Query 027612
Match_columns 221
No_of_seqs 153 out of 1006
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 21:22:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027612.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027612hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b93_A Vesicle-associated memb 100.0 4.6E-58 1.6E-62 362.8 7.5 189 3-193 1-189 (189)
2 2nut_C Vesicle-trafficking pro 100.0 8E-50 2.7E-54 317.9 14.9 184 5-191 2-196 (196)
3 3kyq_A YKT6, synaptobrevin hom 100.0 2.1E-37 7E-42 245.7 9.1 177 4-185 2-194 (199)
4 4afi_A AP-3 complex subunit de 100.0 1.8E-33 6.1E-38 218.0 14.7 120 3-123 53-172 (173)
5 3hd7_A Vesicle-associated memb 100.0 3.3E-31 1.1E-35 184.2 10.6 87 128-214 4-90 (91)
6 2vx8_A Nucleoporin-like protei 100.0 3.4E-29 1.2E-33 193.4 12.5 121 3-124 43-163 (169)
7 2kog_A Vesicle-associated memb 100.0 3E-30 1E-34 187.4 0.2 88 127-214 31-118 (119)
8 3bw6_A Synaptobrevin homolog Y 99.9 1.1E-23 3.9E-28 158.9 12.8 123 4-130 5-144 (144)
9 2nps_A VAMP-4, vesicle-associa 99.9 5.6E-25 1.9E-29 147.2 3.2 72 124-195 3-74 (74)
10 1sfc_A VAMP 2, protein (synapt 99.9 1.1E-23 3.9E-28 147.2 7.2 68 128-195 29-96 (96)
11 1l4a_A Synaptobrevin; snare, s 99.9 2E-24 7E-29 146.5 2.0 71 124-194 10-80 (80)
12 3b5n_A Synaptobrevin homolog 1 99.8 7.2E-21 2.5E-25 122.4 6.1 60 129-188 2-61 (61)
13 1n7s_A Vesicle-associated memb 99.8 8E-21 2.7E-25 123.1 6.3 61 128-188 3-63 (63)
14 1gl2_A Endobrevin; membrane pr 99.8 3.7E-19 1.3E-23 115.8 4.5 62 124-185 4-65 (65)
15 1urq_A M-tomosyn isoform; tran 99.6 1.7E-16 5.9E-21 101.8 5.0 59 129-187 4-62 (63)
16 3fie_C Fragment of vesicle-ass 98.3 3.4E-09 1.2E-13 60.7 -5.5 30 128-157 8-37 (38)
17 3zym_A Phosphatidylinositol-bi 97.9 3.9E-06 1.3E-10 70.4 2.4 32 128-159 279-310 (310)
18 3hd7_B Syntaxin-1A; membrane p 97.5 0.0015 5.3E-08 46.1 10.7 44 129-172 21-64 (109)
19 2fh5_A Signal recognition part 97.1 0.0013 4.5E-08 50.6 6.9 86 7-94 13-104 (185)
20 3hd7_A Vesicle-associated memb 93.7 0.73 2.5E-05 31.0 9.0 50 129-178 12-61 (91)
21 2kog_A Vesicle-associated memb 89.5 0.17 5.8E-06 36.0 2.2 49 131-179 42-90 (119)
22 2fz0_A R-snare NYV1P, V-snare 88.0 1.5 5.1E-05 31.6 6.1 60 28-87 46-114 (149)
23 1w63_Q Adapter-related protein 87.6 6.9 0.00023 28.8 11.3 47 47-93 49-95 (158)
24 2vgl_S AP-2 complex subunit si 87.4 6.3 0.00022 28.3 9.7 47 47-93 49-95 (142)
25 3tjz_C Coatomer subunit zeta-1 85.1 9.3 0.00032 28.0 11.4 88 5-93 12-105 (153)
26 1w63_M Adaptor-related protein 84.4 6 0.00021 34.0 9.5 90 4-93 1-95 (423)
27 1rh5_B Preprotein translocase 84.0 1.2 4.2E-05 28.7 3.7 53 158-210 4-56 (74)
28 1jth_B Syntaxin 1A; coiled-coi 83.7 3.4 0.00011 26.6 5.9 44 129-172 10-53 (77)
29 2vgl_M AP-2 complex subunit MU 82.6 20 0.0007 30.8 12.2 48 47-94 47-94 (435)
30 2ww9_B Protein transport prote 82.4 1.9 6.4E-05 28.2 4.1 48 162-209 21-68 (80)
31 2j3t_C Trafficking protein par 80.6 10 0.00035 27.5 8.2 86 33-121 46-137 (145)
32 1n7s_A Vesicle-associated memb 76.7 11 0.00036 23.2 6.3 51 137-187 5-55 (63)
33 3b5n_A Synaptobrevin homolog 1 75.2 11 0.00039 22.9 6.1 50 138-187 4-53 (61)
34 1sfc_A VAMP 2, protein (synapt 74.4 16 0.00053 24.6 7.1 49 138-186 32-80 (96)
35 2nps_B Syntaxin 13, vesicle-as 74.2 11 0.00038 23.6 6.0 44 129-172 6-49 (71)
36 2wwb_B SEC61gamma, protein tra 72.3 1 3.6E-05 28.5 0.6 50 159-208 4-53 (68)
37 2j3t_D Trafficking protein par 71.0 35 0.0012 26.6 10.2 87 33-122 119-210 (219)
38 1t3j_A Mitofusin 1; coiled coi 70.6 11 0.00039 25.4 5.5 47 129-175 36-82 (96)
39 3b5n_B Protein SSO1; snare com 67.5 20 0.00067 22.3 6.8 46 129-174 10-55 (69)
40 3cue_A Transport protein parti 65.8 37 0.0013 26.5 8.3 75 46-121 120-218 (219)
41 3cue_C Transport protein parti 65.0 38 0.0013 24.8 8.1 57 33-91 52-113 (159)
42 1n7s_B Syntaxin 1A; neuronal s 64.0 22 0.00075 22.0 5.7 44 129-172 12-55 (68)
43 1gl2_B Syntaxin 7; membrane pr 63.9 23 0.00077 21.8 5.7 45 129-173 9-53 (65)
44 3mp7_B Preprotein translocase 62.4 4.4 0.00015 25.0 2.0 49 162-210 4-52 (61)
45 1utg_A Uteroglobin; steroid bi 61.9 15 0.00052 23.1 4.6 44 113-156 20-63 (70)
46 1ccd_A Clara cell 17 KD protei 59.4 17 0.00059 23.3 4.6 43 113-155 22-64 (77)
47 4a4y_A Protein MXIG; protein b 58.8 16 0.00055 24.9 4.5 43 5-59 85-127 (146)
48 2j3w_A Sedlin, trafficking pro 56.3 52 0.0018 23.5 9.8 74 45-121 64-139 (142)
49 2k1a_A Integrin alpha-IIB; sin 53.6 23 0.00079 20.0 3.9 20 199-218 19-38 (42)
50 2l8s_A Integrin alpha-1; trans 52.6 12 0.0004 22.4 2.7 21 198-218 17-37 (54)
51 2knc_A Integrin alpha-IIB; tra 52.1 12 0.00041 22.4 2.7 20 199-218 21-40 (54)
52 2nps_A VAMP-4, vesicle-associa 51.5 35 0.0012 21.5 5.1 24 156-179 42-65 (74)
53 2zxe_G FXYD10, phospholemman-l 50.8 22 0.00077 22.6 3.9 31 189-220 16-46 (74)
54 3fym_A Putative uncharacterize 47.6 3.9 0.00013 29.0 0.0 24 188-211 101-124 (130)
55 3j1r_A Archaeal adhesion filam 47.6 22 0.00075 17.7 2.7 14 198-211 12-25 (26)
56 1utr_A Uteroglobin; clara cell 46.9 28 0.00094 23.3 4.2 42 114-155 42-83 (96)
57 1nhl_A Synaptosomal-associated 46.0 44 0.0015 19.6 5.2 39 134-172 5-43 (54)
58 1sfc_B Protein (syntaxin 1A), 45.9 57 0.002 20.9 6.5 44 129-172 21-64 (83)
59 1l4a_A Synaptobrevin; snare, s 45.8 17 0.00059 23.4 3.0 49 131-179 24-72 (80)
60 3h3g_B Parathyroid hormone-rel 44.7 14 0.00048 18.1 1.7 13 180-192 4-16 (24)
61 1l4a_C S-SNAP25 fusion protein 44.0 59 0.002 21.1 5.4 48 128-175 26-73 (83)
62 1urq_A M-tomosyn isoform; tran 43.4 55 0.0019 20.0 5.8 49 130-178 12-60 (63)
63 1gl2_A Endobrevin; membrane pr 41.8 58 0.002 19.9 5.2 48 138-185 11-58 (65)
64 3lcn_C MRNA transport factor G 41.8 17 0.00058 18.4 1.8 21 128-148 5-25 (29)
65 2ygg_A Sodium/hydrogen exchang 40.2 17 0.00057 23.0 2.0 23 135-157 6-28 (70)
66 2klu_A T-cell surface glycopro 36.6 6.5 0.00022 24.5 -0.2 22 193-214 9-30 (70)
67 1txp_A HnRNP C, heterogeneous 36.5 20 0.00068 18.2 1.6 23 134-160 4-26 (28)
68 1zkr_A Major allergen I polype 33.5 66 0.0023 23.5 4.7 43 114-156 22-65 (153)
69 3vmt_A Monofunctional glycosyl 33.3 20 0.00069 28.8 2.1 28 181-208 25-52 (263)
70 2ww9_B Protein transport prote 32.3 26 0.00089 22.7 2.1 28 156-183 8-35 (80)
71 2jp3_A FXYD domain-containing 31.7 54 0.0018 20.4 3.4 12 189-200 14-25 (67)
72 1dn1_B Syntaxin 1A, syntaxin b 31.4 31 0.0011 27.5 3.0 41 129-169 200-240 (267)
73 1pi7_A VPU protein, U ORF prot 30.2 54 0.0019 17.7 2.9 14 196-209 7-20 (36)
74 2pjw_V Vacuolar protein sortin 29.7 1.2E+02 0.0042 20.0 5.8 41 128-168 32-72 (91)
75 1n7s_C SNAP-25A; neuronal snar 27.1 1.2E+02 0.0043 19.2 5.9 45 128-172 22-66 (79)
76 3b5n_C Protein transport prote 26.6 1.2E+02 0.0041 18.9 6.7 56 129-184 12-67 (70)
77 3bo0_B Preprotein translocase 26.2 96 0.0033 18.7 4.0 17 193-209 37-53 (65)
78 2jo1_A Phospholemman; FXYD1, N 25.8 74 0.0025 20.0 3.3 8 191-198 15-22 (72)
79 1f5n_A Interferon-induced guan 22.2 1.4E+02 0.0047 26.8 5.7 24 169-192 517-540 (592)
80 1iij_A ERBB-2 receptor protein 21.7 1.1E+02 0.0036 16.5 3.1 16 194-209 7-22 (35)
81 3f4m_A Tumor necrosis factor, 21.4 1E+02 0.0036 22.7 3.9 76 70-157 85-160 (161)
82 3kf9_B MLCK2, myosin light cha 21.0 28 0.00095 16.6 0.5 8 186-193 2-9 (22)
83 2kfe_A Meucin-24; alpha-helix, 20.8 60 0.002 16.2 1.7 18 130-147 6-23 (26)
84 1spf_A Pulmonary surfactant-as 20.4 1.1E+02 0.0037 16.1 3.4 16 195-210 13-28 (35)
85 1rmk_A MU-O-conotoxin mrvib; b 20.2 31 0.0011 17.7 0.6 9 212-220 23-31 (31)
86 2jwa_A Receptor tyrosine-prote 20.2 49 0.0017 18.8 1.5 6 197-202 14-19 (44)
No 1
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=4.6e-58 Score=362.83 Aligned_cols=189 Identities=35% Similarity=0.612 Sum_probs=149.5
Q ss_pred CCceEEEEEEeCCeeEEeecCCCCCHHHHHHHHhccCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHH
Q 027612 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (221)
Q Consensus 3 ~~~i~Ya~Iar~~~iLae~~~~~~~~~~ia~~iL~ki~~~~~k~~~~~~~~~f~~l~~~~~~~~~i~d~~~~~~~af~fL 82 (221)
.|+|+|||||||++|||||+..+|||..+++++|+++|+.++|.+++.|+|.|||+.++|++|+|+||++||+++||.||
T Consensus 1 ~M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL 80 (189)
T 4b93_A 1 SMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 80 (189)
T ss_dssp CCSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccchhhHHHHHHhhhhcCCchhhhHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhh
Q 027612 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELL 162 (221)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l 162 (221)
++|+++|...|+ ..+.++.|++++.+|++.|++.|++|+ +|.+.|++.+++++|+||++||.+||+++|+|||+||.|
T Consensus 81 ~~i~~eF~~~~~-~~~~~~~~~~~~~~f~~~l~~~~~~y~-d~~~~d~l~~~~~~l~ev~~im~~Ni~~vl~Rge~l~~L 158 (189)
T 4b93_A 81 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHHS-ENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELL 158 (189)
T ss_dssp HHHHHHHHHHHG-GGGGTCCTTTTHHHHHHHHHHHHHHHH-CC-------CCHHHHHTTTTCCEECCCCBCTTSSBCCCC
T ss_pred HHHHHHHHhhcc-ccccccCCccccchhhHHHHHHHHhhh-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 999999999995 445667788888899999999999995 566679999999999999999999999999999999999
Q ss_pred HHhhhhHHHhHHHHhhccHHHHHHHHHHHhH
Q 027612 163 VDKTENLHQQAQDFRSTGTKMRRKMWLQNMK 193 (221)
Q Consensus 163 ~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k 193 (221)
++||++|+.+|..|+++|++++|+|||+|+|
T Consensus 159 ~~ks~~L~~~s~~f~~~a~~l~r~mwwkn~K 189 (189)
T 4b93_A 159 IDKTENLVDSSVTFKTTSRNLARAMCMKNIK 189 (189)
T ss_dssp EETTCC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999987
No 2
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=8e-50 Score=317.94 Aligned_cols=184 Identities=24% Similarity=0.424 Sum_probs=116.0
Q ss_pred ceEEEEEEeC--CeeEEeecCCC---CC----HHHHHHHHhccCCC-CCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCC
Q 027612 5 SLIYAFVARG--NVVLAEYTEFS---GN----FNSIAYQCLQKLPA-SNNKFTYNCDAHTFNYLVDNGYTYCVVADESSG 74 (221)
Q Consensus 5 ~i~Ya~Iar~--~~iLae~~~~~---~~----~~~ia~~iL~ki~~-~~~k~~~~~~~~~f~~l~~~~~~~~~i~d~~~~ 74 (221)
||+|+||||+ ++|||+|++.+ |+ |..+++.+++++|+ .++|.+++.++|.|||+.++|++|+|+||++||
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp 81 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP 81 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcc
Confidence 6999999999 79999998743 44 88999999999997 578999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhcCCCCCCC-CCCCCccchhhHHHHHHhhhhcCCchhhhHHHHHHHhhhhhhhhhhhcHHHHH
Q 027612 75 RQIPMAFLERVKDEFVSKYGGGKAAT-APANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVL 153 (221)
Q Consensus 75 ~~~af~fL~~i~~~f~~~~~~~~~~~-~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~v~~im~~ni~~~l 153 (221)
+++||.||++|+++|...|+. .+.+ +.|+++ .+|++.|+++|++| ++|.+.|++.+++++|+||++||.+||+++|
T Consensus 82 ~r~af~fL~~i~~~F~~~~~~-~~~~~~~~~~~-~~f~~~l~~~~~~y-~~~~~~d~l~~~~~~l~ev~~im~~ni~~vl 158 (196)
T 2nut_C 82 KKLAFAYLEDLHSEFDEQHGK-KVPTVSRPYSF-IEFDTFIQKTKKLY-IDSRARRNLGSINTELQDVQRIMVANIEEVL 158 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-TTTTCCSTTTT-GGGHHHHHHHHTTT-SCCC-----------------CCEEEHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhccc-hhccccCCCch-HHHHHHHHHHHHHh-cCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999964 4443 578998 59999999999999 5777779999999999999999999999999
Q ss_pred HhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHHHHHHH
Q 027612 154 DRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQN 191 (221)
Q Consensus 154 ~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~ 191 (221)
+|||+||.|++||++|+.+|..|+++|++++|+|||++
T Consensus 159 ~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~~~~~~~k 196 (196)
T 2nut_C 159 QRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAK 196 (196)
T ss_dssp --------------------------------------
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999985
No 3
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=100.00 E-value=2.1e-37 Score=245.69 Aligned_cols=177 Identities=22% Similarity=0.301 Sum_probs=147.9
Q ss_pred CceEEEEEEeC--C--eeEEeecCCC----------CCHH-HHHHHHhccCCCCCCeEEEEeCCeEEE-EEEeCCEEEEE
Q 027612 4 KSLIYAFVARG--N--VVLAEYTEFS----------GNFN-SIAYQCLQKLPASNNKFTYNCDAHTFN-YLVDNGYTYCV 67 (221)
Q Consensus 4 ~~i~Ya~Iar~--~--~iLae~~~~~----------~~~~-~ia~~iL~ki~~~~~k~~~~~~~~~f~-~l~~~~~~~~~ 67 (221)
|.|++..|.+. + .+|+...+.+ ++|. -.++.++++++++ +|.+++.++|.|| |+.++|++|+|
T Consensus 2 mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~-~r~s~~~~~y~fH~y~~~~gl~yl~ 80 (199)
T 3kyq_A 2 MKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKG-SRASVKEQEYLCHVYVRSDSLAGVV 80 (199)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTT-EEEEEECSSEEEEEEECTTSEEEEE
T ss_pred ceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCC-CeEEEEeCCEEEEEEEecCCEEEEE
Confidence 45777788773 2 4566433322 2343 3567999999885 6999999999999 89999999999
Q ss_pred EecCCCCcchHHHHHHHHHHHHHhhcCCCCCCCCCCCCccchhhHHHHHHhhhhcCCchhhhHHHHHHHhhhhhhhhhhh
Q 027612 68 VADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMME 147 (221)
Q Consensus 68 i~d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~v~~im~~ 147 (221)
+||++||+++||.||++|+++|...|+...|.+..+.+ ..| +.|+++|++| +||.+.|++.++|++|+||++||.+
T Consensus 81 itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~--~~f-~~l~~~m~~Y-~dp~~~d~l~~~q~el~evk~iM~~ 156 (199)
T 3kyq_A 81 IADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPAT--IHY-TALDGHLSRY-QNPREADPMSKVQAELDETKIILHN 156 (199)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTT--CCC-CTHHHHHHHT-TSGGGCCCCHHHHHHHHTCCCEEES
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHhccchhhhcccccc--ccc-HHHHHHHHHh-CCchhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999755554332222 235 6788899889 6788889999999999999999999
Q ss_pred cHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHH
Q 027612 148 NIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRR 185 (221)
Q Consensus 148 ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~ 185 (221)
||+++|+|||+||.|++||++|+.+|..|+++|+++++
T Consensus 157 NI~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~lns 194 (199)
T 3kyq_A 157 TMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNS 194 (199)
T ss_dssp SGGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999985
No 4
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=218.01 Aligned_cols=120 Identities=32% Similarity=0.554 Sum_probs=114.3
Q ss_pred CCceEEEEEEeCCeeEEeecCCCCCHHHHHHHHhccCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHH
Q 027612 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (221)
Q Consensus 3 ~~~i~Ya~Iar~~~iLae~~~~~~~~~~ia~~iL~ki~~~~~k~~~~~~~~~f~~l~~~~~~~~~i~d~~~~~~~af~fL 82 (221)
+|+|+|||||||++|||||+..+|||..+++++|+++|++++|.+++.++|.|||+.++|++|+|+||++||+++||.||
T Consensus 53 ~M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FL 132 (173)
T 4afi_A 53 AMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 132 (173)
T ss_dssp CCCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred cccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHH
Confidence 56799999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccchhhHHHHHHhhhhcC
Q 027612 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVD 123 (221)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~ 123 (221)
++|+++|...|+ ..+.++.||+++.+|++.|++.|++||+
T Consensus 133 edI~~eF~~~yg-~~~~ta~pya~~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 133 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp HHHHHHHHHHHG-GGGGTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-hhhhhccCcchhHHHHHHHHHHHHHhcC
Confidence 999999999995 5678889999999999999999999964
No 5
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=99.97 E-value=3.3e-31 Score=184.19 Aligned_cols=87 Identities=32% Similarity=0.602 Sum_probs=85.3
Q ss_pred hhHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027612 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALIL 207 (221)
Q Consensus 128 ~dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~~v~~~~~ 207 (221)
.|++.++|++++||+++|.+||+++++|||+||.|+++|++|+.+|..|+++|++++|+|||+|+|++++++++++++++
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~ 83 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILI 83 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhc
Q 027612 208 IIVLSVC 214 (221)
Q Consensus 208 ~i~~~~C 214 (221)
+|++++|
T Consensus 84 ii~~~~~ 90 (91)
T 3hd7_A 84 IIIVYFS 90 (91)
T ss_dssp HHHHTTC
T ss_pred HHHHHHh
Confidence 9999999
No 6
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.96 E-value=3.4e-29 Score=193.38 Aligned_cols=121 Identities=31% Similarity=0.550 Sum_probs=107.4
Q ss_pred CCceEEEEEEeCCeeEEeecCCCCCHHHHHHHHhccCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHH
Q 027612 3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL 82 (221)
Q Consensus 3 ~~~i~Ya~Iar~~~iLae~~~~~~~~~~ia~~iL~ki~~~~~k~~~~~~~~~f~~l~~~~~~~~~i~d~~~~~~~af~fL 82 (221)
+|+|+|++|+||++||+||++.++||..+++.+++++++.++|.+++.|+|.|||+.+||++|+||+|++||+++||.||
T Consensus 43 ~M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fL 122 (169)
T 2vx8_A 43 GMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 122 (169)
T ss_dssp SSCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHH
Confidence 46799999999999999999999999999999999999977899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCccchhhHHHHHHhhhhcCC
Q 027612 83 ERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDH 124 (221)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~ 124 (221)
++|+++|...|+. .+.++.+++++.+|++.|++.|++|+++
T Consensus 123 edI~~eF~~~y~~-~~~~a~pysf~~eF~~~Lk~~~~~~~~~ 163 (169)
T 2vx8_A 123 NEVKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN 163 (169)
T ss_dssp HHHHHHHHHHHTT-GGGTCCTTTTHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHhhh-hhhccCCcchhHHHHHHHHHHHHHhcCc
Confidence 9999999999964 5666778999779999999999999643
No 7
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.95 E-value=3e-30 Score=187.42 Aligned_cols=88 Identities=32% Similarity=0.576 Sum_probs=85.8
Q ss_pred hhhHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 027612 127 EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALI 206 (221)
Q Consensus 127 ~~dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~~v~~~~ 206 (221)
+.|++.+++++++||+++|.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||+|+|+++++++++++++
T Consensus 31 ~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~iii 110 (119)
T 2kog_A 31 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIIL 110 (119)
T ss_dssp SCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhc
Q 027612 207 LIIVLSVC 214 (221)
Q Consensus 207 ~~i~~~~C 214 (221)
++|++++|
T Consensus 111 ~iIi~~~c 118 (119)
T 2kog_A 111 IIIIVYFS 118 (119)
T ss_dssp HHHHHHHH
T ss_pred HHhhhhee
Confidence 99999999
No 8
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.91 E-value=1.1e-23 Score=158.93 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=99.2
Q ss_pred CceEEEEEEeC----CeeEEeecCCC----------CCH-HHHHHHHhccCCCCCCeEEEEeCCeEEEEE-EeCCEEEEE
Q 027612 4 KSLIYAFVARG----NVVLAEYTEFS----------GNF-NSIAYQCLQKLPASNNKFTYNCDAHTFNYL-VDNGYTYCV 67 (221)
Q Consensus 4 ~~i~Ya~Iar~----~~iLae~~~~~----------~~~-~~ia~~iL~ki~~~~~k~~~~~~~~~f~~l-~~~~~~~~~ 67 (221)
|.|+|.+|+|+ .++|+++++.+ ++| ..+++++++++|++ +|++++.++|.|||+ .++|++|+|
T Consensus 5 Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~-~R~sv~~~~y~fH~~~~~~gl~~l~ 83 (144)
T 3bw6_A 5 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAG-QRQSIEEGNYIGHVYARSEGICGVL 83 (144)
T ss_dssp CCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTT-EEEEEEETTEEEEEEECTTSEEEEE
T ss_pred EEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCC-ceEEEEeCCEEEEEEEecCCEEEEE
Confidence 56888889998 67899988765 455 78999999999986 799999999999999 789999999
Q ss_pred EecCCCCcchHHHHHHHHHHHHHhhcCCCCCCCC-CCCCccchhhHHHHHHhhhhcCCchhhhH
Q 027612 68 VADESSGRQIPMAFLERVKDEFVSKYGGGKAATA-PANGLNKEFGPKLKELMQYCVDHPEEISK 130 (221)
Q Consensus 68 i~d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~-~~~~~~~~f~~~l~~~~~~~~~~~~~~dk 130 (221)
+||++||+++||.||++|+++|.+.|+...|.++ .+++ ...| +.|++.|++| +||.+.|+
T Consensus 84 i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~-~~~f-~~l~~~i~kY-qdp~~aD~ 144 (144)
T 3bw6_A 84 ITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETND-ALKM-KQLDTYISKY-QDPSQADA 144 (144)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCG-GGCC-THHHHHHHHT-SCC-----
T ss_pred EECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccC-Ccch-HHHHHHHHHh-CchhhcCC
Confidence 9999999999999999999999999975546653 3121 2345 7888999889 78877664
No 9
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.90 E-value=5.6e-25 Score=147.16 Aligned_cols=72 Identities=42% Similarity=0.666 Sum_probs=62.1
Q ss_pred CchhhhHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHHHHHHHhHHH
Q 027612 124 HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIK 195 (221)
Q Consensus 124 ~~~~~dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~ 195 (221)
+|.+.|++.+++.+|+||++||.+||+++|+|||+||.|+++|++|+..|..|+++|++++|+|||+++|++
T Consensus 3 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww~n~K~~ 74 (74)
T 2nps_A 3 MGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIK 74 (74)
T ss_dssp ---CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 466669999999999999999999999999999999999999999999999999999999999999999974
No 10
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.89 E-value=1.1e-23 Score=147.25 Aligned_cols=68 Identities=35% Similarity=0.639 Sum_probs=64.2
Q ss_pred hhHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHHHHHHHhHHH
Q 027612 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIK 195 (221)
Q Consensus 128 ~dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~ 195 (221)
.|++.+++.+|+||++||.+||+++|+|||+||.|+++|++|+..|..|+++|++++|+|||+|+|++
T Consensus 29 ~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwkn~K~~ 96 (96)
T 1sfc_A 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM 96 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 49999999999999999999999999999999999999999999999999999999999999999975
No 11
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.89 E-value=2e-24 Score=146.49 Aligned_cols=71 Identities=35% Similarity=0.606 Sum_probs=62.4
Q ss_pred CchhhhHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHHHHHHHhHH
Q 027612 124 HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKI 194 (221)
Q Consensus 124 ~~~~~dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~ 194 (221)
+|.+.|++.+++.+|+||++||.+||+++|+|||+|+.|+++|++|+..|..|+++|++++|+|||+|+|+
T Consensus 10 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~wwkn~K~ 80 (80)
T 1l4a_A 10 PVQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWWKNCKM 80 (80)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC------
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556999999999999999999999999999999999999999999999999999999999999999985
No 12
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.83 E-value=7.2e-21 Score=122.38 Aligned_cols=60 Identities=37% Similarity=0.730 Sum_probs=59.3
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHHHH
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMW 188 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~ 188 (221)
|++.+++.+|+||++||.+||+++|+|||+|+.|+++|++|+..|..|+++|++++|+||
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 61 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 789999999999999999999999999999999999999999999999999999999999
No 13
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.83 E-value=8e-21 Score=123.11 Aligned_cols=61 Identities=36% Similarity=0.648 Sum_probs=59.9
Q ss_pred hhHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHHHH
Q 027612 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMW 188 (221)
Q Consensus 128 ~dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~ 188 (221)
.|++.+++.++++|++||.+||+++|+|||+|+.|+++|++|+..|..|+++|++++|+||
T Consensus 3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 63 (63)
T 1n7s_A 3 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3999999999999999999999999999999999999999999999999999999999998
No 14
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.76 E-value=3.7e-19 Score=115.79 Aligned_cols=62 Identities=31% Similarity=0.595 Sum_probs=52.7
Q ss_pred CchhhhHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHH
Q 027612 124 HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRR 185 (221)
Q Consensus 124 ~~~~~dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~ 185 (221)
+|.+.|++.+++.+|+||++||.+||+++|+|||+|+.|+++|++|+..|..|+++|++++|
T Consensus 4 ~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r 65 (65)
T 1gl2_A 4 MSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566999999999999999999999999999999999999999999999999999999986
No 15
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.64 E-value=1.7e-16 Score=101.75 Aligned_cols=59 Identities=24% Similarity=0.312 Sum_probs=55.4
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHHH
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKM 187 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 187 (221)
.++..++.++++|+++|.+|++++++|||+|+.|+++|++|..+|..|.+.|++|++++
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky 62 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY 62 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47889999999999999999999999999999999999999999999999999999875
No 16
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.32 E-value=3.4e-09 Score=60.69 Aligned_cols=30 Identities=40% Similarity=0.550 Sum_probs=28.3
Q ss_pred hhHHHHHHHhhhhhhhhhhhcHHHHHHhhh
Q 027612 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGE 157 (221)
Q Consensus 128 ~dkl~~i~~~l~~v~~im~~ni~~~l~Rge 157 (221)
.|++.++|.+|+||++||.+||+++|+||+
T Consensus 8 ~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 8 NRRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 388999999999999999999999999996
No 17
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=97.89 E-value=3.9e-06 Score=70.38 Aligned_cols=32 Identities=31% Similarity=0.735 Sum_probs=23.9
Q ss_pred hhHHHHHHHhhhhhhhhhhhcHHHHHHhhhhh
Q 027612 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 159 (221)
Q Consensus 128 ~dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l 159 (221)
.|.+.++|++++||++||.+||+++++|||+|
T Consensus 279 ~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 279 MDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 37899999999999999999999999999986
No 18
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.51 E-value=0.0015 Score=46.06 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=37.4
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHh
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 172 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~ 172 (221)
+.+.++++.+.|+.+++.+=-..+-+.|+.+|.++...++-..+
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~ 64 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY 64 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 67889999999999999887788889999999998877766544
No 19
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=97.10 E-value=0.0013 Score=50.63 Aligned_cols=86 Identities=20% Similarity=0.322 Sum_probs=62.3
Q ss_pred EEEEEEeCCeeEEeecCCC----CCHHHHHHHHhccCCCCCCeEEEEeCCeEEEEEEeC--CEEEEEEecCCCCcchHHH
Q 027612 7 IYAFVARGNVVLAEYTEFS----GNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN--GYTYCVVADESSGRQIPMA 80 (221)
Q Consensus 7 ~Ya~Iar~~~iLae~~~~~----~~~~~ia~~iL~ki~~~~~k~~~~~~~~~f~~l~~~--~~~~~~i~d~~~~~~~af~ 80 (221)
+++.+.+|+.||=.|+... ...+.+++.+|=.=..+ ..++++|+|...+..+| +++|++|-..-.+-.-+=.
T Consensus 13 ~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~~--~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~YiD~ 90 (185)
T 2fh5_A 13 FFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGG--NNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVDK 90 (185)
T ss_dssp EEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHHH
T ss_pred EEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhccccC--CCceeEcCeEEEEEEeccCCEEEEEEEcccccchHHHH
Confidence 5788899999998885432 23577777765433322 23588899999988765 7999999888777777888
Q ss_pred HHHHHHHHHHhhcC
Q 027612 81 FLERVKDEFVSKYG 94 (221)
Q Consensus 81 fL~~i~~~f~~~~~ 94 (221)
||+.++..|...|.
T Consensus 91 LL~~v~~~Fv~~Y~ 104 (185)
T 2fh5_A 91 LIDDVHRLFRDKYR 104 (185)
T ss_dssp HHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999884
No 20
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=93.66 E-value=0.73 Score=31.00 Aligned_cols=50 Identities=10% Similarity=0.182 Sum_probs=28.3
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhh
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRS 178 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~ 178 (221)
+.++.++.-+.+.-+.+.++-+++=+=.++-++|.+.|.....+|...++
T Consensus 12 ~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~r 61 (91)
T 3hd7_A 12 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 61 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444455556666677777777777755
No 21
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=89.53 E-value=0.17 Score=36.02 Aligned_cols=49 Identities=10% Similarity=0.169 Sum_probs=23.0
Q ss_pred HHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhc
Q 027612 131 LAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRST 179 (221)
Q Consensus 131 l~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~ 179 (221)
+..++..+.+.-+.+.+.=+++=+=.++-+.|.+.|.....+|...+++
T Consensus 42 vdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rk 90 (119)
T 2kog_A 42 VDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 90 (119)
T ss_dssp HHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333233444445555667777777666553
No 22
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=87.96 E-value=1.5 Score=31.58 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=43.6
Q ss_pred HHHHH-HHHhccCCCC-CCeEEE---E-eCCeEEEEEE---eCCEEEEEEecCCCCcchHHHHHHHHHH
Q 027612 28 FNSIA-YQCLQKLPAS-NNKFTY---N-CDAHTFNYLV---DNGYTYCVVADESSGRQIPMAFLERVKD 87 (221)
Q Consensus 28 ~~~ia-~~iL~ki~~~-~~k~~~---~-~~~~~f~~l~---~~~~~~~~i~d~~~~~~~af~fL~~i~~ 87 (221)
|..++ ..++.++-+- .+|.+- . .|||-.+|-. +++.+|+|.+..+.|+-++...|.++++
T Consensus 46 Fh~Li~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 46 FHNLIMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp HHHHHHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred HHHHHHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 55544 3446665443 334433 3 4899888866 3578999999999999999999999976
No 23
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=87.56 E-value=6.9 Score=28.81 Aligned_cols=47 Identities=9% Similarity=0.187 Sum_probs=41.3
Q ss_pred EEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhc
Q 027612 47 TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKY 93 (221)
Q Consensus 47 ~~~~~~~~f~~l~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~ 93 (221)
.++.+++.|.|...+++.|+++++.+.+.-..+.||..+.+.+..-+
T Consensus 49 ~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf 95 (158)
T 1w63_Q 49 FLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYF 95 (158)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 56778999988888999999999999999999999999888877665
No 24
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=87.37 E-value=6.3 Score=28.34 Aligned_cols=47 Identities=9% Similarity=0.179 Sum_probs=41.4
Q ss_pred EEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhc
Q 027612 47 TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKY 93 (221)
Q Consensus 47 ~~~~~~~~f~~l~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~ 93 (221)
.+..+++.|.|...+++.|+++++.+.+.-..+.||..+.+.+..-+
T Consensus 49 ~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf 95 (142)
T 2vgl_S 49 FVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYF 95 (142)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 56778999988888999999999999999999999999888887665
No 25
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=85.11 E-value=9.3 Score=28.01 Aligned_cols=88 Identities=11% Similarity=0.157 Sum_probs=60.6
Q ss_pred ceEEEEEEe--CCeeEEeecCCC-CCH---HHHHHHHhccCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcchH
Q 027612 5 SLIYAFVAR--GNVVLAEYTEFS-GNF---NSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIP 78 (221)
Q Consensus 5 ~i~Ya~Iar--~~~iLae~~~~~-~~~---~~ia~~iL~ki~~~~~k~~~~~~~~~f~~l~~~~~~~~~i~d~~~~~~~a 78 (221)
||.+-+|-. |.++|+-|=... .+. ....+.+.+++...++ -.+..+++.+.|....++.|+++++.+.+.-..
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~~-~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~i 90 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDS-EIALLEGLTVVYKSSIDLYFYVIGSSYENELML 90 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCCC-CEEEETTEEEEEEECSSCEEEEEEETTSCHHHH
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCC-CEEEECCEEEEEEEECCEEEEEEEcCCCChHHH
Confidence 566666664 457777553221 221 2233344444333322 356789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 027612 79 MAFLERVKDEFVSKY 93 (221)
Q Consensus 79 f~fL~~i~~~f~~~~ 93 (221)
+.||..+.+.+..-+
T Consensus 91 le~L~~~ve~l~~yf 105 (153)
T 3tjz_C 91 MTVLNCLFDSLSQML 105 (153)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999988887766
No 26
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=84.37 E-value=6 Score=33.99 Aligned_cols=90 Identities=12% Similarity=0.113 Sum_probs=58.1
Q ss_pred CceEEEEEEeC-Cee-EE-eecCC-CCC-HHHHHHHHhccCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcchH
Q 027612 4 KSLIYAFVARG-NVV-LA-EYTEF-SGN-FNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIP 78 (221)
Q Consensus 4 ~~i~Ya~Iar~-~~i-La-e~~~~-~~~-~~~ia~~iL~ki~~~~~k~~~~~~~~~f~~l~~~~~~~~~i~d~~~~~~~a 78 (221)
|||...+|... +.+ |+ .|... ..+ .+..-+.++.+......--.++.+++.|.|...+++.|+|+++.+.+.-..
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 80 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLV 80 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 46666666653 344 44 24432 222 233333344332211112356788999989889999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 027612 79 MAFLERVKDEFVSKY 93 (221)
Q Consensus 79 f~fL~~i~~~f~~~~ 93 (221)
+.||..+.+.+..-+
T Consensus 81 le~L~~~v~~l~~yf 95 (423)
T 1w63_M 81 FSFLYKVVQVFSEYF 95 (423)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988887766
No 27
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=84.00 E-value=1.2 Score=28.68 Aligned_cols=53 Identities=11% Similarity=0.155 Sum_probs=33.4
Q ss_pred hhHhhHHhhhhHHHhHHHHhhccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027612 158 KIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIV 210 (221)
Q Consensus 158 ~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~~v~~~~~~i~ 210 (221)
+++.+.+...+.-.++.+|-+.++|=-|+-+++-.|...+..+++-++-|+|-
T Consensus 4 ~~~~~~e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfiIk 56 (74)
T 1rh5_B 4 DFNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIH 56 (74)
T ss_dssp --------CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777888888989888888888888877766655555555443
No 28
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=83.66 E-value=3.4 Score=26.62 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=36.6
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHh
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 172 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~ 172 (221)
+.+.++++.+.|+.+++.+=-..+.+.|+-||.++...+.-..+
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 53 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY 53 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 67889999999999999888888889999999887766665433
No 29
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=82.64 E-value=20 Score=30.76 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=42.1
Q ss_pred EEEeCCeEEEEEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhcC
Q 027612 47 TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG 94 (221)
Q Consensus 47 ~~~~~~~~f~~l~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~ 94 (221)
.++.+++.|.|...+++.|+|+++.+.+.-..+.||..+.+.+..-+.
T Consensus 47 ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~ 94 (435)
T 2vgl_M 47 VTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG 94 (435)
T ss_dssp EEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 567889999898889999999999999999999999998888877663
No 30
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=82.42 E-value=1.9 Score=28.25 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=33.7
Q ss_pred hHHhhhhHHHhHHHHhhccHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027612 162 LVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILII 209 (221)
Q Consensus 162 l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~~v~~~~~~i 209 (221)
+.+...+.-.++.+|-+.++|=.|+-+++-.|...+..+++-++.|+|
T Consensus 21 ~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiI 68 (80)
T 2ww9_B 21 LVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAI 68 (80)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666677788888888888888888887776666555555554
No 31
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=80.61 E-value=10 Score=27.51 Aligned_cols=86 Identities=10% Similarity=0.143 Sum_probs=53.9
Q ss_pred HHHhccCCCC---CCeEEEEeCCeEEEE-EEeCCEEEEEEecCCCCcchHHHHHHHHH-HHHHhhcCCCCCCC-CCCCCc
Q 027612 33 YQCLQKLPAS---NNKFTYNCDAHTFNY-LVDNGYTYCVVADESSGRQIPMAFLERVK-DEFVSKYGGGKAAT-APANGL 106 (221)
Q Consensus 33 ~~iL~ki~~~---~~k~~~~~~~~~f~~-l~~~~~~~~~i~d~~~~~~~af~fL~~i~-~~f~~~~~~~~~~~-~~~~~~ 106 (221)
..+.+++.|. ..-.+++.++|..|+ ....|+=|+.++|+..+ -.-.||.+|. +.|......+..-. ..|=.
T Consensus 46 ~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~- 122 (145)
T 2j3t_C 46 RSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVG--PIRDVLHHIYSALYVEFVVKNPLCPLGQTVQ- 122 (145)
T ss_dssp HHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCEEEEEECTTCC--CCHHHHHHHHHTTHHHHTTTCTTSCTTSCCC-
T ss_pred HHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCEEEEEecCCcc--hHHHHHHHHHHHHHHHHHhcCCCCCCCCcee-
Confidence 3445666554 234677788887775 44579999999998755 3557899999 56665332222111 11111
Q ss_pred cchhhHHHHHHhhhh
Q 027612 107 NKEFGPKLKELMQYC 121 (221)
Q Consensus 107 ~~~f~~~l~~~~~~~ 121 (221)
+..|+..++.+++.+
T Consensus 123 s~~Fd~~v~~~~~~~ 137 (145)
T 2j3t_C 123 SELFRSRLDSYVRSL 137 (145)
T ss_dssp CHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHhC
Confidence 256888888887653
No 32
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=76.73 E-value=11 Score=23.18 Aligned_cols=51 Identities=10% Similarity=0.153 Sum_probs=28.4
Q ss_pred hhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHHH
Q 027612 137 QVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKM 187 (221)
Q Consensus 137 ~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 187 (221)
.+..++.-+.+..+-+.++-+++-.=-++-+.|.+.|..+...|...++..
T Consensus 5 ~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a 55 (63)
T 1n7s_A 5 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555556666666666666555544
No 33
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=75.24 E-value=11 Score=22.88 Aligned_cols=50 Identities=10% Similarity=0.221 Sum_probs=25.1
Q ss_pred hhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHHH
Q 027612 138 VSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKM 187 (221)
Q Consensus 138 l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 187 (221)
+..++.-+.+..+-+.++-+++-.=.++-+.|.+.|......|...++..
T Consensus 4 l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a 53 (61)
T 3b5n_A 4 TAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444455555555666655555555444
No 34
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=74.39 E-value=16 Score=24.61 Aligned_cols=49 Identities=10% Similarity=0.154 Sum_probs=19.9
Q ss_pred hhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHHH
Q 027612 138 VSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRK 186 (221)
Q Consensus 138 l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~~ 186 (221)
+..++.-+.+..+-+.++-+++-.=-++-+.|.+.|..+...|.+.++.
T Consensus 32 l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~ 80 (96)
T 1sfc_A 32 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETS 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444433333334444444444444444444433
No 35
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=74.17 E-value=11 Score=23.64 Aligned_cols=44 Identities=14% Similarity=0.307 Sum_probs=37.2
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHh
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 172 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~ 172 (221)
+.+.++++.+.++.+++.+=-..+-+.|+-||.++...+.-..+
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 49 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVH 49 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 67889999999999999887788889999999998776666544
No 36
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=72.29 E-value=1 Score=28.52 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=33.7
Q ss_pred hHhhHHhhhhHHHhHHHHhhccHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 027612 159 IELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILI 208 (221)
Q Consensus 159 l~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~~v~~~~~~ 208 (221)
++.+.+...+.-.++.+|-+.++|=.|+-+++-.|...+-.+++-++-|+
T Consensus 4 ~~~~~e~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf~ 53 (68)
T 2wwb_B 4 VMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFF 53 (68)
T ss_dssp SSSSSTTHHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666677788888888888888888888766555555554444
No 37
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=71.03 E-value=35 Score=26.60 Aligned_cols=87 Identities=11% Similarity=0.090 Sum_probs=55.5
Q ss_pred HHHhccCCCCC---CeEEEEeCCeEEEE-EEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhcCCCCCCC-CCCCCcc
Q 027612 33 YQCLQKLPASN---NKFTYNCDAHTFNY-LVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAAT-APANGLN 107 (221)
Q Consensus 33 ~~iL~ki~~~~---~k~~~~~~~~~f~~-l~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~-~~~~~~~ 107 (221)
..+.+++.|.+ .-..++.+.|..|+ ....|+-|++++|+. ....-.||.+|.+.|......+..-. ..|-. +
T Consensus 119 d~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~--~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~-s 195 (219)
T 2j3t_D 119 FAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPR--QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIR-C 195 (219)
T ss_dssp HHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTT--CCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCC-C
T ss_pred HHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCC--chHHHHHHHHHHHHHHHHhccCCCCCCCCccc-h
Confidence 33455666542 23567788887775 456799999999986 44566789999987766432222211 11111 2
Q ss_pred chhhHHHHHHhhhhc
Q 027612 108 KEFGPKLKELMQYCV 122 (221)
Q Consensus 108 ~~f~~~l~~~~~~~~ 122 (221)
..|+..++++++.+.
T Consensus 196 ~~Fd~~v~~l~~~~~ 210 (219)
T 2j3t_D 196 ELFDQNLKLALEVAE 210 (219)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 569999998887663
No 38
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=70.58 E-value=11 Score=25.37 Aligned_cols=47 Identities=17% Similarity=0.283 Sum_probs=35.6
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHH
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQD 175 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~ 175 (221)
.-...+..++++++.-|.+-|+.+-.+=..||.+..++..|...|..
T Consensus 36 ~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~ 82 (96)
T 1t3j_A 36 TTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQ 82 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34567888899999999999988888888888777666666555543
No 39
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=67.50 E-value=20 Score=22.35 Aligned_cols=46 Identities=15% Similarity=0.345 Sum_probs=38.7
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHH
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQ 174 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~ 174 (221)
+.+.++++.+.++.+++.+=-..+.+.|+.||.++...+.-..+..
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~ 55 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVE 55 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999988888899999999999877776665533
No 40
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=65.80 E-value=37 Score=26.47 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=45.5
Q ss_pred EEEEeCCeEEE-EEEeCCEEEEEEecCCCCc----------------------chHHHHHHHHHHHHHhhcCCCCC-CCC
Q 027612 46 FTYNCDAHTFN-YLVDNGYTYCVVADESSGR----------------------QIPMAFLERVKDEFVSKYGGGKA-ATA 101 (221)
Q Consensus 46 ~~~~~~~~~f~-~l~~~~~~~~~i~d~~~~~----------------------~~af~fL~~i~~~f~~~~~~~~~-~~~ 101 (221)
..+..+.|..| |....|+=|++++|+..+. ...-.||.+|.+.|......+.. ...
T Consensus 120 ~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~~~ 199 (219)
T 3cue_A 120 RQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYSME 199 (219)
T ss_dssp CEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCTTCCTT
T ss_pred EEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 45666777666 4556799999999987633 44678999999887663221211 111
Q ss_pred CCCCccchhhHHHHHHhhhh
Q 027612 102 PANGLNKEFGPKLKELMQYC 121 (221)
Q Consensus 102 ~~~~~~~~f~~~l~~~~~~~ 121 (221)
.+-. ...|+..++.+++.+
T Consensus 200 ~pI~-S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 200 MPIR-SNLFDEKVKKMVENL 218 (219)
T ss_dssp SCCC-CHHHHHHHHHHHHHH
T ss_pred Cccc-cHHHHHHHHHHHHhc
Confidence 1111 145777777776543
No 41
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=65.01 E-value=38 Score=24.82 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=39.7
Q ss_pred HHHhccCCCCC---CeEEEEeCCeEEEEE-EeCCEEEEEEecCCCCcchHHHHHHHHHH-HHHh
Q 027612 33 YQCLQKLPASN---NKFTYNCDAHTFNYL-VDNGYTYCVVADESSGRQIPMAFLERVKD-EFVS 91 (221)
Q Consensus 33 ~~iL~ki~~~~---~k~~~~~~~~~f~~l-~~~~~~~~~i~d~~~~~~~af~fL~~i~~-~f~~ 91 (221)
+.+.+++.|.+ .-..++.+.|..|+. ...|+=|++++|+..+ ..-.+|.+|.. .|..
T Consensus 52 ~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~ 113 (159)
T 3cue_C 52 RSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQ--SYTQVLQYIYSHIYVK 113 (159)
T ss_dssp HHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSS--CTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcc--hHHHHHHHHHHHHHHH
Confidence 44566776653 344666788877755 4579999999998744 44567899887 6655
No 42
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=64.00 E-value=22 Score=22.03 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=37.6
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHh
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 172 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~ 172 (221)
+.+.++++.+.++.+++.+=-..+.+.|+.|+.++...+.-..+
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 55 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY 55 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 67889999999999999888888999999999998776666544
No 43
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=63.89 E-value=23 Score=21.78 Aligned_cols=45 Identities=11% Similarity=0.279 Sum_probs=37.8
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhH
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQA 173 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s 173 (221)
+.+.++++.+.++.+++.+=-..+-+.|+.|+.++...+.-..+.
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v 53 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHV 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999998877888899999999987776665543
No 44
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=62.38 E-value=4.4 Score=25.00 Aligned_cols=49 Identities=10% Similarity=0.101 Sum_probs=30.7
Q ss_pred hHHhhhhHHHhHHHHhhccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027612 162 LVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIV 210 (221)
Q Consensus 162 l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~iii~~~v~~~~~~i~ 210 (221)
+.+...+.-.++.+|-+.++|=.|+-..+-.|...+..+++-++-|+|-
T Consensus 4 ~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~iGf~Ik 52 (61)
T 3mp7_B 4 LQERIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGMLIR 52 (61)
T ss_dssp ----CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666677787878787788888888877666555555544443
No 45
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=61.88 E-value=15 Score=23.07 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=33.9
Q ss_pred HHHHHhhhhcCCchhhhHHHHHHHhhhhhhhhhhhcHHHHHHhh
Q 027612 113 KLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRG 156 (221)
Q Consensus 113 ~l~~~~~~~~~~~~~~dkl~~i~~~l~~v~~im~~ni~~~l~Rg 156 (221)
.....++.|+.+|...+...++++-++....-=+.|+.+++++-
T Consensus 20 ~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~kI 63 (70)
T 1utg_A 20 SYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEKI 63 (70)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34456677877887778888999998887777788888887653
No 46
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=59.41 E-value=17 Score=23.33 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=33.5
Q ss_pred HHHHHhhhhcCCchhhhHHHHHHHhhhhhhhhhhhcHHHHHHh
Q 027612 113 KLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (221)
Q Consensus 113 ~l~~~~~~~~~~~~~~dkl~~i~~~l~~v~~im~~ni~~~l~R 155 (221)
.....++.|+.+|...+...++++-++....-=+.|+.+++++
T Consensus 22 ~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~k 64 (77)
T 1ccd_A 22 NYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456677887788777888899998888777777888887765
No 47
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=58.76 E-value=16 Score=24.87 Aligned_cols=43 Identities=14% Similarity=0.425 Sum_probs=32.2
Q ss_pred ceEEEEEEeCCeeEEeecCCCCCHHHHHHHHhccCCCCCCeEEEEeCCeEEEEEE
Q 027612 5 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLV 59 (221)
Q Consensus 5 ~i~Ya~Iar~~~iLae~~~~~~~~~~ia~~iL~ki~~~~~k~~~~~~~~~f~~l~ 59 (221)
-|+|.-|++++ +|+++++.|. ++.-+.+--++++++..||...
T Consensus 85 giiyltiskdn--icqfsdekge----------qidinsqfnsfeydgisfhlkn 127 (146)
T 4a4y_A 85 GIIYLTISKDN--ICQFSDEKGE----------QIDINSQFNSFEYDGISFHLKN 127 (146)
T ss_dssp EEEEEEECTTC--CEEEECTTSC----------EECCCSSSSEEEETTEEEEEEE
T ss_pred cEEEEEEecCc--ceecccccCc----------EeeccccccceeecceEeehhc
Confidence 48899999988 4899987662 3444444458999999999854
No 48
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=56.33 E-value=52 Score=23.48 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=47.6
Q ss_pred eEEEEeCCeEEE-EEEeCCEEEEEEecCCCCcchHHHHHHHHHHHHHhhcCCCCCCC-CCCCCccchhhHHHHHHhhhh
Q 027612 45 KFTYNCDAHTFN-YLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAAT-APANGLNKEFGPKLKELMQYC 121 (221)
Q Consensus 45 k~~~~~~~~~f~-~l~~~~~~~~~i~d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~-~~~~~~~~~f~~~l~~~~~~~ 121 (221)
+.+...+++..| |....|+=|+.++|+. .....-.||++|.+.|..... +..-. ..|-. +..|+..++++++.|
T Consensus 64 ~~~~~~~~y~v~~~~T~tg~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~-NPfy~~~~pI~-s~~Fd~~v~~~~~~~ 139 (142)
T 2j3w_A 64 KTVDKFNEWFVSAFVTAGHMRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIR-SSAFDRKVQFLGKKH 139 (142)
T ss_dssp EEEEEETTEEEEEEECTTCCEEEEEESSC-CHHHHHHHHHHHHHHHHHHHH-STTCCTTCCCC-CHHHHHHHHHHHHHH
T ss_pred EeeecccceEEEEEEcCCCcEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhc-CCCCCCCCcee-cHHHHHHHHHHHHHh
Confidence 345566787666 5556799999999973 244567899999988766442 22111 11111 246888888888665
No 49
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=53.57 E-value=23 Score=19.96 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhhhccCCc
Q 027612 199 LGILIALILIIVLSVCHGFN 218 (221)
Q Consensus 199 ~~~v~~~~~~i~~~~C~gf~ 218 (221)
++++++.+++..++=||=|+
T Consensus 19 ~GLllL~li~~~LwK~GFFk 38 (42)
T 2k1a_A 19 GGLLLLTILVLAMWKVGFFK 38 (42)
T ss_dssp HHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHcCccc
Confidence 44444455555677884334
No 50
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=52.61 E-value=12 Score=22.44 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhhhccCCc
Q 027612 198 VLGILIALILIIVLSVCHGFN 218 (221)
Q Consensus 198 i~~~v~~~~~~i~~~~C~gf~ 218 (221)
+++++++.+++..++=||=|+
T Consensus 17 l~GLLLL~Lii~~LwK~GFFK 37 (54)
T 2l8s_A 17 FAGLLLLMLLILALWKIGFFK 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccc
Confidence 344444455555677884333
No 51
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=52.09 E-value=12 Score=22.43 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhhhccCCc
Q 027612 199 LGILIALILIIVLSVCHGFN 218 (221)
Q Consensus 199 ~~~v~~~~~~i~~~~C~gf~ 218 (221)
++++++.+++..++=||=|+
T Consensus 21 ~GLllL~li~~~LwK~GFFk 40 (54)
T 2knc_A 21 GGLLLLTILVLAMWKVGFFK 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCccc
Confidence 44445555555677884333
No 52
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=51.48 E-value=35 Score=21.52 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=13.3
Q ss_pred hhhhHhhHHhhhhHHHhHHHHhhc
Q 027612 156 GEKIELLVDKTENLHQQAQDFRST 179 (221)
Q Consensus 156 ge~l~~l~~ks~~L~~~s~~f~~~ 179 (221)
.++-+.|...|......|...++.
T Consensus 42 ~~ks~~L~~~s~~F~~~a~~l~r~ 65 (74)
T 2nps_A 42 QDKSESLSDNATAFSNRSKQLRRQ 65 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666666666665543
No 53
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=50.78 E-value=22 Score=22.56 Aligned_cols=31 Identities=10% Similarity=0.350 Sum_probs=10.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhccCCccC
Q 027612 189 LQNMKIKLIVLGILIALILIIVLSVCHGFNCG 220 (221)
Q Consensus 189 ~~~~k~~iii~~~v~~~~~~i~~~~C~gf~C~ 220 (221)
|...++..++.++|++++ .|++..+|-.+|.
T Consensus 16 Y~tLRigGLifA~vLfi~-GI~iilS~kcrCk 46 (74)
T 2zxe_G 16 YYRLRVVGLIVAAVLCVI-GIIILLAGKCRCK 46 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHTTTC----
T ss_pred hHHheeccchhHHHHHHH-HHHHHHcCccccC
Confidence 445555544444333322 2223334333554
No 54
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=47.64 E-value=3.9 Score=28.99 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHh
Q 027612 188 WLQNMKIKLIVLGILIALILIIVL 211 (221)
Q Consensus 188 ~~~~~k~~iii~~~v~~~~~~i~~ 211 (221)
.++.+.+.++++++++++++++|+
T Consensus 101 ~~~~~~~~~i~~~~~i~i~~~~~~ 124 (130)
T 3fym_A 101 KSKEPIQLLVIMGITVLITLLLWI 124 (130)
T ss_dssp ------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666655655565654
No 55
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=47.61 E-value=22 Score=17.66 Aligned_cols=14 Identities=14% Similarity=0.361 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHh
Q 027612 198 VLGILIALILIIVL 211 (221)
Q Consensus 198 i~~~v~~~~~~i~~ 211 (221)
+..+...+++..|+
T Consensus 12 viav~aaVllylW~ 25 (26)
T 3j1r_A 12 LIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33344445555554
No 56
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=46.86 E-value=28 Score=23.31 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=32.8
Q ss_pred HHHHhhhhcCCchhhhHHHHHHHhhhhhhhhhhhcHHHHHHh
Q 027612 114 LKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (221)
Q Consensus 114 l~~~~~~~~~~~~~~dkl~~i~~~l~~v~~im~~ni~~~l~R 155 (221)
.+..++.|+.+|...+...++|+=+++...-=+.|+.+++++
T Consensus 42 Y~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~ 83 (96)
T 1utr_A 42 YEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 83 (96)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345566787777777888999999998888888888877764
No 57
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=45.96 E-value=44 Score=19.65 Aligned_cols=39 Identities=8% Similarity=0.209 Sum_probs=31.2
Q ss_pred HHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHh
Q 027612 134 VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 172 (221)
Q Consensus 134 i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~ 172 (221)
...-++++.++-.+.+..+-+.||.|+...+.-++...+
T Consensus 5 ~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~ 43 (54)
T 1nhl_A 5 ILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKD 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhH
Confidence 455578888888899999999999999887777666655
No 58
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=45.89 E-value=57 Score=20.94 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=37.1
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHh
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 172 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~ 172 (221)
..+.++++.+.++.+++.+=-..+-+.|+-|+.++...+.-..+
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 64 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 67889999999999999887788889999999988776665544
No 59
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=45.83 E-value=17 Score=23.41 Aligned_cols=49 Identities=10% Similarity=0.163 Sum_probs=25.3
Q ss_pred HHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhc
Q 027612 131 LAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRST 179 (221)
Q Consensus 131 l~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~ 179 (221)
+..++..+.+.-+.+.+.=+++=+=.++-+.|...|......|...++.
T Consensus 24 l~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk 72 (80)
T 1l4a_A 24 VEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRK 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444433333444444444444444555666677777777766553
No 60
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=44.68 E-value=14 Score=18.11 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=10.2
Q ss_pred cHHHHHHHHHHHh
Q 027612 180 GTKMRRKMWLQNM 192 (221)
Q Consensus 180 a~~l~~~~~~~~~ 192 (221)
-..++|+||..+.
T Consensus 4 ~Q~~rRr~wL~~l 16 (24)
T 3h3g_B 4 IQDLRRRFFLHHL 16 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3578999998874
No 61
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=43.95 E-value=59 Score=21.12 Aligned_cols=48 Identities=13% Similarity=0.290 Sum_probs=39.5
Q ss_pred hhHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHH
Q 027612 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQD 175 (221)
Q Consensus 128 ~dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~ 175 (221)
.+.....-.-+++.+++....+..+..-||.|+......+.+..+-+.
T Consensus 26 l~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~ 73 (83)
T 1l4a_C 26 LESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKD 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777788899999999999999999999998888887766443
No 62
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=43.38 E-value=55 Score=20.03 Aligned_cols=49 Identities=12% Similarity=0.219 Sum_probs=28.0
Q ss_pred HHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhh
Q 027612 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRS 178 (221)
Q Consensus 130 kl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~ 178 (221)
.+..+...+.+..+.+.+.-+++=.=.++-+.|.+.+.+....|..+++
T Consensus 12 qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~ 60 (63)
T 1urq_A 12 AASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMML 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555556666666677777766666554
No 63
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=41.84 E-value=58 Score=19.87 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=21.5
Q ss_pred hhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHHH
Q 027612 138 VSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRR 185 (221)
Q Consensus 138 l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~~ 185 (221)
+..++.-+.+-.+-+.++-+++-.=-++-+.|.+.|..+...|...++
T Consensus 11 l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k 58 (65)
T 1gl2_A 11 VRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKT 58 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444555555555544443
No 64
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=41.83 E-value=17 Score=18.42 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=17.4
Q ss_pred hhHHHHHHHhhhhhhhhhhhc
Q 027612 128 ISKLAKVKAQVSEVKGVMMEN 148 (221)
Q Consensus 128 ~dkl~~i~~~l~~v~~im~~n 148 (221)
.+++.-++..++|-++|+.++
T Consensus 5 ~sKm~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 5 ASKMKLLKKKIEEQREILQKT 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 478888999999988887665
No 65
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=40.18 E-value=17 Score=22.97 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=19.4
Q ss_pred HHhhhhhhhhhhhcHHHHHHhhh
Q 027612 135 KAQVSEVKGVMMENIEKVLDRGE 157 (221)
Q Consensus 135 ~~~l~~v~~im~~ni~~~l~Rge 157 (221)
.++++++++|+..|+.++-+|.-
T Consensus 6 ~~~~e~ir~IL~~NLykiRqr~~ 28 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQRLR 28 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45689999999999999988853
No 66
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=36.60 E-value=6.5 Score=24.55 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 027612 193 KIKLIVLGILIALILIIVLSVC 214 (221)
Q Consensus 193 k~~iii~~~v~~~~~~i~~~~C 214 (221)
++.+++++++.+++|.-+..+|
T Consensus 9 ~~LivlGg~~~lll~~glcI~c 30 (70)
T 2klu_A 9 MALIVLGGVAGLLLFIGLGIFF 30 (70)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 3335677777666666666665
No 67
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=36.49 E-value=20 Score=18.18 Aligned_cols=23 Identities=30% Similarity=0.668 Sum_probs=13.1
Q ss_pred HHHhhhhhhhhhhhcHHHHHHhhhhhH
Q 027612 134 VKAQVSEVKGVMMENIEKVLDRGEKIE 160 (221)
Q Consensus 134 i~~~l~~v~~im~~ni~~~l~Rge~l~ 160 (221)
++.++.+++ .++|.+|+|=|+++
T Consensus 4 IkkELtQIK----~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 4 IKKELTQIK----QKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHSS
T ss_pred HHHHHHHHH----HHHHHHHHHHHhhh
Confidence 445554443 36677777766554
No 68
>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=33.51 E-value=66 Score=23.47 Aligned_cols=43 Identities=19% Similarity=0.110 Sum_probs=32.0
Q ss_pred HHHHhhhhcCCchhhhHHHHHHHhhh-hhhhhhhhcHHHHHHhh
Q 027612 114 LKELMQYCVDHPEEISKLAKVKAQVS-EVKGVMMENIEKVLDRG 156 (221)
Q Consensus 114 l~~~~~~~~~~~~~~dkl~~i~~~l~-~v~~im~~ni~~~l~Rg 156 (221)
....++.|+.+|.......++++-++ ...+-=+.|+.+++++-
T Consensus 22 Yk~~LkkYn~~pealeA~~eLKqCvD~~LS~Etr~nI~klLekI 65 (153)
T 1zkr_A 22 YVEQVAQYKALPVVLENARILKNCVDAKMTEEDKENALSLLDKI 65 (153)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 44566677778877788889998888 66666677887777664
No 69
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=33.28 E-value=20 Score=28.78 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 027612 181 TKMRRKMWLQNMKIKLIVLGILIALILI 208 (221)
Q Consensus 181 ~~l~~~~~~~~~k~~iii~~~v~~~~~~ 208 (221)
-+..+|.|+++.-.+++++++++++++.
T Consensus 25 ~~~~kk~~~~~~~~~~~~~~l~~~~~~~ 52 (263)
T 3vmt_A 25 GKPPKKKKSKRILLKILLTILIIIALFI 52 (263)
T ss_dssp ----------CCTTHHHHHHHHHHHHHH
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3555667777776555555544444333
No 70
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=32.31 E-value=26 Score=22.74 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=7.6
Q ss_pred hhhhHhhHHhhhhHHHhHHHHhhccHHH
Q 027612 156 GEKIELLVDKTENLHQQAQDFRSTGTKM 183 (221)
Q Consensus 156 ge~l~~l~~ks~~L~~~s~~f~~~a~~l 183 (221)
|++.+...++.+.+.+....|.+.++++
T Consensus 8 ~~~~~~~~d~~~~~~e~~~~f~kd~~rv 35 (80)
T 2ww9_B 8 GEEKKQSNNQVEKLVEAPVEFVREGTQF 35 (80)
T ss_dssp -------------CCHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445555555555443
No 71
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=31.71 E-value=54 Score=20.40 Aligned_cols=12 Identities=8% Similarity=0.501 Sum_probs=5.2
Q ss_pred HHHhHHHHHHHH
Q 027612 189 LQNMKIKLIVLG 200 (221)
Q Consensus 189 ~~~~k~~iii~~ 200 (221)
|...++.-++.+
T Consensus 14 Y~tLRigGLifA 25 (67)
T 2jp3_A 14 WESLQLGGLIFG 25 (67)
T ss_dssp GHHHHHHHHHHH
T ss_pred hHHheecchhhH
Confidence 344454444433
No 72
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=31.42 E-value=31 Score=27.55 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=32.9
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhH
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL 169 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L 169 (221)
..+.+++..+.++.+++.+=-..|.+.|+-|+.++...+.-
T Consensus 200 ~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a 240 (267)
T 1dn1_B 200 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHA 240 (267)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45778888888888888777677889999999988766654
No 73
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=30.16 E-value=54 Score=17.74 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 027612 196 LIVLGILIALILII 209 (221)
Q Consensus 196 iii~~~v~~~~~~i 209 (221)
.++++++++++.++
T Consensus 7 ~ivalivalIiaIV 20 (36)
T 1pi7_A 7 AIVALVVAIIIAIV 20 (36)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444433333
No 74
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=29.72 E-value=1.2e+02 Score=19.99 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=32.2
Q ss_pred hhHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhh
Q 027612 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTEN 168 (221)
Q Consensus 128 ~dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~ 168 (221)
..++..+-.++..++--|..++++-.++.+.+-++.+|-..
T Consensus 32 d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~ 72 (91)
T 2pjw_V 32 DSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISE 72 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888888998888888877777665544
No 75
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=27.07 E-value=1.2e+02 Score=19.22 Aligned_cols=45 Identities=13% Similarity=0.285 Sum_probs=38.3
Q ss_pred hhHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHh
Q 027612 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 172 (221)
Q Consensus 128 ~dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~ 172 (221)
.+.+.....-+.++.++-.+.+..+-..||.|+...+..++...+
T Consensus 22 ~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~ 66 (79)
T 1n7s_C 22 LESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQD 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhH
Confidence 367778888889999999999999999999999988777776655
No 76
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=26.56 E-value=1.2e+02 Score=18.89 Aligned_cols=56 Identities=5% Similarity=0.074 Sum_probs=39.5
Q ss_pred hHHHHHHHhhhhhhhhhhhcHHHHHHhhhhhHhhHHhhhhHHHhHHHHhhccHHHH
Q 027612 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMR 184 (221)
Q Consensus 129 dkl~~i~~~l~~v~~im~~ni~~~l~Rge~l~~l~~ks~~L~~~s~~f~~~a~~l~ 184 (221)
+.....-.-.++..++=..++..+-+-||+|+..+..-+.+..+.+.=.++.+.|+
T Consensus 12 ~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk 67 (70)
T 3b5n_C 12 ASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELK 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455567777777788999999999999988888888777665444444444
No 77
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=26.21 E-value=96 Score=18.71 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027612 193 KIKLIVLGILIALILII 209 (221)
Q Consensus 193 k~~iii~~~v~~~~~~i 209 (221)
+..++..+++.++.+++
T Consensus 37 ~~t~vv~~~v~~i~~~i 53 (65)
T 3bo0_B 37 KVTALGISLLGIIGYII 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHH
Confidence 34444333333333333
No 78
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=25.81 E-value=74 Score=19.98 Aligned_cols=8 Identities=25% Similarity=0.414 Sum_probs=3.1
Q ss_pred HhHHHHHH
Q 027612 191 NMKIKLIV 198 (221)
Q Consensus 191 ~~k~~iii 198 (221)
..++.-++
T Consensus 15 tLRiGGLi 22 (72)
T 2jo1_A 15 SLQIGGLV 22 (72)
T ss_dssp HHHHHHHH
T ss_pred HhhccchH
Confidence 34433333
No 79
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=22.19 E-value=1.4e+02 Score=26.83 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=15.6
Q ss_pred HHHhHHHHhhccHHHHHHHHHHHh
Q 027612 169 LHQQAQDFRSTGTKMRRKMWLQNM 192 (221)
Q Consensus 169 L~~~s~~f~~~a~~l~~~~~~~~~ 192 (221)
|.++=+.|+.+-++|..+|=..+-
T Consensus 517 ~~~~~~~~~e~~~ql~~kme~~~~ 540 (592)
T 1f5n_A 517 MEQKERSYQEHLKQLTEKMENDRV 540 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777755544
No 80
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=21.73 E-value=1.1e+02 Score=16.48 Aligned_cols=16 Identities=19% Similarity=0.544 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 027612 194 IKLIVLGILIALILII 209 (221)
Q Consensus 194 ~~iii~~~v~~~~~~i 209 (221)
...|.++++.+++++|
T Consensus 7 ~~sIaagVvglll~vi 22 (35)
T 1iij_A 7 VTFIIATVVGVLLFLI 22 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CcEeHHHHHHHHHHHH
Confidence 3444555555433333
No 81
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=21.42 E-value=1e+02 Score=22.66 Aligned_cols=76 Identities=13% Similarity=0.253 Sum_probs=40.5
Q ss_pred cCCCCcchHHHHHHHHHHHHHhhcCCCCCCCCCCCCccchhhHHHHHHhhhhcCCchhhhHHHHHHHhhhhhhhhhhhcH
Q 027612 70 DESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENI 149 (221)
Q Consensus 70 d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~v~~im~~ni 149 (221)
|-+|.+...-..|.|.++...+...+. .++.| ...++.....| .+|+=.+.+-.- +..+.-.-+.+.+
T Consensus 85 dfTfD~~~L~~~L~ec~~lL~~lv~~H----LT~KS-----~~Ri~~vF~~f-~~~efL~~lf~~--~~~~~L~kI~~~L 152 (161)
T 3f4m_A 85 DFTFEAAVLAGLLTECRDVLLELVEHH----LTPKS-----HGRIRHVFDHF-SDPGLLTALYGP--DFTQHLGKICDGL 152 (161)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHTTT----SCHHH-----HHHHHHHHHHH-TCHHHHHHHTSG--GGHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHhh----CCcch-----HHHHHHHHHHh-CCHHHHHHHhCc--HHHHHHHHHHHHH
Confidence 445566666666777766666554211 12111 23555566666 445332332221 4445555566788
Q ss_pred HHHHHhhh
Q 027612 150 EKVLDRGE 157 (221)
Q Consensus 150 ~~~l~Rge 157 (221)
+++|++|.
T Consensus 153 nklld~g~ 160 (161)
T 3f4m_A 153 RKLLDEGK 160 (161)
T ss_dssp HHHHHTTC
T ss_pred HHHHhCCC
Confidence 88888874
No 82
>3kf9_B MLCK2, myosin light chain kinase 2, skeletal/cardiac MUS; centrin, cell cycle, cell divisio mitosis, calmodulin-binding; 2.60A {Scherffelia dubia}
Probab=21.02 E-value=28 Score=16.63 Aligned_cols=8 Identities=25% Similarity=0.746 Sum_probs=5.7
Q ss_pred HHHHHHhH
Q 027612 186 KMWLQNMK 193 (221)
Q Consensus 186 ~~~~~~~k 193 (221)
+.||+++-
T Consensus 2 ~~WkK~f~ 9 (22)
T 3kf9_B 2 RRWKKNFI 9 (26)
T ss_dssp HHHHHHHH
T ss_pred chHHHHHH
Confidence 46888864
No 83
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=20.78 E-value=60 Score=16.17 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=12.1
Q ss_pred HHHHHHHhhhhhhhhhhh
Q 027612 130 KLAKVKAQVSEVKGVMME 147 (221)
Q Consensus 130 kl~~i~~~l~~v~~im~~ 147 (221)
-+.++++.+.++++-|..
T Consensus 6 i~~kiK~kl~~akdK~k~ 23 (26)
T 2kfe_A 6 FMSNLKEKLSGVKEKMKN 23 (26)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 456677777777777654
No 84
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=20.38 E-value=1.1e+02 Score=16.08 Aligned_cols=16 Identities=25% Similarity=0.644 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 027612 195 KLIVLGILIALILIIV 210 (221)
Q Consensus 195 ~iii~~~v~~~~~~i~ 210 (221)
.+|+..++++++.+|.
T Consensus 13 LlivVvVvVlvVvViv 28 (35)
T 1spf_A 13 LLVVVVVVVLVVVVIV 28 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEEEEeeehhhHHHHH
Confidence 3444444444444443
No 85
>1rmk_A MU-O-conotoxin mrvib; beta sheet, cystine knot; NMR {Conus marmoreus} SCOP: g.3.6.1
Probab=20.25 E-value=31 Score=17.69 Aligned_cols=9 Identities=33% Similarity=0.833 Sum_probs=5.5
Q ss_pred hhccCCccC
Q 027612 212 SVCHGFNCG 220 (221)
Q Consensus 212 ~~C~gf~C~ 220 (221)
.||+||-|+
T Consensus 23 LIC~~~~Ci 31 (31)
T 1rmk_A 23 LICGPFVCV 31 (31)
T ss_dssp CCBCSSSBC
T ss_pred ceEeeEEeC
Confidence 466666664
No 86
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=20.16 E-value=49 Score=18.82 Aligned_cols=6 Identities=17% Similarity=0.578 Sum_probs=2.1
Q ss_pred HHHHHH
Q 027612 197 IVLGIL 202 (221)
Q Consensus 197 ii~~~v 202 (221)
+.+++|
T Consensus 14 Ia~~vV 19 (44)
T 2jwa_A 14 IISAVV 19 (44)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 333333
Done!