~~~ 35 (44)
T PF07835_consen 27 WGTIAIAAI 35 (44)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344333333
No 215
>MTH00261 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=37.43 E-value=85 Score=19.44 Aligned_cols=27 Identities=4% Similarity=0.271 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027611 194 SRDKWIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 194 ~~dk~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
.-|.....+...+++++++-+-||.||
T Consensus 9 y~nhyfvllllf~iliilisikfynff 35 (68)
T MTH00261 9 YFNHYFVLLLLFFILIILISIKFYNFF 35 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334443333333333333334444443
No 216
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=36.94 E-value=72 Score=17.25 Aligned_cols=14 Identities=36% Similarity=0.629 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 027611 205 SVLVFAILLILYFK 218 (221)
Q Consensus 205 ~~l~~~i~~vl~~k 218 (221)
+++-.++++++|.|
T Consensus 15 i~iPt~FLiilyvq 28 (31)
T PF05151_consen 15 ILIPTAFLIILYVQ 28 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhheEee
Confidence 33334455566654
No 217
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=36.84 E-value=71 Score=19.82 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027611 198 WIMGSIISVLVFAILLILYFKL 219 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~k~ 219 (221)
+|+.++++.++++.+++...+|
T Consensus 33 ~Ii~gii~~~~fV~~Lv~lV~~ 54 (56)
T PF11174_consen 33 FIIVGIILAALFVAGLVLLVNL 54 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555665555555555554444
No 218
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=36.84 E-value=1.3e+02 Score=22.00 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=37.2
Q ss_pred HhhHHHHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 42 KTGLDDADALIRKMDLEARSLQ-PNVKAMLLSKLREYKTDLNNLKNEVKR 90 (221)
Q Consensus 42 ~~~l~ea~~~l~~m~~E~~~~~-~~~r~~~~~k~~~~~~~l~~l~~~~~~ 90 (221)
+..|++.-+.+.++..-+.... ++.+..+..++..+-..|..+.+--..
T Consensus 2 e~~l~~~i~~l~el~~~v~d~~~~~s~~~L~~ki~~lv~~L~~l~~~~~~ 51 (128)
T PF09748_consen 2 EQQLEDVIQSLYELGVIVSDFQGPPSQEALNQKINQLVTSLQELDKLAQQ 51 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567777777888888888886 666778889988888877777655544
No 219
>PHA03240 envelope glycoprotein M; Provisional
Probab=36.74 E-value=37 Score=27.27 Aligned_cols=17 Identities=29% Similarity=0.782 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027611 198 WIMGSIISVLVFAILLI 214 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~v 214 (221)
||+.+||++.+|++++.
T Consensus 215 WIiilIIiIiIIIL~cf 231 (258)
T PHA03240 215 WIFIAIIIIIVIILFFF 231 (258)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555544444443
No 220
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=36.66 E-value=56 Score=32.28 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 184 KILTAMSRRMSRDKWIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 184 ~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~ 217 (221)
+.+..|-.+.++=.+|++++|+++++++++++|.
T Consensus 1060 K~~~~i~W~~yr~~il~~l~ililll~l~~fly~ 1093 (1105)
T KOG1326|consen 1060 KSFKFILWHRYRWYILLLLLILILLLLLALFLYS 1093 (1105)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567888888888888888888888777777774
No 221
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=36.64 E-value=1.7e+02 Score=21.37 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=12.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHH
Q 027611 183 KKILTAMSRRM-SRDKWIMGSIISV 206 (221)
Q Consensus 183 ~~li~~m~rr~-~~dk~il~~ii~~ 206 (221)
.+-++...||. ..++.|.++++.+
T Consensus 49 ~~el~~L~rR~~li~~ai~~~~~s~ 73 (130)
T PF11026_consen 49 RRELRILRRRARLIRRAITLATLSA 73 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677774 3444444443333
No 222
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=36.24 E-value=2.2e+02 Score=22.52 Aligned_cols=54 Identities=11% Similarity=0.188 Sum_probs=29.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 38 LSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 38 ~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
+.+.+..+..+.+.++.+.--+..-.-..|.++..++......+..-...+..+
T Consensus 91 lk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~L 144 (194)
T PF15619_consen 91 LKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQEL 144 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555444432222335667777777766666666666555
No 223
>CHL00038 psbL photosystem II protein L
Probab=36.00 E-value=70 Score=17.96 Aligned_cols=16 Identities=25% Similarity=0.519 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 027611 201 GSIISVLVFAILLILY 216 (221)
Q Consensus 201 ~~ii~~l~~~i~~vl~ 216 (221)
|+++++++++++|--|
T Consensus 20 ~GLLlifvl~vlfssy 35 (38)
T CHL00038 20 WGLLLIFVLAVLFSNY 35 (38)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555444
No 224
>PF01848 HOK_GEF: Hok/gef family; InterPro: IPR000021 The hok/gef family of Gram-negative bacterial proteins are toxic to cells when over-expressed, killing the cells from within by interfering with a vital function in the cell membrane []. Some family members (flm) increase the stability of unstable RNA [], some (pnd) induce the degradation of stable RNA at higher than optimum growth temperatures [], while others affect the release of cellular magnesium by membrane alterations []. The proteins are short (50-70 residues), consisting of an N-terminal hydrophobic (possibly membrane spanning) domain, and a C-terminal periplasmic region, which contains the toxic domain. The C-terminal region contains a conserved cysteine residue that mediates homo-dimerisation in the gef protein, although dimerisation is not necessary for the toxic effect [].; GO: 0016020 membrane
Probab=35.94 E-value=25 Score=20.63 Aligned_cols=17 Identities=6% Similarity=0.245 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027611 199 IMGSIISVLVFAILLIL 215 (221)
Q Consensus 199 il~~ii~~l~~~i~~vl 215 (221)
.+++++++|+.++++..
T Consensus 3 ~l~~liviCiTvl~~~~ 19 (43)
T PF01848_consen 3 ALLCLIVICITVLIFTW 19 (43)
T ss_pred eehhHHHHHHHHHHHHH
Confidence 34556666666555544
No 225
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.94 E-value=1.3e+02 Score=24.02 Aligned_cols=42 Identities=29% Similarity=0.388 Sum_probs=18.3
Q ss_pred HHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 027611 155 LQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDK 197 (221)
Q Consensus 155 ~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk 197 (221)
+.++..||+.|.+++.+.. +-..++.+-+-++.+.+.+--||
T Consensus 84 l~tie~Qr~alEnA~~n~E-vl~~m~~~A~AmK~~h~~mDiDk 125 (221)
T KOG1656|consen 84 LSTIEFQREALENANTNTE-VLDAMGSAAKAMKAAHKNMDIDK 125 (221)
T ss_pred HHHHHHHHHHHHcccccHH-HHHHHHHHHHHHHHHHhccChhH
Confidence 4444555555555444332 23334444444444444443333
No 226
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.85 E-value=2.4e+02 Score=22.95 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=14.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCChhH
Q 027611 37 KLSEIKTGLDDADALIRKMDLEARSLQPNV 66 (221)
Q Consensus 37 ~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~ 66 (221)
.+.++...|++++....++...+..++.+-
T Consensus 158 KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm 187 (230)
T cd07625 158 KVDEAIRQLEEATKHEHDLSLKLKRITGNM 187 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554444433
No 227
>KOG3443 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.79 E-value=2.1e+02 Score=22.15 Aligned_cols=51 Identities=22% Similarity=0.161 Sum_probs=39.4
Q ss_pred HHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 153 SILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSI 203 (221)
Q Consensus 153 ~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~i 203 (221)
+++.-.+.|+.-+.+....-.-+.+--..+.+.+..+.+|..+++..+..+
T Consensus 32 tv~~iI~aqkQml~rfektnemllNc~~l~~~rl~~as~r~l~H~~tL~em 82 (184)
T KOG3443|consen 32 TVLEIIHAQKQMLERFEKTNEMLLNCNKLSVKRLDLASERFLQHLITLTEM 82 (184)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556788888888888877777778888888889999988888776543
No 228
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=35.46 E-value=21 Score=28.45 Aligned_cols=24 Identities=21% Similarity=0.056 Sum_probs=13.6
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhcC
Q 027611 198 WIMGSIIS--VLVFAILLILYFKLTR 221 (221)
Q Consensus 198 ~il~~ii~--~l~~~i~~vl~~k~~~ 221 (221)
+|..++++ +|++++++.+|+.+-|
T Consensus 102 lI~lv~~g~~lLla~~~~~~Y~~~~R 127 (202)
T PF06365_consen 102 LIALVTSGSFLLLAILLGAGYCCHQR 127 (202)
T ss_pred EEehHHhhHHHHHHHHHHHHHHhhhh
Confidence 33344444 5666666666776654
No 229
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=35.33 E-value=2.4e+02 Score=25.65 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=23.4
Q ss_pred HHHHhhhhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 120 RGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQ 160 (221)
Q Consensus 120 r~~ll~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~ 160 (221)
.+.+.+....+.+++....-+.+.+.++.+-..+++.++-+
T Consensus 112 ~~G~~q~~~Sl~~an~tv~ti~~qv~~~~~~l~~~~~~~l~ 152 (526)
T KOG4433|consen 112 SDGLLQATYSLRHANHTVSTIDAQVSDTAEGLNNTAEQLLE 152 (526)
T ss_pred cchHHHHHHhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444455555566666666676666655555555544
No 230
>PHA02562 46 endonuclease subunit; Provisional
Probab=35.07 E-value=3.5e+02 Score=24.64 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=9.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhc
Q 027611 39 SEIKTGLDDADALIRKMDLEARS 61 (221)
Q Consensus 39 ~~~~~~l~ea~~~l~~m~~E~~~ 61 (221)
..++..+.++....+.++.++..
T Consensus 216 ~~l~~e~~~l~~~~~~l~~~l~~ 238 (562)
T PHA02562 216 ARKQNKYDELVEEAKTIKAEIEE 238 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 231
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=34.87 E-value=1.3e+02 Score=24.17 Aligned_cols=57 Identities=11% Similarity=0.123 Sum_probs=43.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027611 38 LSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (221)
Q Consensus 38 ~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~ 94 (221)
..+++.+++....-++.|+.-+..+..-....++.-...+++++..+-..|..+...
T Consensus 7 ~~~VE~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~KkEyqkiG~af~~Lsqa 63 (210)
T cd07668 7 LVEIEQKCEAVGRFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATV 63 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHH
Confidence 456888888888999999888887665544556666678888888888878776544
No 232
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=34.81 E-value=1.8e+02 Score=21.19 Aligned_cols=19 Identities=16% Similarity=0.136 Sum_probs=7.6
Q ss_pred HHhhHHHHHHHHHHHHHHH
Q 027611 41 IKTGLDDADALIRKMDLEA 59 (221)
Q Consensus 41 ~~~~l~ea~~~l~~m~~E~ 59 (221)
++..-..+...-..|+.|+
T Consensus 33 l~~q~~~a~~Aq~~YE~El 51 (132)
T PF07926_consen 33 LESQAKIAQEAQQKYEREL 51 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444
No 233
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=34.80 E-value=1.4e+02 Score=19.94 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027611 31 GELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (221)
Q Consensus 31 ~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~ 92 (221)
+.+-......++.+|+.|+..+..|..--++ -.++...++.++..+...+.-+.+++
T Consensus 23 ~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s-----~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 23 SKDLDTATGSLKHKLQKARAAIRELPGIDRS-----VEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccCC-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556667777777777777765541111 23456666666666666555555543
No 234
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=34.76 E-value=6.4e+02 Score=27.53 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=47.3
Q ss_pred HhhhhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHH
Q 027611 123 LLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSK 183 (221)
Q Consensus 123 ll~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~ 183 (221)
....++..++.+..+..=.+.+.|+++.+...+..++.-.-.+..+..+++...+.+..-+
T Consensus 1852 ~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~ele~a~erad~~e~~~~~lr 1912 (1930)
T KOG0161|consen 1852 IERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQRELEEAEERADTAESELNKLR 1912 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566778888899999999999999999998888777777777777776666665443
No 235
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=34.69 E-value=2.5e+02 Score=22.88 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 027611 198 WIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
|+++++-+++++++.+|-|-|+.
T Consensus 201 Wv~l~iG~iIi~tLtYvGwRKYr 223 (232)
T PF09577_consen 201 WVMLSIGGIIIATLTYVGWRKYR 223 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666777788887763
No 236
>PRK10884 SH3 domain-containing protein; Provisional
Probab=34.39 E-value=2.4e+02 Score=22.51 Aligned_cols=51 Identities=12% Similarity=-0.020 Sum_probs=29.0
Q ss_pred hhcchhhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 168 AHNTLHGVDDNISKSKKI---LTAMSRRMSRDKWIMGSIISVLVFAILLILYFK 218 (221)
Q Consensus 168 ~~~~~~~i~~~l~~a~~l---i~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~k 218 (221)
.......+...+..+..- ++.-....-.+...-|++.+..++++++++-.-
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGli 190 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLL 190 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 334444444444444433 344445555555566788888888888776553
No 237
>PF15339 Afaf: Acrosome formation-associated factor
Probab=34.32 E-value=1.3e+02 Score=23.43 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027611 190 SRRMSRDKWIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 190 ~rr~~~dk~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
.-+.+----+|.+++++.++++|+...||+.
T Consensus 129 KlkLmLGIsLmTl~lfv~Ll~~c~atlyklk 159 (200)
T PF15339_consen 129 KLKLMLGISLMTLFLFVILLAFCSATLYKLK 159 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445556666666667777777654
No 238
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=34.30 E-value=95 Score=20.27 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027611 189 MSRRMSRDKWIMGSIISVLVFAI 211 (221)
Q Consensus 189 m~rr~~~dk~il~~ii~~l~~~i 211 (221)
..||-.+.-+.+.+..+++++.|
T Consensus 9 Y~rrSr~~efLF~ilfIvlmipI 31 (72)
T PF13198_consen 9 YPRRSRKTEFLFFILFIVLMIPI 31 (72)
T ss_pred ccchhHHHHHHHHHHHHHHHHHH
Confidence 34454444444443333333333
No 239
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=34.28 E-value=2.2e+02 Score=21.94 Aligned_cols=24 Identities=13% Similarity=0.382 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 027611 69 MLLSKLREYKTDLNNLKNEVKRVT 92 (221)
Q Consensus 69 ~~~~k~~~~~~~l~~l~~~~~~~~ 92 (221)
.+..++...+..++.+.+++..+.
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554444443
No 240
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=34.26 E-value=17 Score=25.98 Aligned_cols=8 Identities=25% Similarity=0.791 Sum_probs=4.2
Q ss_pred HHHHHHHH
Q 027611 210 AILLILYF 217 (221)
Q Consensus 210 ~i~~vl~~ 217 (221)
.+|||||.
T Consensus 74 viffviy~ 81 (150)
T PF06084_consen 74 VIFFVIYS 81 (150)
T ss_pred HHhheeEe
Confidence 34556654
No 241
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=33.99 E-value=1.2e+02 Score=26.16 Aligned_cols=30 Identities=3% Similarity=0.114 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 027611 30 DGELKKQKLSEIKTGLDDADALIRKMDLEA 59 (221)
Q Consensus 30 ~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~ 59 (221)
.+.+..+.+++++..+.+++..+..|+..+
T Consensus 62 ~~~e~~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 62 LSAEERELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred CChhHHHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 345667889999999999999999999554
No 242
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=33.99 E-value=46 Score=25.05 Aligned_cols=10 Identities=20% Similarity=0.172 Sum_probs=6.0
Q ss_pred HHHHHHHHHH
Q 027611 193 MSRDKWIMGS 202 (221)
Q Consensus 193 ~~~dk~il~~ 202 (221)
-+.||+|+.+
T Consensus 116 gY~nklilai 125 (154)
T PF14914_consen 116 GYNNKLILAI 125 (154)
T ss_pred cccchhHHHH
Confidence 4556777753
No 243
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=33.86 E-value=1.4e+02 Score=19.59 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 64 PNVKAMLLSKLREYKTDLNNLKNEV 88 (221)
Q Consensus 64 ~~~r~~~~~k~~~~~~~l~~l~~~~ 88 (221)
+..|..++.|+.+|-..-+.+...+
T Consensus 46 ~~~k~~ir~K~~eYl~RAE~i~~~~ 70 (75)
T cd02677 46 PERREAVKRKIAEYLKRAEEILRLH 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777777777777665544
No 244
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=33.80 E-value=26 Score=20.37 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 027611 197 KWIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 197 k~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
.-++++++++++=.++.++|+-|-
T Consensus 21 ~k~~W~~~i~~~P~iG~i~Yl~~g 44 (46)
T PF13396_consen 21 SKILWLIVILFFPIIGPILYLIFG 44 (46)
T ss_pred hhhHHHHHHHHHHHHHHhheEEEe
Confidence 345677777778888888887543
No 245
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=33.75 E-value=4.6e+02 Score=25.54 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=7.9
Q ss_pred HHhhHHHHHHHHHHHHHHHh
Q 027611 41 IKTGLDDADALIRKMDLEAR 60 (221)
Q Consensus 41 ~~~~l~ea~~~l~~m~~E~~ 60 (221)
++....+++.....++.+..
T Consensus 534 ~~~~~~e~~~~~~~l~~~~~ 553 (771)
T TIGR01069 534 LEKLLKEQEKLKKELEQEME 553 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444433333
No 246
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=33.74 E-value=1.5e+02 Score=20.11 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=30.8
Q ss_pred hhHhHHHhhcchhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 027611 161 QRQSLLHAHNTLHGVDDNISKSKKILTAMS---RRMSRDKWIMGSIISV 206 (221)
Q Consensus 161 Qre~l~~~~~~~~~i~~~l~~a~~li~~m~---rr~~~dk~il~~ii~~ 206 (221)
-++.+..+..++......+.....-.+... |+..++++|--|.++=
T Consensus 6 l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~eRK~RtHRLi~rGa~lE 54 (86)
T PF12958_consen 6 LQAEIEKAEKKLEQAEHKIKQLENRKKKLEKKERKERTHRLIERGAILE 54 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344455555666666666666666666665 8999999998776654
No 247
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=33.66 E-value=2e+02 Score=21.45 Aligned_cols=61 Identities=20% Similarity=0.354 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHhhccCc
Q 027611 44 GLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGM 109 (221)
Q Consensus 44 ~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~~~ 109 (221)
.|..++.-...++.|++.--...-..|--++..++.++..|.+...... +.+|++|-.+|.
T Consensus 26 ~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~k~vq~yC-----eanrDELTe~GK 86 (170)
T COG4396 26 QIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLTKRVQAYC-----EANRDELTENGK 86 (170)
T ss_pred HHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHHHHHHHHH-----HhCHHHHhcCCC
Confidence 3444455555666666654455556788888888888888887776655 347999977664
No 248
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=33.61 E-value=1.4e+02 Score=23.96 Aligned_cols=57 Identities=18% Similarity=0.334 Sum_probs=43.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027611 38 LSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (221)
Q Consensus 38 ~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~ 94 (221)
..+++.+++....-++.|+.-+..+..-....++.-...+++++..+-..|..+...
T Consensus 7 ~~~Ve~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~kkEyqkiG~af~~Lsqa 63 (207)
T cd07669 7 LQDVEERVDVFKAFSKKMDDSVLQLSNVASELVRKHLGGFRKEFQKLGNAFQAISHS 63 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHH
Confidence 456888899999999999988887665444556666678888888888888776544
No 249
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=33.56 E-value=59 Score=21.49 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027611 201 GSIISVLVFAILLILYFKL 219 (221)
Q Consensus 201 ~~ii~~l~~~i~~vl~~k~ 219 (221)
+++++++++++.+|-.+|+
T Consensus 33 FV~~L~~fL~~liVRCfrI 51 (81)
T PF11057_consen 33 FVGLLCLFLGLLIVRCFRI 51 (81)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554
No 250
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=33.34 E-value=1.4e+02 Score=27.20 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 176 DDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 176 ~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~ 217 (221)
...+..+++..+.|..|+...++.-..++++++++++.+++|
T Consensus 242 ~~~lk~~dk~Ck~il~K~~~~~c~w~~l~llllvliaG~l~y 283 (469)
T PF10151_consen 242 DESLKECDKACKVILGKMSGSSCPWTRLLLLLLVLIAGFLAY 283 (469)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHH
Confidence 345677888999999998777755544434444444445554
No 251
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=33.29 E-value=3.6e+02 Score=25.14 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 027611 6 EGYERQYCELSAGLSRKCTAAS 27 (221)
Q Consensus 6 ~~ye~e~~~~~~~i~~~l~~~~ 27 (221)
+..+..++......+.....+|
T Consensus 167 ~~~~~~~k~~~~~w~~~~~~Lp 188 (555)
T TIGR03545 167 EEIEKSLKAMQQKWKKRKKDLP 188 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444444445555555554
No 252
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=33.17 E-value=2.7e+02 Score=22.65 Aligned_cols=53 Identities=13% Similarity=0.260 Sum_probs=29.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 36 QKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 36 ~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
..+......+..++..++.++.++..-+ .+....++...++.+..+++.+...
T Consensus 118 ~~~~~~~~~l~~l~~~l~~le~~~~~~~---~~~~~~~l~~l~~~l~~l~~~l~~~ 170 (292)
T PF01544_consen 118 EIVDDYFEVLEELEDELDELEDELDDRP---SNELLRELFDLRRELSRLRRSLSPL 170 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHTT---THHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccc---chhhHHHHHHHHHHHHHHHHHhhhH
Confidence 3445555566666666666666663322 2234455555666666666666543
No 253
>PF06394 Pepsin-I3: Pepsin inhibitor-3-like repeated domain; InterPro: IPR010480 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The members of this group of proteins belong to MEROPS inhibitor family I33, clan IR; the nematode aspartyl protease inhibitors or Aspins. They are restricted to parasitic nematode species. Structural features common to the nematode Aspins include the presence of a signal peptide sequence and the conservation of all four cysteine residues in the mature protein. The Y[V.A]RDLT sequence motif has been suggested as being of crucial functional importance in several filarial nematode inhibitors [], this sequence is not conserved in Tco-API-1 from Trichostrongylus colubriformis (Black scour worm) and it has been demonstrated that Tco-API-1, is not an Aspin as it does not inhibit porcine pepsin []. Related inhibitors from Onchocerca volvulus, Ov33 [] and Ascaris suum (Pig roundworm), PI-3 [] inhibit the in vitro activity of aspartyl proteases such as pepsin and cathepsin E (MEROPS peptidase family A1). Aspin may facilitate the safe passage of the eggs of Ascaris through the host stomach without digestion by pepsin [, ]. The other parasitic nematodes known to express homologous proteins do not pass through the stomach of their hosts []. Several proteins in the family are potent allergens in mammals. The three-dimensional structures of pepsin inhibitor-3 (PI-3) from A. suum and of the complex between PI-3 and porcine pepsin at 1. 75 A and 2.45 A resolution, respectively, have revealed the mechanism of aspartic protease inhibition. PI-3 has a new fold consisting of two identical domains, each comprising an antiparallel beta-sheet flanked by an alpha-helix. In the enzyme-inhibitor complex, the N-terminal beta-strand of PI-3 pairs with one strand of the 'active site flap' (residues 70-82) of pepsin, thus forming an eight-stranded beta-sheet that spans the two proteins. PI-3 has a novel mode of inhibition, using its N-terminal residues to occupy and therefore block the first three binding pockets in pepsin for substrate residues C-terminal to the scissile bond (S1'-S3') [].; PDB: 1F32_A 1F34_B.
Probab=33.12 E-value=49 Score=21.97 Aligned_cols=22 Identities=14% Similarity=0.395 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 027611 71 LSKLREYKTDLNNLKNEVKRVT 92 (221)
Q Consensus 71 ~~k~~~~~~~l~~l~~~~~~~~ 92 (221)
..+++.|.++++.++..+....
T Consensus 45 ~~eL~~y~~~v~~y~~~l~~~i 66 (76)
T PF06394_consen 45 QQELKTYQKKVAAYKEQLQQQI 66 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3667778888888888876654
No 254
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=33.08 E-value=71 Score=18.01 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 027611 201 GSIISVLVFAILLILY 216 (221)
Q Consensus 201 ~~ii~~l~~~i~~vl~ 216 (221)
|++++++++++.|--|
T Consensus 21 ~GlLlifvl~vLFssY 36 (39)
T PRK00753 21 LGLLLVFVLGILFSSY 36 (39)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4555555555554444
No 255
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=32.88 E-value=32 Score=29.14 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027611 201 GSIISVLVFAILLILYF 217 (221)
Q Consensus 201 ~~ii~~l~~~i~~vl~~ 217 (221)
+|+++..+++|++|.|+
T Consensus 277 VG~~La~lvlivLiaYl 293 (306)
T PF01299_consen 277 VGAALAGLVLIVLIAYL 293 (306)
T ss_pred HHHHHHHHHHHHHHhhe
Confidence 34444444444445554
No 256
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=32.74 E-value=35 Score=28.61 Aligned_cols=28 Identities=25% Similarity=0.231 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027611 193 MSRDKWIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 193 ~~~dk~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
-..+++.-+++++-.+++|+||.|+.|.
T Consensus 272 S~s~~l~piil~IG~vl~i~~Ig~~ifK 299 (305)
T PF04639_consen 272 SVSDSLLPIILIIGGVLLIVFIGYFIFK 299 (305)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhheeeE
Confidence 3456788888888888888888887664
No 257
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.62 E-value=4.2e+02 Score=24.73 Aligned_cols=9 Identities=0% Similarity=0.228 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 027611 183 KKILTAMSR 191 (221)
Q Consensus 183 ~~li~~m~r 191 (221)
++++.+|..
T Consensus 384 ~~l~~~i~l 392 (581)
T KOG0995|consen 384 NSLIRRIKL 392 (581)
T ss_pred HHHHHHHHH
Confidence 333333333
No 258
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=32.49 E-value=5.8e+02 Score=26.39 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=10.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHH
Q 027611 37 KLSEIKTGLDDADALIRKMDL 57 (221)
Q Consensus 37 ~~~~~~~~l~ea~~~l~~m~~ 57 (221)
....++...+++++++.++..
T Consensus 1462 s~~q~~~s~~el~~Li~~v~~ 1482 (1758)
T KOG0994|consen 1462 SRSQMEESNRELRNLIQQVRD 1482 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555443
No 259
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.28 E-value=48 Score=27.94 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=23.0
Q ss_pred HHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 165 LLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAIL 212 (221)
Q Consensus 165 l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~ 212 (221)
+..+.-++.+....|-+|. ...||-..=+||+.++++|++++++
T Consensus 255 vEqt~~~v~~a~keL~KAe----~yQk~~~k~~~i~~L~l~ii~llvl 298 (305)
T KOG0809|consen 255 VEQTQVRVEDALKELHKAE----RYQKRNKKMKVILMLTLLIIALLVL 298 (305)
T ss_pred hhhhhhhHHhHHHHHHHHH----HHHhcCCceEehHHHHHHHHHHHHH
Confidence 3444555555555566653 3455555556666555444444333
No 260
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=32.02 E-value=16 Score=22.73 Aligned_cols=8 Identities=25% Similarity=0.745 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 027611 210 AILLILYF 217 (221)
Q Consensus 210 ~i~~vl~~ 217 (221)
+|++++|+
T Consensus 44 ~Ivv~vy~ 51 (56)
T PF15012_consen 44 FIVVFVYL 51 (56)
T ss_pred HHhheeEE
Confidence 33344443
No 261
>PF10140 YukC: WXG100 protein secretion system (Wss), protein YukC; InterPro: IPR018778 Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This protein is designated YukC in Bacillus subtilis and EssB is Staphylococcus aureus. ; PDB: 4ANN_A.
Probab=32.00 E-value=15 Score=31.95 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027611 191 RRMSRDKWIMGSIISVLVFAILLILYFKLTR 221 (221)
Q Consensus 191 rr~~~dk~il~~ii~~l~~~i~~vl~~k~~~ 221 (221)
+|...-|++.+++++++++++++++|+-|+.
T Consensus 189 k~~k~~K~~~i~l~~l~v~l~~~~~Y~~f~~ 219 (359)
T PF10140_consen 189 KKWKIFKYASIGLSILLVLLLIPLGYLYFFK 219 (359)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566677888888888888888888887763
No 262
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=31.94 E-value=9.2 Score=30.84 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhcC
Q 027611 208 VFAILLILYFKLTR 221 (221)
Q Consensus 208 ~~~i~~vl~~k~~~ 221 (221)
+++.++..||||.|
T Consensus 171 l~gGGa~yYfK~~K 184 (218)
T PF14283_consen 171 LIGGGAYYYFKFYK 184 (218)
T ss_pred HhhcceEEEEEEec
Confidence 34445566777653
No 263
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=31.94 E-value=6e+02 Score=26.32 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=10.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhc
Q 027611 38 LSEIKTGLDDADALIRKMDLEARS 61 (221)
Q Consensus 38 ~~~~~~~l~ea~~~l~~m~~E~~~ 61 (221)
.+++++.=++|+....+++.-+..
T Consensus 1548 ~s~A~~a~~~A~~v~~~ae~V~ea 1571 (1758)
T KOG0994|consen 1548 QSEAERARSRAEDVKGQAEDVVEA 1571 (1758)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 264
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=31.90 E-value=3.9e+02 Score=24.18 Aligned_cols=76 Identities=11% Similarity=0.127 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 027611 3 QVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLN 82 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~ 82 (221)
.+|+.+...+......+...+...... -+...+..+..++..-..++..|. -.++..-+......|+
T Consensus 355 ~lwd~h~~~l~~~e~~l~~~l~~~r~~-----------~~~~~q~~E~~Ld~~~d~lRq~s~--ee~L~~~l~~~~~~Ld 421 (473)
T PF14643_consen 355 QLWDEHRKKLSKQEEELEKRLEQCREK-----------HDQENQEKEAKLDIALDRLRQASS--EEKLKEHLEKALDLLD 421 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHH
Confidence 456666666666666666655554321 122233333333333333443332 2344445555555555
Q ss_pred HHHHHHHHh
Q 027611 83 NLKNEVKRV 91 (221)
Q Consensus 83 ~l~~~~~~~ 91 (221)
.++..|+..
T Consensus 422 ~Ie~~Y~~f 430 (473)
T PF14643_consen 422 QIEEEYEDF 430 (473)
T ss_pred HHHHHHHHH
Confidence 555555443
No 265
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=31.43 E-value=1.2e+02 Score=20.49 Aligned_cols=12 Identities=8% Similarity=0.443 Sum_probs=4.5
Q ss_pred hhhHHHHHHHHH
Q 027611 176 DDNISKSKKILT 187 (221)
Q Consensus 176 ~~~l~~a~~li~ 187 (221)
+.-+.+-...++
T Consensus 23 ~qlVsrN~sfir 34 (84)
T PF06143_consen 23 EQLVSRNRSFIR 34 (84)
T ss_pred HHHHHhChHHHH
Confidence 333333333333
No 266
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=31.31 E-value=3.7e+02 Score=23.80 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027611 195 RDKWIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 195 ~dk~il~~ii~~l~~~i~~vl~~ 217 (221)
.-||+.+++++++.++++++..+
T Consensus 183 ~yRw~~~~~lL~l~l~icl~~l~ 205 (406)
T PF04906_consen 183 YYRWLAYLGLLILDLVICLLGLL 205 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466665555555555544443
No 267
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=31.21 E-value=3.3e+02 Score=23.19 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=18.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 56 DLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 56 ~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
..|+...++..=..++.++..+..++...++++..+
T Consensus 200 ~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el 235 (325)
T PF08317_consen 200 VEEIESCDQEELEALRQELAEQKEEIEAKKKELAEL 235 (325)
T ss_pred HhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555555555555555444
No 268
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=30.95 E-value=3e+02 Score=24.25 Aligned_cols=50 Identities=18% Similarity=0.313 Sum_probs=30.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 36 QKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKR 90 (221)
Q Consensus 36 ~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~ 90 (221)
..+..++..+.+++.-+..++..+...| +...++.++.+.+..+.+++..
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~-----k~~~k~~~~~~q~~~~~k~~~~ 291 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNP-----KKKNKLKELEEQLASLEKRIEE 291 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc-----chhhHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888777666 2234444444444444444433
No 269
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=30.92 E-value=1.5e+02 Score=20.18 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHHH
Q 027611 43 TGLDDADALIRKMDLEARS--LQPNVKAMLLSKLREYKTD 80 (221)
Q Consensus 43 ~~l~ea~~~l~~m~~E~~~--~~~~~r~~~~~k~~~~~~~ 80 (221)
.++..+.+++.-++.-..+ +++..+..+..-+++|+.+
T Consensus 7 tK~rni~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~y~~~ 46 (85)
T PF07240_consen 7 TKIRNIQELIAFYEKYSPRLPLTPQDRQRIDRFIRRYKEE 46 (85)
T ss_pred HHHhhHHHHHHHHHHcCccCCCCHHHHHHHHHHHHHHHHH
Confidence 4566777888888888887 4566666666666555543
No 270
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=30.90 E-value=1.6e+02 Score=19.29 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=12.4
Q ss_pred Cc-hhHHHHHHHHHHHHHHHHH
Q 027611 1 MS-QVFEGYERQYCELSAGLSR 21 (221)
Q Consensus 1 Ms-~~f~~ye~e~~~~~~~i~~ 21 (221)
|| ++|+..+.-+...++.|..
T Consensus 1 M~~E~l~~LE~ki~~aveti~~ 22 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIAL 22 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 44 5677777766666665554
No 271
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=30.66 E-value=3.2e+02 Score=22.83 Aligned_cols=55 Identities=13% Similarity=0.233 Sum_probs=37.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027611 37 KLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (221)
Q Consensus 37 ~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~ 92 (221)
....++..+..+...+.++...+.++.... ..+..|+..-+.+++..++.+..++
T Consensus 163 iE~~l~~ai~~~~~~~~~~~~~l~~l~~de-~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 163 IEKALKEAIKAVQQQLQQTQQQLNNLASDE-ANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666666666666655443 4688888888888888888887765
No 272
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=30.53 E-value=82 Score=23.67 Aligned_cols=23 Identities=9% Similarity=-0.013 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 027611 198 WIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
+.+++++++++++.++++.-+.|
T Consensus 122 ~~~i~g~ll~i~~giy~~~r~~~ 144 (145)
T PF10661_consen 122 LLSIGGILLAICGGIYVVLRKVW 144 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34443333333334445555554
No 273
>MTH00260 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=30.28 E-value=1.1e+02 Score=18.69 Aligned_cols=21 Identities=5% Similarity=0.053 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027611 197 KWIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 197 k~il~~ii~~l~~~i~~vl~~ 217 (221)
-+++++++.++++++...+|+
T Consensus 9 W~~l~~~f~~~~~~~~~~~~~ 29 (53)
T MTH00260 9 WLTAMIIFWFILLIFASSMWW 29 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555556665
No 274
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=30.14 E-value=1.8e+02 Score=22.69 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=22.5
Q ss_pred HhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 163 QSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMG 201 (221)
Q Consensus 163 e~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~ 201 (221)
+++.+++..+...+..+. +.++++.+.++.-..|..+.
T Consensus 3 ~~l~~is~aM~~l~~t~~-~~piL~~ie~~~~~~k~Y~~ 40 (186)
T COG5052 3 GQLVNISVAMLVLDNTLQ-AFPILREIENLYNRYKKYFM 40 (186)
T ss_pred hHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCcchhhHH
Confidence 345566666666665554 34567777777665554443
No 275
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=30.08 E-value=91 Score=28.84 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 193 MSRDKWIMGSIISVLVFAILLILYFK 218 (221)
Q Consensus 193 ~~~dk~il~~ii~~l~~~i~~vl~~k 218 (221)
...-+++.++++.++++++++++|++
T Consensus 521 ~~~~~~~~i~~pp~~~l~~G~~~~~~ 546 (552)
T TIGR03521 521 RTTWQLINIGLPILLLLLFGLSFTYI 546 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666667777788888864
No 276
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=30.07 E-value=2.8e+02 Score=21.94 Aligned_cols=23 Identities=13% Similarity=0.005 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh
Q 027611 4 VFEGYERQYCELSAGLSRKCTAA 26 (221)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~ 26 (221)
+++.|-.+...-+.++...+..+
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~ 49 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARV 49 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544443
No 277
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.07 E-value=1.8e+02 Score=23.29 Aligned_cols=57 Identities=16% Similarity=0.339 Sum_probs=43.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027611 38 LSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (221)
Q Consensus 38 ~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~ 94 (221)
..+++..++....-.+.|+.-|..+..-....++.-+..|++++..+-..|..+...
T Consensus 7 ~~~VE~kid~f~~F~k~Md~sv~~l~~~~~e~~kk~~~~~KkEyqkiG~af~~Lsqa 63 (207)
T cd07670 7 LQDVESRIDGFKAFTKKMDESVLQLNHTANEFARKQVTGFKKEYQKVGQSFKGLSQA 63 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 456888888888888899888887665545566677788888888888878776544
No 278
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=29.95 E-value=1.7e+02 Score=19.43 Aligned_cols=28 Identities=7% Similarity=0.176 Sum_probs=13.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCC
Q 027611 36 QKLSEIKTGLDDADALIRKMDLEARSLQ 63 (221)
Q Consensus 36 ~~~~~~~~~l~ea~~~l~~m~~E~~~~~ 63 (221)
..+..++..+..+.--+..+..+++.+.
T Consensus 17 ~vl~~LqDE~~hm~~e~~~L~~~~~~~d 44 (79)
T PF06657_consen 17 EVLKALQDEFGHMKMEHQELQDEYKQMD 44 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344455555555555555544444443
No 279
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=29.94 E-value=52 Score=28.19 Aligned_cols=10 Identities=20% Similarity=0.481 Sum_probs=4.4
Q ss_pred HHHHHHHHHh
Q 027611 210 AILLILYFKL 219 (221)
Q Consensus 210 ~i~~vl~~k~ 219 (221)
+|++|||..|
T Consensus 167 vla~ivY~~~ 176 (318)
T PF06682_consen 167 VLAFIVYSLF 176 (318)
T ss_pred HHHHHHHHHH
Confidence 3444555433
No 280
>PRK11281 hypothetical protein; Provisional
Probab=29.68 E-value=6.3e+02 Score=25.88 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=19.1
Q ss_pred HHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHH
Q 027611 155 LQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAM 189 (221)
Q Consensus 155 ~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m 189 (221)
...|..|.+.+.....+...+...++......+.+
T Consensus 291 s~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i 325 (1113)
T PRK11281 291 SQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNI 325 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566665555555555555555555554433
No 281
>PRK09458 pspB phage shock protein B; Provisional
Probab=29.63 E-value=81 Score=20.89 Aligned_cols=16 Identities=6% Similarity=0.212 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 027611 202 SIISVLVFAILLILYF 217 (221)
Q Consensus 202 ~ii~~l~~~i~~vl~~ 217 (221)
++-++++++++.-+|.
T Consensus 7 ~~PliiF~ifVaPiWL 22 (75)
T PRK09458 7 AIPLTIFVLFVAPIWL 22 (75)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 3333444444445554
No 282
>PF09815 XK-related: XK-related protein; InterPro: IPR018629 This entry is represented by the multipass membrane protein XK, which may be involved in sodium-dependent transport of neutral amino acids or oligopeptides. It forms a heterodimer with Kell. In humans, Kell is an 93kDa type II membrane glycoprotein with endothelin-3-converting enzyme activity that is linked by a single disulphide bond to XK, that spans the membrane ten times. An absence of XK leads to clinical symptoms termed the McLeod syndrome [MIM:314850], an X-linked multi-system disorder characterised by late onset abnormalities in the neuromuscular and hematopoietic systems [, ].
Probab=29.56 E-value=68 Score=27.44 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 027611 201 GSIISVLVFAILLILYFKLTR 221 (221)
Q Consensus 201 ~~ii~~l~~~i~~vl~~k~~~ 221 (221)
..++..++.+.+.++||+++|
T Consensus 310 ~v~~~~~lGi~~m~~YY~~~H 330 (332)
T PF09815_consen 310 VVLGGFLLGIAFMLLYYRFFH 330 (332)
T ss_pred HHHHHHHHHHHHHHHHHhhcC
Confidence 345566777778888998876
No 283
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=29.56 E-value=1.5e+02 Score=18.70 Aligned_cols=27 Identities=19% Similarity=0.061 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 191 RRMSRDKWIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 191 rr~~~dk~il~~ii~~l~~~i~~vl~~ 217 (221)
+.....-....++.++++.+|+++++.
T Consensus 29 ~~Ef~~ia~~~~iG~~i~G~iGf~Ikl 55 (61)
T PRK09400 29 REEFLLVAKVTGLGILLIGLIGFIIYL 55 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556666666777777765
No 284
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.33 E-value=6.1e+02 Score=25.63 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHhhccCccC
Q 027611 67 KAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMAD 111 (221)
Q Consensus 67 r~~~~~k~~~~~~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~~~~~ 111 (221)
+.++...+..|..+-..++.....+...+.=-.+-..+||...++
T Consensus 908 ~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~ 952 (1174)
T KOG0933|consen 908 RKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTD 952 (1174)
T ss_pred HHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCc
Confidence 455666666666666666666665554432112445788875443
No 285
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=29.12 E-value=42 Score=31.46 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhHhHH
Q 027611 151 GVSILQDLHQQRQSLL 166 (221)
Q Consensus 151 g~~i~~~L~~Qre~l~ 166 (221)
++.+|+.|..||-.|.
T Consensus 226 AA~~Ln~ld~Q~~Al~ 241 (684)
T PF12877_consen 226 AAKDLNLLDSQRMALI 241 (684)
T ss_pred HHHHHhccCHHHHHHh
Confidence 7778888888987764
No 286
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=28.85 E-value=1.3e+02 Score=22.90 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 183 KKILTAMSRRMSRDKWIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 183 ~~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~ 217 (221)
.-+.++|.||+ .+++++=.++.++.+.+.|+
T Consensus 55 ~~Vs~RM~rRm----~~~~GiP~~lG~~~f~~~y~ 85 (153)
T PF11947_consen 55 EVVSNRMLRRM----AVFVGIPTALGVAVFVVFYY 85 (153)
T ss_pred HHHHHHHHHHH----HHHhchHHHHHHHHHHHHHH
Confidence 34445555555 56677777777777666665
No 287
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=28.80 E-value=2.7e+02 Score=22.46 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 027611 46 DDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGN 95 (221)
Q Consensus 46 ~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~~ 95 (221)
..+......+...+..+.|..+..|....+.|.++++.+.+.++......
T Consensus 99 ~~~~~~~~~Ia~~L~~~~P~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~ 148 (256)
T PF01297_consen 99 ENAKKMAEAIADALSELDPANKDYYEKNAEKYLKELDELDAEIKEKLAKL 148 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444455555555555788888999999999999999999998765543
No 288
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=28.71 E-value=2.2e+02 Score=22.28 Aligned_cols=50 Identities=26% Similarity=0.324 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027611 45 LDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (221)
Q Consensus 45 l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~ 94 (221)
...+......+...+..+.|..+..|....+.|.++++.+.+.++.....
T Consensus 114 p~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~l~~ 163 (203)
T cd01145 114 PNNAPALAKALADALIELDPSEQEEYKENLRVFLAKLNKLLREWERQFEG 163 (203)
T ss_pred HHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455556666666666667778889999999999999999988765433
No 289
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=28.62 E-value=2e+02 Score=19.90 Aligned_cols=16 Identities=25% Similarity=0.190 Sum_probs=6.4
Q ss_pred HHhhHhHHHhhcchhh
Q 027611 159 HQQRQSLLHAHNTLHG 174 (221)
Q Consensus 159 ~~Qre~l~~~~~~~~~ 174 (221)
+.|-....+.+..++.
T Consensus 35 ~~qe~v~~kld~tlD~ 50 (98)
T PF11166_consen 35 HDQELVNQKLDRTLDE 50 (98)
T ss_pred hhHHHHHHHHHhhHHH
Confidence 3344444444444443
No 290
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=28.31 E-value=81 Score=21.26 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027611 196 DKWIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 196 dk~il~~ii~~l~~~i~~vl~~ 217 (221)
.-++++..++++++++++-+||
T Consensus 24 s~li~~~LilfviF~~~L~~yy 45 (83)
T PF05814_consen 24 SELIITLLILFVIFFCVLQVYY 45 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345554444444444444443
No 291
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.31 E-value=3.7e+02 Score=22.82 Aligned_cols=29 Identities=10% Similarity=0.219 Sum_probs=17.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcCC
Q 027611 35 KQKLSEIKTGLDDADALIRKMDLEARSLQ 63 (221)
Q Consensus 35 ~~~~~~~~~~l~ea~~~l~~m~~E~~~~~ 63 (221)
......+.+.=..++..|+.++.+....|
T Consensus 81 ~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~ 109 (297)
T KOG0810|consen 81 ESLVDEIRRRARKIKTKLKALEKENEADE 109 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35556666666666666666666654443
No 292
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=28.18 E-value=3.4e+02 Score=22.31 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027611 135 DRIKESRRTMLETEELGVSILQDLHQQR 162 (221)
Q Consensus 135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qr 162 (221)
+-++....++.+-.+.-..|-.++..=+
T Consensus 199 qLfndm~~~V~eq~e~Vd~I~~~~~~~~ 226 (280)
T COG5074 199 QLFNDMEELVIEQQENVDVIDKNVEDAQ 226 (280)
T ss_pred HHHHHHHHHHHhhcchHHHHHhhHhhHH
Confidence 3344455555555555455554444333
No 293
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=28.17 E-value=2.3e+02 Score=24.19 Aligned_cols=86 Identities=15% Similarity=0.210 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhhcch-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 027611 1 MSQVFEGYERQYCELSAGLSRKCTAASALDG-ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKT 79 (221)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~ 79 (221)
|..+.+.++.++.....+.+.-..=+..... .........++..++.++.--+.+..|+..+... +..+...+.....
T Consensus 7 ~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e-~~~l~~el~~le~ 85 (314)
T PF04111_consen 7 TDLLLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKE-REELDQELEELEE 85 (314)
T ss_dssp -----------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 027611 80 DLNNLKNE 87 (221)
Q Consensus 80 ~l~~l~~~ 87 (221)
+...+..+
T Consensus 86 e~~~l~~e 93 (314)
T PF04111_consen 86 ELEELDEE 93 (314)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 294
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=27.99 E-value=1.8e+02 Score=21.09 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027611 196 DKWIMGSIISVLVFAILLILYFK 218 (221)
Q Consensus 196 dk~il~~ii~~l~~~i~~vl~~k 218 (221)
.|++...+++..+++.++++|.+
T Consensus 37 EKvly~~~~va~L~vai~ii~~q 59 (120)
T COG4839 37 EKVLYTTLAVAALVVAISIISVQ 59 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666655555555555566553
No 295
>COG4640 Predicted membrane protein [Function unknown]
Probab=27.72 E-value=78 Score=27.95 Aligned_cols=15 Identities=13% Similarity=0.087 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 027611 195 RDKWIMGSIISVLVF 209 (221)
Q Consensus 195 ~dk~il~~ii~~l~~ 209 (221)
..++|.|..+++.+|
T Consensus 49 kK~ii~was~a~~lI 63 (465)
T COG4640 49 KKKIIPWASGAFILI 63 (465)
T ss_pred cceeehhHHHHHHHH
Confidence 344666654444333
No 296
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=27.71 E-value=64 Score=30.32 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027611 198 WIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~ 217 (221)
+|+++||+|+.++|.+++|-
T Consensus 395 ~~f~~if~iva~ii~~~L~R 414 (807)
T KOG1094|consen 395 IIFVAIFLIVALIIALMLWR 414 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666665
No 297
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=27.54 E-value=3.4e+02 Score=22.09 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027611 16 SAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (221)
Q Consensus 16 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~ 92 (221)
+.+|..+...+.. ....+..--..+++-+.+|..+.-|...+-.. |..+...++....|++.+...++.+.
T Consensus 3 i~~ir~K~~~lek-----~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~E-r~~h~eeLrqI~~DIn~lE~iIkqa~ 73 (230)
T PF10146_consen 3 IKEIRNKTLELEK-----LKNEILQEVESLENEEKCLEEYRKEMEELLQE-RMAHVEELRQINQDINTLENIIKQAE 73 (230)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
No 298
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=27.51 E-value=3.5e+02 Score=22.19 Aligned_cols=10 Identities=20% Similarity=0.494 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 027611 10 RQYCELSAGL 19 (221)
Q Consensus 10 ~e~~~~~~~i 19 (221)
.||...+..+
T Consensus 36 ~eya~~L~~~ 45 (237)
T cd07685 36 REYSGMLHHM 45 (237)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 299
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=27.48 E-value=2.1e+02 Score=19.57 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=38.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCC-----hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027611 37 KLSEIKTGLDDADALIRKMDLEARSLQ-----PNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (221)
Q Consensus 37 ~~~~~~~~l~ea~~~l~~m~~E~~~~~-----~~~r~~~~~k~~~~~~~l~~l~~~~~~~~ 92 (221)
.-.++...+..++.++..........+ ...+..+...+.....+|.+|.+.+.-..
T Consensus 6 v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive 66 (97)
T PF09177_consen 6 VKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVE 66 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888777666555 23345677777777777777777776653
No 300
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=27.46 E-value=1.5e+02 Score=17.87 Aligned_cols=43 Identities=7% Similarity=-0.001 Sum_probs=20.4
Q ss_pred HHHHHHHhhhhhh--cchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 027611 16 SAGLSRKCTAASA--LDGELKKQKLSEIKTGLDDADALIRKMDLE 58 (221)
Q Consensus 16 ~~~i~~~l~~~~~--~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E 58 (221)
+..+...+.++.+ .+-++-.....+.-..++.+...++..+..
T Consensus 5 ~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L~~~e~~ 49 (53)
T PF02609_consen 5 MERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQERLEEAEQK 49 (53)
T ss_dssp HHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555532 333444455555555555555555544443
No 301
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=27.43 E-value=6.9e+02 Score=25.60 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027611 71 LSKLREYKTDLNNLKNEVK 89 (221)
Q Consensus 71 ~~k~~~~~~~l~~l~~~~~ 89 (221)
..++......+..++..+.
T Consensus 214 ~~~~~~l~~~~~~Lq~~in 232 (1109)
T PRK10929 214 KKRSQQLDAYLQALRNQLN 232 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 302
>PRK15058 cytochrome b562; Provisional
Probab=27.21 E-value=2.6e+02 Score=20.60 Aligned_cols=18 Identities=6% Similarity=0.217 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027611 5 FEGYERQYCELSAGLSRK 22 (221)
Q Consensus 5 f~~ye~e~~~~~~~i~~~ 22 (221)
|.+|.+-|..++.+|+..
T Consensus 80 ~K~Y~~G~d~Li~qID~a 97 (128)
T PRK15058 80 MKDFRHGFDILVGQIDGA 97 (128)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 303
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=27.16 E-value=87 Score=22.42 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027611 198 WIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~ 217 (221)
+++.+.|++|++-+.+|-|.
T Consensus 62 lffvglii~LivSLaLVsFv 81 (128)
T PF15145_consen 62 LFFVGLIIVLIVSLALVSFV 81 (128)
T ss_pred ehHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 304
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=27.11 E-value=4.5e+02 Score=23.40 Aligned_cols=88 Identities=17% Similarity=0.244 Sum_probs=45.7
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHH--------HHHHHHHHHHH
Q 027611 131 NHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSR--------RMSRDKWIMGS 202 (221)
Q Consensus 131 ~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~r--------r~~~dk~il~~ 202 (221)
+.+-+++.....-+++||++=+ -.|...|.+|-...=.+.--.--+....-+..-++. ....-++++++
T Consensus 314 D~~~nk~~~Lre~IddTEd~In---I~LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMNl~~~l~~~~~~F~~vv~~ 390 (414)
T KOG2662|consen 314 DSTLNKLESLREYIDDTEDIIN---IQLDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMNLPSSLEEDHYAFKWVVGI 390 (414)
T ss_pred HHHHHHHHHHHHHhhhHHHHHH---HHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhccCCChhhhhHHH
Confidence 4455566666666677776543 467788888877666555444444443333322221 12334455555
Q ss_pred HHHHHHHHH-HHHHHHHhcC
Q 027611 203 IISVLVFAI-LLILYFKLTR 221 (221)
Q Consensus 203 ii~~l~~~i-~~vl~~k~~~ 221 (221)
.+++|++++ +++.|.||.|
T Consensus 391 ~~~~~~~lf~~i~~~~k~kr 410 (414)
T KOG2662|consen 391 TFTLCIVLFVVILGYAKLKR 410 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 444443333 3444556543
No 305
>cd00928 Cyt_c_Oxidase_VIIa Cytochrome c oxidase subunit VIIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIIa has two tissue-specific isoforms that are expressed in a developmental manner. VIIa-H is expressed in heart and skeletal muscle but not smooth muscle. VIIa-L is expressed in liver and non-muscle tissues.
Probab=27.11 E-value=1.5e+02 Score=18.40 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 194 SRDKWIMGSIISVLVFAILLILYFKL 219 (221)
Q Consensus 194 ~~dk~il~~ii~~l~~~i~~vl~~k~ 219 (221)
..|++..-+..++++++++..+|.-|
T Consensus 26 ~~D~~LYr~Tm~L~~vG~~~~~~~l~ 51 (55)
T cd00928 26 VVDRILYRLTMALTVVGTGYSLYLLY 51 (55)
T ss_pred chhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34666666778888888877777643
No 306
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=26.98 E-value=3.8e+02 Score=26.43 Aligned_cols=57 Identities=21% Similarity=0.344 Sum_probs=40.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhc------CChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 35 KQKLSEIKTGLDDADALIRKMDLEARS------LQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 35 ~~~~~~~~~~l~ea~~~l~~m~~E~~~------~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
.+.+..+++.++.++.-+...+.-+.+ .|+.....-+.|+..+..++..++..+..+
T Consensus 810 ~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l 872 (874)
T PRK05729 810 EAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARL 872 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556667777777776666665543 567777778888888888888888877654
No 307
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=26.67 E-value=3e+02 Score=21.20 Aligned_cols=55 Identities=9% Similarity=0.119 Sum_probs=34.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027611 40 EIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (221)
Q Consensus 40 ~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~ 94 (221)
+-..-...+...+...+..+...++..+..+...+..+...+..|...+..+...
T Consensus 113 ~hqe~erRL~~mi~~~e~~l~~~~~~~~~~lq~ei~a~e~RL~RCr~Ai~~iE~~ 167 (173)
T PF07445_consen 113 QHQEYERRLLAMIQEREQQLEQAQSFEQQQLQQEILALEQRLQRCRQAIEKIEEQ 167 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555666666666667777777777777777777766665443
No 308
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.65 E-value=4.7e+02 Score=23.47 Aligned_cols=45 Identities=16% Similarity=0.330 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHH
Q 027611 141 RRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKI 185 (221)
Q Consensus 141 ~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~l 185 (221)
..++-++-..|..++.....|--.-.++++-++++...+++.+.+
T Consensus 312 nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV 356 (439)
T KOG2911|consen 312 NKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEV 356 (439)
T ss_pred cHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHH
Confidence 456666677777777777776655666666666666666665443
No 309
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=26.54 E-value=1.8e+02 Score=20.05 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 027611 182 SKKILTAMSRRMSRDKWIMGSIISV-LVFAILLILYFKL 219 (221)
Q Consensus 182 a~~li~~m~rr~~~dk~il~~ii~~-l~~~i~~vl~~k~ 219 (221)
...-+++|..=+.+||..+.++-++ -++.|+..+|.-|
T Consensus 54 ~~~k~k~~~~FV~RNk~W~T~~S~~tS~isIL~LV~~~~ 92 (100)
T PF06363_consen 54 VKNKMKSMLSFVERNKAWFTVVSAVTSFISILLLVTKIF 92 (100)
T ss_pred HHHHHHHHHHHHHHcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 3445677777788899777544443 3333444444433
No 310
>PRK02913 hypothetical protein; Provisional
Probab=26.32 E-value=44 Score=25.15 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027611 190 SRRMSRDKWIMGSIISV 206 (221)
Q Consensus 190 ~rr~~~dk~il~~ii~~ 206 (221)
.||..-|.+|+.++|++
T Consensus 38 krr~r~Da~IFi~LI~I 54 (150)
T PRK02913 38 KRRGRIDSLIFVGLIAI 54 (150)
T ss_pred eeccccceehHHHHHHH
Confidence 34555666666655554
No 311
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=26.32 E-value=2.7e+02 Score=20.55 Aligned_cols=17 Identities=12% Similarity=0.305 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhhhh
Q 027611 10 RQYCELSAGLSRKCTAA 26 (221)
Q Consensus 10 ~e~~~~~~~i~~~l~~~ 26 (221)
.+|+.....+...++.+
T Consensus 43 ~~f~~~~~~~~~~L~~v 59 (142)
T PF04048_consen 43 QEFEELKKRIEKALQEV 59 (142)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 312
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.25 E-value=6.9e+02 Score=25.24 Aligned_cols=24 Identities=4% Similarity=0.214 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Q 027611 34 KKQKLSEIKTGLDDADALIRKMDL 57 (221)
Q Consensus 34 ~~~~~~~~~~~l~ea~~~l~~m~~ 57 (221)
+......++..+.+++..+..|..
T Consensus 263 ~~d~~~~~~~~i~ele~~l~~l~~ 286 (1200)
T KOG0964|consen 263 VEDESEDLKCEIKELENKLTNLRE 286 (1200)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334455555555555555555544
No 313
>PRK11281 hypothetical protein; Provisional
Probab=26.14 E-value=7.2e+02 Score=25.45 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 027611 69 MLLSKLREYKTDLNNLKNEVKRVT 92 (221)
Q Consensus 69 ~~~~k~~~~~~~l~~l~~~~~~~~ 92 (221)
.+++++..+-+++.+..+++.+++
T Consensus 84 ~L~k~l~~Ap~~l~~a~~~Le~Lk 107 (1113)
T PRK11281 84 QLKQQLAQAPAKLRQAQAELEALK 107 (1113)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhh
Confidence 455666666666666666655443
No 314
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=26.12 E-value=69 Score=18.76 Aligned_cols=19 Identities=21% Similarity=0.086 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027611 201 GSIISVLVFAILLILYFKL 219 (221)
Q Consensus 201 ~~ii~~l~~~i~~vl~~k~ 219 (221)
++|.++|+.+.++-+|.-|
T Consensus 9 i~i~~~lv~~Tgy~iYtaF 27 (43)
T PF02468_consen 9 IFISCLLVSITGYAIYTAF 27 (43)
T ss_pred HHHHHHHHHHHhhhhhhee
Confidence 3444455555556666554
No 315
>KOG4075 consensus Cytochrome c oxidase, subunit IV/COX5b [Energy production and conversion]
Probab=25.83 E-value=77 Score=24.35 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 188 AMSRRMSRDKWIMGSIISVLVFAILLILYFKL 219 (221)
Q Consensus 188 ~m~rr~~~dk~il~~ii~~l~~~i~~vl~~k~ 219 (221)
.|.+..-.-|.++.+..+++.++|.+++|.+.
T Consensus 91 e~~~~~~ewKtv~g~~~~f~Gl~~~v~l~~~v 122 (167)
T KOG4075|consen 91 ERNRGSNEWKTVFGVAGFFLGLTISVILFGKV 122 (167)
T ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHHHhh
Confidence 34444455567777788888888888887654
No 316
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=25.75 E-value=1.9e+02 Score=18.58 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027611 70 LLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 70 ~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
+..++.+...+++.++...+++
T Consensus 32 ~e~~i~~~~~~l~~I~~n~kW~ 53 (71)
T PF10779_consen 32 NEKDIKNLNKQLEKIKSNTKWI 53 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666677776666664
No 317
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=25.71 E-value=98 Score=17.21 Aligned_cols=9 Identities=44% Similarity=0.833 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 027611 209 FAILLILYF 217 (221)
Q Consensus 209 ~~i~~vl~~ 217 (221)
.++.+++|.
T Consensus 19 t~FLlilYv 27 (35)
T PRK04989 19 TVFLIILYI 27 (35)
T ss_pred HHHHHHHhe
Confidence 344455554
No 318
>PF12008 EcoR124_C: Type I restriction and modification enzyme - subunit R C terminal; InterPro: IPR022625 EcoR124 is made up of three subunits, HsdR, HsdS and HsdM. The R subunit has ATPase and restriction endonuclease activity. The enzyme has been characterised and shown to belong to a new family of the type I class of restriction and modification enzymes. These enzymes are involved in bacterial defence by making double strand breaks in specific double stranded DNA sequences, e.g. that of invading bacteriophages. This entry represents the domain found in the C terminus of Type I restriction and modification enzymes. The domain is found in association with PF04851 from PFAM and PF04313 from PFAM. []. ; PDB: 2Y3T_B 2W74_B 3EVY_B 2W00_B.
Probab=25.59 E-value=2.2e+02 Score=23.20 Aligned_cols=88 Identities=14% Similarity=0.236 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHh---hhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHH-HHHHHHHHHH
Q 027611 3 QVFEGYERQYCELSAGLSRKC---TAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKA-MLLSKLREYK 78 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l---~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~-~~~~k~~~~~ 78 (221)
.-|+.|.++|+..+.++.... +.+....+++.+..+-.+-..+..+.+.++++.- ... +...-. --...+..|+
T Consensus 5 ~~y~e~~~~f~~~v~~L~~~~~~~~~~~~l~~e~~~~~Fvk~F~~~~~~~~~lk~y~e-fd~-d~~~~~~~~~~~~~dy~ 82 (270)
T PF12008_consen 5 PSYEEYKEEFKEAVEELKEIFPTPGDFDDLESEEEQKEFVKLFRELNRLLNALKQYDE-FDE-DDEELGFLSEQEFEDYQ 82 (270)
T ss_dssp -HHHHHHHHEEHHHHHHHHH--SSHHHCTS-SHHHHHHHHHHHHHHHHHHHHHTTSHH-HH---HHHHHHS-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCccchhccCCHHHHHHHHHHHHHHHHHHHHHhccch-hcc-chhhhcccchhHHHHHH
Confidence 458889999999999988877 3344444555555566666666666666666654 321 100000 1234456666
Q ss_pred HHHHHHHHHHHHhh
Q 027611 79 TDLNNLKNEVKRVT 92 (221)
Q Consensus 79 ~~l~~l~~~~~~~~ 92 (221)
..+..+..+++...
T Consensus 83 ~~Y~~l~~~~k~~~ 96 (270)
T PF12008_consen 83 SKYLDLYDELKEER 96 (270)
T ss_dssp HHHHHHHHCHCHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 66777766666544
No 319
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=25.21 E-value=2.3e+02 Score=19.35 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=8.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH
Q 027611 38 LSEIKTGLDDADALIRKMDLEA 59 (221)
Q Consensus 38 ~~~~~~~l~ea~~~l~~m~~E~ 59 (221)
+.++...-.++....-.+-.++
T Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~ 114 (125)
T PF13801_consen 93 LEEIREAQAELRQERLEHLLEI 114 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 320
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=25.07 E-value=53 Score=28.30 Aligned_cols=11 Identities=45% Similarity=0.881 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 027611 192 RMSRDKWIMGS 202 (221)
Q Consensus 192 r~~~dk~il~~ 202 (221)
+...+.+++.+
T Consensus 106 ~~~~~~~~~~~ 116 (331)
T PRK10856 106 RKKRDGWLMTF 116 (331)
T ss_pred ccccCCchHHH
Confidence 33344444433
No 321
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=24.96 E-value=1.9e+02 Score=18.30 Aligned_cols=43 Identities=14% Similarity=0.025 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 176 DDNISKSKKILTAM---SRRMSRDKWIMGSIISVLVFAILLILYFK 218 (221)
Q Consensus 176 ~~~l~~a~~li~~m---~rr~~~dk~il~~ii~~l~~~i~~vl~~k 218 (221)
.+-+..+.++++.= .|.....-....++-++++.+++++++.-
T Consensus 7 ~~f~k~~~r~lk~~~KPd~~Ef~~iak~t~iG~~i~G~IGf~Ikli 52 (61)
T TIGR00327 7 VEFIKEGTRVLAVCKKPDLEEYLKVAKVTGIGIIIVGIIGYIIKII 52 (61)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444332 33445554555566666777777777653
No 322
>PRK14082 hypothetical protein; Provisional
Probab=24.94 E-value=2e+02 Score=18.47 Aligned_cols=41 Identities=12% Similarity=0.032 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhhh-hhhcchHHHHHHHHHHHhhHHH
Q 027611 7 GYERQYCELSAGLSRKCTA-ASALDGELKKQKLSEIKTGLDD 47 (221)
Q Consensus 7 ~ye~e~~~~~~~i~~~l~~-~~~~~~~~~~~~~~~~~~~l~e 47 (221)
+++.++..+++.+.-++.+ +..++..+|..+.++++-++-+
T Consensus 6 ~~~~e~e~ii~~FepkIkKsL~~T~yqeREDLeQElk~Ki~e 47 (65)
T PRK14082 6 DDTEEIEHLIENFSPMIKKKLSNTSYQEREDLEQELKIKIIE 47 (65)
T ss_pred hhHHHHHHHHHHccHHHHHHHhcCChhhHHHHHHHHHHHHHH
Confidence 4666777777777776655 5667777887777777665544
No 323
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=24.83 E-value=3.6e+02 Score=21.51 Aligned_cols=46 Identities=24% Similarity=0.256 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 027611 32 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTD 80 (221)
Q Consensus 32 ~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~ 80 (221)
.++.....+++....++..+-..+..|. ..+.+-++..++++.+++
T Consensus 175 ~~~~~~~~~i~~L~kei~~L~~~~~kEk---q~nrkveln~elk~l~~e 220 (221)
T PF14335_consen 175 WERIERLEQIEKLEKEIAKLKKKIKKEK---QFNRKVELNTELKKLKKE 220 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHhc
Confidence 4444445444444444444444443332 356666777777666554
No 324
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=24.83 E-value=1e+02 Score=15.09 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027611 202 SIISVLVFAILLILYFKL 219 (221)
Q Consensus 202 ~ii~~l~~~i~~vl~~k~ 219 (221)
.+|+=+++++++.++-+|
T Consensus 3 ~iIaPi~VGvvl~l~~~w 20 (21)
T PF13955_consen 3 TIIAPIVVGVVLTLFDHW 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHHhh
Confidence 345556666666666665
No 325
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=24.59 E-value=3e+02 Score=20.43 Aligned_cols=92 Identities=10% Similarity=0.122 Sum_probs=54.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhhc------chHH------H-H-------------HHHHHHHhhHHH----HHH
Q 027611 1 MSQVFEGYERQYCELSAGLSRKCTAASAL------DGEL------K-K-------------QKLSEIKTGLDD----ADA 50 (221)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~------~~~~------~-~-------------~~~~~~~~~l~e----a~~ 50 (221)
|++..-..-+.+..+...+.+.++-+... ++.. . . ..-...+..+.+ +-.
T Consensus 1 M~DrlTQLQd~ldqL~~~f~~si~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elA~dIi~ 80 (144)
T PF11221_consen 1 MADRLTQLQDCLDQLAEQFCNSIGYLQRDAPPSPLSPNDPSISDPKPQAPPQQQQQAEPAPDPPEEFEENIKELATDIIR 80 (144)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGG-----------------------------HHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccccCccccchhhhhhhhcccCCChhhHHHHHHHHHHHHHH
Confidence 77888888888888888888877776321 1111 0 0 012233344444 334
Q ss_pred HHHHHHHHHhcCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027611 51 LIRKMDLEARSLQP--NVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (221)
Q Consensus 51 ~l~~m~~E~~~~~~--~~r~~~~~k~~~~~~~l~~l~~~~~~~~ 92 (221)
.-++++..+.++|+ ..-..-..+++....+++....++....
T Consensus 81 kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v 124 (144)
T PF11221_consen 81 KAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAV 124 (144)
T ss_dssp HHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578888899996 2233445888888888888888887654
No 326
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=24.51 E-value=2.7e+02 Score=19.90 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhH----HHHHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 34 KKQKLSEIKTGL----DDADALIRKMDLEARS--LQPNVKAMLLSKLREYKTDLNNLKNEVKR 90 (221)
Q Consensus 34 ~~~~~~~~~~~l----~ea~~~l~~m~~E~~~--~~~~~r~~~~~k~~~~~~~l~~l~~~~~~ 90 (221)
|-..+.+++..| +.|..++..+--.-.. -|+..+..+.....+|-..++.....+++
T Consensus 4 RL~~L~~Idk~I~~lL~~A~~ai~~Ls~~~~~~~~~~~~k~~f~~~~~~f~~~L~~V~~~Lr~ 66 (117)
T PF10280_consen 4 RLQQLNEIDKKIVSLLQHAGQAIQELSNPKSPDQDPESSKEAFESATSEFFSTLSSVEVELRR 66 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555544 4444444444333221 12335667777788888888776666654
No 327
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=24.50 E-value=66 Score=20.25 Aligned_cols=9 Identities=22% Similarity=0.276 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q 027611 195 RDKWIMGSI 203 (221)
Q Consensus 195 ~dk~il~~i 203 (221)
.+|+|++..
T Consensus 2 A~Kl~vial 10 (65)
T PF10731_consen 2 ASKLIVIAL 10 (65)
T ss_pred cchhhHHHH
Confidence 356555433
No 328
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=24.39 E-value=2.2e+02 Score=19.09 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027611 183 KKILTAMSRRMSRDKWIMGS 202 (221)
Q Consensus 183 ~~li~~m~rr~~~dk~il~~ 202 (221)
.+.-+.|.++...+|.+++.
T Consensus 40 k~~d~~i~kK~k~kK~iiiS 59 (84)
T PF09716_consen 40 KKIDDKIEKKKKNKKKIIIS 59 (84)
T ss_pred hhhhHHHHHHHhccchhhHH
Confidence 34447778887777877753
No 329
>PTZ00464 SNF-7-like protein; Provisional
Probab=24.37 E-value=3.7e+02 Score=21.51 Aligned_cols=47 Identities=9% Similarity=0.138 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHH
Q 027611 143 TMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMS 190 (221)
Q Consensus 143 ~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~ 190 (221)
.+.++-..|..++..++.+= .+..+.+-++++...+..++.+=..|+
T Consensus 102 ~vv~amk~g~kaLK~~~k~i-~id~Vd~l~Dei~E~~e~~~EI~e~Ls 148 (211)
T PTZ00464 102 VQVDAMKQAAKTLKKQFKKL-NVDKVEDLQDELADLYEDTQEIQEIMG 148 (211)
T ss_pred HHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666666665 566666666666666666655444443
No 330
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=24.31 E-value=82 Score=30.41 Aligned_cols=20 Identities=15% Similarity=0.462 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027611 198 WIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~ 217 (221)
.||.++++++++++++++||
T Consensus 277 ~ILG~~~livl~lL~vLl~y 296 (807)
T PF10577_consen 277 AILGGTALIVLILLCVLLCY 296 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45555666666666666665
No 331
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=24.19 E-value=1.6e+02 Score=17.30 Aligned_cols=13 Identities=31% Similarity=0.330 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHh
Q 027611 207 LVFAILLILYFKL 219 (221)
Q Consensus 207 l~~~i~~vl~~k~ 219 (221)
++.-|++.+|-|+
T Consensus 17 If~~iGl~IyQki 29 (49)
T PF11044_consen 17 IFAWIGLSIYQKI 29 (49)
T ss_pred HHHHHHHHHHHHH
Confidence 3344666777654
No 332
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=24.14 E-value=5.2e+02 Score=23.10 Aligned_cols=20 Identities=40% Similarity=0.569 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027611 71 LSKLREYKTDLNNLKNEVKR 90 (221)
Q Consensus 71 ~~k~~~~~~~l~~l~~~~~~ 90 (221)
......+.+.++.++.++..
T Consensus 381 ~~~~~~l~~~~~~l~~~~~~ 400 (451)
T PF03961_consen 381 KEKKKELKEELKELKEELKE 400 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 333
>MTH00147 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=24.12 E-value=1.7e+02 Score=17.66 Aligned_cols=21 Identities=10% Similarity=0.172 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027611 197 KWIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 197 k~il~~ii~~l~~~i~~vl~~ 217 (221)
-+++++++.++++.+...+|+
T Consensus 9 W~~l~~~~~~~~~~~~~~~~~ 29 (51)
T MTH00147 9 WIFLFILFWSAVIIVSVIIWW 29 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555556665
No 334
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=23.99 E-value=1e+02 Score=21.47 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 027611 200 MGSIISVLVFAILLI 214 (221)
Q Consensus 200 l~~ii~~l~~~i~~v 214 (221)
+.+++++++++++++
T Consensus 28 ~~gilillLllifav 42 (98)
T COG5416 28 IVGILILLLLLIFAV 42 (98)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 335
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.98 E-value=3.4e+02 Score=20.88 Aligned_cols=18 Identities=17% Similarity=0.459 Sum_probs=6.8
Q ss_pred HHHHhhHHHHHHHHHHHH
Q 027611 39 SEIKTGLDDADALIRKMD 56 (221)
Q Consensus 39 ~~~~~~l~ea~~~l~~m~ 56 (221)
..++..+.+++..+....
T Consensus 148 ~~l~~~i~~~e~~~~~~~ 165 (218)
T cd07596 148 EELEEELEEAESALEEAR 165 (218)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 336
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=23.94 E-value=2.9e+02 Score=22.62 Aligned_cols=60 Identities=7% Similarity=0.216 Sum_probs=43.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027611 35 KQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (221)
Q Consensus 35 ~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~ 94 (221)
.....+++..++......+.|+.-++.+........+.-...|++++..+-..|..+...
T Consensus 33 ~ld~~~ve~~~e~f~~F~k~Md~sv~~l~~~~~~~~kk~~~~~kkE~qkiG~af~~Ls~a 92 (237)
T PF10456_consen 33 PLDPQDVESQVESFKKFTKSMDDSVKQLSSVANEFAKKHQGPFKKEYQKIGQAFQSLSQA 92 (237)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHH
Confidence 344677888899999999999988887665444344445578899999998888877544
No 337
>PF00895 ATP-synt_8: ATP synthase protein 8; InterPro: IPR001421 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 found in the F0 complex of mitochondrial F-ATPases from Metazoa. This subunit appears to be an integral component of the stator stalk in yeast mitochondrial F-ATPases []. The stator stalk is anchored in the membrane, and acts to prevent futile rotation of the ATPase subunits relative to the rotor during coupled ATP synthesis/hydrolysis. This subunit may have an analogous function in Metazoa. Subunit 8 differs in sequence between Metazoa, plants (IPR003319 from INTERPRO) and fungi (IPR009230 from INTERPRO). More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=23.90 E-value=1.2e+02 Score=17.96 Aligned_cols=11 Identities=27% Similarity=1.083 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 027611 207 LVFAILLILYF 217 (221)
Q Consensus 207 l~~~i~~vl~~ 217 (221)
++++++..+|+
T Consensus 19 ~l~~~~~~~~~ 29 (54)
T PF00895_consen 19 ILLIIMILIYF 29 (54)
T ss_pred HHHHHHHHHHh
Confidence 33333333443
No 338
>PF08196 UL2: UL2 protein; InterPro: IPR013269 This entry contains Orf UL2 of Human cytomegalovirus (HHV-5) (Human herpesvirus 5), which is a short protein of unknown function [].
Probab=23.86 E-value=1.8e+02 Score=17.72 Aligned_cols=18 Identities=28% Similarity=0.584 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 027611 204 ISVLVFAILLILYFKLTR 221 (221)
Q Consensus 204 i~~l~~~i~~vl~~k~~~ 221 (221)
|.+..+.|-.++|.|+.|
T Consensus 39 if~itlviwt~vwlkllr 56 (60)
T PF08196_consen 39 IFLITLVIWTVVWLKLLR 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444556688888765
No 339
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=23.81 E-value=3.3e+02 Score=20.69 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 027611 12 YCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSL 62 (221)
Q Consensus 12 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~ 62 (221)
+.....+|.+-+.++...-+. ....+..+...|+++++.++.+..++..+
T Consensus 49 imer~~~ieNdlg~~~~~~~g-~kk~~~~~~eelerLe~~iKdl~~lye~V 98 (157)
T COG3352 49 IMERMTDIENDLGKVKIEIEG-QKKQLQDIKEELERLEENIKDLVSLYELV 98 (157)
T ss_pred HHHHHHHHHhhcccccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566655555322111 22445666777777777777766665543
No 340
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=23.76 E-value=3.9e+02 Score=21.53 Aligned_cols=43 Identities=23% Similarity=0.255 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 47 DADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVK 89 (221)
Q Consensus 47 ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~ 89 (221)
+-+..+..+.-|+.+...++=..++......+.|++.++.+|+
T Consensus 98 QQ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr 140 (220)
T KOG3156|consen 98 QQKVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLR 140 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555544444455555555555555555554
No 341
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=23.76 E-value=5.7e+02 Score=23.42 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=8.0
Q ss_pred HhHHHhhcchhhhhh
Q 027611 163 QSLLHAHNTLHGVDD 177 (221)
Q Consensus 163 e~l~~~~~~~~~i~~ 177 (221)
=+|..+.+.+.+++-
T Consensus 250 yKLkkvI~aLtGidl 264 (508)
T PF00901_consen 250 YKLKKVINALTGIDL 264 (508)
T ss_pred HHHHHHHHHhhCCCh
Confidence 345555555555543
No 342
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=23.75 E-value=1.7e+02 Score=28.19 Aligned_cols=69 Identities=25% Similarity=0.344 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027611 144 MLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 144 ~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
-.|.+.++.++...+..+-.... +...+....-+...|..-+.....+..++.+++++++++++|-++.
T Consensus 525 ~~~~~~~~~~~~~~i~~~~~~~g--------v~~~vtG~~vi~~~m~~~i~~sq~~~t~l~~~~V~~ll~i~fRs~~ 593 (727)
T COG1033 525 QGELEDVGREILRDIEKENIPTG--------VKVYVTGESVIYVEMNELLTSSQLISTVLGIILVFALLLIIFRSPL 593 (727)
T ss_pred hhHHHHHHHHHHHHHHhhcCCCC--------cEEEEcCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhchH
Confidence 34566677777777666654443 2344445556677888888888888888888888888777776653
No 343
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=23.61 E-value=2.2e+02 Score=18.66 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 64 PNVKAMLLSKLREYKTDLNNLKNEVKR 90 (221)
Q Consensus 64 ~~~r~~~~~k~~~~~~~l~~l~~~~~~ 90 (221)
+..+..+..++.+|....+.++..+..
T Consensus 46 ~~~k~~~r~ki~eY~~RAE~Lk~~l~~ 72 (77)
T cd02683 46 EAKKKNLRQKISEYMDRAEAIKKRLDQ 72 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566788999999999999999988764
No 344
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=23.44 E-value=7.9e+02 Score=24.94 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=13.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhc
Q 027611 37 KLSEIKTGLDDADALIRKMDLEARS 61 (221)
Q Consensus 37 ~~~~~~~~l~ea~~~l~~m~~E~~~ 61 (221)
.+.++++.++++..-.+.++.|+..
T Consensus 317 k~teiea~i~~~~~e~~~~d~Ei~~ 341 (1074)
T KOG0250|consen 317 KLTEIEAKIGELKDEVDAQDEEIEE 341 (1074)
T ss_pred hhhHHHHHHHHHHHhhhhhhHHHHH
Confidence 3455555555555555555555543
No 345
>CHL00080 psbM photosystem II protein M
Probab=23.39 E-value=1.1e+02 Score=16.86 Aligned_cols=8 Identities=63% Similarity=1.086 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 027611 210 AILLILYF 217 (221)
Q Consensus 210 ~i~~vl~~ 217 (221)
++.+++|.
T Consensus 20 ~FLlilyv 27 (34)
T CHL00080 20 AFLLIIYV 27 (34)
T ss_pred HHHHHhhe
Confidence 34445554
No 346
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=23.32 E-value=3.6e+02 Score=20.89 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh-cchHHHHHHHH-HHHhhHHHHHHHHHHHHHHHhcC
Q 027611 6 EGYERQYCELSAGLSRKCTAASA-LDGELKKQKLS-EIKTGLDDADALIRKMDLEARSL 62 (221)
Q Consensus 6 ~~ye~e~~~~~~~i~~~l~~~~~-~~~~~~~~~~~-~~~~~l~ea~~~l~~m~~E~~~~ 62 (221)
..+-+++...+..+......+.+ .++.=....+. +++..+.++.+.+.....+++..
T Consensus 67 ~~~~~~~~~~l~~~~~~~~~vd~~~~a~i~e~~L~~el~~~l~~~~~~~~~~~~~~~~~ 125 (204)
T PF04740_consen 67 ILLLEEYQEALKFIKDFQSEVDSSSNAIIDEDFLESELKKKLNQLKEQIEDLQDEINSI 125 (204)
T ss_pred HHHHHHHHHHHHhHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444444444432 22222234455 77788888888887777777553
No 347
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=23.29 E-value=2.3e+02 Score=22.46 Aligned_cols=54 Identities=11% Similarity=0.235 Sum_probs=35.5
Q ss_pred HHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027611 41 IKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (221)
Q Consensus 41 ~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~ 94 (221)
++..++....-++.|+.=+..+..-....+......|++++..+-..|..+...
T Consensus 2 ve~~~d~f~~f~~~md~svk~l~~~~~~~~kk~~~~~kkeyqk~G~af~~L~~a 55 (199)
T cd07626 2 VEQQVDAFKKFVKSMDDSVKNLINIAQEQAKKHQGPYKKEYQKIGQAFTSLGTA 55 (199)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 455666667777777776666554444455566677888888888878776533
No 348
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=23.27 E-value=1.4e+02 Score=18.46 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027611 198 WIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~ 217 (221)
++.|+=++.+++++++++|.
T Consensus 18 lvtyaDlmTLLl~fFVlL~s 37 (58)
T PF13677_consen 18 LVTYADLMTLLLAFFVLLFS 37 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666566666666666553
No 349
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=23.26 E-value=3.1e+02 Score=20.24 Aligned_cols=19 Identities=37% Similarity=0.681 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027611 72 SKLREYKTDLNNLKNEVKR 90 (221)
Q Consensus 72 ~k~~~~~~~l~~l~~~~~~ 90 (221)
..++..+.++..++..+..
T Consensus 108 ~~~k~~kee~~klk~~~~~ 126 (151)
T PF11559_consen 108 AKLKQEKEELQKLKNQLQQ 126 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333
No 350
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=23.25 E-value=5.2e+02 Score=22.76 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027611 201 GSIISVLVFAILLILYF 217 (221)
Q Consensus 201 ~~ii~~l~~~i~~vl~~ 217 (221)
.++++.+++++++++..
T Consensus 402 ~~~~~Gl~lg~~~~~l~ 418 (444)
T TIGR03017 402 LSIFLGMLLGIGFAFLA 418 (444)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444455444443
No 351
>PLN02943 aminoacyl-tRNA ligase
Probab=23.02 E-value=5e+02 Score=25.95 Aligned_cols=58 Identities=12% Similarity=0.109 Sum_probs=41.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhc------CChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027611 35 KQKLSEIKTGLDDADALIRKMDLEARS------LQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (221)
Q Consensus 35 ~~~~~~~~~~l~ea~~~l~~m~~E~~~------~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~ 92 (221)
.+....+++.++.++.-+..++..+.+ .|+.....-..|+..+..++..++..+..+.
T Consensus 888 ~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~ 951 (958)
T PLN02943 888 SAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLK 951 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566777777777777777766654 5666667777888888888888888777654
No 352
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=22.92 E-value=1.3e+02 Score=16.55 Aligned_cols=9 Identities=56% Similarity=0.877 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 027611 209 FAILLILYF 217 (221)
Q Consensus 209 ~~i~~vl~~ 217 (221)
.++.+++|.
T Consensus 19 t~FLiilYv 27 (33)
T TIGR03038 19 TVFLLILYI 27 (33)
T ss_pred HHHHHHHhe
Confidence 344445554
No 353
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=22.79 E-value=1e+02 Score=26.82 Aligned_cols=11 Identities=27% Similarity=0.908 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 027611 207 LVFAILLILYF 217 (221)
Q Consensus 207 l~~~i~~vl~~ 217 (221)
++++|.+|||+
T Consensus 321 vIVLIMvIIYL 331 (353)
T TIGR01477 321 IIVLIMVIIYL 331 (353)
T ss_pred HHHHHHHHHHH
Confidence 33333344443
No 354
>PHA03386 P10 fibrous body protein; Provisional
Probab=22.77 E-value=1.7e+02 Score=20.21 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=21.6
Q ss_pred HHHHHHhhHhHHHhhcchhhhhhhHH
Q 027611 155 LQDLHQQRQSLLHAHNTLHGVDDNIS 180 (221)
Q Consensus 155 ~~~L~~Qre~l~~~~~~~~~i~~~l~ 180 (221)
...|..|.++|.....++.+|.+-|.
T Consensus 35 ~~~LDa~~~qL~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 35 SQPLDGLPAQLTELDTKVSDIQSILT 60 (94)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 55688999999999999998887664
No 355
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=22.46 E-value=71 Score=22.11 Aligned_cols=6 Identities=33% Similarity=0.440 Sum_probs=2.4
Q ss_pred HHHHHH
Q 027611 211 ILLILY 216 (221)
Q Consensus 211 i~~vl~ 216 (221)
|++|.+
T Consensus 58 i~Lv~C 63 (98)
T PF07204_consen 58 IALVCC 63 (98)
T ss_pred HHHHHH
Confidence 443433
No 356
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=22.40 E-value=2.8e+02 Score=20.03 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=21.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 54 KMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKR 90 (221)
Q Consensus 54 ~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~ 90 (221)
.+-...+.+|++.+..+..-++.....++.+-.++-+
T Consensus 91 ~ll~~~~~L~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 127 (135)
T PRK09706 91 ELLELFDALPESEQDAQLSEMRARVENFNKLFEELLK 127 (135)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456788887776666665555555555555444
No 357
>PHA03326 nuclear egress membrane protein; Provisional
Probab=22.28 E-value=84 Score=25.91 Aligned_cols=23 Identities=4% Similarity=0.170 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027611 197 KWIMGSIISVLVFAILLILYFKL 219 (221)
Q Consensus 197 k~il~~ii~~l~~~i~~vl~~k~ 219 (221)
++++++++++++++..+|+|...
T Consensus 244 ~~~l~g~~~l~~llv~~v~~~~~ 266 (275)
T PHA03326 244 RVALVGAVVLALLLVCYVLWKAA 266 (275)
T ss_pred hhHHHHHHHHHHHHHHHHHcccc
Confidence 67788877777777777777654
No 358
>PF12409 P5-ATPase: P5-type ATPase cation transporter
Probab=22.25 E-value=1.2e+02 Score=21.66 Aligned_cols=19 Identities=16% Similarity=0.440 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027611 197 KWIMGSIISVLVFAILLIL 215 (221)
Q Consensus 197 k~il~~ii~~l~~~i~~vl 215 (221)
|.+++.++.++.++++.++
T Consensus 16 r~~l~~~l~ilT~Gll~L~ 34 (119)
T PF12409_consen 16 RTILYYFLCILTLGLLYLV 34 (119)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566555555544444443
No 359
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=22.23 E-value=1.1e+02 Score=25.52 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027611 201 GSIISVLVFAILLILYF 217 (221)
Q Consensus 201 ~~ii~~l~~~i~~vl~~ 217 (221)
++++.+++.++++++++
T Consensus 252 vg~i~~v~~i~~~~~~~ 268 (278)
T PF03381_consen 252 VGGICLVLAIIFLIIHY 268 (278)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 360
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.23 E-value=6.1e+02 Score=23.18 Aligned_cols=59 Identities=7% Similarity=0.192 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 32 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 32 ~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
..|...+...+...........+++..-..+..... ....++-.+-+++.+|.+++...
T Consensus 139 ~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~-~~V~~iN~ll~~Ia~LN~~I~~~ 197 (507)
T PRK07739 139 GARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEID-VTVKEINSLASQISDLNKQIAKV 197 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666665555555555444333332222 23345555555666666666554
No 361
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=22.12 E-value=5.8e+02 Score=22.92 Aligned_cols=52 Identities=15% Similarity=0.318 Sum_probs=27.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 37 KLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEV 88 (221)
Q Consensus 37 ~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~ 88 (221)
.+.+++..+.+++..+..+..+-....+.....+..++..+...+...+.++
T Consensus 169 ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l 220 (498)
T TIGR03007 169 QIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLEL 220 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777655433223223334444555444444444443
No 362
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=22.11 E-value=1.1e+02 Score=25.78 Aligned_cols=17 Identities=24% Similarity=0.153 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027611 203 IISVLVFAILLILYFKL 219 (221)
Q Consensus 203 ii~~l~~~i~~vl~~k~ 219 (221)
.+++|++++++++++.+
T Consensus 239 G~v~ll~l~Gii~~~~~ 255 (281)
T PF12768_consen 239 GTVFLLVLIGIILAYIR 255 (281)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455555555443
No 363
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=21.86 E-value=2.1e+02 Score=17.77 Aligned_cols=25 Identities=4% Similarity=0.347 Sum_probs=11.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcC
Q 027611 38 LSEIKTGLDDADALIRKMDLEARSL 62 (221)
Q Consensus 38 ~~~~~~~l~ea~~~l~~m~~E~~~~ 62 (221)
+.++...+.++..-+.+|..++..+
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~l 29 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNAL 29 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 364
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.81 E-value=3.4e+02 Score=22.18 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027611 44 GLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (221)
Q Consensus 44 ~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~ 94 (221)
....+......+...+..+.|..+..|....+.|.++++.+.+.++.....
T Consensus 117 dp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~ 167 (266)
T cd01018 117 SPANAKIMAENIYEALAELDPQNATYYQANLDALLAELDALDSEIRTILSK 167 (266)
T ss_pred CHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355566666666666767777778899999999999999999998876443
No 365
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.74 E-value=3.8e+02 Score=20.80 Aligned_cols=39 Identities=36% Similarity=0.618 Sum_probs=21.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 027611 39 SEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLN 82 (221)
Q Consensus 39 ~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~ 82 (221)
+.+++.+...+.+|+- ..+||+.+.++..++..++.+++
T Consensus 27 s~iK~qiRd~eRlLkk-----~~LP~~Vr~e~er~L~~Lk~ql~ 65 (199)
T KOG4484|consen 27 SSIKNQIRDLERLLKK-----KDLPPEVREELERKLQDLKKQLD 65 (199)
T ss_pred HHHHHHHHHHHHHHhh-----ccCCHHHHHHHHHHHHHHHHHHH
Confidence 3444555544444443 35677766666666655555444
No 366
>PRK10772 cell division protein FtsL; Provisional
Probab=21.74 E-value=1.9e+02 Score=20.55 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=14.8
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 027611 189 MSRRMSR-DKWIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 189 m~rr~~~-dk~il~~ii~~l~~~i~~vl~~ 217 (221)
|..=... +|+.+++++++++.+++ |+|.
T Consensus 15 I~~Dl~~~~kl~l~Ll~~vv~SAl~-VV~~ 43 (108)
T PRK10772 15 IGDDLLRNGKLPLCLFIAVIVSAVT-VVTT 43 (108)
T ss_pred HHHHHHHcChHHHHHHHHHHHHHHH-HHHH
Confidence 3333444 67766666655555554 4443
No 367
>KOG2736 consensus Presenilin [Signal transduction mechanisms]
Probab=21.66 E-value=1.2e+02 Score=26.59 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027611 195 RDKWIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 195 ~dk~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
.|.+++..+|++..++.++..+|+|.
T Consensus 71 ~N~li~i~viv~~Tfllv~ly~~rfy 96 (406)
T KOG2736|consen 71 LNALIMISVIVVMTFLLVVLYKYRFY 96 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777766666555555553
No 368
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=21.64 E-value=2.3e+02 Score=18.11 Aligned_cols=8 Identities=13% Similarity=0.086 Sum_probs=3.0
Q ss_pred HHHHhhhh
Q 027611 19 LSRKCTAA 26 (221)
Q Consensus 19 i~~~l~~~ 26 (221)
+..++.++
T Consensus 10 Le~Iv~~L 17 (67)
T TIGR01280 10 LEQIVQKL 17 (67)
T ss_pred HHHHHHHH
Confidence 33333333
No 369
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=21.63 E-value=1.4e+02 Score=26.28 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 189 MSRRMSRDKWIMGSIISVLVFAIL 212 (221)
Q Consensus 189 m~rr~~~dk~il~~ii~~l~~~i~ 212 (221)
+..|..+.+.+++|++++++++++
T Consensus 80 ~~~r~~~R~~~~~G~~~f~~~l~~ 103 (385)
T PF06898_consen 80 FLKRLRRRKGFVAGIVLFLALLYI 103 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777666655443
No 370
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=21.62 E-value=3.4e+02 Score=19.97 Aligned_cols=14 Identities=7% Similarity=0.102 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 027611 69 MLLSKLREYKTDLN 82 (221)
Q Consensus 69 ~~~~k~~~~~~~l~ 82 (221)
+|..++...-.++.
T Consensus 75 E~~~~l~~lD~~V~ 88 (131)
T PF10198_consen 75 EYKRILDDLDKQVE 88 (131)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344333333333
No 371
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=21.52 E-value=3.8e+02 Score=20.62 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=10.9
Q ss_pred HHhhHHHHHHHHHHHHHHHhcC
Q 027611 41 IKTGLDDADALIRKMDLEARSL 62 (221)
Q Consensus 41 ~~~~l~ea~~~l~~m~~E~~~~ 62 (221)
+.+..++++....++..+....
T Consensus 46 itk~veeLe~~~~q~~~~~s~~ 67 (165)
T PF09602_consen 46 ITKQVEELEKELKQFKREFSDL 67 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555444443
No 372
>PRK10807 paraquat-inducible protein B; Provisional
Probab=21.50 E-value=6.6e+02 Score=23.32 Aligned_cols=46 Identities=11% Similarity=0.188 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 027611 13 CELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARS 61 (221)
Q Consensus 13 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~ 61 (221)
..+.+++...+++++..+-+ +.+.++...|.++...+++++..+..
T Consensus 416 ~~l~~~~~~il~kin~lple---~i~~~l~~tL~~~~~tl~~l~~~l~~ 461 (547)
T PRK10807 416 AQIQQKLMEALDKINNLPLN---PMIEQATSTLSESQRTMRELQTTLDS 461 (547)
T ss_pred HHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666555432 34445666677777777666666543
No 373
>PF13864 Enkurin: Calmodulin-binding
Probab=21.39 E-value=2.8e+02 Score=18.99 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 30 DGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNV-KAMLLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 30 ~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~-r~~~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
+.++|..++. .++.....+..+.+.+|-.. ......+-..+..++.++..++..+
T Consensus 38 ~eeER~~lL~-------~Lk~~~~el~~ey~~lp~~~DT~~~~~rK~~lE~~L~qlE~dI~~l 93 (98)
T PF13864_consen 38 SEEERQELLE-------GLKKNWDELNKEYQKLPFSIDTLRKKRRKEELEKELKQLEKDIKKL 93 (98)
T ss_pred CHHHHHHHHH-------HHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455655554 44445555555666666321 1223444455566666666666554
No 374
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=21.32 E-value=1.4e+02 Score=19.66 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 027611 202 SIISVLVFAILLI 214 (221)
Q Consensus 202 ~ii~~l~~~i~~v 214 (221)
++++.++++++++
T Consensus 65 ~~~~Gl~lgi~~~ 77 (82)
T PF13807_consen 65 GLFLGLILGIGLA 77 (82)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444433
No 375
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=21.21 E-value=32 Score=29.07 Aligned_cols=11 Identities=9% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHh
Q 027611 209 FAILLILYFKL 219 (221)
Q Consensus 209 ~~i~~vl~~k~ 219 (221)
++++++++|+.
T Consensus 162 A~iIa~icyrr 172 (290)
T PF05454_consen 162 AGIIACICYRR 172 (290)
T ss_dssp -----------
T ss_pred HHHHHHHhhhh
Confidence 33444444443
No 376
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=21.19 E-value=1.4e+02 Score=20.78 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 027611 198 WIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
-++|.|..++.++-.+-+|.||-
T Consensus 45 ~l~yaI~aVvglIGai~VY~k~~ 67 (98)
T PF13572_consen 45 KLMYAIGAVVGLIGAIRVYIKWN 67 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 35566666666666778888884
No 377
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=21.13 E-value=2.3e+02 Score=19.02 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027611 198 WIMGSIISVLVFAILLILY 216 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~ 216 (221)
+|+..+++++++.|+-++.
T Consensus 37 liivvVvVlvVvvivg~LL 55 (93)
T PF08999_consen 37 LIIVVVVVLVVVVIVGALL 55 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeeehhHHHHHHHHH
Confidence 3444444444444444443
No 378
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=21.13 E-value=4.2e+02 Score=20.90 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=32.0
Q ss_pred HHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027611 41 IKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (221)
Q Consensus 41 ~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~ 94 (221)
++..|.+++..+......+-..-.. +..+..++..+......+...-..+...
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~-~~~le~~~~~~~~~~~~~~~~A~~Al~~ 80 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMAN-QKRLERKLDEAEEEAEKWEKQAELALAA 80 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555566666665555555443322 3457777777777777777777666443
No 379
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=20.98 E-value=1.7e+02 Score=21.86 Aligned_cols=13 Identities=23% Similarity=0.225 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHh
Q 027611 207 LVFAILLILYFKL 219 (221)
Q Consensus 207 l~~~i~~vl~~k~ 219 (221)
.+|+++++++.||
T Consensus 36 ~lil~~~wl~kr~ 48 (137)
T COG3190 36 ALILFLAWLVKRL 48 (137)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444454
No 380
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=20.97 E-value=66 Score=19.09 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027611 202 SIISVLVFAILLILYFKL 219 (221)
Q Consensus 202 ~ii~~l~~~i~~vl~~k~ 219 (221)
+|.++|+.+-++-+|..|
T Consensus 13 ~i~~lL~~~TgyaiYtaF 30 (46)
T PRK13183 13 TILAILLALTGFGIYTAF 30 (46)
T ss_pred HHHHHHHHHhhheeeecc
Confidence 444444444555555444
No 381
>PF02238 COX7a: Cytochrome c oxidase subunit VIIa; InterPro: IPR003177 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. This family is composed of the heart and liver isoforms of cytochrome c oxidase subunit VIIa. ; GO: 0004129 cytochrome-c oxidase activity, 0009055 electron carrier activity, 0005746 mitochondrial respiratory chain; PDB: 2DYS_J 3AG3_W 3AG1_J 1OCC_J 3ABL_J 3AG4_J 3ABM_J 2EIL_W 3AG2_W 2EIM_W ....
Probab=20.93 E-value=2.2e+02 Score=17.65 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027611 195 RDKWIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 195 ~dk~il~~ii~~l~~~i~~vl~~ 217 (221)
.|.++--+.+.+++++.++.+|.
T Consensus 25 ~D~~Ly~~Tm~L~~~gt~~~l~~ 47 (56)
T PF02238_consen 25 MDDILYRVTMPLTVAGTSYCLYG 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHH
Confidence 34444445555566666555554
No 382
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=20.91 E-value=3.2e+02 Score=26.39 Aligned_cols=54 Identities=7% Similarity=0.152 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC
Q 027611 9 ERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQ 63 (221)
Q Consensus 9 e~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~ 63 (221)
.+++.++++...-..-.+|.. .+.....+.+++..+++++..++..+.+++..-
T Consensus 203 ~~kv~~il~~~~f~~~~~p~~-~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~ 256 (759)
T PF01496_consen 203 EEKVKKILRSFGFERYDLPED-EGTPEEAIKELEEEIEELEKELEELEEELKKLL 256 (759)
T ss_dssp HHHHHHHHHTTT--B----GG-GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCceecCCCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455554444433334443 234567788899999999999998888887543
No 383
>PHA01782 hypothetical protein
Probab=20.90 E-value=4e+02 Score=20.54 Aligned_cols=65 Identities=20% Similarity=0.315 Sum_probs=47.4
Q ss_pred hhhhhHhhcchHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 124 LMSTERLNHSTDRIKESRRTMLETEE-LGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGS 202 (221)
Q Consensus 124 l~~~~~l~~~~~~L~~s~~~~~ete~-~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ 202 (221)
+.+...+.+..+.|...-.-++|..+ +|.+|+... +-.+++..+++++..|-+..++|-+.=|+
T Consensus 12 i~g~~~I~~ai~aI~~~gk~LDe~iQ~tglsil~Hv---------------deHGDVt~a~kL~~aMPKGsRrnAL~~wl 76 (177)
T PHA01782 12 FRGAKEINRAIDAIAVRGKELDEAIQLTGLSILNHV---------------DEHGDVTVAKKLYEAMPKGSRRNALAEWL 76 (177)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHcccHHHHHHHHHHccccchhhHHHHHH
Confidence 45666777777777777777777766 566665432 34578899999999999988888877665
Q ss_pred H
Q 027611 203 I 203 (221)
Q Consensus 203 i 203 (221)
+
T Consensus 77 v 77 (177)
T PHA01782 77 V 77 (177)
T ss_pred H
Confidence 4
No 384
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=20.84 E-value=7.2e+02 Score=23.50 Aligned_cols=60 Identities=5% Similarity=0.140 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027611 32 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (221)
Q Consensus 32 ~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~ 92 (221)
..|...+...+.........-.+++..-..+..... ....++-.+-+++.+|.+++....
T Consensus 139 a~R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~-~~V~~iN~ll~qIa~LN~qI~~~~ 198 (627)
T PRK06665 139 AERQVVLERAQSLGERIHDRYRSLERIRDMANDEIE-ITVEEINNILRNIADLNEQIVKSQ 198 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356666666666655555554444443333222221 223455555556666666665543
No 385
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=20.80 E-value=79 Score=23.29 Aligned_cols=7 Identities=29% Similarity=0.657 Sum_probs=2.9
Q ss_pred HHHHhcC
Q 027611 215 LYFKLTR 221 (221)
Q Consensus 215 l~~k~~~ 221 (221)
.+++|.|
T Consensus 121 ~~yr~~r 127 (139)
T PHA03099 121 SVYRFTR 127 (139)
T ss_pred hhheeee
Confidence 3345543
No 386
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=20.80 E-value=3.6e+02 Score=19.98 Aligned_cols=46 Identities=11% Similarity=0.175 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHH----HHHHHHhhhhhhcch--HHHHHHHHHHHhhHHHHH
Q 027611 4 VFEGYERQYCELS----AGLSRKCTAASALDG--ELKKQKLSEIKTGLDDAD 49 (221)
Q Consensus 4 ~f~~ye~e~~~~~----~~i~~~l~~~~~~~~--~~~~~~~~~~~~~l~ea~ 49 (221)
.|+.+-.+|..-+ .+|...++.+|..+. ++..+.+.+++..++++.
T Consensus 66 ~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~ 117 (144)
T PF11221_consen 66 EFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAE 117 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4555555554444 577788888886443 233344444444444444
No 387
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=20.80 E-value=1.7e+02 Score=21.74 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 194 SRDKWIMGSIISVLVFAILLILYFKL 219 (221)
Q Consensus 194 ~~dk~il~~ii~~l~~~i~~vl~~k~ 219 (221)
..+.+.+|+.|+++-.+ ++|+|.++
T Consensus 50 ~l~tl~~Y~~iAv~nAv-vLI~WA~Y 74 (137)
T PRK14585 50 ARSRLQFYFLLAVANAV-VLIVWALY 74 (137)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 66788889888776544 46777664
No 388
>PF12438 DUF3679: Protein of unknown function (DUF3679) ; InterPro: IPR020534 This entry contains proteins with no known function.
Probab=20.74 E-value=92 Score=19.38 Aligned_cols=11 Identities=27% Similarity=0.156 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 027611 198 WIMGSIISVLV 208 (221)
Q Consensus 198 ~il~~ii~~l~ 208 (221)
+++.++++++.
T Consensus 2 ~~~~~~il~~g 12 (56)
T PF12438_consen 2 CILLVIILFFG 12 (56)
T ss_pred chHHHHHHHHH
Confidence 34444433333
No 389
>PTZ00087 thrombosponding-related protein; Provisional
Probab=20.66 E-value=83 Score=26.29 Aligned_cols=17 Identities=24% Similarity=0.616 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027611 202 SIISVLVFAILLILYFK 218 (221)
Q Consensus 202 ~ii~~l~~~i~~vl~~k 218 (221)
+|+++++++|+.-+|||
T Consensus 305 iv~vi~v~~ily~ify~ 321 (340)
T PTZ00087 305 IVLIICVMGILYHIFYK 321 (340)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 45555655555555554
No 390
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=20.55 E-value=1.4e+02 Score=26.32 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 189 MSRRMSRDKWIMGSIISVLVFAILL 213 (221)
Q Consensus 189 m~rr~~~dk~il~~ii~~l~~~i~~ 213 (221)
+.+|..+++.+++|+++++++++++
T Consensus 77 ~~~r~~kRk~~~~G~~~f~~ll~~l 101 (382)
T TIGR02876 77 LFKRLRKRPGILIGILLFLAIVYFL 101 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788887777776655543
No 391
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=20.40 E-value=9.3e+02 Score=24.64 Aligned_cols=189 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHH
Q 027611 5 FEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNL 84 (221)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l 84 (221)
...-.+++..-+..+...+..+ ...-+.-...+..++..+..+...+..++.+...+....+..- ..+..+...+..+
T Consensus 728 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 805 (1163)
T COG1196 728 LEEELEQLQSRLEELEEELEEL-EEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQ-EELEELEEELEEA 805 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_pred HHHHHHhhccCCChhhhhHhhccCccCcccCcHHHHHHHhhhhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 027611 85 KNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQS 164 (221)
Q Consensus 85 ~~~~~~~~~~~~~~~~r~~Ll~~~~~~~~~~~~~~r~~ll~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~ 164 (221)
+..+..+.........+.+-+...-..-..........+-.-...+......+......+.+...-=..+-..|..-+..
T Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~ 885 (1163)
T COG1196 806 ERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEE 885 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhcchhhhhhhHHHHHHHHHHHHHHHHH
Q 027611 165 LLHAHNTLHGVDDNISKSKKILTAMSRRMSR 195 (221)
Q Consensus 165 l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~ 195 (221)
.......+..+...+.....-+.....+...
T Consensus 886 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 916 (1163)
T COG1196 886 KEELEEELRELESELAELKEEIEKLRERLEE 916 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 392
>PF11820 DUF3339: Protein of unknown function (DUF3339); InterPro: IPR021775 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. Proteins in this family are about 70 amino acids in length.
Probab=20.28 E-value=73 Score=20.63 Aligned_cols=24 Identities=17% Similarity=0.330 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 193 MSRDKWIMGSIISVLVFAILLILY 216 (221)
Q Consensus 193 ~~~dk~il~~ii~~l~~~i~~vl~ 216 (221)
+..+.+|.++++.++++++.+.+|
T Consensus 44 i~vHa~iff~l~~i~~va~~vhiy 67 (68)
T PF11820_consen 44 ILVHALIFFALFTIFLVAIGVHIY 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHheeEee
Confidence 445556666666666666655443
No 393
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.18 E-value=8.4e+02 Score=24.05 Aligned_cols=83 Identities=14% Similarity=0.212 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhcchH--H----HHHHHHHHHhhHHHHHHHHHHHHHHHhcCCh------hHHHHHHHHHHH
Q 027611 9 ERQYCELSAGLSRKCTAASALDGE--L----KKQKLSEIKTGLDDADALIRKMDLEARSLQP------NVKAMLLSKLRE 76 (221)
Q Consensus 9 e~e~~~~~~~i~~~l~~~~~~~~~--~----~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~------~~r~~~~~k~~~ 76 (221)
+=+|..++.+....+.++-..+++ + ..+.+.+.......++..+..++.+..++.. ....++..+++.
T Consensus 617 D~~f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~ 696 (970)
T KOG0946|consen 617 DFEFKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQD 696 (970)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777766665332221 1 1233444444444455555555554443321 112334444444
Q ss_pred HHHHHHHHHHHHHHh
Q 027611 77 YKTDLNNLKNEVKRV 91 (221)
Q Consensus 77 ~~~~l~~l~~~~~~~ 91 (221)
......++++++..+
T Consensus 697 ~~s~hsql~~q~~~L 711 (970)
T KOG0946|consen 697 FISEHSQLKDQLDLL 711 (970)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444555555444
No 394
>MTH00186 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=20.18 E-value=2.1e+02 Score=17.05 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027611 198 WIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~ 217 (221)
+++++++.++++++...+|+
T Consensus 10 ~~l~~~~~~~~~~~~~~~~~ 29 (52)
T MTH00186 10 ALLFIMIWLLIFLAMSMTWW 29 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 395
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=20.13 E-value=5e+02 Score=21.36 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027611 68 AMLLSKLREYKTDLNNLKNEV 88 (221)
Q Consensus 68 ~~~~~k~~~~~~~l~~l~~~~ 88 (221)
.+++.+++....+++.++.++
T Consensus 224 seLq~r~~~l~~~L~~L~~e~ 244 (289)
T COG4985 224 SELQKRLAQLQTELDALRAEL 244 (289)
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 344444444444444444444
No 396
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=20.11 E-value=1.5e+02 Score=23.91 Aligned_cols=21 Identities=5% Similarity=-0.075 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhcCChhHHHHH
Q 027611 50 ALIRKMDLEARSLQPNVKAML 70 (221)
Q Consensus 50 ~~l~~m~~E~~~~~~~~r~~~ 70 (221)
-+++.+..-+..+|+.+|...
T Consensus 78 lll~Al~Et~~~Lp~~qK~~i 98 (226)
T PHA02662 78 LASAALAETLAELPRADRLAV 98 (226)
T ss_pred HHHHHHHHHHHhCCHHHHHHH
Confidence 334444444556676665443
No 397
>COG1422 Predicted membrane protein [Function unknown]
Probab=20.10 E-value=3.5e+02 Score=21.57 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027611 42 KTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (221)
Q Consensus 42 ~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~ 94 (221)
..++++.++..++++.|.+....+...+-.+|+++-+.+..+.+.++-+.+..
T Consensus 71 ~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qfk 123 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQFK 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 398
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=20.09 E-value=2.4e+02 Score=17.66 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=20.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 63 QPNVKAMLLSKLREYKTDLNNLKNEV 88 (221)
Q Consensus 63 ~~~~r~~~~~k~~~~~~~l~~l~~~~ 88 (221)
++..+..+..++.+|....+.++..+
T Consensus 44 ~~~~~~~l~~k~~~yl~RAE~lk~~L 69 (69)
T PF04212_consen 44 NPERRQALRQKMKEYLERAEKLKEYL 69 (69)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45667789999999999888887643
No 399
>PTZ00464 SNF-7-like protein; Provisional
Probab=20.01 E-value=4.6e+02 Score=20.97 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHH
Q 027611 150 LGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRR 192 (221)
Q Consensus 150 ~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr 192 (221)
.-..++..|..=...|..++..+ +++....++..|.--
T Consensus 99 ~~~~vv~amk~g~kaLK~~~k~i-----~id~Vd~l~Dei~E~ 136 (211)
T PTZ00464 99 DTKVQVDAMKQAAKTLKKQFKKL-----NVDKVEDLQDELADL 136 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHH
Confidence 34566677777777777777665 244444444444433
No 400
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=20.00 E-value=2e+02 Score=16.75 Aligned_cols=15 Identities=0% Similarity=0.160 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 027611 201 GSIISVLVFAILLIL 215 (221)
Q Consensus 201 ~~ii~~l~~~i~~vl 215 (221)
|++.+++++++++..
T Consensus 11 Yg~t~~~l~~l~~~~ 25 (46)
T PF04995_consen 11 YGVTALVLAGLIVWS 25 (46)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
Done!