BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027613
         (221 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OV6|A Chain A, Cd1c In Complex With Mpm
           (Mannosyl-Beta1-Phosphomycoketide)
          Length = 397

 Score = 28.1 bits (61), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 153 WDRQNPTQIVTEICGFVTILSGTFLLHKTKDAVDGSSASIQMRMSKHSDENAYD 206
           W R    Q  T++   +    GT+ L  T D  DG +A +  R+ KHS     D
Sbjct: 338 WMRGEQEQQGTQLGDILPNAQGTWYLRATLDVADGEAAGLSCRV-KHSSLEGQD 390


>pdb|3HD6|A Chain A, Crystal Structure Of The Human Rhesus Glycoprotein Rhcg
          Length = 490

 Score = 27.7 bits (60), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 17/67 (25%), Positives = 27/67 (40%)

Query: 53  PEYGQTHVMVYIGVCSLVGSLSVMSVKALGIALKLTFEGMNQLIYPQTWIFTMIVLVCVI 112
           P +   HVMV++G   L+  L      A+G    L   G+   +  Q W   +     V+
Sbjct: 66  PSFQDVHVMVFVGFGFLMTFLQRYGFSAVGFNFLLAAFGIQWALLMQGWFHFLQDRYIVV 125

Query: 113 TQMNYLN 119
              N +N
Sbjct: 126 GVENLIN 132


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.135    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,561,226
Number of Sequences: 62578
Number of extensions: 181316
Number of successful extensions: 324
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 3
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)