Query 027611
Match_columns 221
No_of_seqs 121 out of 781
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 21:20:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027611.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027611hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qyw_A Vesicle transport throu 99.8 3E-20 1E-24 130.7 11.5 89 1-89 13-102 (102)
2 1vcs_A Vesicle transport throu 99.8 3.4E-20 1.2E-24 130.5 9.1 94 1-94 3-96 (102)
3 2nps_C Vesicle transport throu 99.8 6E-20 2E-24 123.6 6.7 79 119-197 3-81 (81)
4 3onj_A T-snare VTI1; helix, HA 99.8 7.2E-19 2.5E-23 122.6 12.3 91 3-93 1-94 (97)
5 1gl2_C VTI1B, vesicle transpor 99.6 2.2E-15 7.5E-20 97.0 6.1 64 128-191 2-65 (65)
6 1n7s_C SNAP-25A; neuronal snar 99.3 7.6E-12 2.6E-16 83.4 8.0 67 125-191 13-79 (79)
7 1nhl_A Synaptosomal-associated 99.0 3.9E-10 1.3E-14 69.6 5.6 52 138-189 3-54 (54)
8 3b5n_C Protein transport prote 98.6 2.3E-07 7.8E-12 59.9 7.9 61 131-191 8-68 (70)
9 1l4a_C S-SNAP25 fusion protein 98.5 5.6E-08 1.9E-12 64.9 3.4 65 126-190 18-82 (83)
10 3hd7_B Syntaxin-1A; membrane p 97.9 0.00016 5.3E-09 50.9 10.9 81 135-215 21-104 (109)
11 3hd7_A Vesicle-associated memb 97.9 0.00042 1.4E-08 47.1 12.1 70 133-202 3-72 (91)
12 2kog_A Vesicle-associated memb 97.4 0.00027 9.3E-09 50.4 5.3 85 132-216 30-114 (119)
13 1gl2_D Syntaxin 8, vesicle tra 96.3 0.012 4.2E-07 37.0 6.2 62 129-190 3-64 (65)
14 2nps_D Syntaxin-6; vesicle fus 96.3 0.018 6.3E-07 38.0 7.1 66 128-193 12-77 (82)
15 3hd7_A Vesicle-associated memb 96.1 0.062 2.1E-06 36.2 9.3 78 130-213 7-87 (91)
16 3b5n_D Protein transport prote 95.6 0.037 1.3E-06 34.7 5.9 54 135-188 10-63 (64)
17 1sfc_D Protein (SNAP-25B), pro 95.6 0.035 1.2E-06 37.1 6.0 61 131-191 25-85 (87)
18 1n7s_D SNAP-25A; neuronal snar 95.4 0.067 2.3E-06 33.6 6.7 56 134-189 9-64 (66)
19 1l4a_D S-SNAP25 fusion protein 94.7 0.049 1.7E-06 36.4 4.7 58 133-190 28-85 (87)
20 1dn1_B Syntaxin 1A, syntaxin b 91.8 3.2 0.00011 33.3 12.1 62 137-198 202-266 (267)
21 3vkg_A Dynein heavy chain, cyt 86.4 41 0.0014 36.5 22.9 100 120-219 2013-2119(3245)
22 2kog_A Vesicle-associated memb 86.1 1.2 4E-05 31.4 4.8 83 127-215 32-117 (119)
23 2xhe_B Syntaxin1; exocytosis, 84.9 13 0.00046 29.7 13.3 55 135-189 217-271 (279)
24 1jth_B Syntaxin 1A; coiled-coi 82.9 6.9 0.00024 24.9 7.1 56 136-191 11-66 (77)
25 3ghg_A Fibrinogen alpha chain; 79.5 13 0.00045 32.6 9.6 26 3-28 53-78 (562)
26 1fjk_A Cardiac phospholamban; 79.4 4.4 0.00015 23.0 4.4 26 190-215 24-49 (52)
27 2nps_B Syntaxin 13, vesicle-as 75.7 12 0.00041 23.3 7.4 56 137-192 8-63 (71)
28 3b5n_B Protein SSO1; snare com 75.6 12 0.00041 23.2 7.2 55 136-190 11-65 (69)
29 1gl2_B Syntaxin 7; membrane pr 75.4 12 0.00039 23.0 7.2 52 137-188 11-62 (65)
30 1n7s_B Syntaxin 1A; neuronal s 74.8 12 0.00042 23.1 7.2 53 136-188 13-65 (68)
31 1deq_A Fibrinogen (alpha chain 74.4 19 0.00063 30.3 8.8 27 3-29 56-82 (390)
32 1sfc_A VAMP 2, protein (synapt 74.3 17 0.00057 24.3 7.8 64 132-195 27-90 (96)
33 3ajm_A Programmed cell death p 74.1 28 0.00095 26.8 11.1 77 10-91 94-170 (213)
34 1m1j_B Fibrinogen beta chain; 73.7 44 0.0015 29.0 11.5 27 3-29 89-115 (464)
35 2jee_A YIIU; FTSZ, septum, coi 72.5 17 0.00057 23.5 6.5 23 38-60 8-30 (81)
36 2knc_B Integrin beta-3; transm 72.5 4 0.00014 26.4 3.5 19 201-219 16-34 (79)
37 2jwa_A Receptor tyrosine-prote 71.8 3.9 0.00013 23.3 2.9 13 205-217 23-35 (44)
38 3c98_B Syntaxin-1A; protein co 71.8 33 0.0011 26.6 11.2 59 129-187 206-264 (279)
39 2jwa_A Receptor tyrosine-prote 71.7 5.2 0.00018 22.8 3.4 24 198-221 13-36 (44)
40 2k9j_B Integrin beta-3; transm 71.7 5.3 0.00018 22.6 3.5 18 202-219 16-33 (43)
41 1n7s_A Vesicle-associated memb 71.6 14 0.00049 22.4 7.8 59 134-192 3-61 (63)
42 3b5n_A Synaptobrevin homolog 1 70.2 15 0.00052 22.1 7.7 59 135-193 2-60 (61)
43 2c5k_T Syntaxin TLG1, T-snare 69.3 22 0.00076 23.6 9.2 85 1-89 3-92 (95)
44 1t3j_A Mitofusin 1; coiled coi 66.7 26 0.00088 23.4 7.0 53 36-88 40-94 (96)
45 2jee_A YIIU; FTSZ, septum, coi 64.2 26 0.0009 22.6 9.7 21 1-21 3-24 (81)
46 1sfc_B Protein (syntaxin 1A), 64.0 26 0.00089 22.5 7.2 55 136-190 22-76 (83)
47 4dnd_A Syntaxin-10, SYN10; str 62.2 38 0.0013 23.9 11.9 58 3-60 27-91 (130)
48 2nps_A VAMP-4, vesicle-associa 60.8 20 0.0007 22.5 5.1 60 135-194 8-67 (74)
49 3j1r_A Archaeal adhesion filam 59.1 15 0.00051 18.1 3.3 18 203-220 8-25 (26)
50 4afl_A P29ING4, inhibitor of g 57.8 39 0.0013 22.5 7.3 24 4-27 5-28 (104)
51 1l4a_A Synaptobrevin; snare, s 57.3 18 0.0006 23.2 4.4 59 135-193 15-73 (80)
52 2l6w_A Beta-type platelet-deri 59.1 2.7 9.2E-05 23.2 0.0 15 203-217 19-33 (39)
53 1afo_A Glycophorin A; integral 53.5 20 0.00068 19.6 3.4 20 198-217 14-33 (40)
54 3na7_A HP0958; flagellar bioge 52.8 81 0.0028 24.7 13.0 25 36-60 32-56 (256)
55 1pi7_A VPU protein, U ORF prot 51.2 23 0.00078 19.1 3.5 6 213-218 26-31 (36)
56 2l8s_A Integrin alpha-1; trans 50.6 23 0.00079 21.0 3.7 12 209-220 24-36 (54)
57 1m1j_A Fibrinogen alpha subuni 50.5 1.2E+02 0.0042 26.1 10.4 91 3-94 54-154 (491)
58 3zbh_A ESXA; unknown function, 50.4 47 0.0016 21.3 7.5 60 31-90 11-74 (99)
59 3ghg_A Fibrinogen alpha chain; 50.3 85 0.0029 27.6 8.7 42 47-89 114-155 (562)
60 2knc_A Integrin alpha-IIB; tra 49.3 25 0.00084 20.9 3.7 13 208-220 26-39 (54)
61 1t3j_A Mitofusin 1; coiled coi 48.9 57 0.0019 21.7 7.7 10 53-62 50-59 (96)
62 3ol1_A Vimentin; structural ge 48.6 64 0.0022 22.2 10.5 20 1-20 11-30 (119)
63 1yod_A Water-solublized phosph 48.4 26 0.00088 17.7 4.6 25 191-215 4-28 (30)
64 3vou_A ION transport 2 domain 47.1 46 0.0016 23.6 5.8 39 179-217 8-46 (148)
65 2avr_X Adhesion A; antiparalle 46.5 71 0.0024 22.2 11.0 83 4-94 10-97 (119)
66 1v64_A Nucleolar transcription 45.4 67 0.0023 21.6 6.5 55 49-107 42-96 (108)
67 3ghg_B Fibrinogen beta chain; 45.3 1.1E+02 0.0037 26.5 8.5 48 3-51 84-131 (461)
68 2wwb_C SEC61BETA, protein tran 44.8 3.5 0.00012 27.6 -0.6 24 198-221 72-95 (96)
69 3fav_B ESAT-6, 6 kDa early sec 44.6 59 0.002 20.7 8.4 59 36-94 12-81 (94)
70 1q90_R Cytochrome B6-F complex 44.5 45 0.0015 19.3 4.9 19 188-206 8-26 (49)
71 2k1a_A Integrin alpha-IIB; sin 42.5 37 0.0013 19.0 3.6 7 210-216 26-32 (42)
72 3i00_A HIP-I, huntingtin-inter 42.4 83 0.0028 21.8 6.6 53 31-87 10-62 (120)
73 1v54_D Cytochrome C oxidase su 41.5 27 0.00092 25.3 3.7 24 197-220 79-102 (147)
74 2k48_A Nucleoprotein; viral pr 41.4 80 0.0027 21.3 5.9 19 73-91 83-101 (107)
75 3mq9_A Bone marrow stromal ant 41.3 1.6E+02 0.0056 24.9 11.0 25 36-60 397-421 (471)
76 3tul_A Cell invasion protein S 39.0 1.1E+02 0.0036 22.1 9.9 55 38-92 71-127 (158)
77 1gs9_A Apolipoprotein E, APOE4 38.9 1.1E+02 0.0038 22.3 7.3 21 41-61 104-124 (165)
78 2qyw_A Vesicle transport throu 38.6 82 0.0028 21.0 5.6 12 78-89 84-95 (102)
79 1nlw_A MAD protein, MAX dimeri 38.2 76 0.0026 20.2 6.7 16 8-23 12-27 (80)
80 3lay_A Zinc resistance-associa 37.8 1.2E+02 0.0042 22.4 7.5 42 48-89 94-137 (175)
81 3gwk_C SAG1039, putative uncha 37.8 79 0.0027 20.2 8.2 51 40-90 26-80 (98)
82 2p2u_A HOST-nuclease inhibitor 37.7 1.2E+02 0.0041 22.3 7.7 63 36-107 20-82 (171)
83 1gl2_A Endobrevin; membrane pr 37.7 68 0.0023 19.4 5.8 44 135-178 9-52 (65)
84 2jo1_A Phospholemman; FXYD1, N 37.3 39 0.0013 21.1 3.4 12 207-218 28-39 (72)
85 1m1j_C Fibrinogen gamma chain; 37.1 1.9E+02 0.0066 24.5 11.1 26 3-28 27-52 (409)
86 1m56_D Cytochrome C oxidase; m 37.1 43 0.0015 19.5 3.4 7 201-207 34-40 (51)
87 1hs7_A Syntaxin VAM3; UP-and-D 36.9 92 0.0031 20.7 9.9 68 17-90 20-89 (97)
88 3jsv_C NF-kappa-B essential mo 36.8 91 0.0031 20.6 7.3 52 39-90 5-58 (94)
89 3arc_L Photosystem II reaction 36.5 51 0.0017 17.6 3.3 17 201-217 19-35 (37)
90 2klu_A T-cell surface glycopro 36.4 48 0.0016 20.5 3.6 16 201-216 14-29 (70)
91 3trt_A Vimentin; cytoskeleton, 35.7 79 0.0027 19.6 6.7 13 75-87 59-71 (77)
92 2kv5_A FST, putative uncharact 35.5 49 0.0017 17.4 3.1 22 199-220 4-25 (33)
93 3iox_A AGI/II, PA; alpha helix 35.2 2.3E+02 0.0077 24.7 10.6 19 11-29 6-24 (497)
94 1jdm_A Sarcolipin; helix, memb 35.1 40 0.0014 17.1 2.6 11 201-211 12-22 (31)
95 1u2m_A Histone-like protein HL 34.7 21 0.00071 25.3 2.2 23 4-26 31-53 (143)
96 3ghg_C Fibrinogen gamma chain; 34.4 1.7E+02 0.0059 24.8 8.1 27 3-29 27-53 (411)
97 2y69_D Cytochrome C oxidase su 34.4 40 0.0014 25.0 3.7 23 198-220 102-124 (169)
98 2q67_A Potassium channel prote 34.4 92 0.0032 21.0 5.5 36 182-217 8-43 (114)
99 3s4r_A Vimentin; alpha-helix, 34.2 98 0.0034 20.3 10.7 12 4-15 17-28 (93)
100 1rh5_B Preprotein translocase 34.0 89 0.003 19.7 4.8 27 192-218 32-58 (74)
101 4h22_A Leucine-rich repeat fli 33.2 1.1E+02 0.0038 20.6 6.6 59 38-107 32-90 (103)
102 3arc_I Photosystem II reaction 33.0 46 0.0016 18.0 2.8 16 195-210 3-18 (38)
103 4afl_A P29ING4, inhibitor of g 32.9 1.1E+02 0.0036 20.3 7.4 41 36-76 25-69 (104)
104 2ww9_B Protein transport prote 32.4 97 0.0033 19.8 4.8 27 192-218 45-71 (80)
105 1urq_A M-tomosyn isoform; tran 32.3 86 0.0029 19.0 6.8 48 137-184 6-53 (63)
106 4ioe_A Secreted protein ESXB; 32.3 95 0.0032 19.5 9.4 55 30-84 10-68 (93)
107 2v4h_A NF-kappa-B essential mo 31.3 1.2E+02 0.0043 20.6 7.2 53 38-90 26-80 (110)
108 2iub_A CORA, divalent cation t 30.5 2.2E+02 0.0077 23.3 18.2 51 38-91 190-240 (363)
109 2jp3_A FXYD domain-containing 30.1 40 0.0014 20.8 2.5 8 209-216 31-38 (67)
110 3o0z_A RHO-associated protein 29.9 1.7E+02 0.0057 21.6 6.9 58 36-94 90-151 (168)
111 2lx0_A Membrane fusion protein 29.1 60 0.002 16.2 3.3 19 198-216 8-26 (32)
112 1nfn_A Apolipoprotein E3; lipi 29.0 1.7E+02 0.0058 21.8 6.6 17 5-21 33-49 (191)
113 4i0x_B ESAT-6-like protein MAB 28.6 1.2E+02 0.0043 19.7 8.0 57 39-95 28-90 (103)
114 3h6p_C ESAT-6-like protein ESX 28.5 1.1E+02 0.0037 19.6 4.9 53 39-91 16-72 (96)
115 3axj_A GM27569P, translin; tra 28.0 2.2E+02 0.0074 22.3 8.1 31 33-63 68-98 (249)
116 3u1c_A Tropomyosin alpha-1 cha 27.9 1.3E+02 0.0046 19.9 9.7 66 17-91 5-70 (101)
117 4dnd_A Syntaxin-10, SYN10; str 27.9 1.6E+02 0.0054 20.6 7.2 56 36-91 31-93 (130)
118 1skv_A ORF D-63, hypothetical 27.0 1.1E+02 0.0039 18.7 6.1 24 3-26 9-33 (69)
119 3iyk_A VP5; icosahedral virus; 26.8 3.2E+02 0.011 23.8 15.3 15 163-177 256-270 (526)
120 3p8c_F ABL interactor 2; actin 26.5 1E+02 0.0035 22.5 4.7 40 141-180 60-99 (159)
121 3oa7_A Head morphogenesis prot 26.3 1.8E+02 0.0061 22.1 6.0 46 49-95 29-74 (206)
122 2ww9_C Protein transport prote 26.2 39 0.0013 22.1 2.1 22 198-219 63-84 (87)
123 1nkp_A C-MYC, MYC proto-oncoge 26.1 1.4E+02 0.0046 19.3 8.0 48 9-56 18-65 (88)
124 4i0x_A ESAT-6-like protein MAB 25.8 1.3E+02 0.0046 19.2 8.5 58 33-90 4-65 (94)
125 1gd2_E Transcription factor PA 25.7 1.2E+02 0.0042 18.7 5.1 18 36-53 29-46 (70)
126 3mfq_A TROA, high-affinity zin 25.7 2.4E+02 0.0081 22.3 7.3 48 45-92 109-156 (282)
127 3arc_X Photosystem II PSBX pro 25.6 90 0.0031 17.1 3.5 6 209-214 23-28 (39)
128 2ic9_A Nucleocapsid protein; h 25.4 1.5E+02 0.0052 19.6 6.4 21 72-92 52-72 (96)
129 1ic2_A Tropomyosin alpha chain 25.0 1.3E+02 0.0046 18.9 9.4 64 19-91 4-67 (81)
130 2prs_A High-affinity zinc upta 24.6 2.1E+02 0.0072 22.5 6.8 50 45-94 122-171 (284)
131 1pq4_A Periplasmic binding pro 24.5 2.1E+02 0.0072 22.7 6.8 50 45-94 138-187 (291)
132 3cx3_A Lipoprotein; zinc-bindi 24.4 2.1E+02 0.0071 22.5 6.8 50 45-94 125-174 (284)
133 2o1e_A YCDH; alpha-beta protei 24.2 2.1E+02 0.0072 23.0 6.8 50 45-94 138-187 (312)
134 3gi1_A LBP, laminin-binding pr 24.1 2.2E+02 0.0074 22.5 6.8 50 45-94 127-176 (286)
135 3arc_M Photosystem II reaction 24.1 92 0.0032 16.7 3.6 16 203-218 13-28 (36)
136 2v71_A Nuclear distribution pr 24.0 2.3E+02 0.0079 21.2 15.6 25 36-60 42-66 (189)
137 3nmd_A CGMP dependent protein 23.8 1.4E+02 0.0048 18.7 7.5 22 70-91 45-66 (72)
138 3fav_A ESAT-6-like protein ESX 23.7 1.5E+02 0.0052 19.0 8.3 56 35-90 13-72 (101)
139 3onj_A T-snare VTI1; helix, HA 23.7 1.6E+02 0.0055 19.3 6.9 52 41-92 32-86 (97)
140 3oja_A Leucine-rich immune mol 23.4 1.6E+02 0.0055 25.0 6.3 19 41-59 412-430 (487)
141 1toa_A Tromp-1, protein (perip 23.4 2.1E+02 0.0072 23.0 6.6 50 45-94 143-192 (313)
142 2vs0_A Virulence factor ESXA; 23.1 1.5E+02 0.005 18.6 8.2 52 40-91 24-79 (97)
143 3hh8_A Metal ABC transporter s 22.8 2.3E+02 0.0077 22.6 6.7 50 45-94 129-178 (294)
144 2dfs_A Myosin-5A; myosin-V, in 22.3 5.3E+02 0.018 24.8 10.8 87 6-92 952-1043(1080)
145 1svf_B Protein (fusion glycopr 22.2 43 0.0015 18.2 1.5 18 169-186 18-35 (38)
146 1ez3_A Syntaxin-1A; three heli 22.0 1.9E+02 0.0064 19.5 11.3 25 36-60 54-78 (127)
147 3ujp_A Mn transporter subunit; 21.8 2.4E+02 0.0083 22.6 6.7 48 46-93 137-184 (307)
148 4h22_A Leucine-rich repeat fli 21.5 1.9E+02 0.0065 19.4 5.5 52 38-90 4-55 (103)
149 1xvl_A Mn transporter, MNTC pr 21.5 2.5E+02 0.0087 22.6 6.8 48 46-93 151-198 (321)
150 2l7b_A Apolipoprotein E, APO-E 21.5 2.4E+02 0.0083 22.8 6.6 46 36-81 107-152 (307)
151 3mp7_B Preprotein translocase 21.2 1.4E+02 0.0047 18.0 3.8 20 198-217 34-53 (61)
152 2w1k_A Putative sortase; pilus 20.7 21 0.00071 28.3 0.0 22 196-217 223-244 (252)
153 3gwk_C SAG1039, putative uncha 20.7 1.7E+02 0.0058 18.5 7.9 22 5-26 20-41 (98)
154 4ev6_A Magnesium transport pro 20.7 3.4E+02 0.011 21.9 18.5 49 39-90 167-215 (339)
155 2y69_J Cytochrome C oxidase po 20.3 1.5E+02 0.0051 18.9 4.0 22 196-217 49-70 (80)
156 2db7_A Hairy/enhancer-OF-split 20.3 1.6E+02 0.0053 17.9 4.6 44 4-47 15-61 (64)
No 1
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=99.84 E-value=3e-20 Score=130.75 Aligned_cols=89 Identities=25% Similarity=0.327 Sum_probs=85.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhhc-chHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 027611 1 MSQVFEGYERQYCELSAGLSRKCTAASAL-DGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKT 79 (221)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~ 79 (221)
||++|++||++|+.++.+|..++++++.. ++++|+..+.+++..|++|+++|.+|+.|++++|++.|..|..|++.|+.
T Consensus 13 mSelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~ 92 (102)
T 2qyw_A 13 SSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRK 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999876 77999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027611 80 DLNNLKNEVK 89 (221)
Q Consensus 80 ~l~~l~~~~~ 89 (221)
+++.++++|+
T Consensus 93 dL~~lk~elk 102 (102)
T 2qyw_A 93 DLAKLHREVR 102 (102)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHhhcC
Confidence 9999999873
No 2
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=99.82 E-value=3.4e-20 Score=130.52 Aligned_cols=94 Identities=29% Similarity=0.534 Sum_probs=90.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 027611 1 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTD 80 (221)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~ 80 (221)
+|++|++||++|+.++.+|..++.+++..+|++|+..+.+++..|++|+++|.+|++|++++|++.|..|..|++.|+.+
T Consensus 3 sSelFe~YE~df~~l~~~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~d 82 (102)
T 1vcs_A 3 SGSSGEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQE 82 (102)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 027611 81 LNNLKNEVKRVTSG 94 (221)
Q Consensus 81 l~~l~~~~~~~~~~ 94 (221)
++.++++|+++...
T Consensus 83 L~~lk~elk~~~~~ 96 (102)
T 1vcs_A 83 MGKLETDFKRSRIA 96 (102)
T ss_dssp HHHHHHHTHHHHTC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987654
No 3
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.80 E-value=6e-20 Score=123.57 Aligned_cols=79 Identities=35% Similarity=0.593 Sum_probs=75.9
Q ss_pred HHHHHhhhhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 027611 119 QRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDK 197 (221)
Q Consensus 119 ~r~~ll~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk 197 (221)
+|++|+.+++.+++++++|.+|.+++.|||++|.+|+.+|+.|||+|.+++++++++++++++|.++|+.|.||+++||
T Consensus 3 qR~~Ll~~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK 81 (81)
T 2nps_C 3 MRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR 81 (81)
T ss_dssp TTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999999999987
No 4
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=99.80 E-value=7.2e-19 Score=122.61 Aligned_cols=91 Identities=18% Similarity=0.294 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHHH
Q 027611 3 QVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSL--QPNVKAMLLSKLREYKTD 80 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~--~~~~r~~~~~k~~~~~~~ 80 (221)
++|++||.+|+.++.+|..++++++..+|++|+..+..++..+++|.++|.+|++|++++ |++.|..|+.|++.|+.+
T Consensus 1 ~lF~~YE~df~~~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~d 80 (97)
T 3onj_A 1 SLLISYESDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKT 80 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHH-HHHHHHHhhc
Q 027611 81 LNN-LKNEVKRVTS 93 (221)
Q Consensus 81 l~~-l~~~~~~~~~ 93 (221)
++. ++++|+++..
T Consensus 81 l~~~lk~~lk~l~d 94 (97)
T 3onj_A 81 IQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 999 9999998753
No 5
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.58 E-value=2.2e-15 Score=97.00 Aligned_cols=64 Identities=38% Similarity=0.616 Sum_probs=58.3
Q ss_pred hHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHH
Q 027611 128 ERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSR 191 (221)
Q Consensus 128 ~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~r 191 (221)
++|++++++|.+|.+++.|||++|.+|+.+|+.|||+|.+++.+++++++++++|.++|+.|.|
T Consensus 2 ~rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R 65 (65)
T 1gl2_C 2 SHMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR 65 (65)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence 4688999999999999999999999999999999999999999999999999999999999975
No 6
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=99.31 E-value=7.6e-12 Score=83.36 Aligned_cols=67 Identities=13% Similarity=0.278 Sum_probs=63.9
Q ss_pred hhhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHH
Q 027611 125 MSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSR 191 (221)
Q Consensus 125 ~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~r 191 (221)
.++..++++++++.++.+++.||+++|.+|+..|+.|||+|.+++..+++|++++++|.++++.|.+
T Consensus 13 ~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~k 79 (79)
T 1n7s_C 13 RADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLGK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhcC
Confidence 5677889999999999999999999999999999999999999999999999999999999999863
No 7
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=99.04 E-value=3.9e-10 Score=69.57 Aligned_cols=52 Identities=17% Similarity=0.387 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHH
Q 027611 138 KESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAM 189 (221)
Q Consensus 138 ~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m 189 (221)
.++.+++.|++++|..++..|..|+|+|.++...+++|++++++|.++++.|
T Consensus 3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m 54 (54)
T 1nhl_A 3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence 5689999999999999999999999999999999999999999999998764
No 8
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=98.60 E-value=2.3e-07 Score=59.93 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=56.2
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHH
Q 027611 131 NHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSR 191 (221)
Q Consensus 131 ~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~r 191 (221)
+.+..+-.++-+++.|++++|..++..|..|.|+|.++...++.++.++..|.+.++.|..
T Consensus 8 ~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~ 68 (70)
T 3b5n_C 8 QSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455677889999999999999999999999999999999999999999999999998864
No 9
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=98.52 E-value=5.6e-08 Score=64.88 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=57.8
Q ss_pred hhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHH
Q 027611 126 STERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMS 190 (221)
Q Consensus 126 ~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~ 190 (221)
.....+.+..+..++.+++.+++++|..++..|..|+|+|.++...++.|+.++..|.+.++.|.
T Consensus 18 ~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~ 82 (83)
T 1l4a_C 18 CNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGME 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC--
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34456677788999999999999999999999999999999999999999999999999887764
No 10
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.93 E-value=0.00016 Score=50.91 Aligned_cols=81 Identities=10% Similarity=0.086 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 027611 135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTA---MSRRMSRDKWIMGSIISVLVFAI 211 (221)
Q Consensus 135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~---m~rr~~~dk~il~~ii~~l~~~i 211 (221)
..+.+..+.+.|..++-.+...-...|.+.+.++..++..+..++..|++-+++ ..++..+-+|+++++++++++++
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~i~~~i~ 100 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIII 100 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHHHHHHHHH
Confidence 446677778888888888988899999999999999999999999999988854 45555555555554444444434
Q ss_pred HHHH
Q 027611 212 LLIL 215 (221)
Q Consensus 212 ~~vl 215 (221)
.+++
T Consensus 101 ~~~~ 104 (109)
T 3hd7_B 101 ASTI 104 (109)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 3333
No 11
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.89 E-value=0.00042 Score=47.05 Aligned_cols=70 Identities=10% Similarity=0.115 Sum_probs=54.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 133 STDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGS 202 (221)
Q Consensus 133 ~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ 202 (221)
+++.|...+..++|+..+-.+-.+.+-+..|+|....++.++....-..=.+.-+.+.|++.-..+=+++
T Consensus 3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~i 72 (91)
T 3hd7_A 3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMI 72 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466888899999999999999999999999999999998888877766666666666666665433333
No 12
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=97.36 E-value=0.00027 Score=50.38 Aligned_cols=85 Identities=15% Similarity=0.214 Sum_probs=64.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 132 HSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAI 211 (221)
Q Consensus 132 ~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i 211 (221)
.+.+.|...+..++|+..+-....+.+-...|+|....++..++...-..=.+--+++.|+++-.++-++++++++++++
T Consensus 30 ~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~ii 109 (119)
T 2kog_A 30 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAII 109 (119)
T ss_dssp SSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466788888899999999999999999999999999999988777776667777788887766666655555544444
Q ss_pred HHHHH
Q 027611 212 LLILY 216 (221)
Q Consensus 212 ~~vl~ 216 (221)
+++++
T Consensus 110 i~iIi 114 (119)
T 2kog_A 110 LIIII 114 (119)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 44443
No 13
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.34 E-value=0.012 Score=37.00 Aligned_cols=62 Identities=11% Similarity=0.249 Sum_probs=49.8
Q ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHH
Q 027611 129 RLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMS 190 (221)
Q Consensus 129 ~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~ 190 (221)
.+.+..+.|+.....+....++|.+|-.++..|.+.|..+..+++.+...+..+.+-+..+.
T Consensus 3 ~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~ 64 (65)
T 1gl2_D 3 HMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVD 64 (65)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556677888899999999999999999999999999999999999999999987666553
No 14
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=96.29 E-value=0.018 Score=38.00 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=55.5
Q ss_pred hHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHH
Q 027611 128 ERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRM 193 (221)
Q Consensus 128 ~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~ 193 (221)
..+.+....|+.....+....++|..|-.+|..|.+-|..+...++.+...|..+++-+..+.++.
T Consensus 12 ~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~ 77 (82)
T 2nps_D 12 NMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMT 77 (82)
T ss_dssp ------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345556677888999999999999999999999999999999999999999999998888887764
No 15
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=96.15 E-value=0.062 Score=36.16 Aligned_cols=78 Identities=14% Similarity=0.221 Sum_probs=48.9
Q ss_pred hhcchHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 130 LNHSTDRIKESRRTMLETEELG---VSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISV 206 (221)
Q Consensus 130 l~~~~~~L~~s~~~~~ete~~g---~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~ii~~ 206 (221)
+.+....+++.+..+.+..+-- .+-++.|....+.|........ ..|+++=+.|-.+-++=++|+.+++++
T Consensus 7 l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~------~~A~~l~rkmwwkn~K~~iii~~iv~~ 80 (91)
T 3hd7_A 7 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE------TSAAKLKRKYWWKNLKMMIILGVICAI 80 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555554444321 1235567777777766544443 467788889999999999998887777
Q ss_pred HHHHHHH
Q 027611 207 LVFAILL 213 (221)
Q Consensus 207 l~~~i~~ 213 (221)
++++|++
T Consensus 81 il~ii~~ 87 (91)
T 3hd7_A 81 ILIIIIV 87 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 16
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.037 Score=34.68 Aligned_cols=54 Identities=11% Similarity=0.217 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHH
Q 027611 135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTA 188 (221)
Q Consensus 135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~ 188 (221)
..|+....++.-...+|..+-.++..|.+.|.++..+++.++..+..+++-+.+
T Consensus 10 ~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 10 RNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 447777888888899999999999999999999999999999999999875553
No 17
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=95.55 E-value=0.035 Score=37.06 Aligned_cols=61 Identities=8% Similarity=0.152 Sum_probs=53.2
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHH
Q 027611 131 NHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSR 191 (221)
Q Consensus 131 ~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~r 191 (221)
.+....|+.....+.....+|..+-.+|..|.+.|.++..+++.+...+..+++-++.+.+
T Consensus 25 ~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~ 85 (87)
T 1sfc_D 25 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG 85 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 3455668888888999999999999999999999999999999999999999887776543
No 18
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=95.39 E-value=0.067 Score=33.61 Aligned_cols=56 Identities=7% Similarity=0.167 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHH
Q 027611 134 TDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAM 189 (221)
Q Consensus 134 ~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m 189 (221)
...|+.....+....++|..+-.+|..|.+.|.++..+++.+...+..+++-++.+
T Consensus 9 D~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~l 64 (66)
T 1n7s_D 9 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45577778888888999999999999999999999999999999999998766543
No 19
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=94.71 E-value=0.049 Score=36.35 Aligned_cols=58 Identities=10% Similarity=0.190 Sum_probs=50.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHH
Q 027611 133 STDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMS 190 (221)
Q Consensus 133 ~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~ 190 (221)
....|+.....+.....+|..+-.+|..|.+.|.++..+++.++..+..+++-++.+.
T Consensus 28 qD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll 85 (87)
T 1l4a_D 28 MENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLL 85 (87)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455777788888889999999999999999999999999999999999987776553
No 20
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=91.84 E-value=3.2 Score=33.32 Aligned_cols=62 Identities=10% Similarity=0.094 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHH---HHHHHHHHHHH
Q 027611 137 IKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILT---AMSRRMSRDKW 198 (221)
Q Consensus 137 L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~---~m~rr~~~dk~ 198 (221)
+.+..+.+.|..++=.+...-...|.+.|.++..++..+...+..|..-+. ...++..+-||
T Consensus 202 i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~ 266 (267)
T 1dn1_B 202 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 266 (267)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 455555555666666666666779999999999999999888888876665 34444444444
No 21
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.39 E-value=41 Score=36.50 Aligned_cols=100 Identities=13% Similarity=0.155 Sum_probs=66.5
Q ss_pred HHHHhhhhhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHH--HH
Q 027611 120 RGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSR--DK 197 (221)
Q Consensus 120 r~~ll~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~--dk 197 (221)
|+.+......+..+...|...+..+.+.++-=...-.++..-...-......+..+...+.+|.++|....--..+ ..
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~ 2092 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ 2092 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH
Confidence 4445555566777777788888887777765555556666656666777788889999999999999988764322 11
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHh
Q 027611 198 -----WIMGSIISVLVFAILLILYFKL 219 (221)
Q Consensus 198 -----~il~~ii~~l~~~i~~vl~~k~ 219 (221)
--+-.+++=++++-+||.|+-.
T Consensus 2093 ~~~l~~~~~~L~GD~LLaaafisY~G~ 2119 (3245)
T 3vkg_A 2093 SENFNTQMSTVVGDVVLASAFLAYIGF 2119 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHcCC
Confidence 1123345555666667777643
No 22
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=86.06 E-value=1.2 Score=31.38 Aligned_cols=83 Identities=14% Similarity=0.223 Sum_probs=52.3
Q ss_pred hhHhhcchHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 127 TERLNHSTDRIKESRRTMLETEELGVS---ILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSI 203 (221)
Q Consensus 127 ~~~l~~~~~~L~~s~~~~~ete~~g~~---i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~dk~il~~i 203 (221)
.+.+.+....+++.+..+.+..+--.+ -++.|....+.|...- ..--..|+++-+.|-.+-++=++|+.++
T Consensus 32 ~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S------~~F~k~A~kl~rkmwwkn~K~~iii~~i 105 (119)
T 2kog_A 32 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGA------SQFETSAAKLKRKYWWKNLKMMIILGVI 105 (119)
T ss_dssp CSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSS------HHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777777776552211 1234555555444332 2233467778888999999999998877
Q ss_pred HHHHHHHHHHHH
Q 027611 204 ISVLVFAILLIL 215 (221)
Q Consensus 204 i~~l~~~i~~vl 215 (221)
+++++++|++++
T Consensus 106 v~iii~iIi~~~ 117 (119)
T 2kog_A 106 CAIILIIIIVYF 117 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhe
Confidence 777776666554
No 23
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=84.92 E-value=13 Score=29.67 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHH
Q 027611 135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAM 189 (221)
Q Consensus 135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m 189 (221)
..|....+.+.|..++=.+...-...|.+.|.++..++..+..++..|..-+..-
T Consensus 217 ~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA 271 (279)
T 2xhe_B 217 KDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQA 271 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666777777777777777777999999999999999999999998766543
No 24
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=82.92 E-value=6.9 Score=24.90 Aligned_cols=56 Identities=7% Similarity=0.063 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHH
Q 027611 136 RIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSR 191 (221)
Q Consensus 136 ~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~r 191 (221)
.+.+..+.+.|..++=.+...-...|.+.|.++..++..+..++..|..-+..=.+
T Consensus 11 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (77)
T 1jth_B 11 EIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777777788899999999999999999999999988766554
No 25
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=79.54 E-value=13 Score=32.57 Aligned_cols=26 Identities=4% Similarity=0.059 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhh
Q 027611 3 QVFEGYERQYCELSAGLSRKCTAASA 28 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~ 28 (221)
.+....+.+|...+++|...+..+..
T Consensus 53 glLdkqErDltkrINELKnqLEdlsK 78 (562)
T 3ghg_A 53 GLIDEVNQDFTNRINKLKNSLFEYQK 78 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhHHhhcCcHHHHHHHHHHHHHHHHh
Confidence 46788899999999999999988843
No 26
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=79.41 E-value=4.4 Score=23.01 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 190 SRRMSRDKWIMGSIISVLVFAILLIL 215 (221)
Q Consensus 190 ~rr~~~dk~il~~ii~~l~~~i~~vl 215 (221)
.|+-+++-++=+..|++|++.|++++
T Consensus 24 arqnlqelfvnfclilicllli~iiv 49 (52)
T 1fjk_A 24 ARQNLQNLFINFCLILIFLLLICIIV 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555565666666666666666554
No 27
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=75.69 E-value=12 Score=23.33 Aligned_cols=56 Identities=9% Similarity=0.168 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHH
Q 027611 137 IKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRR 192 (221)
Q Consensus 137 L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr 192 (221)
+.+..+.+.|..++=.+...-...|.+.|.++..++..+..++..|..-+..=.+.
T Consensus 8 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 63 (71)
T 2nps_B 8 IQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566667777777777777788999999999999999999999999877655443
No 28
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=75.61 E-value=12 Score=23.23 Aligned_cols=55 Identities=7% Similarity=0.059 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHH
Q 027611 136 RIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMS 190 (221)
Q Consensus 136 ~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~ 190 (221)
.+.+..+.+.|..++=.+...-...|.+.|.++..++..+..++..|..-+.+=.
T Consensus 11 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 65 (69)
T 3b5n_B 11 ELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAV 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777777889999999999999999999999998776543
No 29
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=75.44 E-value=12 Score=23.01 Aligned_cols=52 Identities=10% Similarity=0.221 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHH
Q 027611 137 IKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTA 188 (221)
Q Consensus 137 L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~ 188 (221)
+.+..+.+.|..++=.+...-...|.+.|.++..++..+..++..|..-+.+
T Consensus 11 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k 62 (65)
T 1gl2_B 11 IRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSR 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777899999999999999999999999876653
No 30
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=74.83 E-value=12 Score=23.06 Aligned_cols=53 Identities=8% Similarity=0.060 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHH
Q 027611 136 RIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTA 188 (221)
Q Consensus 136 ~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~ 188 (221)
.+.+..+.+.|..++=.+...-...|.+.|.++..++..+..++..|..-+.+
T Consensus 13 ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~k 65 (68)
T 1n7s_B 13 EIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777777899999999999999999999999876653
No 31
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=74.43 E-value=19 Score=30.32 Aligned_cols=27 Identities=4% Similarity=0.019 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhc
Q 027611 3 QVFEGYERQYCELSAGLSRKCTAASAL 29 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~ 29 (221)
.+..+.+++|+.-+++|...|..+...
T Consensus 56 g~Ldk~er~~~~rIe~L~~~L~~~s~s 82 (390)
T 1deq_A 56 GLIDEVDQDFTSRINKLRDSLFNYQKN 82 (390)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 467788888999999999888887543
No 32
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=74.32 E-value=17 Score=24.30 Aligned_cols=64 Identities=11% Similarity=0.155 Sum_probs=51.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHHH
Q 027611 132 HSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSR 195 (221)
Q Consensus 132 ~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~~ 195 (221)
.+.+.|...+..++|+..+-...++.+-...|.|....++..++...-..=.+--+.+.|+++-
T Consensus 27 ~~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmww 90 (96)
T 1sfc_A 27 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 90 (96)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788899999999999999999999999999999988888777666655556666666543
No 33
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=74.07 E-value=28 Score=26.76 Aligned_cols=77 Identities=12% Similarity=0.075 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 10 RQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVK 89 (221)
Q Consensus 10 ~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~ 89 (221)
.++..--..+..+|+++|..=+ +|...+.-|+.-=...+.+++....-....|+..+ ..+.+.+.++=.+.+.|-
T Consensus 94 qel~~rA~~LK~iLSrIPdEI~-dR~~FL~tIKeIAsaIKklLDAvn~v~~~~~~~~k----~~le~~KreFVkySKrFS 168 (213)
T 3ajm_A 94 QDLNEKARALKQILSKIPDEIN-DRVRFLQTIKDIASAIKELLDTVNNVFKKYQYQNR----RALEHQKKEFVKYSKSFS 168 (213)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhhc-chHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH----HHHHHHHHHHHHHhhHhh
Confidence 4455555667788888876433 35555555555555556666666665666666543 444555666666666665
Q ss_pred Hh
Q 027611 90 RV 91 (221)
Q Consensus 90 ~~ 91 (221)
..
T Consensus 169 ~T 170 (213)
T 3ajm_A 169 DT 170 (213)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 34
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=73.71 E-value=44 Score=28.96 Aligned_cols=27 Identities=11% Similarity=0.033 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhc
Q 027611 3 QVFEGYERQYCELSAGLSRKCTAASAL 29 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~ 29 (221)
+.|..|++.++.-+++++..+..+...
T Consensus 89 D~L~k~q~~V~~~LqeLe~~l~~lsn~ 115 (464)
T 1m1j_B 89 TTLLKQEKTVKPVLRDLKDRVAKFSDT 115 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHhHHHHHHHHHHHHhhh
Confidence 567789999999999999999988653
No 35
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=72.53 E-value=17 Score=23.55 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=10.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHh
Q 027611 38 LSEIKTGLDDADALIRKMDLEAR 60 (221)
Q Consensus 38 ~~~~~~~l~ea~~~l~~m~~E~~ 60 (221)
+..++.++++|-+.|..+..|+.
T Consensus 8 leqLE~KIq~avdtI~lLqmEie 30 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIE 30 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 36
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=72.47 E-value=4 Score=26.40 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027611 201 GSIISVLVFAILLILYFKL 219 (221)
Q Consensus 201 ~~ii~~l~~~i~~vl~~k~ 219 (221)
..+.+++++++++++.+|+
T Consensus 16 gvi~gilliGllllliwk~ 34 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWKL 34 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555554
No 37
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=71.84 E-value=3.9 Score=23.28 Aligned_cols=13 Identities=15% Similarity=0.391 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 027611 205 SVLVFAILLILYF 217 (221)
Q Consensus 205 ~~l~~~i~~vl~~ 217 (221)
+++++++++.+|+
T Consensus 23 l~vi~~l~~~~~~ 35 (44)
T 2jwa_A 23 LVVVLGVVFGILI 35 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhe
Confidence 3333334444444
No 38
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=71.78 E-value=33 Score=26.61 Aligned_cols=59 Identities=7% Similarity=0.078 Sum_probs=45.2
Q ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHH
Q 027611 129 RLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILT 187 (221)
Q Consensus 129 ~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~ 187 (221)
.+......+......+.+..++-.++......|.+.+..+...+..+...+..+..-+.
T Consensus 206 ~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~ 264 (279)
T 3c98_B 206 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 264 (279)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667888888888888889999999999999999999999888877766654443
No 39
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=71.73 E-value=5.2 Score=22.77 Aligned_cols=24 Identities=17% Similarity=0.444 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 027611 198 WIMGSIISVLVFAILLILYFKLTR 221 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~k~~~ 221 (221)
.|..+++.++++.++.++++-|+|
T Consensus 13 ~Ia~~vVGvll~vi~~l~~~~~~R 36 (44)
T 2jwa_A 13 SIISAVVGILLVVVLGVVFGILIK 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhhee
Confidence 466777777777777777776654
No 40
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=71.68 E-value=5.3 Score=22.56 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027611 202 SIISVLVFAILLILYFKL 219 (221)
Q Consensus 202 ~ii~~l~~~i~~vl~~k~ 219 (221)
.+.+++++++++++.+|+
T Consensus 16 vi~~ivliGl~lLliwk~ 33 (43)
T 2k9j_B 16 VMGAILLIGLAALLIWKL 33 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455566666666665
No 41
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=71.62 E-value=14 Score=22.38 Aligned_cols=59 Identities=10% Similarity=0.186 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHH
Q 027611 134 TDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRR 192 (221)
Q Consensus 134 ~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr 192 (221)
.+.|...+..++|+..+-......+-...|.|....++..++...-..=.+--+.+.|+
T Consensus 3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~ 61 (63)
T 1n7s_A 3 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677788889999999999999998888999888888877766554444444444444
No 42
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=70.21 E-value=15 Score=22.13 Aligned_cols=59 Identities=10% Similarity=0.104 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHH
Q 027611 135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRM 193 (221)
Q Consensus 135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~ 193 (221)
+.|...+..++|+..+-....+.+-...|.|....++..++...-..=.+--+.+.|++
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~m 60 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAM 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45777888889999999999999988889998888887776665544444445554443
No 43
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=69.34 E-value=22 Score=23.65 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=44.6
Q ss_pred Cc-hhHHHHHHHHHHHHHHHHHHhhhhhhcc----hHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 027611 1 MS-QVFEGYERQYCELSAGLSRKCTAASALD----GELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLR 75 (221)
Q Consensus 1 Ms-~~f~~ye~e~~~~~~~i~~~l~~~~~~~----~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~ 75 (221)
|| +=|....+++...+..+...+..-+..+ ..+-...+.+++..|+++...+.-++.. ....-..|.. .+.
T Consensus 3 ~s~DPF~~V~~D~~~ql~~l~~~~~~~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~-~~~EI~~Rk~---~v~ 78 (95)
T 2c5k_T 3 NSEDPFQQVVKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD-ENEDVSGREA---QVK 78 (95)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-TTCCCHHHHH---HHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHH---HHH
Confidence 44 6788889999998888888876542211 1223344444555554444444443322 1111233433 344
Q ss_pred HHHHHHHHHHHHHH
Q 027611 76 EYKTDLNNLKNEVK 89 (221)
Q Consensus 76 ~~~~~l~~l~~~~~ 89 (221)
..+.+++.++..+.
T Consensus 79 ~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 79 NIKQQLDALKLRFD 92 (95)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 45666666666653
No 44
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=66.70 E-value=26 Score=23.43 Aligned_cols=53 Identities=13% Similarity=0.233 Sum_probs=29.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCChhH--HHHHHHHHHHHHHHHHHHHHHH
Q 027611 36 QKLSEIKTGLDDADALIRKMDLEARSLQPNV--KAMLLSKLREYKTDLNNLKNEV 88 (221)
Q Consensus 36 ~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~--r~~~~~k~~~~~~~l~~l~~~~ 88 (221)
.+...++....+++.-+++|+.|+..+.... -..+++|......+|+.+...|
T Consensus 40 rLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~~y 94 (96)
T 1t3j_A 40 RLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSKQF 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555556666555544322 1346666666666676666655
No 45
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=64.21 E-value=26 Score=22.62 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=15.6
Q ss_pred Cc-hhHHHHHHHHHHHHHHHHH
Q 027611 1 MS-QVFEGYERQYCELSAGLSR 21 (221)
Q Consensus 1 Ms-~~f~~ye~e~~~~~~~i~~ 21 (221)
|| ++|+..+.-+...++.|.-
T Consensus 3 MS~ElleqLE~KIq~avdtI~l 24 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTITL 24 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 66 7888888877777776655
No 46
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=63.96 E-value=26 Score=22.50 Aligned_cols=55 Identities=7% Similarity=0.048 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHH
Q 027611 136 RIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMS 190 (221)
Q Consensus 136 ~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~ 190 (221)
.+....+.+.|..++=.+...-...|.+.|.++..++..+..++..|..-+.+=.
T Consensus 22 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 76 (83)
T 1sfc_B 22 EIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666667777777777777777889999999999999999999999987776543
No 47
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=62.17 E-value=38 Score=23.85 Aligned_cols=58 Identities=10% Similarity=0.014 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhc----c---hHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 027611 3 QVFEGYERQYCELSAGLSRKCTAASAL----D---GELKKQKLSEIKTGLDDADALIRKMDLEAR 60 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~----~---~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~ 60 (221)
+=|-...+|+...+..+...+.+.... + ..+-...-++++..|+.++..|..++.-++
T Consensus 27 DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ 91 (130)
T 4dnd_A 27 DPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIG 91 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888889999999888888886321 1 124455666777777777777777776665
No 48
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=60.82 E-value=20 Score=22.49 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHHH
Q 027611 135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMS 194 (221)
Q Consensus 135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~~ 194 (221)
+.|...+..++|+..+-...++.+-.-.|.|....++..++...-..=.+--+.+.|+++
T Consensus 8 d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~w 67 (74)
T 2nps_A 8 DKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMW 67 (74)
T ss_dssp SSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777788888888888888888888877777766665555555555555543
No 49
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=59.12 E-value=15 Score=18.11 Aligned_cols=18 Identities=11% Similarity=0.370 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 027611 203 IISVLVFAILLILYFKLT 220 (221)
Q Consensus 203 ii~~l~~~i~~vl~~k~~ 220 (221)
+.++++.+...|+.|-|+
T Consensus 8 ~lLIviav~aaVllylW~ 25 (26)
T 3j1r_A 8 LLLILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333344444444444443
No 50
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=57.78 E-value=39 Score=22.53 Aligned_cols=24 Identities=21% Similarity=0.186 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhh
Q 027611 4 VFEGYERQYCELSAGLSRKCTAAS 27 (221)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~~ 27 (221)
.+++|-+.+..+=.++.+.+..+.
T Consensus 5 yledyld~ie~LP~El~r~~~~ir 28 (104)
T 4afl_A 5 YLEHYLDSIENLPFELQRNFQLMR 28 (104)
T ss_dssp HHHHHHHSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHH
Confidence 455555555555555555555443
No 51
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=57.33 E-value=18 Score=23.21 Aligned_cols=59 Identities=7% Similarity=0.170 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHHHHHHHHHHH
Q 027611 135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRM 193 (221)
Q Consensus 135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~li~~m~rr~ 193 (221)
+.|...+..++|+..+-...++.+-...|.|....++..++...-..=.+--+.+.|++
T Consensus 15 d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~ 73 (80)
T 1l4a_A 15 KRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKF 73 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777888888888888888888888888888888887777665544444445555443
No 52
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=59.09 E-value=2.7 Score=23.15 Aligned_cols=15 Identities=20% Similarity=0.718 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 027611 203 IISVLVFAILLILYF 217 (221)
Q Consensus 203 ii~~l~~~i~~vl~~ 217 (221)
+|+++.+++.+++|.
T Consensus 19 vi~iisLIiLi~~w~ 33 (39)
T 2l6w_A 19 VLTIISLIILIMLWQ 33 (39)
Confidence 333344444444444
No 53
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=53.51 E-value=20 Score=19.64 Aligned_cols=20 Identities=30% Similarity=0.354 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027611 198 WIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~ 217 (221)
+|.+++++-.+.+|+++-|.
T Consensus 14 lII~~vmaGiIG~IllI~y~ 33 (40)
T 1afo_A 14 LIIFGVMAGVIGTILLISYG 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555543
No 54
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=52.81 E-value=81 Score=24.67 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=12.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHh
Q 027611 36 QKLSEIKTGLDDADALIRKMDLEAR 60 (221)
Q Consensus 36 ~~~~~~~~~l~ea~~~l~~m~~E~~ 60 (221)
..+..++..+..+..-+.....++.
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~ 56 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKL 56 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555554444444
No 55
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=51.24 E-value=23 Score=19.13 Aligned_cols=6 Identities=17% Similarity=-0.236 Sum_probs=2.3
Q ss_pred HHHHHH
Q 027611 213 LILYFK 218 (221)
Q Consensus 213 ~vl~~k 218 (221)
++-|.|
T Consensus 26 ~ieYrk 31 (36)
T 1pi7_A 26 IIEGRG 31 (36)
T ss_pred HHHHHH
Confidence 333433
No 56
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=50.60 E-value=23 Score=20.98 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=5.6
Q ss_pred HHHHHHHHH-Hhc
Q 027611 209 FAILLILYF-KLT 220 (221)
Q Consensus 209 ~~i~~vl~~-k~~ 220 (221)
+++++++|. -||
T Consensus 24 ~Lii~~LwK~GFF 36 (54)
T 2l8s_A 24 MLLILALWKIGFF 36 (54)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcc
Confidence 344455553 344
No 57
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=50.50 E-value=1.2e+02 Score=26.10 Aligned_cols=91 Identities=11% Similarity=0.156 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhcchH------HHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCh----hHHHHHHH
Q 027611 3 QVFEGYERQYCELSAGLSRKCTAASALDGE------LKKQKLSEIKTGLDDADALIRKMDLEARSLQP----NVKAMLLS 72 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~------~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~----~~r~~~~~ 72 (221)
.+...-++++..-+++|.+.+..+.....+ .-...++.-.+..+.-++.+.++-.+++.--. ..-..+ +
T Consensus 54 glL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi-~ 132 (491)
T 1m1j_A 54 GIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQV-N 132 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 466788999999999999999888544322 11122333333333344444444444432110 111112 4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 027611 73 KLREYKTDLNNLKNEVKRVTSG 94 (221)
Q Consensus 73 k~~~~~~~l~~l~~~~~~~~~~ 94 (221)
.++-++..+.++..+++++...
T Consensus 133 ~IrvLq~~l~~q~skIQRLE~d 154 (491)
T 1m1j_A 133 RIKALQNSIQEQVVEMKRLEVD 154 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555443
No 58
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=50.41 E-value=47 Score=21.25 Aligned_cols=60 Identities=8% Similarity=0.175 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 31 GELKKQKLSEIKTGLDDADALIRKMDLEARS----LQPNVKAMLLSKLREYKTDLNNLKNEVKR 90 (221)
Q Consensus 31 ~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~----~~~~~r~~~~~k~~~~~~~l~~l~~~~~~ 90 (221)
|++-......+...-.+++..+..|...+.. ........|.....+.+..+..+...+..
T Consensus 11 ~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~ 74 (99)
T 3zbh_A 11 PEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNE 74 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444433 22333344555444444444444444433
No 59
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=50.25 E-value=85 Score=27.59 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 47 DADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVK 89 (221)
Q Consensus 47 ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~ 89 (221)
+++..+..|+.+|.+.- .....|+..|+..+.+++.|+.++.
T Consensus 114 ELRRrIqyLKekVdnQl-snIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777776533 2234566666666666666665553
No 60
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=49.30 E-value=25 Score=20.87 Aligned_cols=13 Identities=8% Similarity=0.230 Sum_probs=5.9
Q ss_pred HHHHHHHHHH-Hhc
Q 027611 208 VFAILLILYF-KLT 220 (221)
Q Consensus 208 ~~~i~~vl~~-k~~ 220 (221)
+.++++++|. -||
T Consensus 26 L~li~~~LwK~GFF 39 (54)
T 2knc_A 26 LTILVLAMWKVGFF 39 (54)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcc
Confidence 3344455553 344
No 61
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=48.87 E-value=57 Score=21.75 Aligned_cols=10 Identities=20% Similarity=0.401 Sum_probs=4.0
Q ss_pred HHHHHHHhcC
Q 027611 53 RKMDLEARSL 62 (221)
Q Consensus 53 ~~m~~E~~~~ 62 (221)
+.|+.|+..+
T Consensus 50 ~eL~~EI~~L 59 (96)
T 1t3j_A 50 KHLEEEIARL 59 (96)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 62
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=48.59 E-value=64 Score=22.24 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=9.9
Q ss_pred CchhHHHHHHHHHHHHHHHH
Q 027611 1 MSQVFEGYERQYCELSAGLS 20 (221)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~ 20 (221)
||.++.-|+.++..+-.+|.
T Consensus 11 ~~~~~~~ye~~I~~LR~qid 30 (119)
T 3ol1_A 11 MSRLGDLYEEEMRELRRQVD 30 (119)
T ss_dssp --CCTHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 45555566666555544443
No 63
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=48.37 E-value=26 Score=17.66 Aligned_cols=25 Identities=8% Similarity=-0.019 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 191 RRMSRDKWIMGSIISVLVFAILLIL 215 (221)
Q Consensus 191 rr~~~dk~il~~ii~~l~~~i~~vl 215 (221)
|+-+++-++=+..+.+|+..+.+++
T Consensus 4 rqNlQ~LfvNfcLilICllLi~Iiv 28 (30)
T 1yod_A 4 RQNLQNLYINRCLREICQELKEIRA 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555565665656666655555443
No 64
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=47.06 E-value=46 Score=23.62 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 179 ISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 179 l~~a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~ 217 (221)
+...+++++.+.+-.....+++++++++++++++.++|+
T Consensus 8 ~~~l~rl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 46 (148)
T 3vou_A 8 ILTLKRMLKACLRAWKDKEFQVLFVLTFLTLTSGTIFYS 46 (148)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777765555566666666666666666664
No 65
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=46.52 E-value=71 Score=22.17 Aligned_cols=83 Identities=13% Similarity=0.240 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-----hhHHHHHHHHHHHHH
Q 027611 4 VFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQ-----PNVKAMLLSKLREYK 78 (221)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~-----~~~r~~~~~k~~~~~ 78 (221)
.|+..|.+|..|...=...+. ++..........|.+-..+...++--...++ .-.+++|..-++.|+
T Consensus 10 ~l~~LEaeyq~L~~kE~qryn--------qeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk 81 (119)
T 2avr_X 10 ELQALDAEYQNLANQEEARFN--------EERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYE 81 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 455666666665544444332 2333344444555554444333333222222 233678999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 027611 79 TDLNNLKNEVKRVTSG 94 (221)
Q Consensus 79 ~~l~~l~~~~~~~~~~ 94 (221)
.-++.|..+++.....
T Consensus 82 ~~~~~Ld~eI~~qe~i 97 (119)
T 2avr_X 82 DALKKLEAEMEQQKAV 97 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999888775443
No 66
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=45.40 E-value=67 Score=21.57 Aligned_cols=55 Identities=11% Similarity=0.018 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHhhcc
Q 027611 49 DALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLES 107 (221)
Q Consensus 49 ~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~ 107 (221)
.++.+.+-..++.++..++..|.......+..+..--..+..... +.+|.+|++.
T Consensus 42 ~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~----~~~r~~~~~~ 96 (108)
T 1v64_A 42 TERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLP----EEEQQRVLGE 96 (108)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----HHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----HHHHHHHHhc
Confidence 345566677889999999988887765544444433333333221 2467888765
No 67
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=45.28 E-value=1.1e+02 Score=26.48 Aligned_cols=48 Identities=15% Similarity=0.032 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHH
Q 027611 3 QVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADAL 51 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~ 51 (221)
+.+-.|+...+.-+.+++..+..+.+... +-...+..++......+..
T Consensus 84 d~L~kye~~V~~dl~~Le~~l~~isn~Ts-~a~~~v~~ik~s~~~~q~~ 131 (461)
T 3ghg_B 84 EALLQQERPIRNSVDELNNNVEAVSQTSS-SSFQYMYLLKDLWQKRQKQ 131 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchhhHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhccccCC
Confidence 45778999999999999999999965432 2334444455444444433
No 68
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=44.84 E-value=3.5 Score=27.64 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 027611 198 WIMGSIISVLVFAILLILYFKLTR 221 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~k~~~ 221 (221)
.++++-+++.++++++-+|.||.|
T Consensus 72 ~VLv~sl~Fi~~Vi~Lhi~~K~~r 95 (96)
T 2wwb_C 72 PVLVMSLLFIASVFMLHIWGKYTR 95 (96)
T ss_dssp SHHHHHHHHHHHHHHHSCSSSCCC
T ss_pred EehhhHHHHHHHHHHHHHhhhhcc
Confidence 444444445555555566666654
No 69
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=44.64 E-value=59 Score=20.71 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=30.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCh----hH-------HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027611 36 QKLSEIKTGLDDADALIRKMDLEARSLQP----NV-------KAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (221)
Q Consensus 36 ~~~~~~~~~l~ea~~~l~~m~~E~~~~~~----~~-------r~~~~~k~~~~~~~l~~l~~~~~~~~~~ 94 (221)
.....+...-.+++..+..|+..+..+.. .. ...|......+..-|..+...+......
T Consensus 12 ~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i~~~l~~~~~~ 81 (94)
T 3fav_B 12 AAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQA 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666655431 11 2345555555555555555555554433
No 70
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=44.49 E-value=45 Score=19.28 Aligned_cols=19 Identities=16% Similarity=0.087 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027611 188 AMSRRMSRDKWIMGSIISV 206 (221)
Q Consensus 188 ~m~rr~~~dk~il~~ii~~ 206 (221)
.|.||..-|++.+..+-++
T Consensus 8 dm~RRqfln~l~~G~~a~~ 26 (49)
T 1q90_R 8 DMNKRNIMNLILAGGAGLP 26 (49)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 4899999999888544333
No 71
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=42.48 E-value=37 Score=18.96 Aligned_cols=7 Identities=14% Similarity=0.662 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 027611 210 AILLILY 216 (221)
Q Consensus 210 ~i~~vl~ 216 (221)
.+++++|
T Consensus 26 li~~~Lw 32 (42)
T 2k1a_A 26 ILVLAMW 32 (42)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444555
No 72
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=42.42 E-value=83 Score=21.81 Aligned_cols=53 Identities=15% Similarity=0.230 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 027611 31 GELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNE 87 (221)
Q Consensus 31 ~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~ 87 (221)
+++|...+..+...++.+..-+..+..|.+..+. .|..++..+..++..-+..
T Consensus 10 ~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~----ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 10 KDEKDHLIERLYREISGLKAQLENMKTESQRVVL----QLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888888887776543 3555555555555555433
No 73
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=41.51 E-value=27 Score=25.28 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 027611 197 KWIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 197 k~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
|-|+.++++++.+.+++++|.+.+
T Consensus 79 K~v~g~v~~~i~~s~~~f~~~r~~ 102 (147)
T 1v54_D 79 KTVVGAAMFFIGFTALLLIWEKHY 102 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777777776643
No 74
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=41.41 E-value=80 Score=21.32 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027611 73 KLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 73 k~~~~~~~l~~l~~~~~~~ 91 (221)
-+..++..+.++++.+...
T Consensus 83 ~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 83 AVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666554
No 75
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=41.26 E-value=1.6e+02 Score=24.86 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=12.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHh
Q 027611 36 QKLSEIKTGLDDADALIRKMDLEAR 60 (221)
Q Consensus 36 ~~~~~~~~~l~ea~~~l~~m~~E~~ 60 (221)
+.-..++..|.+++..+.+.+..+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAA 421 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 3334445555555555555444443
No 76
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=39.04 E-value=1.1e+02 Score=22.09 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=32.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCChh--HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027611 38 LSEIKTGLDDADALIRKMDLEARSLQPN--VKAMLLSKLREYKTDLNNLKNEVKRVT 92 (221)
Q Consensus 38 ~~~~~~~l~ea~~~l~~m~~E~~~~~~~--~r~~~~~k~~~~~~~l~~l~~~~~~~~ 92 (221)
+...+..+..++.-+++.+.++..+.|. ...+...-+.+.+.++..+++.+.++-
T Consensus 71 ~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~ 127 (158)
T 3tul_A 71 TDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKAT 127 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666667777777776553 234556666777777777777776653
No 77
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=38.90 E-value=1.1e+02 Score=22.31 Aligned_cols=21 Identities=10% Similarity=0.230 Sum_probs=8.9
Q ss_pred HHhhHHHHHHHHHHHHHHHhc
Q 027611 41 IKTGLDDADALIRKMDLEARS 61 (221)
Q Consensus 41 ~~~~l~ea~~~l~~m~~E~~~ 61 (221)
+...+++++.-+..+-.|++.
T Consensus 104 L~~d~EelR~~l~p~~~el~~ 124 (165)
T 1gs9_A 104 LGADMEDVRGRLVQYRGEVQA 124 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 78
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=38.55 E-value=82 Score=20.98 Aligned_cols=12 Identities=17% Similarity=0.454 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 027611 78 KTDLNNLKNEVK 89 (221)
Q Consensus 78 ~~~l~~l~~~~~ 89 (221)
...+..|+.++.
T Consensus 84 ~~klr~Yk~dL~ 95 (102)
T 2qyw_A 84 MSKLRNYRKDLA 95 (102)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 79
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=38.23 E-value=76 Score=20.17 Aligned_cols=16 Identities=6% Similarity=-0.207 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 027611 8 YERQYCELSAGLSRKC 23 (221)
Q Consensus 8 ye~e~~~~~~~i~~~l 23 (221)
...+++..+..+...+
T Consensus 12 RR~~lk~~f~~Lr~~v 27 (80)
T 1nlw_A 12 RRAHLRLSLEKLKGLV 27 (80)
T ss_dssp HHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3445555566555544
No 80
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=37.83 E-value=1.2e+02 Score=22.42 Aligned_cols=42 Identities=2% Similarity=-0.059 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 48 ADALIRKMDLEARSLQ--PNVKAMLLSKLREYKTDLNNLKNEVK 89 (221)
Q Consensus 48 a~~~l~~m~~E~~~~~--~~~r~~~~~k~~~~~~~l~~l~~~~~ 89 (221)
+...-.+|..++..-+ ++.=.++..++...+.++...+-++.
T Consensus 94 l~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~ 137 (175)
T 3lay_A 94 LISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRD 137 (175)
T ss_dssp HHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555554322 22223455666666666665554443
No 81
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=37.83 E-value=79 Score=20.23 Aligned_cols=51 Identities=12% Similarity=0.079 Sum_probs=21.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 40 EIKTGLDDADALIRKMDLEARSLQP----NVKAMLLSKLREYKTDLNNLKNEVKR 90 (221)
Q Consensus 40 ~~~~~l~ea~~~l~~m~~E~~~~~~----~~r~~~~~k~~~~~~~l~~l~~~~~~ 90 (221)
+++..+..+...+..|...+..-.. ..-..|...+.++...|..+...+..
T Consensus 26 ~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~ 80 (98)
T 3gwk_C 26 QVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLK 80 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443221 11123444444444444444444443
No 82
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=37.71 E-value=1.2e+02 Score=22.27 Aligned_cols=63 Identities=17% Similarity=0.161 Sum_probs=35.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHhhcc
Q 027611 36 QKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLES 107 (221)
Q Consensus 36 ~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~ 107 (221)
..+.++-..-.+...+-..|+.|+. ..+..|...+..+....+.+...+..... .+|++||..
T Consensus 20 ~alr~ia~l~r~~~~i~~~~n~eI~----~ik~~~~~~~~~l~~~i~~l~~~l~~y~e-----~~r~elf~k 82 (171)
T 2p2u_A 20 GALAEIATIDRKVGEIEAQMNEAID----AAKARASQKSAPLLARRKELEDGVATFAT-----LNKTEMFKD 82 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHhcCC
Confidence 3333333333333333344444443 33456777777788888888777776653 367888764
No 83
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=37.65 E-value=68 Score=19.42 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhh
Q 027611 135 DRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDN 178 (221)
Q Consensus 135 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~ 178 (221)
+.|...+..++|+..|-..-+..+-...|.|....++..++...
T Consensus 9 d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~ 52 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEAT 52 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44667788888888888888888888888888777776665443
No 84
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=37.30 E-value=39 Score=21.10 Aligned_cols=12 Identities=25% Similarity=0.642 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 027611 207 LVFAILLILYFK 218 (221)
Q Consensus 207 l~~~i~~vl~~k 218 (221)
++++|++++.-|
T Consensus 28 fi~GI~iilS~K 39 (72)
T 2jo1_A 28 FILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCc
Confidence 334444444444
No 85
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=37.13 E-value=1.9e+02 Score=24.50 Aligned_cols=26 Identities=12% Similarity=0.038 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhh
Q 027611 3 QVFEGYERQYCELSAGLSRKCTAASA 28 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~ 28 (221)
+.+..|+..+..-+.+++..+..+.+
T Consensus 27 d~L~k~e~~V~~~l~~LE~~l~elsn 52 (409)
T 1m1j_C 27 DFFNKYRLTTDGELLEIEGLLQQATN 52 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 34566777666666666666666644
No 86
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=37.07 E-value=43 Score=19.52 Aligned_cols=7 Identities=0% Similarity=0.159 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 027611 201 GSIISVL 207 (221)
Q Consensus 201 ~~ii~~l 207 (221)
|+.+++.
T Consensus 34 ~gt~~~~ 40 (51)
T 1m56_D 34 WAAVVIV 40 (51)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 87
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=36.94 E-value=92 Score=20.73 Aligned_cols=68 Identities=13% Similarity=0.183 Sum_probs=34.6
Q ss_pred HHHHHHhhhhhhcchHHHHHHHHHHHhhHH-HHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 17 AGLSRKCTAASALDGELKKQKLSEIKTGLD-DADALIRKMDLEARSLQP-NVKAMLLSKLREYKTDLNNLKNEVKR 90 (221)
Q Consensus 17 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~-ea~~~l~~m~~E~~~~~~-~~r~~~~~k~~~~~~~l~~l~~~~~~ 90 (221)
..++....++......+ ++...|+ ++..-+.+|..+++.++. +.+..+...+......+..+++.|..
T Consensus 20 q~l~k~~~qlGTkrD~~------~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~~qr~y~e 89 (97)
T 1hs7_A 20 RVLEKECTKIGSKRDSK------ELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQSLQQSYNQ 89 (97)
T ss_dssp HHHHHHHHHTTSSSCCH------HHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcchH------HHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555554322111 2455555 555666666666665443 23445555555555555555555543
No 88
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=36.83 E-value=91 Score=20.64 Aligned_cols=52 Identities=10% Similarity=0.200 Sum_probs=29.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCh--hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 39 SEIKTGLDDADALIRKMDLEARSLQP--NVKAMLLSKLREYKTDLNNLKNEVKR 90 (221)
Q Consensus 39 ~~~~~~l~ea~~~l~~m~~E~~~~~~--~~r~~~~~k~~~~~~~l~~l~~~~~~ 90 (221)
..+...|..|++.+..+...+..+.. .....-..++.-++....-|+.+|..
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~a 58 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQA 58 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666655554432 11223346666666677777777765
No 89
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=36.47 E-value=51 Score=17.61 Aligned_cols=17 Identities=35% Similarity=0.669 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027611 201 GSIISVLVFAILLILYF 217 (221)
Q Consensus 201 ~~ii~~l~~~i~~vl~~ 217 (221)
|++++++++++.|--|+
T Consensus 19 ~GLLlifvlavlFssyf 35 (37)
T 3arc_L 19 LGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhc
Confidence 46666666665555544
No 90
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=36.38 E-value=48 Score=20.47 Aligned_cols=16 Identities=19% Similarity=0.104 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 027611 201 GSIISVLVFAILLILY 216 (221)
Q Consensus 201 ~~ii~~l~~~i~~vl~ 216 (221)
.+.++.+++.+++.+|
T Consensus 14 lGg~~~lll~~glcI~ 29 (70)
T 2klu_A 14 LGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH
Confidence 3333333333333333
No 91
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=35.73 E-value=79 Score=19.63 Aligned_cols=13 Identities=31% Similarity=0.603 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 027611 75 REYKTDLNNLKNE 87 (221)
Q Consensus 75 ~~~~~~l~~l~~~ 87 (221)
.+++..+..|..+
T Consensus 59 ~elrr~iq~L~~e 71 (77)
T 3trt_A 59 TEYRRQVQSLTME 71 (77)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 92
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=35.51 E-value=49 Score=17.36 Aligned_cols=22 Identities=14% Similarity=0.360 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 027611 199 IMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 199 il~~ii~~l~~~i~~vl~~k~~ 220 (221)
|+..||+=+++++++-++-+|.
T Consensus 4 i~~~IIaPivVGvvl~L~d~WL 25 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLEMISRVL 25 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777764
No 93
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=35.21 E-value=2.3e+02 Score=24.72 Aligned_cols=19 Identities=5% Similarity=0.030 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhhhhhhc
Q 027611 11 QYCELSAGLSRKCTAASAL 29 (221)
Q Consensus 11 e~~~~~~~i~~~l~~~~~~ 29 (221)
++..-+..-+..+.++...
T Consensus 6 ~yq~~la~yq~elarvqka 24 (497)
T 3iox_A 6 DYQAKLTAYQTELARVQKA 24 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444433
No 94
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=35.11 E-value=40 Score=17.10 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 027611 201 GSIISVLVFAI 211 (221)
Q Consensus 201 ~~ii~~l~~~i 211 (221)
+.+++++++.+
T Consensus 12 Ft~vLI~vlLi 22 (31)
T 1jdm_A 12 FTIVLITVILM 22 (31)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 95
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=34.71 E-value=21 Score=25.28 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh
Q 027611 4 VFEGYERQYCELSAGLSRKCTAA 26 (221)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~ 26 (221)
.|..|..++.....+++.....+
T Consensus 31 ~~~~~~~el~~~~~el~~~~~~l 53 (143)
T 1u2m_A 31 EFKGRASELQRMETDLQAKMKKL 53 (143)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445544444444444333
No 96
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=34.41 E-value=1.7e+02 Score=24.85 Aligned_cols=27 Identities=7% Similarity=0.022 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhc
Q 027611 3 QVFEGYERQYCELSAGLSRKCTAASAL 29 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~ 29 (221)
+.+-.|+...+.-+.+++..+..+.+.
T Consensus 27 d~L~kye~~V~~~l~~L~~~l~~isn~ 53 (411)
T 3ghg_C 27 DFLSTYQTKVDKDLQSLEDILHQVENK 53 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchhhHHHHHHHHHHHHHhh
Confidence 456788888888888888888888543
No 97
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=34.39 E-value=40 Score=24.99 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 027611 198 WIMGSIISVLVFAILLILYFKLT 220 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~k~~ 220 (221)
-++.++++++.+.+++++|.+.+
T Consensus 102 ~V~ggv~~~i~~s~~~f~~~r~~ 124 (169)
T 2y69_D 102 TVVGAAMFFIGFTALLLIWEKHY 124 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777776643
No 98
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=34.37 E-value=92 Score=20.98 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 182 SKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 182 a~~li~~m~rr~~~dk~il~~ii~~l~~~i~~vl~~ 217 (221)
..++++.+.+......+...+++++++++++.++|+
T Consensus 8 ~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 43 (114)
T 2q67_A 8 LKRMLRACLRAWKDKEFQVLFVLTILTLISGTIFYS 43 (114)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 445566655554444444444455555555555554
No 99
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=34.25 E-value=98 Score=20.28 Aligned_cols=12 Identities=17% Similarity=0.022 Sum_probs=5.3
Q ss_pred hHHHHHHHHHHH
Q 027611 4 VFEGYERQYCEL 15 (221)
Q Consensus 4 ~f~~ye~e~~~~ 15 (221)
.|.+|-+-.+.+
T Consensus 17 RlAsyIdKVR~L 28 (93)
T 3s4r_A 17 RFANLIDKVRFL 28 (93)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 100
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=33.97 E-value=89 Score=19.69 Aligned_cols=27 Identities=11% Similarity=-0.164 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 192 RMSRDKWIMGSIISVLVFAILLILYFK 218 (221)
Q Consensus 192 r~~~dk~il~~ii~~l~~~i~~vl~~k 218 (221)
..+..-.-..++.++++.+|+|+++.-
T Consensus 32 ~EF~~iak~~~iG~~imG~IGfiIkli 58 (74)
T 1rh5_B 32 DEYLAVAKVTALGISLLGIIGYIIHVP 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445556666666677776553
No 101
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=33.18 E-value=1.1e+02 Score=20.57 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=29.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHhhcc
Q 027611 38 LSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLES 107 (221)
Q Consensus 38 ~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~ 107 (221)
+.-++..+++.++.+.++..|.+... ..+...+..+..++.++..++... .+|++|+..
T Consensus 32 VdlLKD~LEe~eE~~aql~Re~~eK~--------re~e~~Kr~~~~L~~~~~~lk~~L---~qRD~LI~E 90 (103)
T 4h22_A 32 VDTLKDMLLELEEQLAESRRQYEEKN--------KEFEREKHAHSILQFQFAEVKEAL---KQREEMLEP 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH---HTTTSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 44456667777777777777665421 123333344444444444443332 256777654
No 102
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=32.99 E-value=46 Score=17.99 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 027611 195 RDKWIMGSIISVLVFA 210 (221)
Q Consensus 195 ~dk~il~~ii~~l~~~ 210 (221)
+=|+..|.++++.+.+
T Consensus 3 tLKi~Vy~vV~ffvsL 18 (38)
T 3arc_I 3 TLKITVYIVVTFFVLL 18 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eEEeeehhHHHHHHHH
Confidence 4466777666554433
No 103
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=32.95 E-value=1.1e+02 Score=20.28 Aligned_cols=41 Identities=32% Similarity=0.434 Sum_probs=17.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH----HHhcCChhHHHHHHHHHHH
Q 027611 36 QKLSEIKTGLDDADALIRKMDL----EARSLQPNVKAMLLSKLRE 76 (221)
Q Consensus 36 ~~~~~~~~~l~ea~~~l~~m~~----E~~~~~~~~r~~~~~k~~~ 76 (221)
..+++++....++...+.+.-. ...+++++.+.....++++
T Consensus 25 ~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~l~~I~~ 69 (104)
T 4afl_A 25 QLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLALLKQIQE 69 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhHHHHHHHHH
Confidence 3455555554444444433222 2234555555444344433
No 104
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=32.45 E-value=97 Score=19.85 Aligned_cols=27 Identities=11% Similarity=-0.193 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 192 RMSRDKWIMGSIISVLVFAILLILYFK 218 (221)
Q Consensus 192 r~~~dk~il~~ii~~l~~~i~~vl~~k 218 (221)
..+..-+-..++-++++.+|+|++++-
T Consensus 45 ~Ef~~iak~t~iG~~imG~IGfiIkLI 71 (80)
T 2ww9_B 45 KEYTKIVKAVGIGFIAVGIIGYAIKLI 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555566666667777776543
No 105
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=32.32 E-value=86 Score=19.00 Aligned_cols=48 Identities=10% Similarity=-0.015 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHHHHHH
Q 027611 137 IKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKK 184 (221)
Q Consensus 137 L~~s~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~~a~~ 184 (221)
|...+..+.++..+.....+.+.+--|.|....++..++...-..=.+
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~ 53 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSK 53 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677888888888888888888888898888888776655544333
No 106
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=32.31 E-value=95 Score=19.52 Aligned_cols=55 Identities=15% Similarity=0.209 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC----hhHHHHHHHHHHHHHHHHHHH
Q 027611 30 DGELKKQKLSEIKTGLDDADALIRKMDLEARSLQ----PNVKAMLLSKLREYKTDLNNL 84 (221)
Q Consensus 30 ~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~----~~~r~~~~~k~~~~~~~l~~l 84 (221)
+|++-......+...-.+++..+..|...+..+. ......|.....+.+..+..+
T Consensus 10 ~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~ 68 (93)
T 4ioe_A 10 TPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQY 68 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHH
Confidence 4555566666777777777777777777777653 444455555443333333333
No 107
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=31.28 E-value=1.2e+02 Score=20.57 Aligned_cols=53 Identities=11% Similarity=0.221 Sum_probs=30.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCh--hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 38 LSEIKTGLDDADALIRKMDLEARSLQP--NVKAMLLSKLREYKTDLNNLKNEVKR 90 (221)
Q Consensus 38 ~~~~~~~l~ea~~~l~~m~~E~~~~~~--~~r~~~~~k~~~~~~~l~~l~~~~~~ 90 (221)
+..+...|..|++.+..+..++..+.. ..+.+-..++.-++....-|+.+|..
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~a 80 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQA 80 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 555666666666666666666554432 11333345666666677777777754
No 108
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=30.47 E-value=2.2e+02 Score=23.25 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=33.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 38 LSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 38 ~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
+...-..++++.+.++.++.++..-|. .....++..+++++-.+++.+...
T Consensus 190 vd~y~~~l~~l~~~id~lE~~v~~~~~---~~~l~~l~~lrr~l~~lrr~l~p~ 240 (363)
T 2iub_A 190 VDDYFVLLEKIDDEIDVLEEEVLERPE---KETVQRTHQLKRNLVELRKTIWPL 240 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677777777777777765443 234567777777777777776553
No 109
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=30.07 E-value=40 Score=20.84 Aligned_cols=8 Identities=38% Similarity=0.264 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 027611 209 FAILLILY 216 (221)
Q Consensus 209 ~~i~~vl~ 216 (221)
++|++++.
T Consensus 31 ~GI~iilS 38 (67)
T 2jp3_A 31 AGIALALS 38 (67)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 33433443
No 110
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=29.93 E-value=1.7e+02 Score=21.59 Aligned_cols=58 Identities=9% Similarity=0.219 Sum_probs=27.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHH----HHHHHhhcc
Q 027611 36 QKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLK----NEVKRVTSG 94 (221)
Q Consensus 36 ~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~----~~~~~~~~~ 94 (221)
..+.+++..+..+..-++.+..-...+ ...+..+..++....++...+. =+++.++..
T Consensus 90 e~~~elq~ri~~L~~El~~~k~~~~k~-~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~ 151 (168)
T 3o0z_A 90 EMIGDLQARITSLQEEVKHLKHNLEKV-EGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQR 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344445555554444444433211111 2234456667766666666655 334544433
No 111
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=29.12 E-value=60 Score=16.21 Aligned_cols=19 Identities=21% Similarity=0.287 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027611 198 WIMGSIISVLVFAILLILY 216 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~ 216 (221)
+|..++.++-+++++|.+|
T Consensus 8 viaglvalltflafgfwlf 26 (32)
T 2lx0_A 8 VIAGLVALLTFLAFGFWLF 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666554
No 112
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=29.00 E-value=1.7e+02 Score=21.81 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027611 5 FEGYERQYCELSAGLSR 21 (221)
Q Consensus 5 f~~ye~e~~~~~~~i~~ 21 (221)
|-+|-..+.....++..
T Consensus 33 ~~~y~~~l~~~a~~~~e 49 (191)
T 1nfn_A 33 FWDYLRWVQTLSEQVQE 49 (191)
T ss_dssp HHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444333333
No 113
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=28.58 E-value=1.2e+02 Score=19.70 Aligned_cols=57 Identities=11% Similarity=0.156 Sum_probs=27.5
Q ss_pred HHHHhhHHHHHHHHHHHHHH--HhcCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 027611 39 SEIKTGLDDADALIRKMDLE--ARSLQP----NVKAMLLSKLREYKTDLNNLKNEVKRVTSGN 95 (221)
Q Consensus 39 ~~~~~~l~ea~~~l~~m~~E--~~~~~~----~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~~ 95 (221)
..++..|.+++..+..+... +..-.. .....|....++.+.-|..+...+......+
T Consensus 28 ~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~~a~~~y 90 (103)
T 4i0x_B 28 EFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAARTAHGAY 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555554 433111 1123455555555555555555555544443
No 114
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=28.50 E-value=1.1e+02 Score=19.58 Aligned_cols=53 Identities=9% Similarity=0.095 Sum_probs=22.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhcCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 39 SEIKTGLDDADALIRKMDLEARSLQ----PNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 39 ~~~~~~l~ea~~~l~~m~~E~~~~~----~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
.++.....+++..+..|+..+..+. ......|.....+......++...+..+
T Consensus 16 ~~i~~~~~~i~~~l~~l~~~v~~L~~~W~G~A~~ay~~~~~~W~~~~~~l~~~L~~i 72 (96)
T 3h6p_C 16 GDMAGYAGTLQSLGADIASEQAVLSSAWQGDTGITYQGWQTQWNQALEDLVRAYQSM 72 (96)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHTGGGCCTTSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555432 2222234444444444444444444443
No 115
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=28.05 E-value=2.2e+02 Score=22.28 Aligned_cols=31 Identities=6% Similarity=-0.096 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC
Q 027611 33 LKKQKLSEIKTGLDDADALIRKMDLEARSLQ 63 (221)
Q Consensus 33 ~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~ 63 (221)
.....+.+++..|.++.+.+..+..++...|
T Consensus 68 ~~~~~~~eA~~~l~~i~~~~~~L~~~l~~~~ 98 (249)
T 3axj_A 68 QISAACGLARKQVELCAQKYQKLAELVPAGQ 98 (249)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 3667899999999999999999988877655
No 116
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=27.87 E-value=1.3e+02 Score=19.86 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=38.1
Q ss_pred HHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 17 AGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 17 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
+.|..++..+.. ..+.-......++..+..++....+.+.|+.+ +..|++....+++.+...+..+
T Consensus 5 daIKkKm~~lk~-e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~s--------L~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 5 DAIKKKMQMLKL-DKENALDRAEQAEADKKAAEERSKQLEDDIVQ--------LEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 445556655532 22333445666777777777777777777765 4455555555555555555443
No 117
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=27.85 E-value=1.6e+02 Score=20.62 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=34.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 36 QKLSEIKTGLDDADALIRKMDLEARSLQ-------PNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 36 ~~~~~~~~~l~ea~~~l~~m~~E~~~~~-------~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
..-.+++..+..++.++.......+..+ ...+.++..-+.....+|++|.+.+.-.
T Consensus 31 ~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~iv 93 (130)
T 4dnd_A 31 VVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIV 93 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888877665443322 1234566777777777777777777654
No 118
>1skv_A ORF D-63, hypothetical 7.5 kDa protein; sulfolobus spindle virus, SSV, archaeal, crenarchaeal, helix-turn-helix, four helix bundle; 2.60A {Sulfolobus virus 1} SCOP: a.30.5.1
Probab=27.01 E-value=1.1e+02 Score=18.71 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHH-Hhhhh
Q 027611 3 QVFEGYERQYCELSAGLSR-KCTAA 26 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~-~l~~~ 26 (221)
++|.+.+++++.++.-+-. +++-+
T Consensus 9 elF~eLD~diReLLSlvheIKID~I 33 (69)
T 1skv_A 9 ELFEMLDEDVRELLSLIHEIKIDRI 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHheeee
Confidence 6899999999998887776 44444
No 119
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=26.78 E-value=3.2e+02 Score=23.84 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=7.9
Q ss_pred HhHHHhhcchhhhhh
Q 027611 163 QSLLHAHNTLHGVDD 177 (221)
Q Consensus 163 e~l~~~~~~~~~i~~ 177 (221)
=+|..+.+.+.+++-
T Consensus 256 yKLkkvI~aLtGidl 270 (526)
T 3iyk_A 256 YKLKKVINALSGIDL 270 (526)
T ss_pred HHHHHHHHHHhCCCc
Confidence 345555555555543
No 120
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=26.53 E-value=1e+02 Score=22.49 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHhhcchhhhhhhHH
Q 027611 141 RRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNIS 180 (221)
Q Consensus 141 ~~~~~ete~~g~~i~~~L~~Qre~l~~~~~~~~~i~~~l~ 180 (221)
-.+++....+|.+++.-|..|.+++.++...+..+...+.
T Consensus 60 aSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~ 99 (159)
T 3p8c_F 60 ASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVD 99 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999999999999998887766643
No 121
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=26.32 E-value=1.8e+02 Score=22.05 Aligned_cols=46 Identities=11% Similarity=0.216 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 027611 49 DALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGN 95 (221)
Q Consensus 49 ~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~~ 95 (221)
-+.+.+++.+..++-++ -+.+.......+.++++++..++++....
T Consensus 29 ~~~~~~~~a~~~s~~s~-~~dl~~s~~~l~ae~~~L~~~l~kLeGn~ 74 (206)
T 3oa7_A 29 TEALQQLRVNYGSFVSE-YNDLTKSHNTLSKELDNLRSRFGNLEGNT 74 (206)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHccCCH
Confidence 34455555555544333 23566677778899999999999987664
No 122
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=26.21 E-value=39 Score=22.07 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027611 198 WIMGSIISVLVFAILLILYFKL 219 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~k~ 219 (221)
.++++.++++++.+++-+|-||
T Consensus 63 ~VLv~sl~FIa~VilLHI~gK~ 84 (87)
T 2ww9_C 63 VVLFLSVGFIFSVIALHLLTKF 84 (87)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred eehhhHHHHHHHHHHHHHhhhh
Confidence 4444444445555555566555
No 123
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.14 E-value=1.4e+02 Score=19.31 Aligned_cols=48 Identities=10% Similarity=-0.051 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHH
Q 027611 9 ERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMD 56 (221)
Q Consensus 9 e~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~ 56 (221)
...++..+..+...+-.++....-.+-..+..+-..|..++.....+.
T Consensus 18 R~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~ 65 (88)
T 1nkp_A 18 RNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLI 65 (88)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554333221222344444444444444444433333
No 124
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=25.81 E-value=1.3e+02 Score=19.17 Aligned_cols=58 Identities=14% Similarity=0.003 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 33 LKKQKLSEIKTGLDDADALIRKMDLEARSLQ----PNVKAMLLSKLREYKTDLNNLKNEVKR 90 (221)
Q Consensus 33 ~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~----~~~r~~~~~k~~~~~~~l~~l~~~~~~ 90 (221)
+-......+...-.++...+..|+..+..+. ......|.....+.+....++...+..
T Consensus 4 el~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~Aa~af~~~~~~w~~~a~~l~~~L~~ 65 (94)
T 4i0x_A 4 EVGALSKFAASLADQMRAGSNSLDRDVQSLFGVWKGSAADAYRSGWDEMQDGATKVWNALTD 65 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666777777777776654 233344544444444444444444443
No 125
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.71 E-value=1.2e+02 Score=18.74 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=7.9
Q ss_pred HHHHHHHhhHHHHHHHHH
Q 027611 36 QKLSEIKTGLDDADALIR 53 (221)
Q Consensus 36 ~~~~~~~~~l~ea~~~l~ 53 (221)
..+.+++..+.+++....
T Consensus 29 ~~i~~LE~~v~~le~~~~ 46 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHS 46 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 126
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=25.69 E-value=2.4e+02 Score=22.25 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027611 45 LDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVT 92 (221)
Q Consensus 45 l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~ 92 (221)
...+....+.+...+..+.|..+..|....+.|.++++.+..+++...
T Consensus 109 p~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~ld~~~~~~l 156 (282)
T 3mfq_A 109 IPLYKSAVAVASEELQKLLPAKAEMIQKNTEKYQAQLDDLHAWVEKEL 156 (282)
T ss_dssp HHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666677777778888889999999999999999999998654
No 127
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=25.57 E-value=90 Score=17.06 Aligned_cols=6 Identities=33% Similarity=0.251 Sum_probs=2.3
Q ss_pred HHHHHH
Q 027611 209 FAILLI 214 (221)
Q Consensus 209 ~~i~~v 214 (221)
+++.++
T Consensus 23 i~~ali 28 (39)
T 3arc_X 23 TFAVLI 28 (39)
T ss_dssp HHHHHH
T ss_pred HHHHhe
Confidence 333333
No 128
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=25.45 E-value=1.5e+02 Score=19.63 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 027611 72 SKLREYKTDLNNLKNEVKRVT 92 (221)
Q Consensus 72 ~k~~~~~~~l~~l~~~~~~~~ 92 (221)
.-+..|+..+.++++.+....
T Consensus 52 ~~V~~lq~Ki~elkr~lAd~v 72 (96)
T 2ic9_A 52 AAVSALETKLGELKRELADLI 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334666667777777776654
No 129
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=25.02 E-value=1.3e+02 Score=18.89 Aligned_cols=64 Identities=16% Similarity=0.236 Sum_probs=34.4
Q ss_pred HHHHhhhhhhcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 19 LSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 19 i~~~l~~~~~~~~~~~~~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
|..++..+.. ..+.-...+..++..+.+++......+-|+.+ +..|++....+++.+...+..+
T Consensus 4 ikkKm~~lk~-e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~--------L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 4 IKKKMQMLKL-DKENALDRAEQAEADKKAAEERSKQLEDELVA--------LQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444432 12223344555666666666666666666553 5556666666666665555544
No 130
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=24.58 E-value=2.1e+02 Score=22.49 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027611 45 LDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (221)
Q Consensus 45 l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~ 94 (221)
...+......+...+..+.|..+..|....+.|..+|+.+..+++.....
T Consensus 122 p~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~ 171 (284)
T 2prs_A 122 PEIARATAVAIHGKLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAP 171 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455555566666666678888899999999999999999999876543
No 131
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=24.48 E-value=2.1e+02 Score=22.65 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027611 45 LDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (221)
Q Consensus 45 l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~ 94 (221)
...+......+...+..+.|..+..|....+.|..+|+.|..+++.....
T Consensus 138 p~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~ 187 (291)
T 1pq4_A 138 PTLVKRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELGQILQP 187 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55566666666666666778888899999999999999999999876544
No 132
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=24.45 E-value=2.1e+02 Score=22.54 Aligned_cols=50 Identities=6% Similarity=0.053 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027611 45 LDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (221)
Q Consensus 45 l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~ 94 (221)
...+....+.+...+..+.|..+..|....+.|..+|+.+..+++.....
T Consensus 125 p~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~ 174 (284)
T 3cx3_A 125 PEKAGEEAQIIADKLSEVDSEHKETYQKNAQAFIKKAQELTKKFQPKFEK 174 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555555555566678888899999999999999999998876544
No 133
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=24.25 E-value=2.1e+02 Score=22.97 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027611 45 LDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (221)
Q Consensus 45 l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~ 94 (221)
...+....+.+...+..+.|..+..|....+.|..+|+.+..+++.....
T Consensus 138 p~n~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~Ld~~~~~~l~~ 187 (312)
T 2o1e_A 138 PVLAQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDKLYRTTAKK 187 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455555666666666778888899999999999999999999876544
No 134
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=24.13 E-value=2.2e+02 Score=22.52 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027611 45 LDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (221)
Q Consensus 45 l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~ 94 (221)
...+....+.+...+..+.|..+..|....+.|..+|+.+..+++.....
T Consensus 127 p~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~ 176 (286)
T 3gi1_A 127 PVLAGEEAVNIAKELGRLDPKHKDSYTKNAKAFKKEAEQLTEEYTQKFKK 176 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555556666666678888899999999999999999999876544
No 135
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=24.06 E-value=92 Score=16.68 Aligned_cols=16 Identities=25% Similarity=0.565 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 027611 203 IISVLVFAILLILYFK 218 (221)
Q Consensus 203 ii~~l~~~i~~vl~~k 218 (221)
.++++=.++.+++|.+
T Consensus 13 Lfi~iPt~FLlilYvq 28 (36)
T 3arc_M 13 LFVLVPSVFLIILYVQ 28 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhe
Confidence 3333334455566654
No 136
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=24.01 E-value=2.3e+02 Score=21.25 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=12.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHh
Q 027611 36 QKLSEIKTGLDDADALIRKMDLEAR 60 (221)
Q Consensus 36 ~~~~~~~~~l~ea~~~l~~m~~E~~ 60 (221)
.+-.+++..|..++.-+..+...+.
T Consensus 42 ELE~ELE~eL~~~Ek~~~~L~~~~~ 66 (189)
T 2v71_A 42 ELEAELEAQLVQAEQRNRDLQADNQ 66 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544444333
No 137
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.84 E-value=1.4e+02 Score=18.68 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027611 70 LLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 70 ~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
+..++.++..++..|+.++.+.
T Consensus 45 LEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 45 LELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555544
No 138
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=23.74 E-value=1.5e+02 Score=19.02 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=31.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcCC----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 35 KQKLSEIKTGLDDADALIRKMDLEARSLQ----PNVKAMLLSKLREYKTDLNNLKNEVKR 90 (221)
Q Consensus 35 ~~~~~~~~~~l~ea~~~l~~m~~E~~~~~----~~~r~~~~~k~~~~~~~l~~l~~~~~~ 90 (221)
......+...-.+++..+..|+.++..+. ......|.....+.......+..-+..
T Consensus 13 ~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~ 72 (101)
T 3fav_A 13 AQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDE 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777778888887776654 333344444444444444444444433
No 139
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=23.67 E-value=1.6e+02 Score=19.28 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=31.3
Q ss_pred HHhhHHHHHHHHHHHHHHHhcCChhHHHH--HHHHHHHHHHHHHHHHHHHHH-hh
Q 027611 41 IKTGLDDADALIRKMDLEARSLQPNVKAM--LLSKLREYKTDLNNLKNEVKR-VT 92 (221)
Q Consensus 41 ~~~~l~ea~~~l~~m~~E~~~~~~~~r~~--~~~k~~~~~~~l~~l~~~~~~-~~ 92 (221)
=...+.+++..+...+.-+..+.-..++. =-..-..|...+..|+.++.+ ++
T Consensus 32 Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk 86 (97)
T 3onj_A 32 RNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIK 86 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777666666666544433 112235667777777777776 54
No 140
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.42 E-value=1.6e+02 Score=25.05 Aligned_cols=19 Identities=0% Similarity=0.022 Sum_probs=8.6
Q ss_pred HHhhHHHHHHHHHHHHHHH
Q 027611 41 IKTGLDDADALIRKMDLEA 59 (221)
Q Consensus 41 ~~~~l~ea~~~l~~m~~E~ 59 (221)
+...++..++...+++.|-
T Consensus 412 ~~~~~~~~~~~~~~~~~~~ 430 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQ 430 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444
No 141
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=23.36 E-value=2.1e+02 Score=23.01 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027611 45 LDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (221)
Q Consensus 45 l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~ 94 (221)
...+....+.+...+..+.|..+..|....+.|..+++.+..+++.....
T Consensus 143 p~n~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~Ld~~~~~~l~~ 192 (313)
T 1toa_A 143 VKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAYVRRKAQS 192 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555566678888899999999999999999998876543
No 142
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=23.08 E-value=1.5e+02 Score=18.63 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=21.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027611 40 EIKTGLDDADALIRKMDLEARSLQP----NVKAMLLSKLREYKTDLNNLKNEVKRV 91 (221)
Q Consensus 40 ~~~~~l~ea~~~l~~m~~E~~~~~~----~~r~~~~~k~~~~~~~l~~l~~~~~~~ 91 (221)
.++..+.++...+..|...+..-.. ..-..|...+..+..-|..+...+...
T Consensus 24 ~l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~ 79 (97)
T 2vs0_A 24 QIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNST 79 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433221 111234444444444444444444443
No 143
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=22.84 E-value=2.3e+02 Score=22.55 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 027611 45 LDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSG 94 (221)
Q Consensus 45 l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~ 94 (221)
...+....+.+...+..+.|..+..|....+.|..+|+.+..+++.....
T Consensus 129 p~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~ 178 (294)
T 3hh8_A 129 LENGIIYSKNIAKQLIAKDPKNKETYEKNLKAYVAKLEKLDKEAKSKFDA 178 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555566678878899999999999999999999875433
No 144
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=22.34 E-value=5.3e+02 Score=24.83 Aligned_cols=87 Identities=14% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcchHHHH--HHHHHHHhhHHHHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHH
Q 027611 6 EGYERQYCELSAGLSRKCTAASALDGELKK--QKLSEIKTGLDDADALIRKMDLEARSLQ---PNVKAMLLSKLREYKTD 80 (221)
Q Consensus 6 ~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~--~~~~~~~~~l~ea~~~l~~m~~E~~~~~---~~~r~~~~~k~~~~~~~ 80 (221)
..+++....-+.+++..+..+.....+-.. ..+.+++..+.+.+..+.....|...+. ...+..+..++...+++
T Consensus 952 ~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e 1031 (1080)
T 2dfs_A 952 NNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQ 1031 (1080)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhh
Q 027611 81 LNNLKNEVKRVT 92 (221)
Q Consensus 81 l~~l~~~~~~~~ 92 (221)
...|+++...+.
T Consensus 1032 ~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1032 NTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 145
>1svf_B Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=22.20 E-value=43 Score=18.16 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=7.0
Q ss_pred hcchhhhhhhHHHHHHHH
Q 027611 169 HNTLHGVDDNISKSKKIL 186 (221)
Q Consensus 169 ~~~~~~i~~~l~~a~~li 186 (221)
...+.+...-+..|+.++
T Consensus 18 n~sl~~A~~~l~~Sn~~L 35 (38)
T 1svf_B 18 NKSLSDALQHLAQSDTYL 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333344444333
No 146
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=21.97 E-value=1.9e+02 Score=19.47 Aligned_cols=25 Identities=12% Similarity=0.306 Sum_probs=16.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHh
Q 027611 36 QKLSEIKTGLDDADALIRKMDLEAR 60 (221)
Q Consensus 36 ~~~~~~~~~l~ea~~~l~~m~~E~~ 60 (221)
....++......++..|+.|+.+..
T Consensus 54 ~l~~~i~~~a~~ik~~Lk~l~~~~~ 78 (127)
T 1ez3_A 54 ELMSDIKKTANKVRSKLKSIEQSIE 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777776554
No 147
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=21.81 E-value=2.4e+02 Score=22.62 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027611 46 DDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTS 93 (221)
Q Consensus 46 ~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~ 93 (221)
..+....+.+...+..+.|..+..|....+.|..+|+.+..+++....
T Consensus 137 ~n~~~~a~~I~~~L~~~DP~~a~~Y~~Na~~~~~~L~~Ld~~~~~~l~ 184 (307)
T 3ujp_A 137 RNALVYVENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLE 184 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555556667888889999999999999999999987543
No 148
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=21.54 E-value=1.9e+02 Score=19.40 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=29.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 38 LSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKR 90 (221)
Q Consensus 38 ~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~ 90 (221)
+.+++.++..|--...|++.|-.++.-.. ..++.++....+.+..++++++.
T Consensus 4 L~EvEEKyrKAMVsnAQLDNEKsal~YqV-dlLKD~LEe~eE~~aql~Re~~e 55 (103)
T 4h22_A 4 LAEVEEKYKKAMVSNAQLDNEKTNFMYQV-DTLKDMLLELEEQLAESRRQYEE 55 (103)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888887766544322 24555555555555555555544
No 149
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=21.54 E-value=2.5e+02 Score=22.62 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027611 46 DDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTS 93 (221)
Q Consensus 46 ~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~ 93 (221)
..+....+.+...+..+.|..+..|....+.|..+++.+..+++....
T Consensus 151 ~n~~~~a~~I~~~L~~~DP~~a~~Y~~Na~~~~~~L~~Ld~~~~~~l~ 198 (321)
T 1xvl_A 151 RNALVYVENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLE 198 (321)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555567888889999999999999999999987543
No 150
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=21.51 E-value=2.4e+02 Score=22.77 Aligned_cols=46 Identities=11% Similarity=0.113 Sum_probs=24.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 027611 36 QKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDL 81 (221)
Q Consensus 36 ~~~~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l 81 (221)
.+-.++...++++..-+.-+-.|+...-...-..|+.++..|-.+|
T Consensus 107 ~Lr~~L~~dlEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~~EL 152 (307)
T 2l7b_A 107 AAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKL 152 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666777777777777777665422211224455554444444
No 151
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=21.16 E-value=1.4e+02 Score=18.00 Aligned_cols=20 Identities=10% Similarity=0.062 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027611 198 WIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 198 ~il~~ii~~l~~~i~~vl~~ 217 (221)
+-..++.++++.+|+++++.
T Consensus 34 ak~~~iG~~i~G~iGf~Ikl 53 (61)
T 3mp7_B 34 AKITGLGIILIGLIGMLIRI 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666654
No 152
>2w1k_A Putative sortase; pilus, pneumococcus, pathogenicity, transferase; HET: MES; 2.14A {Streptococcus pneumoniae}
Probab=20.72 E-value=21 Score=28.30 Aligned_cols=22 Identities=18% Similarity=0.670 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027611 196 DKWIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 196 dk~il~~ii~~l~~~i~~vl~~ 217 (221)
..+++.+++++++++|++++|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~ 244 (252)
T 2w1k_A 223 SQWLYRGLVVLAFLGILFVLWK 244 (252)
T ss_dssp ----------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3355656666666666665554
No 153
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=20.71 E-value=1.7e+02 Score=18.51 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 027611 5 FEGYERQYCELSAGLSRKCTAA 26 (221)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~ 26 (221)
|...-.++...+..+...+..+
T Consensus 20 ~~~~~~~i~~~l~~L~~~~~~l 41 (98)
T 3gwk_C 20 YTAGSQQVTEVLNLLTQEQAVI 41 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 154
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=20.66 E-value=3.4e+02 Score=21.88 Aligned_cols=49 Identities=6% Similarity=0.039 Sum_probs=28.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027611 39 SEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKR 90 (221)
Q Consensus 39 ~~~~~~l~ea~~~l~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~ 90 (221)
......++++++.++.++.++..-+. .....++...++++-.+++.+..
T Consensus 167 d~~~~~l~~l~~~i~~lE~~l~~~~~---~~~l~~l~~lrr~l~~lrr~l~~ 215 (339)
T 4ev6_A 167 RSYSRILMNLEDELEELEDKLLAGYD---REVMEKILGLRKTLVYFHKSLIA 215 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTCCC---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh---hhHHHHHHHHHHHHHHHHHHhhh
Confidence 34444555666666666665543332 24456777777777777766654
No 155
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=20.30 E-value=1.5e+02 Score=18.93 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027611 196 DKWIMGSIISVLVFAILLILYF 217 (221)
Q Consensus 196 dk~il~~ii~~l~~~i~~vl~~ 217 (221)
|+++..+.+++++++++..+|.
T Consensus 49 d~~Ly~~t~~l~~~G~~~~ly~ 70 (80)
T 2y69_J 49 DNILYRVTMTLCLGGTLYSLYC 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHHHHHHHHHHH
Confidence 4444456666777777666665
No 156
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=20.29 E-value=1.6e+02 Score=17.90 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=31.1
Q ss_pred hHHHHHH-HHHHHHHHHHHHhhhhhhcchH--HHHHHHHHHHhhHHH
Q 027611 4 VFEGYER-QYCELSAGLSRKCTAASALDGE--LKKQKLSEIKTGLDD 47 (221)
Q Consensus 4 ~f~~ye~-e~~~~~~~i~~~l~~~~~~~~~--~~~~~~~~~~~~l~e 47 (221)
+..+|.. =|.....++.+.|..++..++. -+..+++.+...+.+
T Consensus 15 ~~~~yrs~Gf~eC~~EV~rfLs~~eg~d~~d~~r~rLl~HL~~~~~~ 61 (64)
T 2db7_A 15 LAMDYRSLGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQ 61 (64)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhc
Confidence 4567884 8888999999999998876654 566666665555443
Done!