Query 027612
Match_columns 221
No_of_seqs 153 out of 1006
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 12:33:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0859 Synaptobrevin/VAMP-lik 100.0 1.5E-67 3.3E-72 403.1 17.8 215 4-220 1-216 (217)
2 KOG0862 Synaptobrevin/VAMP-lik 100.0 4.7E-35 1E-39 228.9 20.5 194 5-200 1-205 (216)
3 KOG0861 SNARE protein YKT6, sy 100.0 1.2E-31 2.6E-36 201.8 13.6 152 29-185 41-193 (198)
4 PF00957 Synaptobrevin: Synapt 100.0 1.7E-28 3.7E-33 171.9 10.4 88 128-215 2-89 (89)
5 KOG0860 Synaptobrevin/VAMP-lik 100.0 4.6E-28 9.9E-33 172.0 10.5 86 128-213 28-113 (116)
6 COG5143 SNC1 Synaptobrevin/VAM 99.9 3E-23 6.4E-28 160.4 13.5 180 6-190 3-190 (190)
7 PF13774 Longin: Regulated-SNA 99.8 4.6E-19 1E-23 122.4 11.3 81 31-112 1-82 (83)
8 COG5143 SNC1 Synaptobrevin/VAM 97.9 5.1E-05 1.1E-09 59.4 7.5 76 130-205 95-170 (190)
9 PF03908 Sec20: Sec20; InterP 96.6 0.047 1E-06 38.0 10.0 75 133-210 5-89 (92)
10 PF00957 Synaptobrevin: Synapt 96.5 0.077 1.7E-06 36.6 10.3 78 129-210 10-87 (89)
11 KOG0811 SNARE protein PEP12/VA 96.4 0.021 4.6E-07 47.6 8.3 46 129-174 180-225 (269)
12 COG5074 t-SNARE complex subuni 95.8 0.057 1.2E-06 43.7 7.6 77 130-206 186-265 (280)
13 KOG0810 SNARE protein Syntaxin 95.5 0.1 2.2E-06 44.3 8.5 73 129-203 206-281 (297)
14 PF03908 Sec20: Sec20; InterP 94.5 0.77 1.7E-05 31.9 9.5 34 131-164 10-43 (92)
15 PF04086 SRP-alpha_N: Signal r 93.5 0.14 3E-06 43.0 5.0 65 28-94 4-70 (279)
16 KOG0860 Synaptobrevin/VAMP-lik 91.5 3.1 6.8E-05 30.1 8.9 57 148-210 58-114 (116)
17 KOG0781 Signal recognition par 91.2 0.6 1.3E-05 42.1 6.1 86 7-94 4-95 (587)
18 PF09753 Use1: Membrane fusion 91.1 1.7 3.6E-05 36.0 8.5 17 192-208 228-244 (251)
19 PF10779 XhlA: Haemolysin XhlA 91.1 2.9 6.4E-05 27.5 8.0 51 156-209 19-69 (71)
20 PF04099 Sybindin: Sybindin-li 89.8 5.4 0.00012 30.0 9.6 84 33-118 46-140 (142)
21 PF09426 Nyv1_N: Vacuolar R-SN 85.8 1.4 3E-05 32.6 3.9 60 28-87 42-110 (141)
22 PTZ00478 Sec superfamily; Prov 84.3 3.9 8.4E-05 27.7 5.3 58 152-209 9-66 (81)
23 KOG3385 V-SNARE [Intracellular 83.8 2.8 6.2E-05 30.3 4.7 77 129-210 36-116 (118)
24 COG5074 t-SNARE complex subuni 83.5 4.4 9.6E-05 33.0 6.2 34 180-214 243-276 (280)
25 PF01217 Clat_adaptor_s: Clath 83.4 16 0.00035 27.1 13.0 88 5-94 1-96 (141)
26 PRK09400 secE preprotein trans 83.4 5.1 0.00011 25.6 5.3 51 160-210 4-54 (61)
27 PF05478 Prominin: Prominin; 83.2 12 0.00027 36.4 10.3 10 206-215 429-438 (806)
28 KOG1983 Tomosyn and related SN 82.0 1 2.2E-05 44.6 2.6 45 144-188 942-986 (993)
29 KOG1666 V-SNARE [Intracellular 80.4 29 0.00063 28.0 9.8 43 167-209 170-215 (220)
30 KOG3202 SNARE protein TLG1/Syn 79.4 17 0.00038 29.8 8.4 32 154-185 177-208 (235)
31 PF07204 Orthoreo_P10: Orthore 78.5 1.2 2.7E-05 30.8 1.3 25 190-214 39-63 (98)
32 PRK01026 tetrahydromethanopter 78.1 17 0.00036 24.3 6.5 29 157-187 22-50 (77)
33 COG5325 t-SNARE complex subuni 77.9 18 0.0004 30.3 8.2 44 129-172 195-238 (283)
34 PF06837 Fijivirus_P9-2: Fijiv 77.5 4 8.7E-05 32.0 4.0 39 134-172 21-61 (214)
35 PF06789 UPF0258: Uncharacteri 76.0 1.7 3.8E-05 32.9 1.6 34 178-214 122-155 (159)
36 PF12606 RELT: Tumour necrosis 75.9 1.7 3.7E-05 26.6 1.3 13 208-220 15-32 (50)
37 KOG0938 Adaptor complexes medi 75.8 53 0.0012 28.6 11.3 89 2-94 2-93 (446)
38 PRK10884 SH3 domain-containing 75.5 41 0.00088 27.1 10.6 18 155-172 130-147 (206)
39 TIGR01149 mtrG N5-methyltetrah 73.7 22 0.00048 23.2 6.0 29 157-187 19-47 (70)
40 PF13800 Sigma_reg_N: Sigma fa 73.3 7.7 0.00017 26.9 4.3 12 181-192 6-17 (96)
41 PF04210 MtrG: Tetrahydrometha 72.5 24 0.00052 23.1 7.4 30 156-187 18-47 (70)
42 PF03904 DUF334: Domain of unk 71.7 54 0.0012 26.7 11.1 25 129-156 97-121 (230)
43 PF13800 Sigma_reg_N: Sigma fa 70.7 8 0.00017 26.8 3.9 20 182-201 4-23 (96)
44 PF04799 Fzo_mitofusin: fzo-li 70.1 21 0.00045 27.8 6.4 50 129-178 109-158 (171)
45 TIGR00327 secE_euk_arch protei 67.6 17 0.00037 23.2 4.5 44 167-210 7-50 (61)
46 KOG0810 SNARE protein Syntaxin 64.7 44 0.00094 28.5 7.8 41 172-212 245-287 (297)
47 PF07798 DUF1640: Protein of u 64.7 65 0.0014 25.0 9.8 25 129-153 80-104 (177)
48 PF05739 SNARE: SNARE domain; 64.6 32 0.00069 21.4 6.8 44 129-172 4-47 (63)
49 KOG3894 SNARE protein Syntaxin 64.5 45 0.00098 28.5 7.7 36 129-167 232-270 (316)
50 PF06008 Laminin_I: Laminin Do 64.1 65 0.0014 26.7 8.8 42 129-170 192-233 (264)
51 KOG0812 SNARE protein SED5/Syn 64.1 65 0.0014 27.3 8.5 35 129-163 227-261 (311)
52 cd07912 Tweety_N N-terminal do 64.0 85 0.0018 28.2 9.8 39 108-149 105-143 (418)
53 PF12352 V-SNARE_C: Snare regi 61.7 38 0.00083 21.4 6.6 46 129-174 8-53 (66)
54 KOG1326 Membrane-associated pr 61.5 11 0.00024 37.0 4.1 31 181-211 1059-1089(1105)
55 PF09753 Use1: Membrane fusion 61.2 73 0.0016 26.2 8.5 20 188-207 228-247 (251)
56 PF04510 DUF577: Family of unk 59.0 22 0.00049 27.7 4.7 107 64-191 65-171 (174)
57 KOG2678 Predicted membrane pro 58.2 33 0.00072 27.9 5.6 16 165-180 195-210 (244)
58 KOG3498 Preprotein translocase 57.4 40 0.00087 21.7 4.8 39 159-197 4-42 (67)
59 PF03302 VSP: Giardia variant- 57.1 6.9 0.00015 34.7 1.8 13 204-216 383-395 (397)
60 KOG3208 SNARE protein GS28 [In 56.9 90 0.0019 25.4 7.8 29 183-211 199-229 (231)
61 PF04628 Sedlin_N: Sedlin, N-t 56.0 79 0.0017 23.2 7.2 48 46-93 55-106 (132)
62 PF05659 RPW8: Arabidopsis bro 55.8 39 0.00085 25.6 5.5 48 109-157 31-79 (147)
63 KOG3251 Golgi SNAP receptor co 55.4 1.1E+02 0.0024 24.7 8.1 31 148-178 137-168 (213)
64 PF13124 DUF3963: Protein of u 54.3 30 0.00065 19.5 3.4 16 186-201 17-32 (40)
65 PF11657 Activator-TraM: Trans 54.2 94 0.002 23.5 11.8 42 70-121 21-62 (144)
66 PF01099 Uteroglobin: Uteroglo 53.7 32 0.00068 22.2 4.1 44 112-155 17-60 (67)
67 smart00096 UTG Uteroglobin. 53.5 39 0.00084 22.2 4.4 40 116-155 23-62 (69)
68 PF01601 Corona_S2: Coronaviru 53.2 5.9 0.00013 36.7 0.8 12 109-120 481-492 (610)
69 KOG1690 emp24/gp25L/p24 family 53.1 43 0.00093 26.8 5.4 20 174-193 170-190 (215)
70 KOG2678 Predicted membrane pro 52.9 84 0.0018 25.6 7.1 27 171-197 194-221 (244)
71 PF11337 DUF3139: Protein of u 52.8 19 0.0004 24.4 3.1 6 193-198 5-10 (85)
72 cd00633 Secretoglobin Secretog 52.6 40 0.00087 21.6 4.5 43 112-154 17-59 (67)
73 PF14575 EphA2_TM: Ephrin type 52.4 22 0.00048 23.6 3.3 18 197-214 6-23 (75)
74 PF05478 Prominin: Prominin; 52.0 1.3E+02 0.0029 29.3 9.8 41 175-215 401-441 (806)
75 PF02439 Adeno_E3_CR2: Adenovi 51.3 23 0.00049 20.3 2.7 8 197-204 8-15 (38)
76 PF06072 Herpes_US9: Alphaherp 48.9 44 0.00095 21.2 3.9 8 171-178 9-16 (60)
77 PF12751 Vac7: Vacuolar segreg 48.8 18 0.00039 31.8 3.0 26 184-209 294-319 (387)
78 PF11166 DUF2951: Protein of u 48.2 92 0.002 21.7 8.0 21 131-151 30-50 (98)
79 smart00397 t_SNARE Helical reg 48.2 63 0.0014 19.8 5.2 44 129-172 12-55 (66)
80 KOG0859 Synaptobrevin/VAMP-lik 48.1 42 0.0009 26.8 4.6 52 136-187 125-176 (217)
81 KOG3287 Membrane trafficking p 47.9 1.3E+02 0.0028 24.5 7.4 57 144-200 150-211 (236)
82 PHA03240 envelope glycoprotein 47.7 19 0.00042 29.0 2.8 6 16-21 73-78 (258)
83 COG4327 Predicted membrane pro 47.6 47 0.001 23.1 4.3 33 178-210 4-36 (101)
84 PF09680 Tiny_TM_bacill: Prote 47.0 18 0.00039 18.5 1.6 6 205-210 14-19 (24)
85 TIGR01478 STEVOR variant surfa 46.7 20 0.00044 30.2 2.9 18 195-212 266-283 (295)
86 cd00193 t_SNARE Soluble NSF (N 46.6 64 0.0014 19.4 5.2 44 129-172 6-49 (60)
87 PF08006 DUF1700: Protein of u 45.9 1.4E+02 0.003 23.1 7.6 11 80-90 5-15 (181)
88 PHA03054 IMV membrane protein; 45.3 14 0.0003 24.2 1.3 17 187-203 44-60 (72)
89 PHA02650 hypothetical protein; 44.9 18 0.00038 24.3 1.8 14 187-200 45-58 (81)
90 COG5415 Predicted integral mem 44.9 1E+02 0.0022 24.9 6.4 21 155-175 13-33 (251)
91 PTZ00370 STEVOR; Provisional 44.8 22 0.00049 30.0 2.9 17 196-212 263-279 (296)
92 KOG4782 Predicted membrane pro 44.7 45 0.00097 23.2 3.8 38 167-204 28-69 (108)
93 PRK13664 hypothetical protein; 44.3 44 0.00096 21.0 3.4 16 187-202 2-17 (62)
94 PF03164 Mon1: Trafficking pro 44.0 1.1E+02 0.0024 27.3 7.4 52 43-94 53-104 (415)
95 PRK11546 zraP zinc resistance 44.0 70 0.0015 24.2 5.1 17 129-145 89-105 (143)
96 PHA02844 putative transmembran 43.9 20 0.00044 23.7 2.0 11 194-204 51-61 (75)
97 PF05393 Hum_adeno_E3A: Human 43.7 14 0.0003 25.4 1.2 10 205-214 45-54 (94)
98 PF02038 ATP1G1_PLM_MAT8: ATP1 41.9 60 0.0013 19.8 3.6 15 189-203 11-25 (50)
99 PRK10884 SH3 domain-containing 41.8 1.8E+02 0.004 23.3 9.6 8 165-172 147-154 (206)
100 KOG0809 SNARE protein TLG2/Syn 41.8 62 0.0013 27.5 5.0 35 129-163 218-252 (305)
101 PF00558 Vpu: Vpu protein; In 41.7 31 0.00068 23.4 2.7 21 194-214 6-26 (81)
102 PF12575 DUF3753: Protein of u 41.0 16 0.00034 24.2 1.1 6 139-144 25-30 (72)
103 PF07296 TraP: TraP protein; 40.4 1.2E+02 0.0026 24.1 6.0 45 165-210 5-49 (202)
104 COG1969 HyaC Ni,Fe-hydrogenase 39.1 26 0.00057 28.0 2.3 37 181-217 96-150 (227)
105 COG5547 Small integral membran 39.0 41 0.0009 21.2 2.7 13 188-200 3-15 (62)
106 PF12420 DUF3671: Protein of u 39.0 1.1E+02 0.0025 21.6 5.4 19 185-203 38-56 (104)
107 COG4499 Predicted membrane pro 38.3 59 0.0013 28.8 4.5 30 30-59 39-69 (434)
108 KOG0811 SNARE protein PEP12/VA 37.8 2E+02 0.0044 24.2 7.5 15 175-189 223-237 (269)
109 PRK09697 protein secretion pro 37.6 27 0.00059 25.1 2.0 28 185-214 17-44 (139)
110 KOG3369 Transport protein part 37.1 2.1E+02 0.0045 22.5 9.4 54 36-91 111-168 (199)
111 PF14992 TMCO5: TMCO5 family 36.8 2.6E+02 0.0057 23.7 10.5 17 181-197 207-223 (280)
112 PHA02557 22 prohead core prote 35.8 84 0.0018 26.3 4.8 94 78-172 89-190 (271)
113 PF10392 COG5: Golgi transport 35.7 1.8E+02 0.0038 21.4 6.7 44 143-186 51-94 (132)
114 PF11675 DUF3271: Protein of u 35.6 1.4E+02 0.0031 24.5 6.0 56 2-60 27-82 (249)
115 PF07172 GRP: Glycine rich pro 35.4 43 0.00093 23.4 2.7 17 193-209 4-20 (95)
116 PF13937 DUF4212: Domain of un 35.0 1.1E+02 0.0023 20.8 4.5 21 184-204 3-23 (81)
117 PF03904 DUF334: Domain of unk 34.7 2.6E+02 0.0055 22.9 8.2 21 197-217 154-174 (230)
118 PHA02975 hypothetical protein; 34.7 53 0.0012 21.4 2.8 6 198-203 51-56 (69)
119 PF05399 EVI2A: Ectropic viral 34.6 32 0.00069 27.7 2.1 18 192-209 126-143 (227)
120 PTZ00382 Variant-specific surf 34.2 23 0.00051 24.7 1.2 13 204-216 82-94 (96)
121 PHA03164 hypothetical protein; 34.0 56 0.0012 21.8 2.9 18 194-211 60-77 (88)
122 PF10031 DUF2273: Small integr 33.4 55 0.0012 20.0 2.7 11 187-197 2-12 (51)
123 PF01102 Glycophorin_A: Glycop 33.2 54 0.0012 24.1 3.0 11 196-206 68-78 (122)
124 KOG3220 Similar to bacterial d 33.1 2.3E+02 0.005 23.0 6.7 57 109-169 135-191 (225)
125 PHA03011 hypothetical protein; 32.3 1.8E+02 0.0039 20.5 5.3 55 111-168 63-117 (120)
126 PF06008 Laminin_I: Laminin Do 31.9 1.4E+02 0.0031 24.6 5.8 46 133-178 56-101 (264)
127 PF08372 PRT_C: Plant phosphor 30.9 1.9E+02 0.0042 22.1 5.9 12 180-191 82-93 (156)
128 PF13908 Shisa: Wnt and FGF in 30.5 24 0.00052 27.4 0.9 16 199-214 82-97 (179)
129 COG4064 MtrG Tetrahydromethano 30.4 1.6E+02 0.0035 19.3 6.9 29 157-187 22-50 (75)
130 PF13706 PepSY_TM_3: PepSY-ass 30.3 93 0.002 17.4 3.1 12 188-199 4-15 (37)
131 COG1459 PulF Type II secretory 30.1 3.5E+02 0.0077 24.1 8.2 16 151-166 130-145 (397)
132 PF15339 Afaf: Acrosome format 30.0 80 0.0017 24.6 3.6 23 193-215 129-152 (200)
133 PRK15348 type III secretion sy 29.5 1.1E+02 0.0024 25.4 4.6 25 180-204 209-233 (249)
134 KOG4827 Uncharacterized conser 29.4 36 0.00077 27.2 1.6 20 185-204 238-257 (279)
135 PRK10381 LPS O-antigen length 29.4 79 0.0017 27.9 4.0 16 186-201 34-49 (377)
136 PF01034 Syndecan: Syndecan do 29.1 20 0.00042 23.2 0.1 21 192-212 9-29 (64)
137 PRK14125 cell division suppres 29.0 86 0.0019 22.2 3.4 14 186-199 2-15 (103)
138 PLN03223 Polycystin cation cha 28.9 97 0.0021 32.1 4.8 44 128-171 1580-1623(1634)
139 PF08999 SP_C-Propep: Surfacta 28.9 1E+02 0.0022 20.9 3.4 20 191-210 32-51 (93)
140 PF11166 DUF2951: Protein of u 28.9 2.1E+02 0.0045 20.0 8.9 9 190-198 70-78 (98)
141 PF01708 Gemini_mov: Geminivir 28.9 19 0.00041 24.8 0.1 27 189-215 34-60 (91)
142 PF06422 PDR_CDR: CDR ABC tran 28.7 67 0.0014 22.6 2.8 29 175-203 35-63 (103)
143 PF05440 MtrB: Tetrahydrometha 28.7 1.1E+02 0.0023 21.6 3.7 19 187-205 74-92 (97)
144 TIGR02956 TMAO_torS TMAO reduc 28.6 5.7E+02 0.012 25.1 12.2 6 187-192 326-331 (968)
145 PF13980 UPF0370: Uncharacteri 28.5 1.1E+02 0.0023 19.4 3.3 12 187-198 2-13 (63)
146 KOG4433 Tweety transmembrane/c 28.4 3.1E+02 0.0068 25.1 7.4 13 133-145 131-143 (526)
147 PF10039 DUF2275: Predicted in 28.3 97 0.0021 25.2 4.0 30 180-210 22-51 (218)
148 PF11026 DUF2721: Protein of u 28.3 2.4E+02 0.0052 20.6 7.1 17 181-197 53-69 (130)
149 KOG2740 Clathrin-associated pr 28.3 1.6E+02 0.0034 26.0 5.4 37 58-94 60-96 (418)
150 PF13172 PepSY_TM_1: PepSY-ass 28.2 1.1E+02 0.0024 16.6 3.8 15 185-199 2-16 (34)
151 PF05527 DUF758: Domain of unk 27.9 1.6E+02 0.0035 23.3 5.1 79 69-157 107-185 (186)
152 KOG0862 Synaptobrevin/VAMP-lik 27.9 3.3E+02 0.0072 22.1 8.1 67 130-198 119-196 (216)
153 PHA01811 hypothetical protein 27.9 75 0.0016 20.4 2.6 18 44-61 5-22 (78)
154 PF06695 Sm_multidrug_ex: Puta 27.4 2E+02 0.0043 20.9 5.2 13 185-197 65-77 (121)
155 PHA02673 ORF109 EEV glycoprote 27.4 1.7E+02 0.0038 22.4 5.0 9 184-192 24-32 (161)
156 PF07439 DUF1515: Protein of u 27.2 2.4E+02 0.0052 20.3 7.6 47 130-176 9-59 (112)
157 COG3685 Uncharacterized protei 26.8 2.7E+02 0.0058 21.6 5.9 22 133-155 43-64 (167)
158 PF14914 LRRC37AB_C: LRRC37A/B 26.8 69 0.0015 24.3 2.7 13 191-203 118-130 (154)
159 PF04531 Phage_holin_1: Bacter 26.7 52 0.0011 22.4 1.9 24 183-206 2-25 (84)
160 COG3524 KpsE Capsule polysacch 26.5 90 0.0019 26.8 3.6 18 129-146 230-247 (372)
161 PHA03386 P10 fibrous body prot 26.3 1.4E+02 0.003 20.8 3.9 15 129-143 19-33 (94)
162 PF04999 FtsL: Cell division p 26.2 1.7E+02 0.0038 19.9 4.6 12 199-210 21-32 (97)
163 PRK13739 conjugal transfer pro 26.1 3.2E+02 0.0069 21.6 6.3 45 165-210 5-49 (198)
164 PRK10299 PhoPQ regulatory prot 26.1 93 0.002 18.6 2.6 24 191-214 3-28 (47)
165 PHA02947 S-S bond formation pa 26.0 59 0.0013 26.2 2.3 20 191-210 176-195 (215)
166 KOG3658 Tumor necrosis factor- 26.0 84 0.0018 29.9 3.6 28 187-214 677-704 (764)
167 COG3074 Uncharacterized protei 25.9 2E+02 0.0043 18.9 6.2 45 128-172 17-61 (79)
168 PF13163 DUF3999: Protein of u 25.5 61 0.0013 29.1 2.6 22 189-210 406-427 (429)
169 PF09574 DUF2374: Protein of 25.2 1E+02 0.0022 17.9 2.5 19 194-212 18-36 (42)
170 PF07438 DUF1514: Protein of u 25.1 69 0.0015 20.6 2.1 7 195-201 2-8 (66)
171 PF08113 CoxIIa: Cytochrome c 25.0 1.3E+02 0.0027 16.7 2.8 12 201-212 14-25 (34)
172 PF03670 UPF0184: Uncharacteri 24.8 1.2E+02 0.0025 20.7 3.3 30 158-187 41-70 (83)
173 PRK00807 50S ribosomal protein 24.7 1.1E+02 0.0023 18.8 2.8 22 38-59 10-31 (52)
174 PF04799 Fzo_mitofusin: fzo-li 24.7 2.8E+02 0.006 21.7 5.8 48 131-178 118-165 (171)
175 PRK12430 putative bifunctional 24.5 1.2E+02 0.0027 26.6 4.2 39 159-197 103-141 (379)
176 TIGR03545 conserved hypothetic 24.4 3.6E+02 0.0078 25.2 7.5 67 109-176 168-238 (555)
177 PF14004 DUF4227: Protein of u 24.3 1.3E+02 0.0027 19.9 3.3 20 187-206 2-21 (71)
178 PHA02690 hypothetical protein; 24.3 2.3E+02 0.005 19.1 8.1 35 176-210 30-64 (90)
179 PRK14891 50S ribosomal protein 24.3 76 0.0017 23.5 2.5 23 38-60 13-35 (131)
180 PF03555 Flu_C_NS2: Influenza 24.1 1.2E+02 0.0026 18.1 2.8 32 143-174 5-37 (57)
181 PF05659 RPW8: Arabidopsis bro 23.8 1.4E+02 0.003 22.6 3.9 21 174-194 79-99 (147)
182 PRK15471 chain length determin 23.5 1.2E+02 0.0027 26.1 4.1 15 186-200 25-39 (325)
183 PF10168 Nup88: Nuclear pore c 23.5 4.2E+02 0.0091 25.7 7.9 23 139-161 592-614 (717)
184 cd01617 DCX Ubiquitin-like dom 23.2 1.5E+02 0.0032 19.7 3.6 49 25-73 25-78 (80)
185 TIGR02808 short_TIGR02808 cons 23.1 92 0.002 18.1 2.1 19 194-212 18-36 (42)
186 TIGR01195 oadG_fam sodium pump 23.1 1.1E+02 0.0024 20.6 3.0 15 199-213 13-27 (82)
187 PF10661 EssA: WXG100 protein 23.1 1E+02 0.0022 23.3 3.1 7 198-204 125-131 (145)
188 PF00664 ABC_membrane: ABC tra 22.9 3.6E+02 0.0078 20.8 9.9 22 132-153 166-187 (275)
189 PF12325 TMF_TATA_bd: TATA ele 22.7 2.4E+02 0.0051 20.6 4.8 43 129-171 68-110 (120)
190 PF00429 TLV_coat: ENV polypro 22.6 79 0.0017 29.5 2.9 22 128-149 441-462 (561)
191 COG2443 Sss1 Preprotein transl 22.5 2.3E+02 0.0049 18.4 5.6 36 174-209 19-54 (65)
192 PF11190 DUF2976: Protein of u 22.4 1.1E+02 0.0025 21.0 2.9 25 185-211 56-80 (87)
193 TIGR02120 GspF general secreti 22.4 4.3E+02 0.0094 23.1 7.5 16 196-211 375-390 (399)
194 KOG2662 Magnesium transporters 22.3 3.4E+02 0.0074 24.3 6.5 81 128-215 317-407 (414)
195 KOG3230 Vacuolar assembly/sort 22.3 1.1E+02 0.0024 24.5 3.1 23 136-158 133-155 (224)
196 COG1340 Uncharacterized archae 22.3 5E+02 0.011 22.2 9.1 48 129-184 138-185 (294)
197 PF06789 UPF0258: Uncharacteri 21.9 45 0.00098 25.4 0.9 25 187-211 125-149 (159)
198 PRK11466 hybrid sensory histid 21.9 7.5E+02 0.016 24.1 12.1 6 205-210 344-349 (914)
199 PF03238 ESAG1: ESAG protein; 21.9 2.3E+02 0.005 23.0 4.9 55 147-201 7-61 (231)
200 PF14898 DUF4491: Domain of un 21.7 60 0.0013 22.6 1.4 28 192-219 34-68 (94)
201 cd07912 Tweety_N N-terminal do 21.6 5.4E+02 0.012 23.2 7.8 13 160-172 168-180 (418)
202 PRK10573 type IV pilin biogene 21.4 5.6E+02 0.012 22.4 8.4 76 134-213 315-391 (399)
203 PF02009 Rifin_STEVOR: Rifin/s 21.4 90 0.0019 26.7 2.7 6 16-21 19-24 (299)
204 PF10875 DUF2670: Protein of u 21.3 99 0.0022 22.6 2.5 26 187-212 18-43 (139)
205 cd00472 Ribosomal_L24e_L24 Rib 21.2 1.2E+02 0.0026 18.8 2.6 23 38-60 12-34 (54)
206 TIGR00869 sec62 protein transl 21.1 2E+02 0.0044 23.6 4.6 11 205-215 170-180 (232)
207 KOG0972 Huntingtin interacting 21.0 2E+02 0.0043 24.6 4.6 16 78-93 246-261 (384)
208 PF00306 ATP-synt_ab_C: ATP sy 21.0 1.3E+02 0.0028 21.3 3.2 39 147-185 5-45 (113)
209 PF03607 DCX: Doublecortin; I 20.7 1.4E+02 0.0031 18.6 3.0 48 25-72 8-58 (60)
210 PF04048 Sec8_exocyst: Sec8 ex 20.7 2.3E+02 0.0051 21.0 4.6 8 76-83 25-32 (142)
211 PF05545 FixQ: Cbb3-type cytoc 20.7 2E+02 0.0043 17.0 4.0 18 193-210 11-28 (49)
212 PF05957 DUF883: Bacterial pro 20.6 2.9E+02 0.0062 18.8 8.9 6 183-188 69-74 (94)
213 PF12279 DUF3619: Protein of u 20.6 1.7E+02 0.0036 21.8 3.7 18 185-202 67-84 (131)
214 PF13044 DUF3904: Protein of u 20.4 1.1E+02 0.0023 25.6 2.9 36 179-214 399-435 (436)
215 PF10831 DUF2556: Protein of u 20.4 1.5E+02 0.0031 17.9 2.7 15 190-204 3-17 (53)
216 COG3771 Predicted membrane pro 20.4 73 0.0016 21.9 1.6 14 204-217 50-63 (97)
217 PF13627 LPAM_2: Prokaryotic l 20.0 1.1E+02 0.0024 15.6 1.8 10 206-215 7-16 (24)
218 PRK09662 GspL-like protein; Pr 20.0 79 0.0017 26.8 2.1 23 182-204 124-146 (286)
No 1
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-67 Score=403.07 Aligned_cols=215 Identities=70% Similarity=1.107 Sum_probs=208.3
Q ss_pred CceEEEEEEeCCeeEEeecCCCCCHHHHHHHHhccCCCC-CCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHH
Q 027612 4 KSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPAS-NNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (221)
Q Consensus 4 ~~i~Ya~Iar~~~iLae~~~~~~~~~~ia~~iL~ki~~~-~~k~~~~~~~~~f~~l~~~~~~~~~i~d~~~~~~~af~fL 82 (221)
|+|+|++||||++|||||++.+|||.+++.++|+|+|++ ++|++|.+|+|+|||+.+||++|+|++|++.++++||.||
T Consensus 1 m~iiYs~VARGTvvLaeft~~~gNf~sva~qiL~klp~~~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaFL 80 (217)
T KOG0859|consen 1 MSIIYSFVARGTVILAEFTEFSGNFSSIAAQILQKLPSSSNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAFL 80 (217)
T ss_pred CceeEEEEecceEEEEeeeeccCCHHHHHHHHHHhCCCCCCCceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHHH
Confidence 579999999999999999999999999999999999998 5699999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccchhhHHHHHHhhhhcCCchhhhHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhh
Q 027612 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELL 162 (221)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l 162 (221)
++|++.|.+.|+. ...++.+|+++.+|++.|++.|++|.++|. .|++.+++.+++|+|++|.||||++++|||+||.|
T Consensus 81 e~Ik~~F~k~YG~-~a~ta~AysmN~EFs~vL~qqm~y~s~~p~-id~lskvkaqv~evk~vM~eNIekvldRGekiELL 158 (217)
T KOG0859|consen 81 ERIKEDFKKRYGG-GAHTAVAYSMNKEFSSVLKQQMQYCSEHPE-ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELL 158 (217)
T ss_pred HHHHHHHHHHhcc-chhHHHHhHhHHHHHHHHHHHHHHHHcCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEee
Confidence 9999999999964 477788999999999999999999999998 69999999999999999999999999999999999
Q ss_pred HHhhhhHHHhHHHHhhccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccCCccC
Q 027612 163 VDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIVLSVCHGFNCG 220 (221)
Q Consensus 163 ~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~~v~~~~~~i~~~~C~gf~C~ 220 (221)
++||++|+.++..|++++++++|+|||+|.|+.+++++++++++++|++.+||||.|-
T Consensus 159 VdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iyiiv~~~CgG~~~~ 216 (217)
T KOG0859|consen 159 VDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIYIIVARRCGGFTCP 216 (217)
T ss_pred echhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHHHHHHHhccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999985
No 2
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-35 Score=228.89 Aligned_cols=194 Identities=22% Similarity=0.431 Sum_probs=172.6
Q ss_pred ceEEEEEEe--CCeeEEeecC---CCCC----HHHHHHHHhccCCCC-CCeEEEEeCCeEEEEEEeCCEEEEEEecCCCC
Q 027612 5 SLIYAFVAR--GNVVLAEYTE---FSGN----FNSIAYQCLQKLPAS-NNKFTYNCDAHTFNYLVDNGYTYCVVADESSG 74 (221)
Q Consensus 5 ~i~Ya~Iar--~~~iLae~~~---~~~~----~~~ia~~iL~ki~~~-~~k~~~~~~~~~f~~l~~~~~~~~~i~d~~~~ 74 (221)
||.+++|+| ++.+||...+ .+++ +++.++.+++++.+. +++.|.+.++|.|||+++.+++|+++||.+||
T Consensus 1 mi~~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s~~r~Sietg~f~fHfli~~~Vcylvicd~~yP 80 (216)
T KOG0862|consen 1 MILLTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQSPTRCSIETGPFVFHFLIESGVCYLVICDKSYP 80 (216)
T ss_pred CceeEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCCCcccccccCCeEEEEEecCCEEEEEEecCCCc
Confidence 689999999 5699986544 2333 367889999999988 78999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhcCCCCCC-CCCCCCccchhhHHHHHHhhhhcCCchhhhHHHHHHHhhhhhhhhhhhcHHHHH
Q 027612 75 RQIPMAFLERVKDEFVSKYGGGKAA-TAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVL 153 (221)
Q Consensus 75 ~~~af~fL~~i~~~f~~~~~~~~~~-~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~v~~im~~ni~~~l 153 (221)
+.+||.||+++.++|...|...... .+.||++ .+|++.|++..+.|| |+...+.+.++.+++.+|+.+|.+||+.++
T Consensus 81 ~kLAF~YLedL~~EF~~~~~~~~~~~~~RPY~F-ieFD~~IQk~Kk~yn-d~r~~~n~~~~n~el~~v~~im~~niedvl 158 (216)
T KOG0862|consen 81 RKLAFSYLEDLAQEFDKSYGKNIIQPASRPYAF-IEFDTFIQKTKKRYN-DTRSQRNLLKLNQELQDVQRIMVENLEDVL 158 (216)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCccCCCeeE-EehhHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999755444 5789999 899999999999995 566569999999999999999999999999
Q ss_pred HhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHHHHHHHhHHHHHHHH
Q 027612 154 DRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLG 200 (221)
Q Consensus 154 ~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~ 200 (221)
.|||.|+.+...+.+|+..|+..+++|+.++++..|.+|.-++.++.
T Consensus 159 ~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa~~~~~~ 205 (216)
T KOG0862|consen 159 QRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAAYVVFFV 205 (216)
T ss_pred hhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999984444433
No 3
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.2e-31 Score=201.77 Aligned_cols=152 Identities=25% Similarity=0.395 Sum_probs=137.7
Q ss_pred HHHHHHHhccCCCCCCeEEEEeCCeEEEEE-EeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhcCCCCCCCCCCCCcc
Q 027612 29 NSIAYQCLQKLPASNNKFTYNCDAHTFNYL-VDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLN 107 (221)
Q Consensus 29 ~~ia~~iL~ki~~~~~k~~~~~~~~~f~~l-~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~ 107 (221)
..+++.+.++.+|+. +++++.+.|.+|.. ..||+++++++|.+||.++||.+|.++.++|....+..+|+...+..+
T Consensus 41 ~F~sktvaeRt~~g~-rqsvk~~~Y~~h~yvrndgL~~V~~~D~eYP~rvA~tLL~kvld~~~~k~~~~~W~~~~~~~~- 118 (198)
T KOG0861|consen 41 TFISKTVAERTGPGQ-RQSVKHEEYLVHVYVRNDGLCGVLIADDEYPVRVAFTLLNKVLDEFTTKVPATQWPVGETADL- 118 (198)
T ss_pred HHHHHHHHHhcCccc-ccccccceeEEEEEEecCCeeEEEEecCcCchhHHHHHHHHHHHHHhhcCcccccCcCCCcCC-
Confidence 458899999999984 88999999999954 567999999999999999999999999999988888888985544432
Q ss_pred chhhHHHHHHhhhhcCCchhhhHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHH
Q 027612 108 KEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRR 185 (221)
Q Consensus 108 ~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~ 185 (221)
.| |.|...+.+| +||.++|++.++|+++||+|.||.++|+.+|+|||+||+|++||++|+.+|+.|+++|+|.++
T Consensus 119 -~~-~~L~~~l~ky-qdP~ead~l~kvQ~EldETKiiLhkTiesVL~RgEKLDdLV~KSe~Ls~qSKmfYKsAKK~Ns 193 (198)
T KOG0861|consen 119 -SY-PYLDTLLSKY-QDPAEADPLLKVQNELDETKIILHKTIESVLERGEKLDDLVSKSENLSLQSKMFYKSAKKTNS 193 (198)
T ss_pred -Cc-hhHHHHHHHh-cChhhhChHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 34 8999999999 899999999999999999999999999999999999999999999999999999999988763
No 4
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.96 E-value=1.7e-28 Score=171.91 Aligned_cols=88 Identities=47% Similarity=0.821 Sum_probs=84.7
Q ss_pred hhHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027612 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALIL 207 (221)
Q Consensus 128 ~dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~~v~~~~~ 207 (221)
.|++.++++++++|+++|.+|++++++|||+|++|+++|++|+.+|..|+++|++++|++||+++|++++++++++++++
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~ 81 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIIL 81 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhh
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcc
Q 027612 208 IIVLSVCH 215 (221)
Q Consensus 208 ~i~~~~C~ 215 (221)
+|++.+||
T Consensus 82 ~i~~~~~g 89 (89)
T PF00957_consen 82 IIIIVICG 89 (89)
T ss_dssp HHHHTT--
T ss_pred HHHHHHhC
Confidence 99999996
No 5
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.6e-28 Score=171.98 Aligned_cols=86 Identities=41% Similarity=0.719 Sum_probs=81.5
Q ss_pred hhHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027612 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALIL 207 (221)
Q Consensus 128 ~dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~~v~~~~~ 207 (221)
.+++.++|++++||.+||++|++|+||||++|++|+++|++|+..|..|+++|.+++|+|||++.|+.++++++++++++
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~ 107 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV 107 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999988888777
Q ss_pred HHHhhh
Q 027612 208 IIVLSV 213 (221)
Q Consensus 208 ~i~~~~ 213 (221)
+|++++
T Consensus 108 iiii~~ 113 (116)
T KOG0860|consen 108 VIIIYI 113 (116)
T ss_pred HHHHHH
Confidence 777665
No 6
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=99.90 E-value=3e-23 Score=160.43 Aligned_cols=180 Identities=22% Similarity=0.295 Sum_probs=141.4
Q ss_pred eEEEEEEeCC--eeEEe-ecCCCCCH--HHHHHHHhccCCCC-CCeEEEEeCCeEEEEEEe-CCEEEEEEecCCCCcchH
Q 027612 6 LIYAFVARGN--VVLAE-YTEFSGNF--NSIAYQCLQKLPAS-NNKFTYNCDAHTFNYLVD-NGYTYCVVADESSGRQIP 78 (221)
Q Consensus 6 i~Ya~Iar~~--~iLae-~~~~~~~~--~~ia~~iL~ki~~~-~~k~~~~~~~~~f~~l~~-~~~~~~~i~d~~~~~~~a 78 (221)
++|..+..+. .+|++ ++..+..| ...+.++|.++.|. .++.+++.++|.|||... +|++|+|+++++||.++|
T Consensus 3 s~~~~~~~~~~~~~~~~~~s~~~~~ff~~~~v~~~l~~~~~~~a~~~~ies~~~~~~~~~~s~gi~y~~~~~~e~p~~la 82 (190)
T COG5143 3 SISLFRVKGEPLRTLSDAESLSSFSFFHRSKVKEVLRFLSKTSASRASIESGDYFFHYLKMSSGIVYVPISDKEYPNKLA 82 (190)
T ss_pred eEEEEeecCCcceeeccccccCcccccccchHHHHHHHhcccccchhccccCceEEEEEecCCCceeEEecccccchhhh
Confidence 4555565554 33442 32222233 34667777776655 456678889999998865 599999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCC-CCCCCccchhhHHHHHHhhhhcCCchhhhHHHHHHHhhhhhhhhhhhcHHHHHHhhh
Q 027612 79 MAFLERVKDEFVSKYGGGKAAT-APANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGE 157 (221)
Q Consensus 79 f~fL~~i~~~f~~~~~~~~~~~-~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~v~~im~~ni~~~l~Rge 157 (221)
+..++++..+|........+.. ..++.+ .+|++.+++ .| ++|...|++.+++.+++||+.+|.+|+++++.|||
T Consensus 83 ~~~~~~~~~~~~~s~~~~~~~d~~~~~~~-~~~d~~~e~---~y-~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~e 157 (190)
T COG5143 83 YGYLNSIATEFLKSSALEQLIDDTVGIMR-VNIDKVIEK---GY-RDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDE 157 (190)
T ss_pred hHHHHhhccHhhhhhhHhhcccCccchhh-hhHHHHHHh---hc-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999998877664444432 333333 567766665 26 67888899999999999999999999999999999
Q ss_pred hhHhhHHhhhhHHHhHHHHhhccHHHHHHHHHH
Q 027612 158 KIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQ 190 (221)
Q Consensus 158 ~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~ 190 (221)
+|+.|+++|+.|...|+.|+++|++.+..+||+
T Consensus 158 kl~~lv~~ss~L~~~s~~~~k~akk~n~~~~~~ 190 (190)
T COG5143 158 KLDLLVDLSSILLLSSKMFPKSAKKSNLCCLIN 190 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeC
Confidence 999999999999999999999999999999995
No 7
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=99.81 E-value=4.6e-19 Score=122.45 Aligned_cols=81 Identities=33% Similarity=0.705 Sum_probs=73.3
Q ss_pred HHHHHhccCCCCC-CeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhcCCCCCCCCCCCCccch
Q 027612 31 IAYQCLQKLPASN-NKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKE 109 (221)
Q Consensus 31 ia~~iL~ki~~~~-~k~~~~~~~~~f~~l~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~ 109 (221)
+|+++|+++++.+ +|.+++.+++.|||++++|++|+|+||+++|+++||.||++|+++|.++|+...+.++.++++ .+
T Consensus 1 ~a~~il~~i~~~~~~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~~~~~~a~~~~~-~~ 79 (83)
T PF13774_consen 1 QARKILKRIPPNGNSKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGGDQIKSASPYSF-KE 79 (83)
T ss_dssp HHHHHHHTS-TTSESEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTTTTTTTSTTTTT-HH
T ss_pred CHHHHHHhcCCCCCCeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCcchhcccCCcch-hh
Confidence 5789999999765 899999999999999999999999999999999999999999999999997677888889999 88
Q ss_pred hhH
Q 027612 110 FGP 112 (221)
Q Consensus 110 f~~ 112 (221)
|++
T Consensus 80 F~~ 82 (83)
T PF13774_consen 80 FDS 82 (83)
T ss_dssp HHH
T ss_pred cCC
Confidence 875
No 8
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=97.91 E-value=5.1e-05 Score=59.37 Aligned_cols=76 Identities=25% Similarity=0.352 Sum_probs=68.8
Q ss_pred HHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHHHHHHHhHHHHHHHHHHHHH
Q 027612 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIAL 205 (221)
Q Consensus 130 kl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~~v~~~ 205 (221)
+...++...++++.+|..|+|+.++||.+...+.++.++|+..++.|++-+.+...++|||.-|+=.+++....+.
T Consensus 95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~ 170 (190)
T COG5143 95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILL 170 (190)
T ss_pred hhhhHhhcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 4667788899999999999999999999999999999999999999999999999999999999888877654443
No 9
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=96.61 E-value=0.047 Score=38.04 Aligned_cols=75 Identities=15% Similarity=0.290 Sum_probs=46.4
Q ss_pred HHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhh------c----cHHHHHHHHHHHhHHHHHHHHHH
Q 027612 133 KVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRS------T----GTKMRRKMWLQNMKIKLIVLGIL 202 (221)
Q Consensus 133 ~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~------~----a~~l~~~~~~~~~k~~iii~~~v 202 (221)
.+-+.+..++..|.+.+++. ...++.|.+.|+.|......|.. . -+++.|+.|.-++-+++.+++++
T Consensus 5 ~vT~~L~rt~~~m~~ev~~s---~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~ 81 (92)
T PF03908_consen 5 DVTESLRRTRQMMAQEVERS---ELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFL 81 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455666666666666543 44556666666666544443332 1 25667777777777777777777
Q ss_pred HHHHHHHH
Q 027612 203 IALILIIV 210 (221)
Q Consensus 203 ~~~~~~i~ 210 (221)
++++||+|
T Consensus 82 ~~v~yI~~ 89 (92)
T PF03908_consen 82 LVVLYILW 89 (92)
T ss_pred HHHHHHhh
Confidence 77777765
No 10
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=96.46 E-value=0.077 Score=36.59 Aligned_cols=78 Identities=22% Similarity=0.302 Sum_probs=49.1
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILI 208 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~~v~~~~~~ 208 (221)
+++..++..+.+.-+.+.++-+++=+=.++-+.|.+.|+....+|...++.. +...++-+-+.+++.+++++++++
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~----~~~~~k~~~i~~~iv~~~~~~i~~ 85 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKM----WWRNYKLYIIIIIIVIIIILIIII 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHhHHhhhhhhhhHHHH
Confidence 4556666666665555666666666666677778888999999988876533 334445555555555555555554
Q ss_pred HH
Q 027612 209 IV 210 (221)
Q Consensus 209 i~ 210 (221)
.+
T Consensus 86 ~~ 87 (89)
T PF00957_consen 86 VI 87 (89)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 11
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.41 E-value=0.021 Score=47.62 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=39.4
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHH
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQ 174 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~ 174 (221)
+.+.+++.++.||.+|+.+==..+=+-|+.+|.+++..++.+.++.
T Consensus 180 q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nve 225 (269)
T KOG0811|consen 180 QAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVE 225 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH
Confidence 6788999999999999988777788999999999988888776543
No 12
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=95.77 E-value=0.057 Score=43.67 Aligned_cols=77 Identities=14% Similarity=0.298 Sum_probs=47.0
Q ss_pred HHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHh---HHHHhhccHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 027612 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ---AQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALI 206 (221)
Q Consensus 130 kl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~---s~~f~~~a~~l~~~~~~~~~k~~iii~~~v~~~~ 206 (221)
.+.++++-+.|+.+...+=-+.+.++.|.+|.+....++-+.+ +..-..+|-+..|+..-+++..|+|+++++|+++
T Consensus 186 ~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~viv 265 (280)
T COG5074 186 EIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIVIV 265 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHHHH
Confidence 4556666666666666555577889999999998877776533 2223333444455555555555555554444433
No 13
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=0.1 Score=44.30 Aligned_cols=73 Identities=22% Similarity=0.388 Sum_probs=44.0
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHH---HhHHHHhhccHHHHHHHHHHHhHHHHHHHHHHH
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH---QQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILI 203 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~---~~s~~f~~~a~~l~~~~~~~~~k~~iii~~~v~ 203 (221)
+.+.++++.+.|++++-.+=--.+-..||.+|.++...++-. ..+..=-++|.+..++. |++|+++|++++|+
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkka--RK~k~i~ii~~iii 281 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKA--RKWKIIIIIILIII 281 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhceeeeehHHHHH
Confidence 567777788888888766655667788888888876554443 33333344455555554 34454444444333
No 14
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=94.51 E-value=0.77 Score=31.86 Aligned_cols=34 Identities=6% Similarity=0.089 Sum_probs=15.1
Q ss_pred HHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHH
Q 027612 131 LAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVD 164 (221)
Q Consensus 131 l~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ 164 (221)
+....+.+.+.-+-...|++.+.+.-+.|..+.+
T Consensus 10 L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~ 43 (92)
T PF03908_consen 10 LRRTRQMMAQEVERSELTLQTLEESSATLRSTND 43 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3333444444444444445545544444444443
No 15
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=93.51 E-value=0.14 Score=43.03 Aligned_cols=65 Identities=25% Similarity=0.377 Sum_probs=41.3
Q ss_pred HHHHHHHHhccCCCCCCeEEEEeCCeEEEEEEeC--CEEEEEEecCCCCcchHHHHHHHHHHHHHhhcC
Q 027612 28 FNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN--GYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (221)
Q Consensus 28 ~~~ia~~iL~ki~~~~~k~~~~~~~~~f~~l~~~--~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~ 94 (221)
.+.+++.+|=.=... ..+|++++|..+|...| +++|++|-..-..-.-+=.||+.|+..|...|.
T Consensus 4 in~LI~~vlleeR~~--~~~~~~d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~ 70 (279)
T PF04086_consen 4 INALIRDVLLEERSG--NSSFTYDNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYK 70 (279)
T ss_dssp HHHHHHHTGGG---------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhheeeccC--CCceeEcCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHh
Confidence 345666665432222 34689999999988765 699999999888888888899999999999885
No 16
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.46 E-value=3.1 Score=30.11 Aligned_cols=57 Identities=19% Similarity=0.374 Sum_probs=31.6
Q ss_pred cHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027612 148 NIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIV 210 (221)
Q Consensus 148 ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~~v~~~~~~i~ 210 (221)
.++.+-+|- |.|.+-|+.-...|...++ +.=++-..-.+=+.+++++++++++..|+
T Consensus 58 kL~~L~dra---d~L~~~as~F~~~A~klkr---k~wWkn~Km~~il~~v~~i~l~iiii~~~ 114 (116)
T KOG0860|consen 58 KLDELDDRA---DQLQAGASQFEKTAVKLKR---KMWWKNCKMRIILGLVIIILLVVIIIYIF 114 (116)
T ss_pred hHHHHHHHH---HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555 5555678888888887755 44444433334444444444444444444
No 17
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.21 E-value=0.6 Score=42.09 Aligned_cols=86 Identities=23% Similarity=0.335 Sum_probs=63.4
Q ss_pred EEEEEEeCCeeEEeecCCCCCH----HHHHHHHhccCCCCCCeEEEEeCCeEEEEEEe--CCEEEEEEecCCCCcchHHH
Q 027612 7 IYAFVARGNVVLAEYTEFSGNF----NSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD--NGYTYCVVADESSGRQIPMA 80 (221)
Q Consensus 7 ~Ya~Iar~~~iLae~~~~~~~~----~~ia~~iL~ki~~~~~k~~~~~~~~~f~~l~~--~~~~~~~i~d~~~~~~~af~ 80 (221)
.++.+.+|+.+|-.|.....+| +.+++.+|-.-.. +-.+++.+.|+.-|-.+ -+++|+|+-..-..-..+-.
T Consensus 4 ~faIFtkgG~vLw~~~~~~~~~~~~in~lI~~~ll~er~--~~~~~~~~~yTlk~q~~N~~~lvfvvvfqki~~L~yv~~ 81 (587)
T KOG0781|consen 4 QFAIFTKGGLVLWCYQEVGDNLKGPINALIRSVLLSERG--GVNSFTFEAYTLKYQLDNQYSLVFVVVFQKILTLTYVDK 81 (587)
T ss_pred eeeeecCCcEEEEEecccchhccchHHHHHHHHHHHhhc--CcccCchhheeEeeeecCCccEEEEEEEeccchhhhHHH
Confidence 5788899999999998765554 4555555433111 12237778888777655 47899999988888888889
Q ss_pred HHHHHHHHHHhhcC
Q 027612 81 FLERVKDEFVSKYG 94 (221)
Q Consensus 81 fL~~i~~~f~~~~~ 94 (221)
||+++.+.|...|.
T Consensus 82 ll~~v~~~f~e~~~ 95 (587)
T KOG0781|consen 82 LLNDVLNLFREKYD 95 (587)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999885
No 18
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=91.12 E-value=1.7 Score=35.99 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q 027612 192 MKIKLIVLGILIALILI 208 (221)
Q Consensus 192 ~k~~iii~~~v~~~~~~ 208 (221)
++.|++++++++++++.
T Consensus 228 ~~~~~~i~~v~~~Fi~m 244 (251)
T PF09753_consen 228 CWTWLMIFVVIIVFIMM 244 (251)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555444444333
No 19
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=91.09 E-value=2.9 Score=27.46 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=23.2
Q ss_pred hhhhHhhHHhhhhHHHhHHHHhhccHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027612 156 GEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILII 209 (221)
Q Consensus 156 ge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~~v~~~~~~i 209 (221)
.++++.++..++.+.........+-.++.-...| -+.++++++|.+++++|
T Consensus 19 ~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW---~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 19 EERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW---IWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4445555555555554444444433444433322 22245555555555444
No 20
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=89.81 E-value=5.4 Score=30.01 Aligned_cols=84 Identities=12% Similarity=0.146 Sum_probs=45.9
Q ss_pred HHHhccCCCC---------CCeEEEEeCCeEEEEEE-eCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhcCCCCC-CCC
Q 027612 33 YQCLQKLPAS---------NNKFTYNCDAHTFNYLV-DNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKA-ATA 101 (221)
Q Consensus 33 ~~iL~ki~~~---------~~k~~~~~~~~~f~~l~-~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~~~~~-~~~ 101 (221)
+.+..++.|. ..-.+++.+.|..|+.- -.|+-|+++||+..+. ..-.+++.+.+.|..-...+.. ...
T Consensus 46 ~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~dyV~KNPfy~~~ 124 (142)
T PF04099_consen 46 KAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCFETPTGLKFVLITDPNVPS-LRDELLRIYYELYVDYVVKNPFYSLE 124 (142)
T ss_dssp HHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEEE-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHHHHHHS-TTS-TT
T ss_pred HHHHHHhCCCCcccccccceeEEEEEeCCEEEEEEEcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 3455666661 24567888999999875 5899999999999863 4444666666666443322211 111
Q ss_pred CCCCccchhhHHHHHHh
Q 027612 102 PANGLNKEFGPKLKELM 118 (221)
Q Consensus 102 ~~~~~~~~f~~~l~~~~ 118 (221)
.|-. +..|+..|++++
T Consensus 125 ~pI~-~~lF~~~l~~~~ 140 (142)
T PF04099_consen 125 MPIR-CELFDTKLDQYV 140 (142)
T ss_dssp S-----HHHHHHHHHHH
T ss_pred CcEe-hHHHHHHHHHHH
Confidence 1111 245776666655
No 21
>PF09426 Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro: IPR019005 This entry represents the N-terminal domain of vacuolar R-SNARE Nyv1, which adopts a longin fold []. Vacuolar v-SNARE is required for docking and is only involved in homotypic vacuole fusion. Nyv1 is required for Ca(2+) efflux from the vacuolar lumen, a required signal for subsequent membrane fusion events, by inhibiting vacuolar Ca(2+)-ATPase PMC1 and promoting Ca(2+) release when forming trans-SNARE assemblies during the docking step. In yeast, the N-terminal domain of Nyv1 is sufficient to direct the transport of Nyv1 to limiting membrane of the vacuole []. ; PDB: 2FZ0_A.
Probab=85.80 E-value=1.4 Score=32.63 Aligned_cols=60 Identities=18% Similarity=0.321 Sum_probs=36.6
Q ss_pred HHHHHH-HHhccCCCC-CCe---EEEE-eCCeEEEEEE---eCCEEEEEEecCCCCcchHHHHHHHHHH
Q 027612 28 FNSIAY-QCLQKLPAS-NNK---FTYN-CDAHTFNYLV---DNGYTYCVVADESSGRQIPMAFLERVKD 87 (221)
Q Consensus 28 ~~~ia~-~iL~ki~~~-~~k---~~~~-~~~~~f~~l~---~~~~~~~~i~d~~~~~~~af~fL~~i~~ 87 (221)
|..++. .++.++-|- .+| ++.. .|||-.+|-. +++-+++|.+..+.|+-++...|.|++.
T Consensus 42 FH~Li~dmVlPkVV~v~GNKVTK~S~~lIDGyDCYYTT~~~d~~~vlVCFt~~~vPKILPiRlLSeLK~ 110 (141)
T PF09426_consen 42 FHKLIHDMVLPKVVPVEGNKVTKMSMHLIDGYDCYYTTEDNDDNKVLVCFTRVDVPKILPIRLLSELKG 110 (141)
T ss_dssp HHHHHHHTTGGG----SS-SSEE--S--SSSEEEEE---SS-TTEEEEEEEETTS-SSHHHHHHHHHTT
T ss_pred HHHHHhhccccceEEccCCeEEEEEeecccccceeeecccCCCCeEEEEEEecCCcceecHHHHHhhcc
Confidence 444443 335565433 233 3443 4899888876 4679999999999999999999999865
No 22
>PTZ00478 Sec superfamily; Provisional
Probab=84.34 E-value=3.9 Score=27.68 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=39.6
Q ss_pred HHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027612 152 VLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILII 209 (221)
Q Consensus 152 ~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~~v~~~~~~i 209 (221)
+.+..+.++.+.+...+.-.++.+|-+..+|=.|+-+.+-.+...+-.+++-++-|+|
T Consensus 9 ~~~~m~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iGf~imG~IGy~I 66 (81)
T PTZ00478 9 LTDKSNPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIMGFIGYSI 66 (81)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555677777777888888888888888888888777776665554444444443
No 23
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.83 E-value=2.8 Score=30.25 Aligned_cols=77 Identities=9% Similarity=0.153 Sum_probs=33.3
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhH----HhhhhHHHhHHHHhhccHHHHHHHHHHHhHHHHHHHHHHHH
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLV----DKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIA 204 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~----~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~~v~~ 204 (221)
..++.++++|.-.|..-.+--+++-....-|+.+. .-+.-|+..-.+|+.=|++-.++ .+.|++++++|++
T Consensus 36 e~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~-----l~~~m~~f~lV~~ 110 (118)
T KOG3385|consen 36 EAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGIS-----LLCWMAVFSLVAF 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcc-----hHHHHHHHHHHHH
Confidence 45666677776666553222222222222222222 12333444444454444443322 2345566665555
Q ss_pred HHHHHH
Q 027612 205 LILIIV 210 (221)
Q Consensus 205 ~~~~i~ 210 (221)
+++.+|
T Consensus 111 fi~~~~ 116 (118)
T KOG3385|consen 111 FILWVW 116 (118)
T ss_pred HHhhee
Confidence 444443
No 24
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=83.47 E-value=4.4 Score=33.04 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhc
Q 027612 180 GTKMRRKMWLQNMKIKLIVLGILIALILIIVLSVC 214 (221)
Q Consensus 180 a~~l~~~~~~~~~k~~iii~~~v~~~~~~i~~~~C 214 (221)
||+. |+..|+-|.+.++++++|++++|-...++.
T Consensus 243 aRaa-Rkkki~c~gI~~iii~viv~vv~~v~~~v~ 276 (280)
T COG5074 243 ARAA-RKKKIRCYGICFIIIIVIVVVVFKVVPFVV 276 (280)
T ss_pred HHHH-HhcceehhhhHHHHHHHHHHHHhcccchhh
Confidence 4443 344457788888888888888866555443
No 25
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=83.43 E-value=16 Score=27.10 Aligned_cols=88 Identities=17% Similarity=0.314 Sum_probs=58.1
Q ss_pred ceEEEEEEe--CCeeEEee-cCCCCC-----HHHHHHHHhccCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcc
Q 027612 5 SLIYAFVAR--GNVVLAEY-TEFSGN-----FNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQ 76 (221)
Q Consensus 5 ~i~Ya~Iar--~~~iLae~-~~~~~~-----~~~ia~~iL~ki~~~~~k~~~~~~~~~f~~l~~~~~~~~~i~d~~~~~~ 76 (221)
||..-+|.. |.++++-| .+.+.. ++...+.+..+-+.. --.+..+++.+-|...+++.++++++.+...-
T Consensus 1 MI~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel 78 (141)
T PF01217_consen 1 MIKAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKSSRNSKQ--SPIFEHDNYRIVYKRYSDLYFVVVGDENENEL 78 (141)
T ss_dssp SEEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHHTSSSSS--TSEEEETTEEEEEEEETTEEEEEEESSTSBHH
T ss_pred CEEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHHhccccc--ceeeecccceeeeEeeccEEEEEEeecccchH
Confidence 455555555 34666654 332222 233333333332222 23577899988888889999999999999988
Q ss_pred hHHHHHHHHHHHHHhhcC
Q 027612 77 IPMAFLERVKDEFVSKYG 94 (221)
Q Consensus 77 ~af~fL~~i~~~f~~~~~ 94 (221)
....||..+.+.+..-++
T Consensus 79 ~~~e~l~~~v~~l~~~~~ 96 (141)
T PF01217_consen 79 LLLEFLHRLVEVLDDYFG 96 (141)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhhhhhhhc
Confidence 899999999888877653
No 26
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=83.40 E-value=5.1 Score=25.64 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=34.5
Q ss_pred HhhHHhhhhHHHhHHHHhhccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027612 160 ELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIV 210 (221)
Q Consensus 160 ~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~~v~~~~~~i~ 210 (221)
+.+.+...+.-.++.++-+.++|=.|+-.++.-+...+..+++-++-|+|-
T Consensus 4 ~~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf~Ik 54 (61)
T PRK09400 4 NKLQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGFIIY 54 (61)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566667777788888888888888888877666555555555543
No 27
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=83.18 E-value=12 Score=36.37 Aligned_cols=10 Identities=10% Similarity=0.471 Sum_probs=4.2
Q ss_pred HHHHHhhhcc
Q 027612 206 ILIIVLSVCH 215 (221)
Q Consensus 206 ~~~i~~~~C~ 215 (221)
++.++..+||
T Consensus 429 ~~~~lGLl~G 438 (806)
T PF05478_consen 429 LCLLLGLLCG 438 (806)
T ss_pred HHHHHHHHHh
Confidence 3333344454
No 28
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.98 E-value=1 Score=44.59 Aligned_cols=45 Identities=22% Similarity=0.396 Sum_probs=36.8
Q ss_pred hhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHHHH
Q 027612 144 VMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMW 188 (221)
Q Consensus 144 im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~ 188 (221)
....-.+.+.+|||+|+.++++|++|++.+..|...|.++..++-
T Consensus 942 ~~~~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~~ 986 (993)
T KOG1983|consen 942 AASGALQPLNERGERLSRLEERTAEMANSAKQFSSTAHELTGKYK 986 (993)
T ss_pred hhhhcchhhHhhccccchHHHHHHHhhccHHHHHHHHHHHHhhhh
Confidence 333455788999999999999999999999999998877764443
No 29
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.35 E-value=29 Score=27.99 Aligned_cols=43 Identities=19% Similarity=0.423 Sum_probs=18.8
Q ss_pred hhHHHhHHHHhhccHH---HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027612 167 ENLHQQAQDFRSTGTK---MRRKMWLQNMKIKLIVLGILIALILII 209 (221)
Q Consensus 167 ~~L~~~s~~f~~~a~~---l~~~~~~~~~k~~iii~~~v~~~~~~i 209 (221)
+.|........++.+- +.|++...++-+++||++.+++++++.
T Consensus 170 ~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~il 215 (220)
T KOG1666|consen 170 ERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLIL 215 (220)
T ss_pred HHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333 334445444445555554444444333
No 30
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.37 E-value=17 Score=29.82 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=12.3
Q ss_pred HhhhhhHhhHHhhhhHHHhHHHHhhccHHHHH
Q 027612 154 DRGEKIELLVDKTENLHQQAQDFRSTGTKMRR 185 (221)
Q Consensus 154 ~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~ 185 (221)
+.|.-||++.+--+.+...-..=+++..++.+
T Consensus 177 ~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~ 208 (235)
T KOG3202|consen 177 EQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR 208 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333333332222333344444
No 31
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=78.48 E-value=1.2 Score=30.82 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=18.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhc
Q 027612 190 QNMKIKLIVLGILIALILIIVLSVC 214 (221)
Q Consensus 190 ~~~k~~iii~~~v~~~~~~i~~~~C 214 (221)
-.||.++..++.+++++++|.+..|
T Consensus 39 ~ayWpyLA~GGG~iLilIii~Lv~C 63 (98)
T PF07204_consen 39 VAYWPYLAAGGGLILILIIIALVCC 63 (98)
T ss_pred HhhhHHhhccchhhhHHHHHHHHHH
Confidence 3577888888777777777777777
No 32
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=78.10 E-value=17 Score=24.35 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=16.9
Q ss_pred hhhHhhHHhhhhHHHhHHHHhhccHHHHHHH
Q 027612 157 EKIELLVDKTENLHQQAQDFRSTGTKMRRKM 187 (221)
Q Consensus 157 e~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 187 (221)
+|||.+++|-|. .+|.-|++..+++=|..
T Consensus 22 ~rLD~iEeKVEf--tn~Ei~Qr~GkkvGRDi 50 (77)
T PRK01026 22 KRLDEIEEKVEF--TNAEIFQRIGKKVGRDI 50 (77)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhHHhhhHH
Confidence 345555555554 34566777777776554
No 33
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=77.91 E-value=18 Score=30.27 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=30.4
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHh
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 172 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~ 172 (221)
..+..+..=+.|+..|..+==.-|.+.|+-++.+.-.-++++++
T Consensus 195 ~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n 238 (283)
T COG5325 195 EEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDN 238 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHH
Confidence 34666667777777777776677889999888876554444433
No 34
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=77.50 E-value=4 Score=32.01 Aligned_cols=39 Identities=26% Similarity=0.435 Sum_probs=24.9
Q ss_pred HHHhhhhhhhhhhh--cHHHHHHhhhhhHhhHHhhhhHHHh
Q 027612 134 VKAQVSEVKGVMME--NIEKVLDRGEKIELLVDKTENLHQQ 172 (221)
Q Consensus 134 i~~~l~~v~~im~~--ni~~~l~Rge~l~~l~~ks~~L~~~ 172 (221)
.|-+++.++.+|.+ |-+.++||.-.=.+|.++-++|+..
T Consensus 21 aKiq~~~~k~~m~d~snf~~ife~~~sdse~Dd~vd~lE~~ 61 (214)
T PF06837_consen 21 AKIQIESIKPIMQDFSNFDEIFERPLSDSELDDKVDKLETD 61 (214)
T ss_pred HHHHHHhhhHHHHhccchHHHHcccCcchhHHHHHHHHhhh
Confidence 44556777788776 7788887755555555555555543
No 35
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=76.03 E-value=1.7 Score=32.87 Aligned_cols=34 Identities=26% Similarity=0.511 Sum_probs=23.1
Q ss_pred hccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhc
Q 027612 178 STGTKMRRKMWLQNMKIKLIVLGILIALILIIVLSVC 214 (221)
Q Consensus 178 ~~a~~l~~~~~~~~~k~~iii~~~v~~~~~~i~~~~C 214 (221)
+.-.++||... .|+..+|.++||.++++|++.||
T Consensus 122 kKEae~kr~K~---Cki~~Li~~~vc~~ilVivVpi~ 155 (159)
T PF06789_consen 122 KKEAELKRSKV---CKIFALIVLAVCAVILVIVVPIC 155 (159)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHheEEEEEEEE
Confidence 33345555443 35667777788888888888888
No 36
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=75.87 E-value=1.7 Score=26.61 Aligned_cols=13 Identities=31% Similarity=0.843 Sum_probs=7.8
Q ss_pred HHHhhhcc-----CCccC
Q 027612 208 IIVLSVCH-----GFNCG 220 (221)
Q Consensus 208 ~i~~~~C~-----gf~C~ 220 (221)
++.+++|. ||+|.
T Consensus 15 lLg~~I~~~~K~ygYkht 32 (50)
T PF12606_consen 15 LLGLSICTTLKAYGYKHT 32 (50)
T ss_pred HHHHHHHHHhhccccccc
Confidence 34456673 77885
No 37
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.79 E-value=53 Score=28.56 Aligned_cols=89 Identities=13% Similarity=0.280 Sum_probs=60.9
Q ss_pred CCCceEEEEEEeCCeeEEe-ec-CCCCCHHHHHHH-HhccCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcchH
Q 027612 2 SQKSLIYAFVARGNVVLAE-YT-EFSGNFNSIAYQ-CLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIP 78 (221)
Q Consensus 2 ~~~~i~Ya~Iar~~~iLae-~~-~~~~~~~~ia~~-iL~ki~~~~~k~~~~~~~~~f~~l~~~~~~~~~i~d~~~~~~~a 78 (221)
..|.+.| =.||+++++- |. +-.++..++-+- ++....-.++ ..+.++-+|||...+++-.++||.........
T Consensus 2 isglfi~--n~rGevlink~fr~dlkrs~~diFRv~vi~n~d~r~P--V~~igsttf~~~r~~nl~lvaitksN~Nva~v 77 (446)
T KOG0938|consen 2 ISGLFIY--NLRGEVLINKTFRDDLKRSIVDIFRVQVINNLDVRSP--VLTIGSTTFHHIRSSNLWLVAITKSNANVAAV 77 (446)
T ss_pred cceEEEE--eccCcEEEehhhhhhhhhhHHHHHHHhhhhccccCCC--eeEecceeEEEEeeccEEEEEEecCCCchhhH
Confidence 3444444 3588888874 43 334555554442 2333222222 45679999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 027612 79 MAFLERVKDEFVSKYG 94 (221)
Q Consensus 79 f~fL~~i~~~f~~~~~ 94 (221)
|.||.++-+.+..-+.
T Consensus 78 ~eFl~kl~avm~aYfg 93 (446)
T KOG0938|consen 78 FEFLYKLDAVMNAYFG 93 (446)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999887766553
No 38
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.54 E-value=41 Score=27.07 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=7.7
Q ss_pred hhhhhHhhHHhhhhHHHh
Q 027612 155 RGEKIELLVDKTENLHQQ 172 (221)
Q Consensus 155 Rge~l~~l~~ks~~L~~~ 172 (221)
+...++.|.+.-++|..+
T Consensus 130 ~~~~~~~L~~~n~~L~~~ 147 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQ 147 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 39
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=73.72 E-value=22 Score=23.21 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=16.7
Q ss_pred hhhHhhHHhhhhHHHhHHHHhhccHHHHHHH
Q 027612 157 EKIELLVDKTENLHQQAQDFRSTGTKMRRKM 187 (221)
Q Consensus 157 e~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 187 (221)
+|||.+++|-|. .++.-|++..+++-|..
T Consensus 19 ~rLd~iEeKVEf--~~~E~~Qr~Gkk~GRDi 47 (70)
T TIGR01149 19 KRLDEIEEKVEF--VNGEVAQRIGKKVGRDI 47 (70)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhHHhhhHH
Confidence 345555555554 34556667677776553
No 40
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=73.34 E-value=7.7 Score=26.92 Aligned_cols=12 Identities=33% Similarity=0.496 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHh
Q 027612 181 TKMRRKMWLQNM 192 (221)
Q Consensus 181 ~~l~~~~~~~~~ 192 (221)
|+.||+..|++.
T Consensus 6 kK~K~k~~l~~~ 17 (96)
T PF13800_consen 6 KKAKRKSRLRTV 17 (96)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 41
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=72.47 E-value=24 Score=23.07 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=17.6
Q ss_pred hhhhHhhHHhhhhHHHhHHHHhhccHHHHHHH
Q 027612 156 GEKIELLVDKTENLHQQAQDFRSTGTKMRRKM 187 (221)
Q Consensus 156 ge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 187 (221)
.+|||.+++|-|. .+|.-+++..+|+-|..
T Consensus 18 ~~rLd~iEeKvEf--~~~Ei~Qr~GkkiGRDi 47 (70)
T PF04210_consen 18 MKRLDEIEEKVEF--TNAEIAQRAGKKIGRDI 47 (70)
T ss_pred HHHHHHHHHHHHh--HHHHHHHHHhHHhhhHH
Confidence 3455666655554 34556667777776654
No 42
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=71.72 E-value=54 Score=26.74 Aligned_cols=25 Identities=4% Similarity=0.222 Sum_probs=11.9
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhh
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRG 156 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rg 156 (221)
|=+..++.++++|. .+++...+.++
T Consensus 97 dF~~~Lq~~Lk~V~---tde~k~~~~~e 121 (230)
T PF03904_consen 97 DFQDILQDELKDVD---TDELKNIAQNE 121 (230)
T ss_pred HHHHHHHHHHHhhc---hHHHHHHHHHH
Confidence 44555565555552 23444444433
No 43
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=70.66 E-value=8 Score=26.85 Aligned_cols=20 Identities=5% Similarity=0.096 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 027612 182 KMRRKMWLQNMKIKLIVLGI 201 (221)
Q Consensus 182 ~l~~~~~~~~~k~~iii~~~ 201 (221)
-+||..|+...+.+++..++
T Consensus 4 i~kK~K~k~~l~~~~isi~~ 23 (96)
T PF13800_consen 4 ILKKAKRKSRLRTVVISIIS 23 (96)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 46777888888877665444
No 44
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=70.12 E-value=21 Score=27.80 Aligned_cols=50 Identities=22% Similarity=0.336 Sum_probs=39.7
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhh
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRS 178 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~ 178 (221)
.-...+..++++++.-|.+.|+++-+.-++||.+..++..|...+..+..
T Consensus 109 ~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~ 158 (171)
T PF04799_consen 109 STFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLES 158 (171)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999999998888888888888887777665543
No 45
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=67.57 E-value=17 Score=23.23 Aligned_cols=44 Identities=16% Similarity=0.075 Sum_probs=30.3
Q ss_pred hhHHHhHHHHhhccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027612 167 ENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIV 210 (221)
Q Consensus 167 ~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~~v~~~~~~i~ 210 (221)
.+.-.++.++-+.++|=.|+-.++..+...+..+++-++-|+|-
T Consensus 7 ~~f~k~~~r~lk~~~KPd~~Ef~~iak~t~iG~~i~G~IGf~Ik 50 (61)
T TIGR00327 7 VEFIKEGTRVLAVCKKPDLEEYLKVAKVTGIGIIIVGIIGYIIK 50 (61)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777888888888888888877766555555555543
No 46
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.69 E-value=44 Score=28.53 Aligned_cols=41 Identities=12% Similarity=0.330 Sum_probs=22.6
Q ss_pred hHHHHhhc-cHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHhh
Q 027612 172 QAQDFRST-GTKMRRKMW-LQNMKIKLIVLGILIALILIIVLS 212 (221)
Q Consensus 172 ~s~~f~~~-a~~l~~~~~-~~~~k~~iii~~~v~~~~~~i~~~ 212 (221)
+|..|-.+ +-.+++... -++-+=|-++++++++++++|++.
T Consensus 245 ~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~ 287 (297)
T KOG0810|consen 245 NAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVV 287 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhh
Confidence 35555554 345554443 344456666766666666666543
No 47
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=64.69 E-value=65 Score=25.03 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=18.1
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHH
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVL 153 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l 153 (221)
....+++.+++.++.-+.+.++++-
T Consensus 80 ~~~e~L~~eie~l~~~L~~ei~~l~ 104 (177)
T PF07798_consen 80 SENEKLQREIEKLRQELREEINKLR 104 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888887776644
No 48
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=64.60 E-value=32 Score=21.42 Aligned_cols=44 Identities=16% Similarity=0.343 Sum_probs=34.9
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHh
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 172 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~ 172 (221)
+.+..+...+.+++++..+=-+.+-+-++-|+.+.+..+.-...
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~ 47 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANEN 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHH
Confidence 67888899999999988776677778888899888776665544
No 49
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.51 E-value=45 Score=28.52 Aligned_cols=36 Identities=19% Similarity=0.493 Sum_probs=22.9
Q ss_pred hHHHHHHHhhhhh---hhhhhhcHHHHHHhhhhhHhhHHhhh
Q 027612 129 SKLAKVKAQVSEV---KGVMMENIEKVLDRGEKIELLVDKTE 167 (221)
Q Consensus 129 dkl~~i~~~l~~v---~~im~~ni~~~l~Rge~l~~l~~ks~ 167 (221)
|.+.+++..+-|+ +++|. +++++..++||.+.+-+.
T Consensus 232 devrqie~~lvEI~~Lq~ifs---ehvl~Q~~~Id~I~d~~~ 270 (316)
T KOG3894|consen 232 DEVRQIEKRLVEISALQDIFS---EHVLQQDQNIDLIHDLQS 270 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcc
Confidence 5666666655443 44443 567888888888877433
No 50
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=64.13 E-value=65 Score=26.69 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=17.7
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHH
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 170 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~ 170 (221)
+++..++.-+++..+...+--+.--.+..+++.+..+-..++
T Consensus 192 ~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~ 233 (264)
T PF06008_consen 192 AKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELS 233 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333333334444444444444443
No 51
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.10 E-value=65 Score=27.28 Aligned_cols=35 Identities=17% Similarity=0.358 Sum_probs=23.9
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhH
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLV 163 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~ 163 (221)
..+..++..+.|+=+|+.+=-..+=+.||-+..+.
T Consensus 227 ~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID 261 (311)
T KOG0812|consen 227 KTMQNIESTISELGGIFQQLASMVSEQEETIQRID 261 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778888888888776666667776544443
No 52
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=63.97 E-value=85 Score=28.18 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=18.0
Q ss_pred chhhHHHHHHhhhhcCCchhhhHHHHHHHhhhhhhhhhhhcH
Q 027612 108 KEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENI 149 (221)
Q Consensus 108 ~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~v~~im~~ni 149 (221)
.+|...+.+..++. ++ ..+-+..+.++++.+...+...+
T Consensus 105 ~~~h~gV~~t~~si-~~--an~tv~~l~nqv~~l~~al~~t~ 143 (418)
T cd07912 105 DETHDGVVQLTYSL-RN--ANHTVAGIDNQTSDTEASLNVTV 143 (418)
T ss_pred HHHhhhHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHhhhh
Confidence 45555555555443 11 22444445555555554444333
No 53
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=61.69 E-value=38 Score=21.41 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=38.9
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHH
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQ 174 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~ 174 (221)
+.+.....-++++.++-.+.+..+-.-++.|.....+..++...-.
T Consensus 8 ~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~ 53 (66)
T PF12352_consen 8 DSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLP 53 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6788888889999999999999999999999988888877776644
No 54
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=61.54 E-value=11 Score=36.99 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 027612 181 TKMRRKMWLQNMKIKLIVLGILIALILIIVL 211 (221)
Q Consensus 181 ~~l~~~~~~~~~k~~iii~~~v~~~~~~i~~ 211 (221)
-|--++..|+.|+++|++.+++++++++.++
T Consensus 1059 ~K~~~~i~W~~yr~~il~~l~ililll~l~~ 1089 (1105)
T KOG1326|consen 1059 CKSFKFILWHRYRWYILLLLLILILLLLLAL 1089 (1105)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444678999999999877666555544443
No 55
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=61.24 E-value=73 Score=26.22 Aligned_cols=20 Identities=5% Similarity=0.276 Sum_probs=10.4
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q 027612 188 WLQNMKIKLIVLGILIALIL 207 (221)
Q Consensus 188 ~~~~~k~~iii~~~v~~~~~ 207 (221)
||--.-++++++++|+.++|
T Consensus 228 ~~~~~~i~~v~~~Fi~mvl~ 247 (251)
T PF09753_consen 228 CWTWLMIFVVIIVFIMMVLF 247 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666555555444444333
No 56
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=59.01 E-value=22 Score=27.70 Aligned_cols=107 Identities=13% Similarity=0.165 Sum_probs=55.6
Q ss_pred EEEEEecCCCCcchHHHHHHHHHHHHHhhcCCCCCCCCCCCCccchhhHHHHHHhhhhcCCchhhhHHHHHHHhhhhhhh
Q 027612 64 TYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKG 143 (221)
Q Consensus 64 ~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~v~~ 143 (221)
+|.|.+-+- -....-.|++.+..++.+...++.......-.+ -|...++..++-. +.+...| -+.++-.
T Consensus 65 IF~~L~~~l-~~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~L--Al~~a~~~~Iql~-e~~~~~~-------~vk~L~~ 133 (174)
T PF04510_consen 65 IFICLPMPL-YGEFLIPFMENLLPEISKVLLPPEEVDVEDWVL--ALTGAVCMAIQLL-ESSMRVD-------LVKELLP 133 (174)
T ss_pred HHHhCCchh-hhhHHHHHHHHHHHHHHHHcCCchhccHHHHHH--HHHHHHHHHHHHh-ccccHHH-------HHHHHHH
Confidence 456665333 445566788888888887764321100000000 1223333333222 1221112 2455566
Q ss_pred hhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHHHHHHH
Q 027612 144 VMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQN 191 (221)
Q Consensus 144 im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~ 191 (221)
+|.+.+.++++||...+-+... |+.=.+-+++.++|=+
T Consensus 134 ~mv~Sv~elV~~g~E~~~l~rg----------l~~~e~~v~~~~~~y~ 171 (174)
T PF04510_consen 134 KMVKSVKELVERGMEVGFLRRG----------LRDFESFVSRQMNWYK 171 (174)
T ss_pred HHHHHHHHHHHcccHHHHHHHH----------HHHHHHHHHHHHHHhh
Confidence 6999999999999776666533 3332345666666543
No 57
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=58.23 E-value=33 Score=27.87 Aligned_cols=16 Identities=6% Similarity=0.165 Sum_probs=9.3
Q ss_pred hhhhHHHhHHHHhhcc
Q 027612 165 KTENLHQQAQDFRSTG 180 (221)
Q Consensus 165 ks~~L~~~s~~f~~~a 180 (221)
.+..|.+.|.+..+.+
T Consensus 195 N~~~L~~~Serve~y~ 210 (244)
T KOG2678|consen 195 NSQGLMDVSERVEKYD 210 (244)
T ss_pred HHHHHHhhhHHHHHHH
Confidence 4555666666665555
No 58
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.38 E-value=40 Score=21.72 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=21.5
Q ss_pred hHhhHHhhhhHHHhHHHHhhccHHHHHHHHHHHhHHHHH
Q 027612 159 IELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLI 197 (221)
Q Consensus 159 l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~ii 197 (221)
++.+.+-+.+-..++.+|.++..+=-|+-+-+-.+-..+
T Consensus 4 ~~~~~~~~~~f~k~s~rf~krC~KPdrKEf~ki~~~~ai 42 (67)
T KOG3498|consen 4 VDQLVEPLRDFAKDSIRFVKRCTKPDRKEFTKIAKATAI 42 (67)
T ss_pred HHHhcchHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 344455555555566666666655556666554444433
No 59
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=57.10 E-value=6.9 Score=34.74 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=10.9
Q ss_pred HHHHHHHhhhccC
Q 027612 204 ALILIIVLSVCHG 216 (221)
Q Consensus 204 ~~~~~i~~~~C~g 216 (221)
++-|+-||++|+|
T Consensus 383 lvGfLcWwf~crg 395 (397)
T PF03302_consen 383 LVGFLCWWFICRG 395 (397)
T ss_pred HHHHHhhheeecc
Confidence 4678899999987
No 60
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.89 E-value=90 Score=25.40 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=12.9
Q ss_pred HHHHHHHHHhHHHHHHHHH--HHHHHHHHHh
Q 027612 183 MRRKMWLQNMKIKLIVLGI--LIALILIIVL 211 (221)
Q Consensus 183 l~~~~~~~~~k~~iii~~~--v~~~~~~i~~ 211 (221)
+-.+.-.|+-|=.+|+++| +|.+++++|+
T Consensus 199 Ll~kIk~kkrrdslILa~Vis~C~llllfy~ 229 (231)
T KOG3208|consen 199 LLQKIKIKKRRDSLILAAVISVCTLLLLFYW 229 (231)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555443 4444444443
No 61
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=55.96 E-value=79 Score=23.21 Aligned_cols=48 Identities=17% Similarity=0.355 Sum_probs=32.8
Q ss_pred EEEEeCCeE-EEEEEeCCEEEEEEec---CCCCcchHHHHHHHHHHHHHhhc
Q 027612 46 FTYNCDAHT-FNYLVDNGYTYCVVAD---ESSGRQIPMAFLERVKDEFVSKY 93 (221)
Q Consensus 46 ~~~~~~~~~-f~~l~~~~~~~~~i~d---~~~~~~~af~fL~~i~~~f~~~~ 93 (221)
.....+++. |.|+...++=|+.+++ ........-.|.+++++.|....
T Consensus 55 ~l~~~~~~~vygyvT~t~~Kfvl~~~~~~~~~~d~~ik~fF~~vh~~Y~~~~ 106 (132)
T PF04628_consen 55 LLDPFEDYKVYGYVTNTGIKFVLVHDMSDNSIRDEDIKQFFKEVHELYVKAL 106 (132)
T ss_dssp EEEEETTEEEEEEETTT--EEEEEECGGG-S--HHHHHHHHHHHHHHHHHHH
T ss_pred ceehhhhHHHHhhhccCceeEEEEEecccCCcchHHHHHHHHHHHHHHHHHc
Confidence 455667774 5687778888888887 44555678889999999987765
No 62
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=55.78 E-value=39 Score=25.57 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=23.1
Q ss_pred hhhHHHHHHhhhhcC-CchhhhHHHHHHHhhhhhhhhhhhcHHHHHHhhh
Q 027612 109 EFGPKLKELMQYCVD-HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGE 157 (221)
Q Consensus 109 ~f~~~l~~~~~~~~~-~~~~~dkl~~i~~~l~~v~~im~~ni~~~l~Rge 157 (221)
.|++.++++...-+. .|.- ..+...+.+++.-..-..+-+...|++|+
T Consensus 31 ~fk~~l~~L~sTl~~i~P~i-~eI~~~~~eld~~~~ee~e~L~~~L~~g~ 79 (147)
T PF05659_consen 31 SFKSILKRLESTLESIIPII-KEIDKLNVELDRPRQEEIERLKELLEKGK 79 (147)
T ss_pred hhhhHHHHHHHHHHHhhhHH-HHHHHHhhhcCCchhHHHHHHHHHHHHHH
Confidence 455555554422211 2322 55666666666654444444555555553
No 63
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.45 E-value=1.1e+02 Score=24.74 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=17.6
Q ss_pred cHHHHHHhhhh-hHhhHHhhhhHHHhHHHHhh
Q 027612 148 NIEKVLDRGEK-IELLVDKTENLHQQAQDFRS 178 (221)
Q Consensus 148 ni~~~l~Rge~-l~~l~~ks~~L~~~s~~f~~ 178 (221)
-+|.+|++|.. +|+|.++=..|+..-+.+..
T Consensus 137 ~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~ 168 (213)
T KOG3251|consen 137 MLDDLLESGSAILENLVEQRLTLKGTQKKILD 168 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666643 56666666666655444443
No 64
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=54.33 E-value=30 Score=19.50 Aligned_cols=16 Identities=19% Similarity=0.625 Sum_probs=9.9
Q ss_pred HHHHHHhHHHHHHHHH
Q 027612 186 KMWLQNMKIKLIVLGI 201 (221)
Q Consensus 186 ~~~~~~~k~~iii~~~ 201 (221)
+.|-||...-+.+.++
T Consensus 17 qkwirnit~cfal~vv 32 (40)
T PF13124_consen 17 QKWIRNITFCFALLVV 32 (40)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4688887765544433
No 65
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=54.21 E-value=94 Score=23.53 Aligned_cols=42 Identities=14% Similarity=0.121 Sum_probs=21.1
Q ss_pred cCCCCcchHHHHHHHHHHHHHhhcCCCCCCCCCCCCccchhhHHHHHHhhhh
Q 027612 70 DESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYC 121 (221)
Q Consensus 70 d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~ 121 (221)
+++.|-=+.....+.+.++...... ..-.+|...|.....++
T Consensus 21 ~~DDPILil~TiNe~ll~~~~~aq~----------~~l~~fk~elE~~~~~w 62 (144)
T PF11657_consen 21 SRDDPILILQTINERLLEDSAKAQQ----------EQLDQFKEELEEIASRW 62 (144)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 4555555555555555554433221 00145666777766655
No 66
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=53.73 E-value=32 Score=22.18 Aligned_cols=44 Identities=27% Similarity=0.342 Sum_probs=29.4
Q ss_pred HHHHHHhhhhcCCchhhhHHHHHHHhhhhhhhhhhhcHHHHHHh
Q 027612 112 PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (221)
Q Consensus 112 ~~l~~~~~~~~~~~~~~dkl~~i~~~l~~v~~im~~ni~~~l~R 155 (221)
+..+..++.|+.+|.......++++-++....-=+.|+.++++.
T Consensus 17 ~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~~ 60 (67)
T PF01099_consen 17 EEYKESLQKYNPPPEAVEAKLELKQCVDKLSNETRENILKLLEK 60 (67)
T ss_dssp HHHHHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34456667787777777888888988888777777788777654
No 67
>smart00096 UTG Uteroglobin.
Probab=53.46 E-value=39 Score=22.18 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=29.7
Q ss_pred HHhhhhcCCchhhhHHHHHHHhhhhhhhhhhhcHHHHHHh
Q 027612 116 ELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (221)
Q Consensus 116 ~~~~~~~~~~~~~dkl~~i~~~l~~v~~im~~ni~~~l~R 155 (221)
..+..|+.+|+..+...++++=+|....-=++||-+++++
T Consensus 23 ~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~k 62 (69)
T smart00096 23 ASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTEK 62 (69)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4455677778777888888888888777777777776654
No 68
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=53.21 E-value=5.9 Score=36.71 Aligned_cols=12 Identities=25% Similarity=0.648 Sum_probs=0.0
Q ss_pred hhhHHHHHHhhh
Q 027612 109 EFGPKLKELMQY 120 (221)
Q Consensus 109 ~f~~~l~~~~~~ 120 (221)
+|+..+.+..+.
T Consensus 481 Dfnkel~e~~~n 492 (610)
T PF01601_consen 481 DFNKELDEIFKN 492 (610)
T ss_dssp ------------
T ss_pred ChHHHHHHHHHh
Confidence 444555554433
No 69
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.06 E-value=43 Score=26.78 Aligned_cols=20 Identities=30% Similarity=0.601 Sum_probs=11.7
Q ss_pred HHHhhccHHHH-HHHHHHHhH
Q 027612 174 QDFRSTGTKMR-RKMWLQNMK 193 (221)
Q Consensus 174 ~~f~~~a~~l~-~~~~~~~~k 193 (221)
..|+..|...+ |-|||.-.-
T Consensus 170 ~~FR~tSES~NsRvm~Wsv~Q 190 (215)
T KOG1690|consen 170 ETFRDTSESANSRVMWWSVAQ 190 (215)
T ss_pred HHHHhhhhhhcceeeehhHHH
Confidence 45666666665 456775433
No 70
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=52.89 E-value=84 Score=25.61 Aligned_cols=27 Identities=4% Similarity=0.011 Sum_probs=14.2
Q ss_pred HhHHHHhhccHHHHHHHHHH-HhHHHHH
Q 027612 171 QQAQDFRSTGTKMRRKMWLQ-NMKIKLI 197 (221)
Q Consensus 171 ~~s~~f~~~a~~l~~~~~~~-~~k~~ii 197 (221)
.++...+-.+.+++++..-+ .+|+++.
T Consensus 194 ~N~~~L~~~Serve~y~ksk~s~wf~~~ 221 (244)
T KOG2678|consen 194 VNSQGLMDVSERVEKYDKSKLSYWFYIT 221 (244)
T ss_pred HHHHHHHhhhHHHHHHHHhhhhHHHHHH
Confidence 44455555666777665544 3444333
No 71
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=52.80 E-value=19 Score=24.43 Aligned_cols=6 Identities=67% Similarity=0.899 Sum_probs=2.3
Q ss_pred HHHHHH
Q 027612 193 KIKLIV 198 (221)
Q Consensus 193 k~~iii 198 (221)
|.++++
T Consensus 5 kii~ii 10 (85)
T PF11337_consen 5 KIILII 10 (85)
T ss_pred HHHHHH
Confidence 333333
No 72
>cd00633 Secretoglobin Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeri
Probab=52.62 E-value=40 Score=21.61 Aligned_cols=43 Identities=28% Similarity=0.299 Sum_probs=31.0
Q ss_pred HHHHHHhhhhcCCchhhhHHHHHHHhhhhhhhhhhhcHHHHHH
Q 027612 112 PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLD 154 (221)
Q Consensus 112 ~~l~~~~~~~~~~~~~~dkl~~i~~~l~~v~~im~~ni~~~l~ 154 (221)
..+...++.||.+|...+...++|+=+++...-=+.|+-++++
T Consensus 17 ~~y~~~L~~f~~~~~~~~A~~~lK~C~d~~~~e~k~~~~~~m~ 59 (67)
T cd00633 17 EEYKAELEKFNATPEAVEAKEKLKQCVDEQSLETKENIAKLLE 59 (67)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Confidence 3455666778778888788889998888876665666665554
No 73
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=52.37 E-value=22 Score=23.59 Aligned_cols=18 Identities=44% Similarity=1.117 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 027612 197 IVLGILIALILIIVLSVC 214 (221)
Q Consensus 197 ii~~~v~~~~~~i~~~~C 214 (221)
+++++++++++++.+.+|
T Consensus 6 ~~~g~~~ll~~v~~~~~~ 23 (75)
T PF14575_consen 6 IIVGVLLLLVLVIIVIVC 23 (75)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhheeEEEE
Confidence 344444444445455566
No 74
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=52.05 E-value=1.3e+02 Score=29.34 Aligned_cols=41 Identities=20% Similarity=0.420 Sum_probs=21.8
Q ss_pred HHhhccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc
Q 027612 175 DFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIVLSVCH 215 (221)
Q Consensus 175 ~f~~~a~~l~~~~~~~~~k~~iii~~~v~~~~~~i~~~~C~ 215 (221)
.|.....+.-...|--..-+-.++.+|+++.++....+.||
T Consensus 401 ~~~~~~~~y~~yR~~~~lil~~~llLIv~~~~lGLl~G~~G 441 (806)
T PF05478_consen 401 SFEDEYEKYDSYRWIVGLILCCVLLLIVLCLLLGLLCGCCG 441 (806)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333333333333333333444556667777777788887
No 75
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=51.27 E-value=23 Score=20.33 Aligned_cols=8 Identities=13% Similarity=0.746 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 027612 197 IVLGILIA 204 (221)
Q Consensus 197 ii~~~v~~ 204 (221)
|++++++.
T Consensus 8 IIv~V~vg 15 (38)
T PF02439_consen 8 IIVAVVVG 15 (38)
T ss_pred HHHHHHHH
Confidence 44443333
No 76
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=48.94 E-value=44 Score=21.17 Aligned_cols=8 Identities=25% Similarity=0.476 Sum_probs=4.2
Q ss_pred HhHHHHhh
Q 027612 171 QQAQDFRS 178 (221)
Q Consensus 171 ~~s~~f~~ 178 (221)
+.|..|-+
T Consensus 9 ETA~~FL~ 16 (60)
T PF06072_consen 9 ETATEFLR 16 (60)
T ss_pred ccHHHHHH
Confidence 34555655
No 77
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=48.82 E-value=18 Score=31.81 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=16.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027612 184 RRKMWLQNMKIKLIVLGILIALILII 209 (221)
Q Consensus 184 ~~~~~~~~~k~~iii~~~v~~~~~~i 209 (221)
+++-||.++...+++.+++++++..+
T Consensus 294 r~r~~~~r~~~c~~~~i~~lL~ig~~ 319 (387)
T PF12751_consen 294 RQRSWFSRFASCIYLSILLLLVIGFA 319 (387)
T ss_pred ccccHHhhhhHHHHHHHHHHHHHHHH
Confidence 45679999998877665544433333
No 78
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=48.22 E-value=92 Score=21.71 Aligned_cols=21 Identities=5% Similarity=0.098 Sum_probs=12.7
Q ss_pred HHHHHHhhhhhhhhhhhcHHH
Q 027612 131 LAKVKAQVSEVKGVMMENIEK 151 (221)
Q Consensus 131 l~~i~~~l~~v~~im~~ni~~ 151 (221)
+..-+...+++..-|..++|.
T Consensus 30 Ik~gq~~qe~v~~kld~tlD~ 50 (98)
T PF11166_consen 30 IKDGQHDQELVNQKLDRTLDE 50 (98)
T ss_pred HHHhHhhHHHHHHHHHhhHHH
Confidence 333345556666667777776
No 79
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=48.19 E-value=63 Score=19.79 Aligned_cols=44 Identities=14% Similarity=0.405 Sum_probs=33.1
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHh
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 172 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~ 172 (221)
+.+..+...+.+++++..+=-..+-+.++.|+.+.+..+.....
T Consensus 12 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~ 55 (66)
T smart00397 12 EELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVN 55 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 67788888888888887655556667788888888776666554
No 80
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.09 E-value=42 Score=26.83 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=30.5
Q ss_pred HhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHHH
Q 027612 136 AQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKM 187 (221)
Q Consensus 136 ~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 187 (221)
+.+..+|.-|.|==+-++++=|++-+--++-|=|-+.+...+.++...++.-
T Consensus 125 d~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~ 176 (217)
T KOG0859|consen 125 SKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQG 176 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHH
Confidence 3444555555554444555555554444444555688888888886666544
No 81
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.89 E-value=1.3e+02 Score=24.45 Aligned_cols=57 Identities=9% Similarity=0.095 Sum_probs=38.7
Q ss_pred hhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHH-----HHHHHHHHhHHHHHHHH
Q 027612 144 VMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKM-----RRKMWLQNMKIKLIVLG 200 (221)
Q Consensus 144 im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l-----~~~~~~~~~k~~iii~~ 200 (221)
.+..+++.+.++-+++..--.++..+++-+..+..+=+.+ .|--||.-+-...+|++
T Consensus 150 ~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L~esNf~rVN~WS~vq~~vmi~v 211 (236)
T KOG3287|consen 150 QLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNLQESNFDRVNFWSMVQTLVMILV 211 (236)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcccchhhHHHHHHHHHHHHH
Confidence 4445777778888888888888888887777666544443 34468887766555543
No 82
>PHA03240 envelope glycoprotein M; Provisional
Probab=47.71 E-value=19 Score=29.02 Aligned_cols=6 Identities=17% Similarity=0.401 Sum_probs=2.4
Q ss_pred eeEEee
Q 027612 16 VVLAEY 21 (221)
Q Consensus 16 ~iLae~ 21 (221)
..||-|
T Consensus 73 ~plC~Y 78 (258)
T PHA03240 73 HPICTY 78 (258)
T ss_pred ceeEEe
Confidence 334444
No 83
>COG4327 Predicted membrane protein [Function unknown]
Probab=47.63 E-value=47 Score=23.08 Aligned_cols=33 Identities=15% Similarity=0.424 Sum_probs=21.3
Q ss_pred hccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027612 178 STGTKMRRKMWLQNMKIKLIVLGILIALILIIV 210 (221)
Q Consensus 178 ~~a~~l~~~~~~~~~k~~iii~~~v~~~~~~i~ 210 (221)
+.+..-++..|..|..++.++.++=.++.|+.+
T Consensus 4 k~~~~~a~aywranttli~~lL~vwflVSfvvi 36 (101)
T COG4327 4 KDAEHPARAYWRANTTLIAALLGVWFLVSFVVI 36 (101)
T ss_pred cccccHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 345566777888888887776655545444443
No 84
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=46.96 E-value=18 Score=18.46 Aligned_cols=6 Identities=67% Similarity=1.165 Sum_probs=2.4
Q ss_pred HHHHHH
Q 027612 205 LILIIV 210 (221)
Q Consensus 205 ~~~~i~ 210 (221)
++++|+
T Consensus 14 ILLiIv 19 (24)
T PF09680_consen 14 ILLIIV 19 (24)
T ss_pred HHHHHh
Confidence 344443
No 85
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=46.74 E-value=20 Score=30.20 Aligned_cols=18 Identities=22% Similarity=0.384 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 027612 195 KLIVLGILIALILIIVLS 212 (221)
Q Consensus 195 ~iii~~~v~~~~~~i~~~ 212 (221)
.++|+++|+++++.||+-
T Consensus 266 lvllil~vvliiLYiWly 283 (295)
T TIGR01478 266 LVLIILTVVLIILYIWLY 283 (295)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334555666777888863
No 86
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=46.64 E-value=64 Score=19.39 Aligned_cols=44 Identities=20% Similarity=0.417 Sum_probs=31.2
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHh
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 172 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~ 172 (221)
+.+..+...+.+++++..+=-..+-+-|+.|+.+.+..+.....
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~ 49 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVN 49 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888886654455556677888887666665544
No 87
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=45.88 E-value=1.4e+02 Score=23.08 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=7.7
Q ss_pred HHHHHHHHHHH
Q 027612 80 AFLERVKDEFV 90 (221)
Q Consensus 80 ~fL~~i~~~f~ 90 (221)
.||+++++...
T Consensus 5 efL~~L~~~L~ 15 (181)
T PF08006_consen 5 EFLNELEKYLK 15 (181)
T ss_pred HHHHHHHHHHH
Confidence 57777777664
No 88
>PHA03054 IMV membrane protein; Provisional
Probab=45.29 E-value=14 Score=24.23 Aligned_cols=17 Identities=18% Similarity=0.055 Sum_probs=6.6
Q ss_pred HHHHHhHHHHHHHHHHH
Q 027612 187 MWLQNMKIKLIVLGILI 203 (221)
Q Consensus 187 ~~~~~~k~~iii~~~v~ 203 (221)
.||..+.+++++..+++
T Consensus 44 ~~~~~~~~ii~l~~v~~ 60 (72)
T PHA03054 44 GCWGWYWLIIIFFIVLI 60 (72)
T ss_pred CCchHHHHHHHHHHHHH
Confidence 34433334443333333
No 89
>PHA02650 hypothetical protein; Provisional
Probab=44.94 E-value=18 Score=24.30 Aligned_cols=14 Identities=7% Similarity=0.593 Sum_probs=5.4
Q ss_pred HHHHHhHHHHHHHH
Q 027612 187 MWLQNMKIKLIVLG 200 (221)
Q Consensus 187 ~~~~~~k~~iii~~ 200 (221)
.||..+.++++++.
T Consensus 45 ~~~~~~~~ii~i~~ 58 (81)
T PHA02650 45 SWFNGQNFIFLIFS 58 (81)
T ss_pred CCchHHHHHHHHHH
Confidence 34433333333333
No 90
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=44.92 E-value=1e+02 Score=24.90 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=11.7
Q ss_pred hhhhhHhhHHhhhhHHHhHHH
Q 027612 155 RGEKIELLVDKTENLHQQAQD 175 (221)
Q Consensus 155 Rge~l~~l~~ks~~L~~~s~~ 175 (221)
=++.|+.|+.+-+++.-....
T Consensus 13 ~~~~L~rle~qi~q~~~~~~~ 33 (251)
T COG5415 13 YTADLSRLESQIHQLDVALKK 33 (251)
T ss_pred chhhHHHHHHHHHHHHHHHHH
Confidence 345566666666665555443
No 91
>PTZ00370 STEVOR; Provisional
Probab=44.82 E-value=22 Score=29.98 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhh
Q 027612 196 LIVLGILIALILIIVLS 212 (221)
Q Consensus 196 iii~~~v~~~~~~i~~~ 212 (221)
++++++|++++++||+-
T Consensus 263 vllil~vvliilYiwly 279 (296)
T PTZ00370 263 VLLILAVVLIILYIWLY 279 (296)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455666777888863
No 92
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=44.68 E-value=45 Score=23.17 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=20.4
Q ss_pred hhHHHhHHHHhhccHHHHHH----HHHHHhHHHHHHHHHHHH
Q 027612 167 ENLHQQAQDFRSTGTKMRRK----MWLQNMKIKLIVLGILIA 204 (221)
Q Consensus 167 ~~L~~~s~~f~~~a~~l~~~----~~~~~~k~~iii~~~v~~ 204 (221)
++|...-+.|.+++.+.++. .+-+|||-.+..+++..+
T Consensus 28 EdL~peQ~h~akQaE~an~ekV~~~~aknykN~is~a~i~al 69 (108)
T KOG4782|consen 28 EDLPPEQKHFAKQAEKANQEKVKEIFAKNYKNHISFAGIGAL 69 (108)
T ss_pred hhCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 45555556666666555432 345667765555444433
No 93
>PRK13664 hypothetical protein; Provisional
Probab=44.34 E-value=44 Score=20.98 Aligned_cols=16 Identities=19% Similarity=0.382 Sum_probs=9.9
Q ss_pred HHHHHhHHHHHHHHHH
Q 027612 187 MWLQNMKIKLIVLGIL 202 (221)
Q Consensus 187 ~~~~~~k~~iii~~~v 202 (221)
.|...|++++++.+.|
T Consensus 2 ~WLadyWWilill~lv 17 (62)
T PRK13664 2 DWLAKYWWILVLVFLV 17 (62)
T ss_pred chHHHHHHHHHHHHHH
Confidence 4777888775554433
No 94
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=44.02 E-value=1.1e+02 Score=27.30 Aligned_cols=52 Identities=10% Similarity=0.098 Sum_probs=42.4
Q ss_pred CCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhcC
Q 027612 43 NNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (221)
Q Consensus 43 ~~k~~~~~~~~~f~~l~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~ 94 (221)
+.-.++..++..|.|+..+++.++||+...-+......-|+-+........+
T Consensus 53 d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l~~qL~~ly~qils~lt 104 (415)
T PF03164_consen 53 DELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQLRKQLDYLYSQILSILT 104 (415)
T ss_pred CcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHHHHHHHHHHHHHHHHhcc
Confidence 4556788899999999999999999999998877777777777777655543
No 95
>PRK11546 zraP zinc resistance protein; Provisional
Probab=43.99 E-value=70 Score=24.19 Aligned_cols=17 Identities=18% Similarity=0.389 Sum_probs=12.0
Q ss_pred hHHHHHHHhhhhhhhhh
Q 027612 129 SKLAKVKAQVSEVKGVM 145 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im 145 (221)
.++.++.+|+.+++.-|
T Consensus 89 ~kI~aL~kEI~~Lr~kL 105 (143)
T PRK11546 89 SKINAVAKEMENLRQSL 105 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66777777777776644
No 96
>PHA02844 putative transmembrane protein; Provisional
Probab=43.90 E-value=20 Score=23.71 Aligned_cols=11 Identities=18% Similarity=0.259 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 027612 194 IKLIVLGILIA 204 (221)
Q Consensus 194 ~~iii~~~v~~ 204 (221)
++++++.++++
T Consensus 51 ~ii~i~~v~~~ 61 (75)
T PHA02844 51 WILTIIFVVFA 61 (75)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 97
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=43.66 E-value=14 Score=25.41 Aligned_cols=10 Identities=40% Similarity=0.996 Sum_probs=5.6
Q ss_pred HHHHHHhhhc
Q 027612 205 LILIIVLSVC 214 (221)
Q Consensus 205 ~~~~i~~~~C 214 (221)
++.+|.+.+|
T Consensus 45 il~VilwfvC 54 (94)
T PF05393_consen 45 ILLVILWFVC 54 (94)
T ss_pred HHHHHHHHHH
Confidence 3444556677
No 98
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=41.85 E-value=60 Score=19.84 Aligned_cols=15 Identities=7% Similarity=0.328 Sum_probs=7.0
Q ss_pred HHHhHHHHHHHHHHH
Q 027612 189 LQNMKIKLIVLGILI 203 (221)
Q Consensus 189 ~~~~k~~iii~~~v~ 203 (221)
|...++-.++.++|+
T Consensus 11 y~tLrigGLi~A~vl 25 (50)
T PF02038_consen 11 YETLRIGGLIFAGVL 25 (50)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHhhccchHHHHHH
Confidence 455555544444333
No 99
>PRK10884 SH3 domain-containing protein; Provisional
Probab=41.82 E-value=1.8e+02 Score=23.31 Aligned_cols=8 Identities=0% Similarity=-0.068 Sum_probs=3.0
Q ss_pred hhhhHHHh
Q 027612 165 KTENLHQQ 172 (221)
Q Consensus 165 ks~~L~~~ 172 (221)
+-+.++..
T Consensus 147 ~l~~~~~~ 154 (206)
T PRK10884 147 QLIVAQKK 154 (206)
T ss_pred HHHHHHHH
Confidence 33333333
No 100
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.76 E-value=62 Score=27.49 Aligned_cols=35 Identities=9% Similarity=0.285 Sum_probs=26.9
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhH
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLV 163 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~ 163 (221)
..+.++-+-+.|+..|+.+==..+++.|--+|-+.
T Consensus 218 ~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRID 252 (305)
T KOG0809|consen 218 KEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRID 252 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhee
Confidence 34677777888888888887788888887776554
No 101
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=41.72 E-value=31 Score=23.36 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 027612 194 IKLIVLGILIALILIIVLSVC 214 (221)
Q Consensus 194 ~~iii~~~v~~~~~~i~~~~C 214 (221)
+..+++++|.+++.++++.++
T Consensus 6 i~~iialiv~~iiaIvvW~iv 26 (81)
T PF00558_consen 6 ILAIIALIVALIIAIVVWTIV 26 (81)
T ss_dssp --HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544444444443
No 102
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=41.00 E-value=16 Score=24.17 Aligned_cols=6 Identities=50% Similarity=0.523 Sum_probs=2.3
Q ss_pred hhhhhh
Q 027612 139 SEVKGV 144 (221)
Q Consensus 139 ~~v~~i 144 (221)
|.|+.+
T Consensus 25 ~vVksV 30 (72)
T PF12575_consen 25 NVVKSV 30 (72)
T ss_pred HHHHHH
Confidence 333333
No 103
>PF07296 TraP: TraP protein; InterPro: IPR009913 This family consists of several bacterial conjugative transfer TraP proteins from Escherichia coli and Salmonella typhimurium. TraP appears to play a minor role in conjugation and may interact with TraB, which varies in sequence along with TraP, in order to stabilise the proposed transmembrane complex formed by the tra operon products [].
Probab=40.44 E-value=1.2e+02 Score=24.05 Aligned_cols=45 Identities=7% Similarity=0.179 Sum_probs=34.0
Q ss_pred hhhhHHHhHHHHhhccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027612 165 KTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIV 210 (221)
Q Consensus 165 ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~~v~~~~~~i~ 210 (221)
.+.++...|-.|.- ++-|++-.|.=+|-++.=++-..++++|+.|
T Consensus 5 ~~~~~a~~a~~~~V-a~vLRWl~W~vky~VI~PlATmaLmalfVlw 49 (202)
T PF07296_consen 5 MSSRQAGHALRYVV-ARVLRWLFWCVKYAVIWPLATMALMALFVLW 49 (202)
T ss_pred hhhHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677776644 7789999998888777777777777788877
No 104
>COG1969 HyaC Ni,Fe-hydrogenase I cytochrome b subunit [Energy production and conversion]
Probab=39.15 E-value=26 Score=28.01 Aligned_cols=37 Identities=27% Similarity=0.495 Sum_probs=24.9
Q ss_pred HHHHHHHHHH----HhHHHHHH-------------H-HHHHHHHHHHHhhhccCC
Q 027612 181 TKMRRKMWLQ----NMKIKLIV-------------L-GILIALILIIVLSVCHGF 217 (221)
Q Consensus 181 ~~l~~~~~~~----~~k~~iii-------------~-~~v~~~~~~i~~~~C~gf 217 (221)
..+.++.||+ .+|+++.+ + +......+.|++.+|.||
T Consensus 96 ~~fw~k~w~eg~~~~ik~Ylfl~kkPh~~~~~NPia~~AyFf~~lmiv~MiltGf 150 (227)
T COG1969 96 VPFWRKAWWEGVWYQIKWYLFLGKKPHTKGGHNPIAQVAYFFYFLMIVFMILTGF 150 (227)
T ss_pred hhhhHHHHHHHHHHHhhhheeecCCCccccccCHHHHHHHHHHHHHHHHHHHHhH
Confidence 4567899999 88888874 2 233334555666778776
No 105
>COG5547 Small integral membrane protein [Function unknown]
Probab=39.05 E-value=41 Score=21.16 Aligned_cols=13 Identities=23% Similarity=0.209 Sum_probs=8.7
Q ss_pred HHHHhHHHHHHHH
Q 027612 188 WLQNMKIKLIVLG 200 (221)
Q Consensus 188 ~~~~~k~~iii~~ 200 (221)
|.+.+|+-++-++
T Consensus 3 flk~fkypIIggl 15 (62)
T COG5547 3 FLKKFKYPIIGGL 15 (62)
T ss_pred HHHHhccchHHHH
Confidence 6777777766544
No 106
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=39.00 E-value=1.1e+02 Score=21.62 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=11.3
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 027612 185 RKMWLQNMKIKLIVLGILI 203 (221)
Q Consensus 185 ~~~~~~~~k~~iii~~~v~ 203 (221)
++.-|++|...+++.+++.
T Consensus 38 kki~~KKyg~~~il~~l~~ 56 (104)
T PF12420_consen 38 KKIIFKKYGLIFILPFLVP 56 (104)
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 3456677776666655444
No 107
>COG4499 Predicted membrane protein [Function unknown]
Probab=38.27 E-value=59 Score=28.78 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=16.9
Q ss_pred HHHHHHhccCCCC-CCeEEEEeCCeEEEEEE
Q 027612 30 SIAYQCLQKLPAS-NNKFTYNCDAHTFNYLV 59 (221)
Q Consensus 30 ~ia~~iL~ki~~~-~~k~~~~~~~~~f~~l~ 59 (221)
.+-..+|++.||. +...+...|.+.+||-+
T Consensus 39 ~~~~~lld~~~~f~~~eit~~~Ds~vIsy~i 69 (434)
T COG4499 39 ALLAELLDKSPPFIVAEITEDNDSFVISYPI 69 (434)
T ss_pred HHHHHHhccCCCccceeecccCceeEEEecC
Confidence 3556778886666 22333444566666643
No 108
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.78 E-value=2e+02 Score=24.17 Aligned_cols=15 Identities=7% Similarity=0.158 Sum_probs=7.6
Q ss_pred HHhhccHHHHHHHHH
Q 027612 175 DFRSTGTKMRRKMWL 189 (221)
Q Consensus 175 ~f~~~a~~l~~~~~~ 189 (221)
.-...+.+|++.+..
T Consensus 223 nveqg~~~L~kA~~y 237 (269)
T KOG0811|consen 223 NVEQGTENLRKAAKY 237 (269)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333445666655543
No 109
>PRK09697 protein secretion protein GspB; Provisional
Probab=37.65 E-value=27 Score=25.11 Aligned_cols=28 Identities=4% Similarity=0.178 Sum_probs=18.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhc
Q 027612 185 RKMWLQNMKIKLIVLGILIALILIIVLSVC 214 (221)
Q Consensus 185 ~~~~~~~~k~~iii~~~v~~~~~~i~~~~C 214 (221)
..||-++..-. |+.++++.++..|...|
T Consensus 17 ~~~~~~~~~~T--I~~Vi~L~~~~L~~AG~ 44 (139)
T PRK09697 17 PGIFSRQKHST--IIYVICLLLICLWFAGM 44 (139)
T ss_pred cchhhhhhccc--hHHHHHHHHHHHHHhcc
Confidence 45676555433 45577778888887777
No 110
>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.06 E-value=2.1e+02 Score=22.53 Aligned_cols=54 Identities=13% Similarity=0.232 Sum_probs=37.6
Q ss_pred hccCCCCC---CeEEEEeCCeEEEEE-EeCCEEEEEEecCCCCcchHHHHHHHHHHHHHh
Q 027612 36 LQKLPASN---NKFTYNCDAHTFNYL-VDNGYTYCVVADESSGRQIPMAFLERVKDEFVS 91 (221)
Q Consensus 36 L~ki~~~~---~k~~~~~~~~~f~~l-~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~ 91 (221)
..++.|.+ .....+.+.+..|.. .-.|+-|++++++..+ .|=.+|+.+...|..
T Consensus 111 ~~qlsp~~ksSGie~LetdtF~l~~~QTlTG~KFVvis~~~~~--~aD~lLrKiYelYsD 168 (199)
T KOG3369|consen 111 STQLSPEPKSSGIEVLETDTFTLHIFQTLTGTKFVVIAEPGTQ--GADSLLRKIYELYSD 168 (199)
T ss_pred eeccCCCCCCCceEEEEeccEEEEEEEccCCcEEEEEecCCch--hHHHHHHHHHHHHHH
Confidence 34444442 345667788887754 4589999999998874 566678888777654
No 111
>PF14992 TMCO5: TMCO5 family
Probab=36.83 E-value=2.6e+02 Score=23.65 Aligned_cols=17 Identities=12% Similarity=0.476 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhHHHHH
Q 027612 181 TKMRRKMWLQNMKIKLI 197 (221)
Q Consensus 181 ~~l~~~~~~~~~k~~ii 197 (221)
++-++..|.|..++++.
T Consensus 207 ~~~~~~~wkr~lr~l~f 223 (280)
T PF14992_consen 207 KKNSPTFWKRALRLLFF 223 (280)
T ss_pred HhhhhHHHHHHHHHHHH
Confidence 34446778888887543
No 112
>PHA02557 22 prohead core protein; Provisional
Probab=35.81 E-value=84 Score=26.29 Aligned_cols=94 Identities=20% Similarity=0.273 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCccchhhHHHHHHh-hhhcCCch-hhhHHHHHHHhhhhhhhhhhhcHHHHHHh
Q 027612 78 PMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELM-QYCVDHPE-EISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (221)
Q Consensus 78 af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~-~~~~~~~~-~~dkl~~i~~~l~~v~~im~~ni~~~l~R 155 (221)
+-.||+.+-++|...... ..+......+..+|-.-|+++. .++-.-|. ..|.+..+..+|++...-...-++...++
T Consensus 89 vd~~l~~~~~eW~~ENk~-Av~~~IKaem~Es~l~GLK~lF~Ehnv~vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l 167 (271)
T PHA02557 89 ADKYLDHLAKEWLAENKL-AVDRGIKAELFESFLGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFEENVAL 167 (271)
T ss_pred HHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556999999999776421 1122222233344545566665 44334454 34788899999998888877777777777
Q ss_pred hhhhHhh------HHhhhhHHHh
Q 027612 156 GEKIELL------VDKTENLHQQ 172 (221)
Q Consensus 156 ge~l~~l------~~ks~~L~~~ 172 (221)
.+.++.+ .+.|.+|.+.
T Consensus 168 ~e~i~~~~r~~i~~e~t~gLtds 190 (271)
T PHA02557 168 EEYINEVKREVILSEVTKDLTES 190 (271)
T ss_pred HHHHHHHHHHHHHHHHHcchhHH
Confidence 6666543 3445555533
No 113
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=35.75 E-value=1.8e+02 Score=21.36 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=24.6
Q ss_pred hhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHH
Q 027612 143 GVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRK 186 (221)
Q Consensus 143 ~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~ 186 (221)
....+|.+.++..-..++.++.-.+.+...-.....+..+++..
T Consensus 51 ~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~e 94 (132)
T PF10392_consen 51 SQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSE 94 (132)
T ss_pred HHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666655555555555555555555433
No 114
>PF11675 DUF3271: Protein of unknown function (DUF3271); InterPro: IPR021689 This family of proteins with unknown function appears to be restricted to Plasmodium.
Probab=35.55 E-value=1.4e+02 Score=24.50 Aligned_cols=56 Identities=14% Similarity=0.301 Sum_probs=38.0
Q ss_pred CCCceEEEEEEeCCeeEEeecCCCCCHHHHHHHHhccCCCCCCeEEEEeCCeEEEEEEe
Q 027612 2 SQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60 (221)
Q Consensus 2 ~~~~i~Ya~Iar~~~iLae~~~~~~~~~~ia~~iL~ki~~~~~k~~~~~~~~~f~~l~~ 60 (221)
.|++|-|..|+.-+..+.........+-.++..+|..-+.+ .+..++.++ ||.+..
T Consensus 27 ~pk~i~y~sv~qpt~~f~~~~k~h~~YLdiIN~il~~eSeN-~Kyayeg~n--YHwvIT 82 (249)
T PF11675_consen 27 NPKPIAYISVAQPTATFEHDEKKHTKYLDIINDILRDESEN-IKYAYEGGN--YHWVIT 82 (249)
T ss_pred CCCceeEEeccCceEEEeecCccchhHHHHHHHHHhccccc-cceeeeCCc--eEEEEE
Confidence 36789999999876666655555566777888888776665 466666555 454443
No 115
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=35.39 E-value=43 Score=23.40 Aligned_cols=17 Identities=41% Similarity=0.399 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027612 193 KIKLIVLGILIALILII 209 (221)
Q Consensus 193 k~~iii~~~v~~~~~~i 209 (221)
|..++|+++++++|+|.
T Consensus 4 K~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLIS 20 (95)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44555555544444443
No 116
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=34.98 E-value=1.1e+02 Score=20.79 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=13.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 027612 184 RRKMWLQNMKIKLIVLGILIA 204 (221)
Q Consensus 184 ~~~~~~~~~k~~iii~~~v~~ 204 (221)
++..|.+|.+++.++.++=.+
T Consensus 3 ~~~yWr~n~rl~~~lL~iW~v 23 (81)
T PF13937_consen 3 ARAYWRKNLRLIAILLAIWFV 23 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 456788888877665543333
No 117
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=34.70 E-value=2.6e+02 Score=22.91 Aligned_cols=21 Identities=14% Similarity=0.428 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhhhccCC
Q 027612 197 IVLGILIALILIIVLSVCHGF 217 (221)
Q Consensus 197 ii~~~v~~~~~~i~~~~C~gf 217 (221)
+.+.++++++|+.+..+-++|
T Consensus 154 i~aml~Vf~LF~lvmt~g~d~ 174 (230)
T PF03904_consen 154 IGAMLFVFMLFALVMTIGSDF 174 (230)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 333444444555544444443
No 118
>PHA02975 hypothetical protein; Provisional
Probab=34.66 E-value=53 Score=21.40 Aligned_cols=6 Identities=17% Similarity=0.130 Sum_probs=2.1
Q ss_pred HHHHHH
Q 027612 198 VLGILI 203 (221)
Q Consensus 198 i~~~v~ 203 (221)
++.+++
T Consensus 51 i~~v~~ 56 (69)
T PHA02975 51 IIFITC 56 (69)
T ss_pred HHHHHH
Confidence 333333
No 119
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=34.56 E-value=32 Score=27.71 Aligned_cols=18 Identities=28% Similarity=0.602 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 027612 192 MKIKLIVLGILIALILII 209 (221)
Q Consensus 192 ~k~~iii~~~v~~~~~~i 209 (221)
.|+-++|.+||+.++|+|
T Consensus 126 ~K~amLIClIIIAVLfLI 143 (227)
T PF05399_consen 126 NKMAMLICLIIIAVLFLI 143 (227)
T ss_pred cchhHHHHHHHHHHHHHH
Confidence 455555554444444443
No 120
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=34.24 E-value=23 Score=24.74 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=8.0
Q ss_pred HHHHHHHhhhccC
Q 027612 204 ALILIIVLSVCHG 216 (221)
Q Consensus 204 ~~~~~i~~~~C~g 216 (221)
++.++.|+++|++
T Consensus 82 lv~~l~w~f~~r~ 94 (96)
T PTZ00382 82 LVGFLCWWFVCRG 94 (96)
T ss_pred HHHHHhheeEEee
Confidence 3446667777753
No 121
>PHA03164 hypothetical protein; Provisional
Probab=33.96 E-value=56 Score=21.78 Aligned_cols=18 Identities=11% Similarity=0.237 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027612 194 IKLIVLGILIALILIIVL 211 (221)
Q Consensus 194 ~~iii~~~v~~~~~~i~~ 211 (221)
..++-++++..++++|++
T Consensus 60 FlvLtgLaIamILfiifv 77 (88)
T PHA03164 60 FLVLTGLAIAMILFIIFV 77 (88)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344444455555555543
No 122
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=33.37 E-value=55 Score=20.00 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=7.1
Q ss_pred HHHHHhHHHHH
Q 027612 187 MWLQNMKIKLI 197 (221)
Q Consensus 187 ~~~~~~k~~ii 197 (221)
.||+++|..++
T Consensus 2 e~~~~~~~~ii 12 (51)
T PF10031_consen 2 EFWKNHRGKII 12 (51)
T ss_pred hHHHHCcchHH
Confidence 47888875544
No 123
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=33.20 E-value=54 Score=24.07 Aligned_cols=11 Identities=27% Similarity=0.688 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 027612 196 LIVLGILIALI 206 (221)
Q Consensus 196 iii~~~v~~~~ 206 (221)
.|++++++.++
T Consensus 68 ~Ii~gv~aGvI 78 (122)
T PF01102_consen 68 GIIFGVMAGVI 78 (122)
T ss_dssp HHHHHHHHHHH
T ss_pred ehhHHHHHHHH
Confidence 33333333333
No 124
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=33.08 E-value=2.3e+02 Score=22.99 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=34.4
Q ss_pred hhhHHHHHHhhhhcCCchhhhHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhH
Q 027612 109 EFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL 169 (221)
Q Consensus 109 ~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L 169 (221)
+.+..++++|+.. .-.+.|.-..+++++.--+..+.. +.++++++.++++.++.+..
T Consensus 135 d~~~Ql~Rl~~Rd--~lse~dAe~Rl~sQmp~~~k~~~a--~~Vi~Nng~~~~l~~qv~~v 191 (225)
T KOG3220|consen 135 DEELQLERLVERD--ELSEEDAENRLQSQMPLEKKCELA--DVVIDNNGSLEDLYEQVEKV 191 (225)
T ss_pred CcHHHHHHHHHhc--cccHHHHHHHHHhcCCHHHHHHhh--heeecCCCChHHHHHHHHHH
Confidence 3566778888663 222336666667666555544433 34777888888777665543
No 125
>PHA03011 hypothetical protein; Provisional
Probab=32.31 E-value=1.8e+02 Score=20.55 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=35.4
Q ss_pred hHHHHHHhhhhcCCchhhhHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhh
Q 027612 111 GPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTEN 168 (221)
Q Consensus 111 ~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~ 168 (221)
...+.++.-+|| .-.|...-+..++.+...+..+|.|.+.--...+|.|.+.-.+
T Consensus 63 ~e~ldeL~~qYN---~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN 117 (120)
T PHA03011 63 IEILDELIAQYN---ELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIAN 117 (120)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhc
Confidence 345556665553 2236667777788888888888888777666666666554433
No 126
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=31.94 E-value=1.4e+02 Score=24.63 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=17.9
Q ss_pred HHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhh
Q 027612 133 KVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRS 178 (221)
Q Consensus 133 ~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~ 178 (221)
.+..+++..+.-...+..+.-......+.+..++.+|.........
T Consensus 56 ~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~ 101 (264)
T PF06008_consen 56 SLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQD 101 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444433333333333333333333344444444444433333
No 127
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=30.86 E-value=1.9e+02 Score=22.13 Aligned_cols=12 Identities=8% Similarity=0.371 Sum_probs=5.7
Q ss_pred cHHHHHHHHHHH
Q 027612 180 GTKMRRKMWLQN 191 (221)
Q Consensus 180 a~~l~~~~~~~~ 191 (221)
..+++.-.-|+.
T Consensus 82 gERl~allsWrd 93 (156)
T PF08372_consen 82 GERLQALLSWRD 93 (156)
T ss_pred HHHHHHhhccCC
Confidence 344444455543
No 128
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=30.48 E-value=24 Score=27.44 Aligned_cols=16 Identities=44% Similarity=0.955 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhhc
Q 027612 199 LGILIALILIIVLSVC 214 (221)
Q Consensus 199 ~~~v~~~~~~i~~~~C 214 (221)
++||+++++|+++.+|
T Consensus 82 vgvi~~Vi~Iv~~Iv~ 97 (179)
T PF13908_consen 82 VGVICGVIAIVVLIVC 97 (179)
T ss_pred eehhhHHHHHHHhHhh
Confidence 3344444444445555
No 129
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=30.42 E-value=1.6e+02 Score=19.29 Aligned_cols=29 Identities=17% Similarity=0.473 Sum_probs=15.1
Q ss_pred hhhHhhHHhhhhHHHhHHHHhhccHHHHHHH
Q 027612 157 EKIELLVDKTENLHQQAQDFRSTGTKMRRKM 187 (221)
Q Consensus 157 e~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 187 (221)
+|||.+++|.+.-. +.-|++-.+++-|..
T Consensus 22 kRLdeieekvef~~--~Ev~Qr~GkkiGRDI 50 (75)
T COG4064 22 KRLDEIEEKVEFVN--GEVYQRIGKKIGRDI 50 (75)
T ss_pred HHHHHHHHHHHhhH--HHHHHHHHHHhcchH
Confidence 45555665555433 344555555665543
No 130
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=30.34 E-value=93 Score=17.43 Aligned_cols=12 Identities=8% Similarity=-0.036 Sum_probs=4.8
Q ss_pred HHHHhHHHHHHH
Q 027612 188 WLQNMKIKLIVL 199 (221)
Q Consensus 188 ~~~~~k~~iii~ 199 (221)
|.+-.++..++.
T Consensus 4 ~~~~H~W~Gl~~ 15 (37)
T PF13706_consen 4 LRKLHRWLGLIL 15 (37)
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 131
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.13 E-value=3.5e+02 Score=24.06 Aligned_cols=16 Identities=6% Similarity=0.246 Sum_probs=8.0
Q ss_pred HHHHhhhhhHhhHHhh
Q 027612 151 KVLDRGEKIELLVDKT 166 (221)
Q Consensus 151 ~~l~Rge~l~~l~~ks 166 (221)
..-||+++|+..-++.
T Consensus 130 ~~gE~~G~L~~~l~~l 145 (397)
T COG1459 130 AAGERSGNLDEVLQRL 145 (397)
T ss_pred HHHHhcCCHHHHHHHH
Confidence 3445666665544333
No 132
>PF15339 Afaf: Acrosome formation-associated factor
Probab=29.96 E-value=80 Score=24.63 Aligned_cols=23 Identities=26% Similarity=0.647 Sum_probs=13.0
Q ss_pred HHHHHHHH-HHHHHHHHHHhhhcc
Q 027612 193 KIKLIVLG-ILIALILIIVLSVCH 215 (221)
Q Consensus 193 k~~iii~~-~v~~~~~~i~~~~C~ 215 (221)
|+.+++|+ +.-+++|++.+.+|.
T Consensus 129 KlkLmLGIsLmTl~lfv~Ll~~c~ 152 (200)
T PF15339_consen 129 KLKLMLGISLMTLFLFVILLAFCS 152 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443 334567777788884
No 133
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=29.50 E-value=1.1e+02 Score=25.39 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=17.4
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHH
Q 027612 180 GTKMRRKMWLQNMKIKLIVLGILIA 204 (221)
Q Consensus 180 a~~l~~~~~~~~~k~~iii~~~v~~ 204 (221)
+.+-+--.||..|.+++++++.+.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (249)
T PRK15348 209 ANKGKVVKWLMKYPYQLMLSLTGLL 233 (249)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444556899999988887765433
No 134
>KOG4827 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.38 E-value=36 Score=27.16 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=14.8
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 027612 185 RKMWLQNMKIKLIVLGILIA 204 (221)
Q Consensus 185 ~~~~~~~~k~~iii~~~v~~ 204 (221)
.+.+|.+||||+|-.++|++
T Consensus 238 eRSF~AKYWMYiiPlglVVl 257 (279)
T KOG4827|consen 238 ERSFLAKYWMYIIPLGLVVL 257 (279)
T ss_pred chhHHHHHHHhhccchhhhh
Confidence 45788999999987665443
No 135
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=29.36 E-value=79 Score=27.88 Aligned_cols=16 Identities=6% Similarity=-0.031 Sum_probs=9.1
Q ss_pred HHHHHHhHHHHHHHHH
Q 027612 186 KMWLQNMKIKLIVLGI 201 (221)
Q Consensus 186 ~~~~~~~k~~iii~~~ 201 (221)
..+|++.+++++++++
T Consensus 34 ~~L~r~k~~Il~~~~~ 49 (377)
T PRK10381 34 SVLWKAKKTIIAITFA 49 (377)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666555443
No 136
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=29.15 E-value=20 Score=23.15 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 027612 192 MKIKLIVLGILIALILIIVLS 212 (221)
Q Consensus 192 ~k~~iii~~~v~~~~~~i~~~ 212 (221)
..+..+|+++|+.+++.|++.
T Consensus 9 ~vlaavIaG~Vvgll~ailLI 29 (64)
T PF01034_consen 9 EVLAAVIAGGVVGLLFAILLI 29 (64)
T ss_dssp ---------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555444444433
No 137
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=28.98 E-value=86 Score=22.16 Aligned_cols=14 Identities=7% Similarity=0.304 Sum_probs=8.4
Q ss_pred HHHHHHhHHHHHHH
Q 027612 186 KMWLQNMKIKLIVL 199 (221)
Q Consensus 186 ~~~~~~~k~~iii~ 199 (221)
++.|+.+++.+++.
T Consensus 2 ~~~~~~~~~~ii~~ 15 (103)
T PRK14125 2 KLKESKIHVSIFFV 15 (103)
T ss_pred chHHHHHHHHHHHH
Confidence 35677777666443
No 138
>PLN03223 Polycystin cation channel protein; Provisional
Probab=28.91 E-value=97 Score=32.15 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=36.7
Q ss_pred hhHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHH
Q 027612 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQ 171 (221)
Q Consensus 128 ~dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~ 171 (221)
.|.+.+.++.+-+++..+.++=.++++|++++.++++|-.+|..
T Consensus 1580 ~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~~ 1623 (1634)
T PLN03223 1580 VDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLEN 1623 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 35677777888888888999999999999999999988777754
No 139
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=28.89 E-value=1e+02 Score=20.90 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=9.7
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 027612 191 NMKIKLIVLGILIALILIIV 210 (221)
Q Consensus 191 ~~k~~iii~~~v~~~~~~i~ 210 (221)
+.|-.+|+.++|++++.+|.
T Consensus 32 ~lKrlliivvVvVlvVvviv 51 (93)
T PF08999_consen 32 NLKRLLIIVVVVVLVVVVIV 51 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEeeehhHHHHH
Confidence 44544555444444444444
No 140
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=28.88 E-value=2.1e+02 Score=20.03 Aligned_cols=9 Identities=11% Similarity=0.398 Sum_probs=4.3
Q ss_pred HHhHHHHHH
Q 027612 190 QNMKIKLIV 198 (221)
Q Consensus 190 ~~~k~~iii 198 (221)
+.+|+|++-
T Consensus 70 r~~KmwilG 78 (98)
T PF11166_consen 70 RDIKMWILG 78 (98)
T ss_pred HHHHHHHHH
Confidence 344555543
No 141
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=28.87 E-value=19 Score=24.81 Aligned_cols=27 Identities=4% Similarity=-0.062 Sum_probs=18.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhcc
Q 027612 189 LQNMKIKLIVLGILIALILIIVLSVCH 215 (221)
Q Consensus 189 ~~~~k~~iii~~~v~~~~~~i~~~~C~ 215 (221)
|.++-..+|+.++.++++|+.|.++-+
T Consensus 34 ws~vv~v~i~~lvaVg~~YL~y~~fLk 60 (91)
T PF01708_consen 34 WSRVVEVAIFTLVAVGCLYLAYTWFLK 60 (91)
T ss_pred ceeEeeeeehHHHHHHHHHHHHHHHHH
Confidence 566666666666667778888776543
No 142
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=28.68 E-value=67 Score=22.62 Aligned_cols=29 Identities=14% Similarity=0.129 Sum_probs=17.5
Q ss_pred HHhhccHHHHHHHHHHHhHHHHHHHHHHH
Q 027612 175 DFRSTGTKMRRKMWLQNMKIKLIVLGILI 203 (221)
Q Consensus 175 ~f~~~a~~l~~~~~~~~~k~~iii~~~v~ 203 (221)
+|-..+-.....-.|||+-+.+...++.+
T Consensus 35 ~YL~~~y~y~~sh~WRN~GIli~f~i~f~ 63 (103)
T PF06422_consen 35 DYLEESYGYSYSHRWRNFGILIAFWIFFI 63 (103)
T ss_pred HHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 35554555556678899886665544333
No 143
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=28.68 E-value=1.1e+02 Score=21.57 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=10.7
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q 027612 187 MWLQNMKIKLIVLGILIAL 205 (221)
Q Consensus 187 ~~~~~~k~~iii~~~v~~~ 205 (221)
=...|+.+-+++++++..+
T Consensus 74 G~~tn~fyGf~igL~i~~l 92 (97)
T PF05440_consen 74 GIFTNMFYGFIIGLVIAGL 92 (97)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 3455666666666655433
No 144
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=28.62 E-value=5.7e+02 Score=25.08 Aligned_cols=6 Identities=0% Similarity=0.190 Sum_probs=2.1
Q ss_pred HHHHHh
Q 027612 187 MWLQNM 192 (221)
Q Consensus 187 ~~~~~~ 192 (221)
..+..+
T Consensus 326 ~~~~~~ 331 (968)
T TIGR02956 326 LSVAQF 331 (968)
T ss_pred HHHHHH
Confidence 333333
No 145
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=28.51 E-value=1.1e+02 Score=19.42 Aligned_cols=12 Identities=17% Similarity=0.520 Sum_probs=7.9
Q ss_pred HHHHHhHHHHHH
Q 027612 187 MWLQNMKIKLIV 198 (221)
Q Consensus 187 ~~~~~~k~~iii 198 (221)
.|...|++++++
T Consensus 2 ~WladYWWiiLl 13 (63)
T PF13980_consen 2 HWLADYWWIILL 13 (63)
T ss_pred cHHHHHHHHHHH
Confidence 477788777444
No 146
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=28.37 E-value=3.1e+02 Score=25.14 Aligned_cols=13 Identities=31% Similarity=0.396 Sum_probs=5.2
Q ss_pred HHHHhhhhhhhhh
Q 027612 133 KVKAQVSEVKGVM 145 (221)
Q Consensus 133 ~i~~~l~~v~~im 145 (221)
-++.++.++++-|
T Consensus 131 ti~~qv~~~~~~l 143 (526)
T KOG4433|consen 131 TIDAQVSDTAEGL 143 (526)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 147
>PF10039 DUF2275: Predicted integral membrane protein (DUF2275); InterPro: IPR018734 This domain, found in various hypothetical bacterial proteins and in the RNA polymerase sigma factor, has no known function.
Probab=28.30 E-value=97 Score=25.18 Aligned_cols=30 Identities=10% Similarity=0.157 Sum_probs=13.0
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027612 180 GTKMRRKMWLQNMKIKLIVLGILIALILIIV 210 (221)
Q Consensus 180 a~~l~~~~~~~~~k~~iii~~~v~~~~~~i~ 210 (221)
.++.=.++|.+.+|.+.++++ +++++...+
T Consensus 22 ~~~~~~~~~~k~~r~~Al~al-il~i~as~~ 51 (218)
T PF10039_consen 22 NKKGVFRMWRKYKRAIALAAL-ILFILASLG 51 (218)
T ss_pred ccccHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 344333455454455544443 333343333
No 148
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=28.28 E-value=2.4e+02 Score=20.65 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhHHHHH
Q 027612 181 TKMRRKMWLQNMKIKLI 197 (221)
Q Consensus 181 ~~l~~~~~~~~~k~~ii 197 (221)
+.++|++++=+.-+...
T Consensus 53 ~~L~rR~~li~~ai~~~ 69 (130)
T PF11026_consen 53 RILRRRARLIRRAITLA 69 (130)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555444443333
No 149
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.27 E-value=1.6e+02 Score=26.00 Aligned_cols=37 Identities=22% Similarity=0.448 Sum_probs=30.8
Q ss_pred EEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhcC
Q 027612 58 LVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (221)
Q Consensus 58 l~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~ 94 (221)
...+++.+++++.-+.|.=.++.||++|.+-|.+-++
T Consensus 60 v~~~~i~~~~~st~e~pPL~~iefL~rv~dv~~eyFg 96 (418)
T KOG2740|consen 60 VYRDLIFFCAVSTVETPPLMVIEFLHRVVDVLLEYFG 96 (418)
T ss_pred eeccCcEEEEEEeccCCChhHHHHHHHHHHHHHHHhc
Confidence 4467777888888888888999999999999888774
No 150
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=28.22 E-value=1.1e+02 Score=16.65 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=6.8
Q ss_pred HHHHHHHhHHHHHHH
Q 027612 185 RKMWLQNMKIKLIVL 199 (221)
Q Consensus 185 ~~~~~~~~k~~iii~ 199 (221)
|+.|++-.++..+++
T Consensus 2 r~~~~~~H~~~g~~~ 16 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIA 16 (34)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344544455444443
No 151
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=27.93 E-value=1.6e+02 Score=23.26 Aligned_cols=79 Identities=15% Similarity=0.254 Sum_probs=40.9
Q ss_pred ecCCCCcchHHHHHHHHHHHHHhhcCCCCCCCCCCCCccchhhHHHHHHhhhhcCCchhhhHHHHHHHhhhhhhhhhhhc
Q 027612 69 ADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMEN 148 (221)
Q Consensus 69 ~d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~v~~im~~n 148 (221)
++-+|.+..--..|.|.++...+...+. .++ +=...|+.....| .+|+=.+.+-.-+.+..+.-.-+.+.
T Consensus 107 V~fTfD~~~L~~~L~ec~~~L~~lv~~H----LT~-----KS~~Ri~~vF~~f-~~~efL~~lf~~~~~~~~~L~~i~~~ 176 (186)
T PF05527_consen 107 VDFTFDRNYLSKLLKECRDLLHQLVEPH----LTP-----KSHGRIDHVFNFF-SDPEFLDALFSPDEEYRDHLGKICDG 176 (186)
T ss_dssp TTS---HHHHHHHHHHHHHHHHHHHTTT----S-H-----HHHHHHHHHHHHH-T-HHHHHHHTSG--GGHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHh----CCh-----hhHHHHHHHHHhh-CChHHHHHHhCcccchHHHHHHHHHH
Confidence 3445555556666777776666554211 111 1124555666666 45543344433345566666677788
Q ss_pred HHHHHHhhh
Q 027612 149 IEKVLDRGE 157 (221)
Q Consensus 149 i~~~l~Rge 157 (221)
+++++++|.
T Consensus 177 Lnklld~g~ 185 (186)
T PF05527_consen 177 LNKLLDEGS 185 (186)
T ss_dssp HHHHHHTT-
T ss_pred HHHHHhCCC
Confidence 899999884
No 152
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.92 E-value=3.3e+02 Score=22.09 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=37.2
Q ss_pred HHHHHHHhhhhhhhhhhhcHHHHHHhh--------hhhHhhHHh---hhhHHHhHHHHhhccHHHHHHHHHHHhHHHHHH
Q 027612 130 KLAKVKAQVSEVKGVMMENIEKVLDRG--------EKIELLVDK---TENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIV 198 (221)
Q Consensus 130 kl~~i~~~l~~v~~im~~ni~~~l~Rg--------e~l~~l~~k---s~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii 198 (221)
-+.++++.-.+++. .+|+.++.+-- ++|+++-.+ .+.|+..+..+...|++-+...-.=|.+..+.-
T Consensus 119 ~IQk~Kk~ynd~r~--~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~ 196 (216)
T KOG0862|consen 119 FIQKTKKRYNDTRS--QRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRK 196 (216)
T ss_pred HHHHHHHHhcCcHH--HHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHH
Confidence 35777777777754 44544443222 234444433 344556677777777666665555555544443
No 153
>PHA01811 hypothetical protein
Probab=27.87 E-value=75 Score=20.38 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=14.7
Q ss_pred CeEEEEeCCeEEEEEEeC
Q 027612 44 NKFTYNCDAHTFNYLVDN 61 (221)
Q Consensus 44 ~k~~~~~~~~~f~~l~~~ 61 (221)
...+....||.+||+-++
T Consensus 5 divtlrvkgyi~hyldd~ 22 (78)
T PHA01811 5 DIVTLRVKGYILHYLDDD 22 (78)
T ss_pred cEEEEEEeeEEEEEEcCc
Confidence 356788899999999764
No 154
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=27.39 E-value=2e+02 Score=20.86 Aligned_cols=13 Identities=0% Similarity=-0.053 Sum_probs=9.0
Q ss_pred HHHHHHHhHHHHH
Q 027612 185 RKMWLQNMKIKLI 197 (221)
Q Consensus 185 ~~~~~~~~k~~ii 197 (221)
++.++++|.++.+
T Consensus 65 ~~~~i~kyg~~GL 77 (121)
T PF06695_consen 65 KSKKIEKYGFWGL 77 (121)
T ss_pred HHHHHHHHhHHHH
Confidence 6678888875544
No 155
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=27.37 E-value=1.7e+02 Score=22.45 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q 027612 184 RRKMWLQNM 192 (221)
Q Consensus 184 ~~~~~~~~~ 192 (221)
|.|+..|-.
T Consensus 24 r~k~~~R~i 32 (161)
T PHA02673 24 RQKAIRRYI 32 (161)
T ss_pred HHHHHHHHH
Confidence 333443333
No 156
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=27.25 E-value=2.4e+02 Score=20.26 Aligned_cols=47 Identities=15% Similarity=0.338 Sum_probs=20.6
Q ss_pred HHHHHHHhhhhhhhhhhhcHHHHHHh----hhhhHhhHHhhhhHHHhHHHH
Q 027612 130 KLAKVKAQVSEVKGVMMENIEKVLDR----GEKIELLVDKTENLHQQAQDF 176 (221)
Q Consensus 130 kl~~i~~~l~~v~~im~~ni~~~l~R----ge~l~~l~~ks~~L~~~s~~f 176 (221)
++..++++++++++=|++.-++.-.. ..++|.|+++...|......+
T Consensus 9 q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~l 59 (112)
T PF07439_consen 9 QLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTL 59 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444444333211 234455555555544433333
No 157
>COG3685 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.85 E-value=2.7e+02 Score=21.58 Aligned_cols=22 Identities=32% Similarity=0.693 Sum_probs=11.2
Q ss_pred HHHHhhhhhhhhhhhcHHHHHHh
Q 027612 133 KVKAQVSEVKGVMMENIEKVLDR 155 (221)
Q Consensus 133 ~i~~~l~~v~~im~~ni~~~l~R 155 (221)
.+++.++||++-. ++++++++|
T Consensus 43 ~~E~Hl~ET~~qi-~rLe~Vfe~ 64 (167)
T COG3685 43 AIEKHLEETKGQI-ERLEQVFER 64 (167)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHH
Confidence 4455555555443 355555555
No 158
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=26.84 E-value=69 Score=24.31 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=6.0
Q ss_pred HhHHHHHHHHHHH
Q 027612 191 NMKIKLIVLGILI 203 (221)
Q Consensus 191 ~~k~~iii~~~v~ 203 (221)
+.|+++.+.+.++
T Consensus 118 ~nklilaisvtvv 130 (154)
T PF14914_consen 118 NNKLILAISVTVV 130 (154)
T ss_pred cchhHHHHHHHHH
Confidence 3455555444333
No 159
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.75 E-value=52 Score=22.36 Aligned_cols=24 Identities=13% Similarity=0.336 Sum_probs=14.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 027612 183 MRRKMWLQNMKIKLIVLGILIALI 206 (221)
Q Consensus 183 l~~~~~~~~~k~~iii~~~v~~~~ 206 (221)
.+++...||...|+.++..+++++
T Consensus 2 INwKvR~kN~~~w~ali~~i~l~v 25 (84)
T PF04531_consen 2 INWKVRFKNKAFWVALISAILLLV 25 (84)
T ss_pred CchhhcccCHHHHHHHHHHHHHHH
Confidence 345666677777766655444433
No 160
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=26.51 E-value=90 Score=26.82 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=15.6
Q ss_pred hHHHHHHHhhhhhhhhhh
Q 027612 129 SKLAKVKAQVSEVKGVMM 146 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~ 146 (221)
+.+.+++.+++.++.+|.
T Consensus 230 ~eL~~iqaqL~tvks~m~ 247 (372)
T COG3524 230 DELIVIQAQLDTVKSVMN 247 (372)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 678888999999999993
No 161
>PHA03386 P10 fibrous body protein; Provisional
Probab=26.27 E-value=1.4e+02 Score=20.75 Aligned_cols=15 Identities=13% Similarity=0.368 Sum_probs=10.5
Q ss_pred hHHHHHHHhhhhhhh
Q 027612 129 SKLAKVKAQVSEVKG 143 (221)
Q Consensus 129 dkl~~i~~~l~~v~~ 143 (221)
+|+..+|.++++++.
T Consensus 19 ~KVdaLQ~qV~dv~~ 33 (94)
T PHA03386 19 TKVDALQTQLNGLEE 33 (94)
T ss_pred hHHHHHHHHHHHHHh
Confidence 677777777777663
No 162
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=26.24 E-value=1.7e+02 Score=19.92 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 027612 199 LGILIALILIIV 210 (221)
Q Consensus 199 ~~~v~~~~~~i~ 210 (221)
+++++..++++|
T Consensus 21 ~~v~~~a~~~v~ 32 (97)
T PF04999_consen 21 IVVLISALGVVY 32 (97)
T ss_pred HHHHHHHHHHHH
Confidence 333333344444
No 163
>PRK13739 conjugal transfer protein TraP; Provisional
Probab=26.13 E-value=3.2e+02 Score=21.61 Aligned_cols=45 Identities=7% Similarity=0.178 Sum_probs=30.6
Q ss_pred hhhhHHHhHHHHhhccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027612 165 KTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIV 210 (221)
Q Consensus 165 ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~~v~~~~~~i~ 210 (221)
.+.++...+-.+ .-+.=||+-.|.=+|-++.=++-..++++++.|
T Consensus 5 ~~~~~~~~all~-~va~~LRWL~W~vkyaVIwPlATmaLlv~lvlw 49 (198)
T PRK13739 5 MSSRQACHALLY-VVARVLRWLFWCVKYAVIWPLATMALMVLFVLW 49 (198)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555544 336789999998888766666766667777777
No 164
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=26.08 E-value=93 Score=18.64 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=12.2
Q ss_pred HhHHHHHH-HHHHHHHHHHHHh-hhc
Q 027612 191 NMKIKLIV-LGILIALILIIVL-SVC 214 (221)
Q Consensus 191 ~~k~~iii-~~~v~~~~~~i~~-~~C 214 (221)
++++++++ .+++|++++...+ +-|
T Consensus 3 k~rwiili~iv~~Cl~lyl~ald~~C 28 (47)
T PRK10299 3 KFRWVVLVVVVLACLLLWAQVFNMMC 28 (47)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHHh
Confidence 45555444 3455555555544 456
No 165
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=25.99 E-value=59 Score=26.24 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=12.3
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 027612 191 NMKIKLIVLGILIALILIIV 210 (221)
Q Consensus 191 ~~k~~iii~~~v~~~~~~i~ 210 (221)
..++|.+++++++++++++.
T Consensus 176 ~~~~W~i~~~~~i~~i~~i~ 195 (215)
T PHA02947 176 SNKPWFIVGVVIILIIFVIA 195 (215)
T ss_pred CCCchHHHHHHHHHHHHHHH
Confidence 35567777666666665553
No 166
>KOG3658 consensus Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases [Extracellular structures]
Probab=25.97 E-value=84 Score=29.93 Aligned_cols=28 Identities=14% Similarity=0.604 Sum_probs=21.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhc
Q 027612 187 MWLQNMKIKLIVLGILIALILIIVLSVC 214 (221)
Q Consensus 187 ~~~~~~k~~iii~~~v~~~~~~i~~~~C 214 (221)
.|...-||...|.+++++++.++|+.+|
T Consensus 677 ~w~~~~w~~v~i~gi~~i~~m~~fik~~ 704 (764)
T KOG3658|consen 677 EWIVLNWLAVNIVGIVLIVLMAFFIKIC 704 (764)
T ss_pred HHHHhhhHHhHhHHHHHHHHHHHhhhhe
Confidence 4666666666777778888888888888
No 167
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.90 E-value=2e+02 Score=18.89 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=23.4
Q ss_pred hhHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHh
Q 027612 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 172 (221)
Q Consensus 128 ~dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~ 172 (221)
.|.+.-+|-++++.|+.-..=-+.+-+-.+..+.|+...+.|+..
T Consensus 17 vdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777788888877653211122222333444555555555544
No 168
>PF13163 DUF3999: Protein of unknown function (DUF3999)
Probab=25.55 E-value=61 Score=29.13 Aligned_cols=22 Identities=5% Similarity=-0.268 Sum_probs=17.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q 027612 189 LQNMKIKLIVLGILIALILIIV 210 (221)
Q Consensus 189 ~~~~k~~iii~~~v~~~~~~i~ 210 (221)
|+++.+|.+++++|+++.++.|
T Consensus 406 ~~~~~LW~~Lv~gV~vL~~mA~ 427 (429)
T PF13163_consen 406 WKRWLLWGALVLGVAVLGGMAW 427 (429)
T ss_pred hhhhHHHHHHHHHHHHHHHHhe
Confidence 8888999988887777776665
No 169
>PF09574 DUF2374: Protein of unknown function (Duf2374); InterPro: IPR014175 This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC 7966.
Probab=25.21 E-value=1e+02 Score=17.95 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 027612 194 IKLIVLGILIALILIIVLS 212 (221)
Q Consensus 194 ~~iii~~~v~~~~~~i~~~ 212 (221)
+.|++++++.+.++-+|+.
T Consensus 18 PvI~L~GF~~Vav~~~~lL 36 (42)
T PF09574_consen 18 PVIILSGFAAVAVASIWLL 36 (42)
T ss_pred hHHHHhhHHHHHHHHHHHH
Confidence 5667777777666666653
No 170
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=25.06 E-value=69 Score=20.63 Aligned_cols=7 Identities=14% Similarity=0.140 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 027612 195 KLIVLGI 201 (221)
Q Consensus 195 ~iii~~~ 201 (221)
|+++.++
T Consensus 2 WIiiSIv 8 (66)
T PF07438_consen 2 WIIISIV 8 (66)
T ss_pred hhhHHHH
Confidence 4554443
No 171
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=24.96 E-value=1.3e+02 Score=16.73 Aligned_cols=12 Identities=42% Similarity=0.659 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhh
Q 027612 201 ILIALILIIVLS 212 (221)
Q Consensus 201 ~v~~~~~~i~~~ 212 (221)
++.+++++.|..
T Consensus 14 iLt~~ILvFWfg 25 (34)
T PF08113_consen 14 ILTAFILVFWFG 25 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333445555543
No 172
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=24.84 E-value=1.2e+02 Score=20.71 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=19.9
Q ss_pred hhHhhHHhhhhHHHhHHHHhhccHHHHHHH
Q 027612 158 KIELLVDKTENLHQQAQDFRSTGTKMRRKM 187 (221)
Q Consensus 158 ~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 187 (221)
.|+.|++|.+.|...-..+-...++.|+.+
T Consensus 41 ~LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 41 CLDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777766666666543
No 173
>PRK00807 50S ribosomal protein L24e; Validated
Probab=24.71 E-value=1.1e+02 Score=18.80 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=17.0
Q ss_pred cCCCCCCeEEEEeCCeEEEEEE
Q 027612 38 KLPASNNKFTYNCDAHTFNYLV 59 (221)
Q Consensus 38 ki~~~~~k~~~~~~~~~f~~l~ 59 (221)
++.|++.+..+..|+..|+|+.
T Consensus 10 ~I~pg~G~~~vr~Dgkv~~Fcs 31 (52)
T PRK00807 10 EIEPGTGKMYVKKDGTILYFCS 31 (52)
T ss_pred eEcCCCCeEEEEeCCcEEEEeC
Confidence 4667777777888888888876
No 174
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=24.65 E-value=2.8e+02 Score=21.66 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=23.7
Q ss_pred HHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhh
Q 027612 131 LAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRS 178 (221)
Q Consensus 131 l~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~ 178 (221)
++..++++++--.-+.+.|+.+=+-..+...|.+|+..|...-..|.+
T Consensus 118 Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 118 VDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444333334444444444445555666666666655555543
No 175
>PRK12430 putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
Probab=24.54 E-value=1.2e+02 Score=26.64 Aligned_cols=39 Identities=18% Similarity=0.379 Sum_probs=24.8
Q ss_pred hHhhHHhhhhHHHhHHHHhhccHHHHHHHHHHHhHHHHH
Q 027612 159 IELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLI 197 (221)
Q Consensus 159 l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~ii 197 (221)
.|+..+|+.+---.++.|..+-+.-+|-+|-|.+++-++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (379)
T PRK12430 103 KDEVIKKTNDTLLQKNNFNRSLKNFSKTSWKKTMFYRII 141 (379)
T ss_pred hhHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHH
Confidence 444455555544455667666677777788777777665
No 176
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=24.35 E-value=3.6e+02 Score=25.24 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=43.1
Q ss_pred hhhHHHHHHhhhhc----CCchhhhHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHH
Q 027612 109 EFGPKLKELMQYCV----DHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDF 176 (221)
Q Consensus 109 ~f~~~l~~~~~~~~----~~~~~~dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f 176 (221)
++...+++.-.+|+ +-|. .+++...++++++++.-=.+|...+.++-+.++.|...........+.|
T Consensus 168 ~~~~~~k~~~~~w~~~~~~Lp~-~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~ 238 (555)
T TIGR03545 168 EIEKSLKAMQQKWKKRKKDLPN-KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSA 238 (555)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443 3343 4788899999998888655677788888888887776666554444433
No 177
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=24.33 E-value=1.3e+02 Score=19.89 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=13.3
Q ss_pred HHHHHhHHHHHHHHHHHHHH
Q 027612 187 MWLQNMKIKLIVLGILIALI 206 (221)
Q Consensus 187 ~~~~~~k~~iii~~~v~~~~ 206 (221)
.||+..|..++..+..+++-
T Consensus 2 ~~~~~ik~~~LF~~~T~lfY 21 (71)
T PF14004_consen 2 RWLDMIKFFLLFTGCTLLFY 21 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 57888888777665555433
No 178
>PHA02690 hypothetical protein; Provisional
Probab=24.31 E-value=2.3e+02 Score=19.07 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=21.4
Q ss_pred HhhccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027612 176 FRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIV 210 (221)
Q Consensus 176 f~~~a~~l~~~~~~~~~k~~iii~~~v~~~~~~i~ 210 (221)
.-..|+-+-|++|.=-+-+.+.+.++.++++=++|
T Consensus 30 hlEgs~plLR~~~RlLfDL~lTvfV~myiv~Rl~~ 64 (90)
T PHA02690 30 HLEGSTPLLRQMWRLLFDLLLTVFVVMYIVFRLIW 64 (90)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445577778886666666666655555555555
No 179
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=24.30 E-value=76 Score=23.46 Aligned_cols=23 Identities=4% Similarity=0.199 Sum_probs=19.2
Q ss_pred cCCCCCCeEEEEeCCeEEEEEEe
Q 027612 38 KLPASNNKFTYNCDAHTFNYLVD 60 (221)
Q Consensus 38 ki~~~~~k~~~~~~~~~f~~l~~ 60 (221)
+|.|++.+..+..++.+|+|+..
T Consensus 13 kIyPG~G~~fVR~DGkvf~Fcss 35 (131)
T PRK14891 13 EIEPGTGTMFVRKDGTVLHFVDS 35 (131)
T ss_pred cccCCCCcEEEecCCCEEEEecH
Confidence 67888888888889999998765
No 180
>PF03555 Flu_C_NS2: Influenza C non-structural protein (NS2); InterPro: IPR005188 The influenza C virus genome consists of seven single-stranded RNA segments. The shortest RNA segment encodes a 286 amino acid non-structural protein NS1 IPR005187 from INTERPRO as well as the NS2 protein. The NS2 protein is only about 60 amino acids in length and of unknown function.
Probab=24.08 E-value=1.2e+02 Score=18.13 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=20.8
Q ss_pred hhhhhcHHHHHHhhhhhHhhHH-hhhhHHHhHH
Q 027612 143 GVMMENIEKVLDRGEKIELLVD-KTENLHQQAQ 174 (221)
Q Consensus 143 ~im~~ni~~~l~Rge~l~~l~~-ks~~L~~~s~ 174 (221)
+.|.=--.++|+|+|.||.-.+ +.+.|....+
T Consensus 5 nlmafvatkmlerqedldtctemqvekmkastk 37 (57)
T PF03555_consen 5 NLMAFVATKMLERQEDLDTCTEMQVEKMKASTK 37 (57)
T ss_pred hHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhHH
Confidence 4454455789999999987544 4555555444
No 181
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=23.77 E-value=1.4e+02 Score=22.61 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=10.1
Q ss_pred HHHhhccHHHHHHHHHHHhHH
Q 027612 174 QDFRSTGTKMRRKMWLQNMKI 194 (221)
Q Consensus 174 ~~f~~~a~~l~~~~~~~~~k~ 194 (221)
...-....+++|.-+|+++++
T Consensus 79 ~~LV~k~sk~~r~n~~kk~~y 99 (147)
T PF05659_consen 79 KELVEKCSKVRRWNLYKKPRY 99 (147)
T ss_pred HHHHHHhccccHHHHHhhHhH
Confidence 333343445555555555543
No 182
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=23.53 E-value=1.2e+02 Score=26.11 Aligned_cols=15 Identities=7% Similarity=-0.099 Sum_probs=8.2
Q ss_pred HHHHHHhHHHHHHHH
Q 027612 186 KMWLQNMKIKLIVLG 200 (221)
Q Consensus 186 ~~~~~~~k~~iii~~ 200 (221)
...|++.|+++++++
T Consensus 25 ~~L~r~k~~Ii~~~~ 39 (325)
T PRK15471 25 VQLWRGKMTIIISVI 39 (325)
T ss_pred HHHHHhhHHHHHHHH
Confidence 356666665554443
No 183
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=23.52 E-value=4.2e+02 Score=25.68 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=12.5
Q ss_pred hhhhhhhhhcHHHHHHhhhhhHh
Q 027612 139 SEVKGVMMENIEKVLDRGEKIEL 161 (221)
Q Consensus 139 ~~v~~im~~ni~~~l~Rge~l~~ 161 (221)
.+..+.+.+.++.+.+|.+.|..
T Consensus 592 ~~~ae~LaeR~e~a~d~Qe~L~~ 614 (717)
T PF10168_consen 592 RESAEKLAERYEEAKDKQEKLMK 614 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334456666666666655443
No 184
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=23.18 E-value=1.5e+02 Score=19.70 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHhccCCC--CCCeEEEEeCC-eEEEEE--EeCCEEEEEEecCCC
Q 027612 25 SGNFNSIAYQCLQKLPA--SNNKFTYNCDA-HTFNYL--VDNGYTYCVVADESS 73 (221)
Q Consensus 25 ~~~~~~ia~~iL~ki~~--~~~k~~~~~~~-~~f~~l--~~~~~~~~~i~d~~~ 73 (221)
-.+|+.+...+-+++.+ ..-+..++.++ ....-+ .++|-.|+|...+.+
T Consensus 25 ~~sfd~lL~~lt~~l~l~~~~Vr~lyt~~g~~~v~~~~~l~~g~~yVa~g~e~f 78 (80)
T cd01617 25 FKSFDALLDDLTEKVQLDPGAVRKLYTLDGGHRVSLLDELEDGGVYVASGREPF 78 (80)
T ss_pred hCCHHHHHHHHHHHhCCCCCcEEEEEcCCCCeEeccHHHhcCCCEEEEECCCCC
Confidence 46899988888888774 55567788877 444433 257899999876654
No 185
>TIGR02808 short_TIGR02808 conserved hypothetical protein TIGR02808. This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC7966.
Probab=23.12 E-value=92 Score=18.06 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 027612 194 IKLIVLGILIALILIIVLS 212 (221)
Q Consensus 194 ~~iii~~~v~~~~~~i~~~ 212 (221)
+.|++++++.+...-||+.
T Consensus 18 PvIil~GF~~Va~~si~lL 36 (42)
T TIGR02808 18 PFIILSGFVAVAVTSILLL 36 (42)
T ss_pred chHHhhhhHHHHHHHHHHH
Confidence 5677777777766666653
No 186
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=23.11 E-value=1.1e+02 Score=20.65 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHhhh
Q 027612 199 LGILIALILIIVLSV 213 (221)
Q Consensus 199 ~~~v~~~~~~i~~~~ 213 (221)
.+..+++++++++.+
T Consensus 13 ~GM~~VF~fL~lLi~ 27 (82)
T TIGR01195 13 LGMGIVFLFLSLLIY 27 (82)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344444433
No 187
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=23.10 E-value=1e+02 Score=23.32 Aligned_cols=7 Identities=57% Similarity=0.880 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 027612 198 VLGILIA 204 (221)
Q Consensus 198 i~~~v~~ 204 (221)
|+++|++
T Consensus 125 i~g~ll~ 131 (145)
T PF10661_consen 125 IGGILLA 131 (145)
T ss_pred HHHHHHH
Confidence 3333333
No 188
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=22.92 E-value=3.6e+02 Score=20.82 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=8.2
Q ss_pred HHHHHhhhhhhhhhhhcHHHHH
Q 027612 132 AKVKAQVSEVKGVMMENIEKVL 153 (221)
Q Consensus 132 ~~i~~~l~~v~~im~~ni~~~l 153 (221)
.+..++..+..+-+.+.+.+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~e~l 187 (275)
T PF00664_consen 166 RKLSKKYQEANSELNSFLSESL 187 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccch
Confidence 3333333333333333333333
No 189
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=22.72 E-value=2.4e+02 Score=20.61 Aligned_cols=43 Identities=14% Similarity=0.304 Sum_probs=26.3
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHH
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQ 171 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~ 171 (221)
..+..++.++++...--.-.+..+-++.|.++.|...-.+|+.
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4455566666666665555566666666666666665555553
No 190
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=22.59 E-value=79 Score=29.52 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=17.5
Q ss_pred hhHHHHHHHhhhhhhhhhhhcH
Q 027612 128 ISKLAKVKAQVSEVKGVMMENI 149 (221)
Q Consensus 128 ~dkl~~i~~~l~~v~~im~~ni 149 (221)
.+.+..++++++.+.++..+|=
T Consensus 441 ~~~i~~l~~~~~sl~~~v~qnr 462 (561)
T PF00429_consen 441 EDSISALQEQLTSLAEVVLQNR 462 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCc
Confidence 3778888899988888877774
No 191
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=22.54 E-value=2.3e+02 Score=18.36 Aligned_cols=36 Identities=14% Similarity=0.067 Sum_probs=15.2
Q ss_pred HHHhhccHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027612 174 QDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILII 209 (221)
Q Consensus 174 ~~f~~~a~~l~~~~~~~~~k~~iii~~~v~~~~~~i 209 (221)
.+|-+-|+|=-|.-+-+-.|...+-.+++-++-|+|
T Consensus 19 ~rvl~~arKP~~eEy~~~aKi~~~Gi~liG~IGfiI 54 (65)
T COG2443 19 RRVLKVARKPDWEEYSKIAKITGLGILLIGIIGFII 54 (65)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444454444333333333433
No 192
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=22.41 E-value=1.1e+02 Score=20.95 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=15.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 027612 185 RKMWLQNMKIKLIVLGILIALILIIVL 211 (221)
Q Consensus 185 ~~~~~~~~k~~iii~~~v~~~~~~i~~ 211 (221)
.|.=|..+...+++++++ ++++||+
T Consensus 56 gK~~W~~fg~~~vVGvvL--lv~viwL 80 (87)
T PF11190_consen 56 GKKTWGDFGATVVVGVVL--LVFVIWL 80 (87)
T ss_pred CcccHHHhhhHHHHHHHH--HHHHHHH
Confidence 445567888777776543 4555664
No 193
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=22.40 E-value=4.3e+02 Score=23.08 Aligned_cols=16 Identities=19% Similarity=0.669 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 027612 196 LIVLGILIALILIIVL 211 (221)
Q Consensus 196 iii~~~v~~~~~~i~~ 211 (221)
++++++|+++++.+++
T Consensus 375 l~ig~~v~~i~~~~~l 390 (399)
T TIGR02120 375 VVMGGVVLFIVLAVLL 390 (399)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444433333
No 194
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=22.27 E-value=3.4e+02 Score=24.27 Aligned_cols=81 Identities=9% Similarity=0.178 Sum_probs=42.4
Q ss_pred hhHHHHHHHhhhhhhhhhh---hcH-HHHHHhhhhhHhhHHhhhhHHHh-----HHHHhhccH-HHHHHHHHHHhHHHHH
Q 027612 128 ISKLAKVKAQVSEVKGVMM---ENI-EKVLDRGEKIELLVDKTENLHQQ-----AQDFRSTGT-KMRRKMWLQNMKIKLI 197 (221)
Q Consensus 128 ~dkl~~i~~~l~~v~~im~---~ni-~~~l~Rge~l~~l~~ks~~L~~~-----s~~f~~~a~-~l~~~~~~~~~k~~ii 197 (221)
.+|+..+.+.++++.++.. +|. +.+++=|=.| .+..+.-. +..|-.+-. -+.... .-|+++.+
T Consensus 317 ~nk~~~Lre~IddTEd~InI~LDs~RN~LiqleL~L-----t~gT~~~s~~~~va~ifGMNl~~~l~~~~--~~F~~vv~ 389 (414)
T KOG2662|consen 317 LNKLESLREYIDDTEDIINIQLDSNRNELIQLELLL-----TIGTFCLSVFSVVAGIFGMNLPSSLEEDH--YAFKWVVG 389 (414)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccchhHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCccchhccCC--ChhhhhHH
Confidence 4678888888888876653 333 2222222111 12222222 233433210 111111 24577777
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 027612 198 VLGILIALILIIVLSVCH 215 (221)
Q Consensus 198 i~~~v~~~~~~i~~~~C~ 215 (221)
+.++.|+++|+++++.|+
T Consensus 390 ~~~~~~~~lf~~i~~~~k 407 (414)
T KOG2662|consen 390 ITFTLCIVLFVVILGYAK 407 (414)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788888888888887763
No 195
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.27 E-value=1.1e+02 Score=24.46 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=16.9
Q ss_pred HhhhhhhhhhhhcHHHHHHhhhh
Q 027612 136 AQVSEVKGVMMENIEKVLDRGEK 158 (221)
Q Consensus 136 ~~l~~v~~im~~ni~~~l~Rge~ 158 (221)
+.++-..+.|.++||..|+..+.
T Consensus 133 e~Mdm~~Emm~daIDdal~~~ed 155 (224)
T KOG3230|consen 133 EIMDMKEEMMDDAIDDALGDDED 155 (224)
T ss_pred HHHHHHHHHHHHHHHHhhcccch
Confidence 34567778899999999964433
No 196
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=22.25 E-value=5e+02 Score=22.18 Aligned_cols=48 Identities=15% Similarity=0.353 Sum_probs=23.2
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHH
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMR 184 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~ 184 (221)
.++..+..++++.+.++. ..+.+..|...++.+...+..|+.....+.
T Consensus 138 q~I~~L~k~le~~~k~~e--------~~~~~~el~aei~~lk~~~~e~~eki~~la 185 (294)
T COG1340 138 QKIKELRKELEDAKKALE--------ENEKLKELKAEIDELKKKAREIHEKIQELA 185 (294)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666665555443 334444444444444444444444443333
No 197
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=21.94 E-value=45 Score=25.40 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=14.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHh
Q 027612 187 MWLQNMKIKLIVLGILIALILIIVL 211 (221)
Q Consensus 187 ~~~~~~k~~iii~~~v~~~~~~i~~ 211 (221)
.-.|+-|+-=|++++++++..+|.+
T Consensus 125 ae~kr~K~Cki~~Li~~~vc~~ilV 149 (159)
T PF06789_consen 125 AELKRSKVCKIFALIVLAVCAVILV 149 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheEE
Confidence 3556777766666555544444443
No 198
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=21.94 E-value=7.5e+02 Score=24.12 Aligned_cols=6 Identities=67% Similarity=0.899 Sum_probs=2.3
Q ss_pred HHHHHH
Q 027612 205 LILIIV 210 (221)
Q Consensus 205 ~~~~i~ 210 (221)
+++++|
T Consensus 344 ~~~~~~ 349 (914)
T PRK11466 344 LILILW 349 (914)
T ss_pred HHHHHH
Confidence 333333
No 199
>PF03238 ESAG1: ESAG protein; InterPro: IPR004922 Trypanosoma brucei is the causative agent of sleeping sickness in humans and nagana in cattle. The parasite lives extracellularly in the blood and tissue fluids of the mammalian host, and is transmitted by the bite of infected tsetse. Each variant surface glycoprotein (Vsg) expression site (ES) in bloodstream-form T. brucei is a polycistronic transcription unit containing several distinct expression site-associated genes (esag), in addition to a single vsg gene. They are co-transcribed with the gene encoding the VSG protein, forming the surface coat of the parasite. ESAG1 genes from different ESs encode a highly polymorphic family of membrane-associated glycoproteins, whose function is unknown [].
Probab=21.88 E-value=2.3e+02 Score=22.96 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=39.3
Q ss_pred hcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHHHHHHHhHHHHHHHHH
Q 027612 147 ENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGI 201 (221)
Q Consensus 147 ~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~~ 201 (221)
+.++|++.-|..+-+|+.|...|=..-..--+.-|+.---..-+.-|+|..|+=|
T Consensus 7 dKLEKLISyGN~MGDLVaKvGGLFAeVNESVRaVRkeiP~ALikaNKYYTAiAEI 61 (231)
T PF03238_consen 7 DKLEKLISYGNEMGDLVAKVGGLFAEVNESVRAVRKEIPGALIKANKYYTAIAEI 61 (231)
T ss_pred hhHHHHHHcCcchhhHHHhccchhHHHHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999876655544433444344567777888777653
No 200
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=21.68 E-value=60 Score=22.60 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHH-----HHhhhcc--CCcc
Q 027612 192 MKIKLIVLGILIALILI-----IVLSVCH--GFNC 219 (221)
Q Consensus 192 ~k~~iii~~~v~~~~~~-----i~~~~C~--gf~C 219 (221)
.+++.+++++++++.-+ +|.++|| ||+|
T Consensus 34 ~W~~FL~~Gi~~~~~Sl~~~~~~~S~llgv~g~s~ 68 (94)
T PF14898_consen 34 IWPIFLLAGIACIIASLFVSNVIWSALLGVLGFSC 68 (94)
T ss_pred cHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 34444454444443222 3455665 5555
No 201
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=21.62 E-value=5.4e+02 Score=23.16 Aligned_cols=13 Identities=31% Similarity=0.182 Sum_probs=6.0
Q ss_pred HhhHHhhhhHHHh
Q 027612 160 ELLVDKTENLHQQ 172 (221)
Q Consensus 160 ~~l~~ks~~L~~~ 172 (221)
..++..++++.++
T Consensus 168 ~~~q~~~~n~~~~ 180 (418)
T cd07912 168 QGLQQMATNAAQQ 180 (418)
T ss_pred HHHHHHHHHHHHH
Confidence 3344455555443
No 202
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=21.41 E-value=5.6e+02 Score=22.42 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhcc-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 027612 134 VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTG-TKMRRKMWLQNMKIKLIVLGILIALILIIVLS 212 (221)
Q Consensus 134 i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a-~~l~~~~~~~~~k~~iii~~~v~~~~~~i~~~ 212 (221)
+.+-+.+.. ....-.-.++.-||.-..|. +.|..-|..+.+.. .++++..-+-.--+.++++++|.++++.+++.
T Consensus 315 ls~al~~~~-~fp~~~~~~i~~GE~sG~L~---~~L~~la~~~~~~~~~~~~~~~~ll~P~~il~ig~~v~~i~~~i~lP 390 (399)
T PRK10573 315 LWLALKNHP-LFPPLCLQLVRVGEESGSLD---LMLENLAHWHQEQTQALADNLAQLLEPLLMIITGGIVGTLVVAMYLP 390 (399)
T ss_pred HHHHHhhCC-CCcHHHHHHHHHHHhhccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q 027612 213 V 213 (221)
Q Consensus 213 ~ 213 (221)
+
T Consensus 391 ~ 391 (399)
T PRK10573 391 I 391 (399)
T ss_pred H
No 203
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=21.37 E-value=90 Score=26.68 Aligned_cols=6 Identities=33% Similarity=0.257 Sum_probs=3.8
Q ss_pred eeEEee
Q 027612 16 VVLAEY 21 (221)
Q Consensus 16 ~iLae~ 21 (221)
..|||.
T Consensus 19 R~LcEC 24 (299)
T PF02009_consen 19 RSLCEC 24 (299)
T ss_pred cchhhh
Confidence 567764
No 204
>PF10875 DUF2670: Protein of unknown function (DUF2670); InterPro: IPR022714 This bacterial family of proteins has no known function and appears to be restricted to Rickettsiaceae.
Probab=21.29 E-value=99 Score=22.61 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=19.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhh
Q 027612 187 MWLQNMKIKLIVLGILIALILIIVLS 212 (221)
Q Consensus 187 ~~~~~~k~~iii~~~v~~~~~~i~~~ 212 (221)
.|-=--||+++|+..-++++|++++.
T Consensus 18 lw~iItKWyL~IavaSlI~lyy~v~g 43 (139)
T PF10875_consen 18 LWSIITKWYLIIAVASLITLYYTVLG 43 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45455688898888777778887754
No 205
>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identifi
Probab=21.20 E-value=1.2e+02 Score=18.82 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=18.2
Q ss_pred cCCCCCCeEEEEeCCeEEEEEEe
Q 027612 38 KLPASNNKFTYNCDAHTFNYLVD 60 (221)
Q Consensus 38 ki~~~~~k~~~~~~~~~f~~l~~ 60 (221)
++.|++.+.-+..|+..|+|+..
T Consensus 12 ~I~PG~G~~~Vr~Dgkv~~F~s~ 34 (54)
T cd00472 12 KIYPGHGKMYVRNDGKVFRFCSS 34 (54)
T ss_pred eecCCCccEEEecCCCEEEEECH
Confidence 57788777778889999988764
No 206
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=21.13 E-value=2e+02 Score=23.59 Aligned_cols=11 Identities=18% Similarity=0.597 Sum_probs=5.2
Q ss_pred HHHHHHhhhcc
Q 027612 205 LILIIVLSVCH 215 (221)
Q Consensus 205 ~~~~i~~~~C~ 215 (221)
++|+|.+.++|
T Consensus 170 ilF~i~~~~~g 180 (232)
T TIGR00869 170 ILFVLTLIVVK 180 (232)
T ss_pred HHHHHHHHHhC
Confidence 44444445553
No 207
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=21.04 E-value=2e+02 Score=24.62 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhc
Q 027612 78 PMAFLERVKDEFVSKY 93 (221)
Q Consensus 78 af~fL~~i~~~f~~~~ 93 (221)
+-.||+.++++|....
T Consensus 246 ~~~~Ldklh~eit~~L 261 (384)
T KOG0972|consen 246 VGPYLDKLHKEITKAL 261 (384)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 5568888888886655
No 208
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=21.01 E-value=1.3e+02 Score=21.29 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=21.6
Q ss_pred hcHHHHHHhhhhhHhhHHh--hhhHHHhHHHHhhccHHHHH
Q 027612 147 ENIEKVLDRGEKIELLVDK--TENLHQQAQDFRSTGTKMRR 185 (221)
Q Consensus 147 ~ni~~~l~Rge~l~~l~~k--s~~L~~~s~~f~~~a~~l~~ 185 (221)
..+..+|.++..|+.+..- ++.|....+.....++.++.
T Consensus 5 ~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e 45 (113)
T PF00306_consen 5 GQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIRE 45 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 4455555666666666554 55565555555555555554
No 209
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=20.71 E-value=1.4e+02 Score=18.55 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHhccCCCC-CCeEEEEeCCeEEEEEE--eCCEEEEEEecCC
Q 027612 25 SGNFNSIAYQCLQKLPAS-NNKFTYNCDAHTFNYLV--DNGYTYCVVADES 72 (221)
Q Consensus 25 ~~~~~~ia~~iL~ki~~~-~~k~~~~~~~~~f~~l~--~~~~~~~~i~d~~ 72 (221)
-.+|+.+...+-+++... .-+..|+.+|.-.+=+. .+|-.|+|...+.
T Consensus 8 ~~s~e~lL~~it~~v~l~~gVr~lyt~~G~~V~~l~~l~dg~~yVa~g~e~ 58 (60)
T PF03607_consen 8 FRSFEQLLDEITEKVQLPSGVRKLYTLDGKRVKSLDELEDGGSYVASGREP 58 (60)
T ss_dssp HSSHHHHHHHHHHSSSSTTS-SEEEETTSSEESSGGGS-TTEEEEEESSSS
T ss_pred hcCHHHHHHHHHhhcCCCcccceEECCCCCEeCCHHHHCCCCEEEEEcCCc
Confidence 357888888888877654 35677888886554333 4788899986553
No 210
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=20.67 E-value=2.3e+02 Score=21.02 Aligned_cols=8 Identities=13% Similarity=0.725 Sum_probs=3.1
Q ss_pred chHHHHHH
Q 027612 76 QIPMAFLE 83 (221)
Q Consensus 76 ~~af~fL~ 83 (221)
..|..||+
T Consensus 25 ~~al~~ld 32 (142)
T PF04048_consen 25 ELALSLLD 32 (142)
T ss_pred HHHHHhcC
Confidence 33444433
No 211
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=20.66 E-value=2e+02 Score=17.01 Aligned_cols=18 Identities=17% Similarity=0.060 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027612 193 KIKLIVLGILIALILIIV 210 (221)
Q Consensus 193 k~~iii~~~v~~~~~~i~ 210 (221)
+.+..+..+++++.+++|
T Consensus 11 ~~~~~v~~~~~F~gi~~w 28 (49)
T PF05545_consen 11 RSIGTVLFFVFFIGIVIW 28 (49)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444444
No 212
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=20.63 E-value=2.9e+02 Score=18.77 Aligned_cols=6 Identities=33% Similarity=1.071 Sum_probs=2.5
Q ss_pred HHHHHH
Q 027612 183 MRRKMW 188 (221)
Q Consensus 183 l~~~~~ 188 (221)
++.+.|
T Consensus 69 V~e~P~ 74 (94)
T PF05957_consen 69 VRENPW 74 (94)
T ss_pred HHHChH
Confidence 444443
No 213
>PF12279 DUF3619: Protein of unknown function (DUF3619); InterPro: IPR022064 This protein is found in bacteria. Proteins in this family are about 140 amino acids in length. This protein has two conserved sequence motifs: AAR and DDLP.
Probab=20.59 E-value=1.7e+02 Score=21.78 Aligned_cols=18 Identities=17% Similarity=0.523 Sum_probs=11.6
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 027612 185 RKMWLQNMKIKLIVLGIL 202 (221)
Q Consensus 185 ~~~~~~~~k~~iii~~~v 202 (221)
..-||++....+.+..++
T Consensus 67 ~~~~~~r~~~~~pl~aLv 84 (131)
T PF12279_consen 67 GGSWWRRLGLALPLLALV 84 (131)
T ss_pred CccHHHHHHHHHHHHHHH
Confidence 456888888655555444
No 214
>PF13044 DUF3904: Protein of unknown function (DUF3904)
Probab=20.45 E-value=1.1e+02 Score=25.56 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=21.0
Q ss_pred ccHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHhhhc
Q 027612 179 TGTKMRRKMWLQNMKIKLIVLGILIA-LILIIVLSVC 214 (221)
Q Consensus 179 ~a~~l~~~~~~~~~k~~iii~~~v~~-~~~~i~~~~C 214 (221)
+-+.+--..||.-+--|||++++|++ +++..=++.|
T Consensus 399 ~ikevtgtswwmvmihyiivgliviv~vv~glklwgc 435 (436)
T PF13044_consen 399 NIKEVTGTSWWMVMIHYIIVGLIVIVVVVFGLKLWGC 435 (436)
T ss_pred chhhccCcchHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 33555566788888777777765444 3333334444
No 215
>PF10831 DUF2556: Protein of unknown function (DUF2556); InterPro: IPR022540 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=20.39 E-value=1.5e+02 Score=17.90 Aligned_cols=15 Identities=0% Similarity=-0.046 Sum_probs=7.4
Q ss_pred HHhHHHHHHHHHHHH
Q 027612 190 QNMKIKLIVLGILIA 204 (221)
Q Consensus 190 ~~~k~~iii~~~v~~ 204 (221)
|+|++.+..++.+.+
T Consensus 3 rky~wlvvfav~~fl 17 (53)
T PF10831_consen 3 RKYWWLVVFAVFVFL 17 (53)
T ss_pred ceehhHHHHHHHHHH
Confidence 445555555544444
No 216
>COG3771 Predicted membrane protein [Function unknown]
Probab=20.36 E-value=73 Score=21.90 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=8.9
Q ss_pred HHHHHHHhhhccCC
Q 027612 204 ALILIIVLSVCHGF 217 (221)
Q Consensus 204 ~~~~~i~~~~C~gf 217 (221)
.+-+++-+.+||+|
T Consensus 50 ~~G~~lgwli~g~f 63 (97)
T COG3771 50 AAGFALGWLICGLF 63 (97)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455556788877
No 217
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=20.03 E-value=1.1e+02 Score=15.64 Aligned_cols=10 Identities=40% Similarity=0.610 Sum_probs=6.4
Q ss_pred HHHHHhhhcc
Q 027612 206 ILIIVLSVCH 215 (221)
Q Consensus 206 ~~~i~~~~C~ 215 (221)
.....++.||
T Consensus 7 ~~~~~LsgCG 16 (24)
T PF13627_consen 7 ALALALSGCG 16 (24)
T ss_pred HHHHHHHhcc
Confidence 3445578996
No 218
>PRK09662 GspL-like protein; Provisional
Probab=20.01 E-value=79 Score=26.83 Aligned_cols=23 Identities=0% Similarity=0.210 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 027612 182 KMRRKMWLQNMKIKLIVLGILIA 204 (221)
Q Consensus 182 ~l~~~~~~~~~k~~iii~~~v~~ 204 (221)
+..+..||+.+|..++++++.++
T Consensus 124 k~~~~~~~~~WR~~Ai~a~l~lv 146 (286)
T PRK09662 124 RVSYRKQWARWRVMILPILLILV 146 (286)
T ss_pred cccccchhHhhHHHHHHHHHHHH
Confidence 44567788888877776554433
Done!