Query 027613
Match_columns 221
No_of_seqs 136 out of 476
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 12:34:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2922 Uncharacterized conser 100.0 4.9E-48 1.1E-52 351.3 12.9 167 29-195 155-321 (335)
2 PF05653 Mg_trans_NIPA: Magnes 100.0 2.1E-42 4.5E-47 312.3 13.1 161 28-188 140-300 (300)
3 PRK09541 emrE multidrug efflux 94.8 0.054 1.2E-06 42.9 4.7 82 93-183 25-106 (110)
4 PRK02971 4-amino-4-deoxy-L-ara 94.6 0.06 1.3E-06 43.6 4.6 73 106-184 53-126 (129)
5 PRK11431 multidrug efflux syst 94.3 0.088 1.9E-06 41.4 5.0 81 93-182 24-104 (105)
6 PRK15051 4-amino-4-deoxy-L-ara 93.8 0.16 3.4E-06 39.9 5.4 80 95-181 31-110 (111)
7 COG2510 Predicted membrane pro 93.6 0.53 1.1E-05 39.2 8.3 82 88-180 51-139 (140)
8 PRK10452 multidrug efflux syst 93.5 0.16 3.6E-06 40.9 5.1 72 106-183 35-106 (120)
9 PRK10650 multidrug efflux syst 93.2 0.15 3.3E-06 40.5 4.4 78 93-179 30-107 (109)
10 PF00893 Multi_Drug_Res: Small 91.6 0.36 7.8E-06 36.6 4.6 68 93-165 24-91 (93)
11 TIGR03340 phn_DUF6 phosphonate 90.9 0.49 1.1E-05 41.7 5.4 75 100-181 62-136 (281)
12 TIGR00776 RhaT RhaT L-rhamnose 87.8 2.3 4.9E-05 38.2 7.4 72 110-184 69-140 (290)
13 PF06800 Sugar_transport: Suga 87.7 3.6 7.8E-05 37.6 8.7 91 93-186 36-128 (269)
14 TIGR03340 phn_DUF6 phosphonate 85.3 2.7 5.9E-05 37.0 6.4 66 105-178 216-281 (281)
15 COG2076 EmrE Membrane transpor 83.7 1.4 3.1E-05 35.0 3.6 75 94-181 26-104 (106)
16 PF13536 EmrE: Multidrug resis 80.5 2.5 5.5E-05 32.4 3.8 64 113-184 47-110 (113)
17 PLN00411 nodulin MtN21 family 77.6 3.8 8.3E-05 38.3 4.8 62 117-185 272-333 (358)
18 PF00892 EamA: EamA-like trans 76.2 5 0.00011 29.5 4.2 61 111-178 64-124 (126)
19 TIGR00950 2A78 Carboxylate/Ami 73.2 23 0.0005 30.0 8.1 71 97-175 187-259 (260)
20 PF10639 UPF0546: Uncharacteri 72.9 18 0.0004 29.0 6.9 53 120-178 60-112 (113)
21 TIGR00776 RhaT RhaT L-rhamnose 69.4 7.6 0.00016 34.8 4.5 68 112-182 222-290 (290)
22 PF06027 DUF914: Eukaryotic pr 65.6 40 0.00087 31.6 8.6 61 118-185 250-310 (334)
23 PRK10532 threonine and homoser 55.9 51 0.0011 29.2 7.2 78 97-181 204-282 (293)
24 COG4975 GlcU Putative glucose 54.1 13 0.00028 34.3 3.1 70 110-182 69-138 (288)
25 PRK11453 O-acetylserine/cystei 51.4 22 0.00048 31.6 4.2 68 107-181 221-288 (299)
26 PRK11272 putative DMT superfam 48.0 51 0.0011 29.2 5.9 66 111-183 223-288 (292)
27 COG0697 RhaT Permeases of the 47.9 42 0.0009 28.2 5.1 78 102-186 72-149 (292)
28 COG0697 RhaT Permeases of the 47.3 75 0.0016 26.6 6.6 61 114-181 228-288 (292)
29 PF15048 OSTbeta: Organic solu 45.1 9 0.0002 31.5 0.6 32 149-181 26-57 (125)
30 PF11970 Git3_C: G protein-cou 43.2 25 0.00055 26.1 2.7 48 128-175 14-61 (76)
31 PRK13499 rhamnose-proton sympo 42.5 38 0.00083 32.0 4.4 75 105-180 78-153 (345)
32 PRK15430 putative chlorampheni 40.8 56 0.0012 29.0 5.0 51 109-163 222-272 (296)
33 PF08449 UAA: UAA transporter 40.4 50 0.0011 29.5 4.7 80 96-182 220-299 (303)
34 PF06800 Sugar_transport: Suga 40.1 1.2E+02 0.0026 27.8 7.1 103 70-177 162-268 (269)
35 PF11297 DUF3098: Protein of u 39.8 23 0.0005 26.2 2.0 36 157-192 4-40 (69)
36 TIGR00950 2A78 Carboxylate/Ami 39.8 88 0.0019 26.4 5.9 61 114-181 60-120 (260)
37 PF07457 DUF1516: Protein of u 38.0 65 0.0014 25.6 4.5 82 96-185 5-90 (110)
38 TIGR00881 2A0104 phosphoglycer 37.4 16 0.00034 31.4 1.0 16 47-62 49-64 (379)
39 PF08507 COPI_assoc: COPI asso 36.7 71 0.0015 25.6 4.6 19 160-178 85-103 (136)
40 PRK13499 rhamnose-proton sympo 36.1 18 0.0004 34.1 1.2 39 142-181 304-342 (345)
41 KOG2922 Uncharacterized conser 35.4 1E+02 0.0022 29.4 5.9 106 69-186 32-142 (335)
42 PRK15430 putative chlorampheni 29.4 1.7E+02 0.0036 26.0 6.2 74 98-178 70-143 (296)
43 PF08733 PalH: PalH/RIM21; In 28.8 28 0.00062 32.6 1.2 53 38-90 93-145 (348)
44 PF05814 DUF843: Baculovirus p 28.5 1E+02 0.0022 23.8 3.9 31 90-120 18-48 (83)
45 PF01235 Na_Ala_symp: Sodium:a 28.2 40 0.00087 32.6 2.1 76 99-179 311-389 (416)
46 TIGR00817 tpt Tpt phosphate/ph 27.5 49 0.0011 29.2 2.4 59 120-185 240-298 (302)
47 PF04018 DUF368: Domain of unk 27.1 2E+02 0.0044 26.1 6.3 70 101-175 58-127 (257)
48 PF07857 DUF1632: CEO family ( 26.6 1.3E+02 0.0027 27.4 4.9 51 134-185 84-139 (254)
49 PF14018 DUF4234: Domain of un 25.1 1.6E+02 0.0035 20.9 4.4 27 101-127 5-31 (75)
50 PF02038 ATP1G1_PLM_MAT8: ATP1 24.4 19 0.00041 25.2 -0.6 25 158-182 13-37 (50)
51 PF05653 Mg_trans_NIPA: Magnes 23.4 1.1E+02 0.0023 28.1 3.9 58 120-184 69-126 (300)
52 PF06379 RhaT: L-rhamnose-prot 23.4 1.7E+02 0.0038 27.9 5.3 79 100-179 258-339 (344)
53 PRK03557 zinc transporter ZitB 21.2 1.5E+02 0.0034 26.9 4.5 42 137-180 165-207 (312)
54 PF04184 ST7: ST7 protein; In 20.5 92 0.002 31.4 3.0 39 115-153 20-67 (539)
55 PRK11689 aromatic amino acid e 20.0 2.1E+02 0.0045 25.3 5.0 63 109-179 224-286 (295)
No 1
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.9e-48 Score=351.28 Aligned_cols=167 Identities=56% Similarity=0.903 Sum_probs=163.0
Q ss_pred cCcchhhhhHHHHHHHHhhheeeecccCcceeEEEEEEecccCCeeeehhHHHHHHHHHHhcCCcccchhHHHHHHHHHH
Q 027613 29 NGASFSSVCSFGSSCSFCTRRSILPEYGQTHVMVYIGVCSLVGSLSVMSVKALGIALKLTFEGMNQLIYPQTWIFTMIVL 108 (221)
Q Consensus 29 ~~~~~~~y~~~~~~~~l~Li~~~~pr~G~~~ilvyi~IcsllGs~TVl~~K~~~~llk~t~~G~nqf~~~~tyv~li~lv 108 (221)
..|+|++|+.+.++...+++++++||+|++|+++|+++||++||+||+++|++|+++|++++|+||+.||+||+++++++
T Consensus 155 ~~~~Fliy~~~iil~~~il~~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~ 234 (335)
T KOG2922|consen 155 TEPGFLVYVIIIILIVLILIFFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVA 234 (335)
T ss_pred cCccHHHHHHHHHHHHHHHheeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEecccCCCCCCC
Q 027613 109 VCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDAVDGS 188 (221)
Q Consensus 109 v~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~k~~~~~~ 188 (221)
.|+++|++|||||||+|||++|.|+|||+||+++|++|+|+||||++++..|+.+++|||++++.|+|+|+++||.+.+.
T Consensus 235 ~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd~~~~~ 314 (335)
T KOG2922|consen 235 TCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKDMEISL 314 (335)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Ccccccc
Q 027613 189 SASIQMR 195 (221)
Q Consensus 189 ~~~~~~~ 195 (221)
.++.+++
T Consensus 315 ~s~~~~~ 321 (335)
T KOG2922|consen 315 ASYNSMS 321 (335)
T ss_pred ccccccc
Confidence 8777665
No 2
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=2.1e-42 Score=312.30 Aligned_cols=161 Identities=38% Similarity=0.695 Sum_probs=156.3
Q ss_pred ccCcchhhhhHHHHHHHHhhheeeecccCcceeEEEEEEecccCCeeeehhHHHHHHHHHHhcCCcccchhHHHHHHHHH
Q 027613 28 CNGASFSSVCSFGSSCSFCTRRSILPEYGQTHVMVYIGVCSLVGSLSVMSVKALGIALKLTFEGMNQLIYPQTWIFTMIV 107 (221)
Q Consensus 28 ~~~~~~~~y~~~~~~~~l~Li~~~~pr~G~~~ilvyi~IcsllGs~TVl~~K~~~~llk~t~~G~nqf~~~~tyv~li~l 107 (221)
..+|+|+.|..+.+++.+.++++..||+|+||+++|+++||++||+||+++|+++++++++++|+|||.||.+|++++++
T Consensus 140 ~~~~~fl~y~~~~~~~~~~L~~~~~~r~g~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~ 219 (300)
T PF05653_consen 140 LSQPGFLVYFILVLVLILILIFFIKPRYGRRNILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVL 219 (300)
T ss_pred hcCcceehhHHHHHHHHHHHHHhhcchhcccceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEecccCCCCCC
Q 027613 108 LVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDAVDG 187 (221)
Q Consensus 108 vv~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~k~~~~~ 187 (221)
++|+++|++||||||++||+++|+|+||++||++++++|+|+||||+++++++++++++|+++++.||++|+.+||++++
T Consensus 220 v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~~~~ 299 (300)
T PF05653_consen 220 VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDKEIS 299 (300)
T ss_pred HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred C
Q 027613 188 S 188 (221)
Q Consensus 188 ~ 188 (221)
+
T Consensus 300 ~ 300 (300)
T PF05653_consen 300 Q 300 (300)
T ss_pred C
Confidence 3
No 3
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=94.76 E-value=0.054 Score=42.91 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=60.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhh
Q 027613 93 NQLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTIL 172 (221)
Q Consensus 93 nqf~~~~tyv~li~lvv~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~ 172 (221)
+.|+++.+.+. .+++...-+.+|.+|++..+-++.+|+-=..=+..+.+.|.++|+| ..++.++ .|..+++
T Consensus 25 ~gf~~~~~~i~---~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e--~~~~~~~----~gi~lIi 95 (110)
T PRK09541 25 EGFTRLWPSVG---TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ--RLDLPAI----IGMMLIC 95 (110)
T ss_pred cCCCchhHHHH---HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCC--CCCHHHH----HHHHHHH
Confidence 45777777663 4566677788999999999877766665555556677789999998 4455554 5777899
Q ss_pred heeeEecccCC
Q 027613 173 SGTFLLHKTKD 183 (221)
Q Consensus 173 ~GV~LLs~~k~ 183 (221)
.||.+|+...+
T Consensus 96 ~GVi~l~l~~~ 106 (110)
T PRK09541 96 AGVLVINLLSR 106 (110)
T ss_pred HHHHHHhcCCC
Confidence 99999976543
No 4
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=94.57 E-value=0.06 Score=43.65 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhh-hhhhccCCCCchhHHHHHHHHHHhhheeeEecccCCC
Q 027613 106 IVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASV-IMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDA 184 (221)
Q Consensus 106 ~lvv~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~-IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~k~~ 184 (221)
.-+++-..-....+.+|+.-|.+...|+....+....+.+-. ++|+| ..++.+ ..|..+++.||++++..+++
T Consensus 53 lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E--~ls~~~----~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 53 LGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNE--TFSLKK----TLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCHHH----HHHHHHHHHHHHHhccCCCC
Confidence 444556667788899999999999999988877555555544 48888 445544 56888899999999865543
No 5
>PRK11431 multidrug efflux system protein; Provisional
Probab=94.34 E-value=0.088 Score=41.45 Aligned_cols=81 Identities=12% Similarity=0.237 Sum_probs=55.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhh
Q 027613 93 NQLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTIL 172 (221)
Q Consensus 93 nqf~~~~tyv~li~lvv~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~ 172 (221)
+.|+++.++++. +++...=.++|.+|++.-+.++.+++.=..=+..+.+.|.++|+| ..++.++ +|+..++
T Consensus 24 ~gf~~~~~~~~~---i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e--~~~~~~~----~gi~lIi 94 (105)
T PRK11431 24 HGFSRLTPSIIT---VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGE--SASPARL----LSLALIV 94 (105)
T ss_pred hCCccHHHHHHH---HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCC--CCCHHHH----HHHHHHH
Confidence 568888777654 555666788999999987755544443333345555678889998 4555554 5677899
Q ss_pred heeeEecccC
Q 027613 173 SGTFLLHKTK 182 (221)
Q Consensus 173 ~GV~LLs~~k 182 (221)
.||.+|+..+
T Consensus 95 ~GVv~l~l~~ 104 (105)
T PRK11431 95 AGIIGLKLST 104 (105)
T ss_pred HHHHhhhccC
Confidence 9999886543
No 6
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=93.79 E-value=0.16 Score=39.93 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=58.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhhe
Q 027613 95 LIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSG 174 (221)
Q Consensus 95 f~~~~tyv~li~lvv~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~G 174 (221)
+++|.........+++...-...+-++++.-|.++..|+-+ .=...+.+.|..+|+| +.++.++ .|..+++.|
T Consensus 31 ~~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E--~ls~~~~----~Gi~lii~G 103 (111)
T PRK15051 31 KRRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHE--PVSPRHW----CGVAFIIGG 103 (111)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCC--CCCHHHH----HHHHHHHHH
Confidence 45554444444445566667788999999999999999998 5566677888999998 5676665 466677788
Q ss_pred eeEeccc
Q 027613 175 TFLLHKT 181 (221)
Q Consensus 175 V~LLs~~ 181 (221)
|.+++++
T Consensus 104 v~~i~~~ 110 (111)
T PRK15051 104 IVILGST 110 (111)
T ss_pred HHHHhcc
Confidence 8777653
No 7
>COG2510 Predicted membrane protein [Function unknown]
Probab=93.57 E-value=0.53 Score=39.18 Aligned_cols=82 Identities=22% Similarity=0.334 Sum_probs=53.9
Q ss_pred HhcCCcccc---hhHHHHH--HHHHHHHHHHHHHHHHHHhcccCceeeccc--hhhhhHHHHhhhhhhhhhccCCCCchh
Q 027613 88 TFEGMNQLI---YPQTWIF--TMIVLVCVITQMNYLNKALDTFNTAVVSPI--YYVMFTSLTILASVIMFKDWDRQNPTQ 160 (221)
Q Consensus 88 t~~G~nqf~---~~~tyv~--li~lvv~av~Ql~yLNkAL~~fdtsiVvPi--yyv~fTt~tIi~s~IlF~Ef~~~s~~~ 160 (221)
...|+-|-. .+-.|.+ +-.+...+--+.+| +||+.-+++.|+|+ .++.++ ++=|.++.+| +++..+
T Consensus 51 ~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf--~ALk~G~as~VvPldk~svvl~---~lls~lfL~E--~ls~~~ 123 (140)
T COG2510 51 LVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYF--RALKKGKASRVVPLDKTSVVLA---VLLSILFLGE--RLSLPT 123 (140)
T ss_pred HhcCceecccccCcceehhhhHHHHHHHHHHHHHH--HHHhcCCcceEEEcccccHHHH---HHHHHHHhcC--CCCHHH
Confidence 345665544 4444444 34444334444444 89999999999999 444443 3447778887 556555
Q ss_pred HHHHHHHHHHhhheeeEecc
Q 027613 161 IVTEICGFVTILSGTFLLHK 180 (221)
Q Consensus 161 ii~f~~G~lii~~GV~LLs~ 180 (221)
+ .|++.+.+|+.+++.
T Consensus 124 ~----iG~~LI~~Gailvs~ 139 (140)
T COG2510 124 W----IGIVLIVIGAILVSL 139 (140)
T ss_pred H----HHHHHHHhCeeeEec
Confidence 4 578889999999875
No 8
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=93.48 E-value=0.16 Score=40.90 Aligned_cols=72 Identities=19% Similarity=0.335 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEecccCC
Q 027613 106 IVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKD 183 (221)
Q Consensus 106 ~lvv~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~k~ 183 (221)
..+++...=+++|.+|++.-+-++.+|+.=..=+..+.+.|.++|+| ..+..+ .+|+.+++.||.+++...+
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E--~~s~~~----~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDE--SLSLMK----IAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCC--CCCHHH----HHHHHHHHHHHHHhhcCCC
Confidence 45566667788999999998888777765445556666788999998 445444 4677889999999876554
No 9
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=93.17 E-value=0.15 Score=40.47 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=55.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhh
Q 027613 93 NQLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTIL 172 (221)
Q Consensus 93 nqf~~~~tyv~li~lvv~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~ 172 (221)
+.|++|...+. .++....=.++|.+|+|.-+-++.+|+-=..=+..+.+.|.++|+| ..++.++ .|+.+++
T Consensus 30 ~gf~~~~~~~~---~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e--~~~~~~~----~gi~lIi 100 (109)
T PRK10650 30 DGFRRKIYGIL---SLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQ--RLNRKGW----IGLVLLL 100 (109)
T ss_pred cCCcchHHHHH---HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCC--CCCHHHH----HHHHHHH
Confidence 56787777553 3555566678999999987776665555555556677789999998 4455554 5677788
Q ss_pred heeeEec
Q 027613 173 SGTFLLH 179 (221)
Q Consensus 173 ~GV~LLs 179 (221)
.||.+|+
T Consensus 101 ~GVi~lk 107 (109)
T PRK10650 101 AGMVMIK 107 (109)
T ss_pred HHHHHhc
Confidence 8888774
No 10
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=91.59 E-value=0.36 Score=36.60 Aligned_cols=68 Identities=13% Similarity=0.083 Sum_probs=33.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHH
Q 027613 93 NQLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEI 165 (221)
Q Consensus 93 nqf~~~~tyv~li~lvv~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~ 165 (221)
+.++++..++. .+.+-..-+.++.+|++.-|.++..|+.-..=+..+.+.|..+|+| ..++.++++..
T Consensus 24 ~g~~~~~~~~~---~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E--~~s~~~~~gi~ 91 (93)
T PF00893_consen 24 HGFTQLIPTIL---AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGE--SLSLSKWLGIG 91 (93)
T ss_dssp ----------H---HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH----------HHHHH
T ss_pred HhhcchhhHHH---HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCC--CCCHHHHhhee
Confidence 45666655543 3346666778999999999999999998877778888899999998 56777766543
No 11
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=90.95 E-value=0.49 Score=41.70 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEec
Q 027613 100 TWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLH 179 (221)
Q Consensus 100 tyv~li~lvv~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs 179 (221)
.|..++............+++|+++=|++.+.|+.|.. -..+.+-|.++++| +.+..+++ |..+.+.|++++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~-p~~~~l~~~~~~~e--~~~~~~~~----g~~~~~~Gv~ll~ 134 (281)
T TIGR03340 62 FWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSS-PLLVAIWATLTLGE--TLSPLAWL----GILIITLGLLVLG 134 (281)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhh-HHHHHHHHHHHHcC--CCCHHHHH----HHHHHHHHHHHHh
Confidence 34444455556667777899999999999999999987 66777778888998 46777765 5556668887776
Q ss_pred cc
Q 027613 180 KT 181 (221)
Q Consensus 180 ~~ 181 (221)
..
T Consensus 135 ~~ 136 (281)
T TIGR03340 135 LS 136 (281)
T ss_pred cc
Confidence 44
No 12
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=87.85 E-value=2.3 Score=38.17 Aligned_cols=72 Identities=22% Similarity=0.386 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEecccCCC
Q 027613 110 CVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDA 184 (221)
Q Consensus 110 ~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~k~~ 184 (221)
-++.|+-|. .|.+.=+.++-.|++++.=-+.+.+.|.++|+|+. +..+......|+++++.|+++++..+++
T Consensus 69 w~ig~~~~~-~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~--t~~~~~~~~~g~~l~l~G~~l~~~~~~~ 140 (290)
T TIGR00776 69 WALGQINQF-KSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWS--TSIQTLLGLLALILIIIGVYLTSRSKDK 140 (290)
T ss_pred HHhhhhhHH-HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHhHheEEecccc
Confidence 444555554 56777777778888886555577788999999987 5667777899999999999999877644
No 13
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=87.72 E-value=3.6 Score=37.60 Aligned_cols=91 Identities=19% Similarity=0.255 Sum_probs=63.2
Q ss_pred cccc-hhHHH-HHHHHHHHHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHH
Q 027613 93 NQLI-YPQTW-IFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVT 170 (221)
Q Consensus 93 nqf~-~~~ty-v~li~lvv~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~li 170 (221)
.++. ++..| +-++.=+.-++-|+.-+ ++.+.-.-+.-.|+-=.+=-..+.+.|.++|+||.+ ..+.+.=+.++++
T Consensus 36 p~~~~~~~~~~~~~lsG~~W~iGq~~qf-~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~--~~~~~~G~~Al~l 112 (269)
T PF06800_consen 36 PAFSMSGTSFIVAFLSGAFWAIGQIGQF-KSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTT--TTQKIIGFLALVL 112 (269)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCC--cchHHHHHHHHHH
Confidence 4454 23333 33444445566676655 788888889999997766667777889999999995 4555555668899
Q ss_pred hhheeeEecccCCCCC
Q 027613 171 ILSGTFLLHKTKDAVD 186 (221)
Q Consensus 171 i~~GV~LLs~~k~~~~ 186 (221)
++.|+.+-+.++++++
T Consensus 113 iiiGv~lts~~~~~~~ 128 (269)
T PF06800_consen 113 IIIGVILTSYQDKKSD 128 (269)
T ss_pred HHHHHHHhcccccccc
Confidence 9999987665554443
No 14
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=85.26 E-value=2.7 Score=36.95 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEe
Q 027613 105 MIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLL 178 (221)
Q Consensus 105 i~lvv~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LL 178 (221)
...+.+++ -....|+|+++-+++.+.|..|.. -..+++-|.++++|- .++. -..|..+++.|+.+|
T Consensus 216 ~~~~~s~l-~~~l~~~al~~~~a~~~~~~~~l~-pv~a~l~g~~~lgE~--~~~~----~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 216 LGGLMIGG-AYALVLWAMTRLPVATVVALRNTS-IVFAVVLGIWFLNER--WYLT----RLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHH-HHHHHHHHHhhCCceEEEeecccH-HHHHHHHHHHHhCCC--ccHH----HHHHHHHHHHhHHhC
Confidence 33344444 344678999999999999999875 566667788888983 3443 445667788888764
No 15
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=83.70 E-value=1.4 Score=35.03 Aligned_cols=75 Identities=24% Similarity=0.286 Sum_probs=51.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCceeeccchhhhhHH----HHhhhhhhhhhccCCCCchhHHHHHHHHH
Q 027613 94 QLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTS----LTILASVIMFKDWDRQNPTQIVTEICGFV 169 (221)
Q Consensus 94 qf~~~~tyv~li~lvv~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt----~tIi~s~IlF~Ef~~~s~~~ii~f~~G~l 169 (221)
.|+++..++ +++++...-..+|-+|++.=|-.+ -|..|+- .+.+.|.++|+| ..++.++ .|+.
T Consensus 26 gf~~~~~~i---l~~v~~~~sf~~Ls~alk~ipvgv----AYAiW~GiG~v~~~l~g~~~f~E--~l~~~~~----~gl~ 92 (106)
T COG2076 26 GFTRLWPSI---LTIVGYGLSFYLLSLALKTIPLGV----AYAIWTGIGIVGTALVGVLLFGE--SLSLIKL----LGLA 92 (106)
T ss_pred cccccchHH---HHHHHHHHHHHHHHHHHhhCchHH----HHHHHHHHHHHHHHHHHHHhcCC--cCCHHHH----HHHH
Confidence 355555544 445566677889999999866544 5666654 455688999998 3455444 5677
Q ss_pred HhhheeeEeccc
Q 027613 170 TILSGTFLLHKT 181 (221)
Q Consensus 170 ii~~GV~LLs~~ 181 (221)
+++.||..|+..
T Consensus 93 LiiaGvi~Lk~~ 104 (106)
T COG2076 93 LILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHhhhc
Confidence 788999887654
No 16
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=80.47 E-value=2.5 Score=32.37 Aligned_cols=64 Identities=25% Similarity=0.312 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEecccCCC
Q 027613 113 TQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDA 184 (221)
Q Consensus 113 ~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~k~~ 184 (221)
...-....|++.-+ ..+.|+++ .....+.+-|.++|+| +.++.++ .|.+++++||.++..++..
T Consensus 47 ~~~~~~~~a~~~~~-~~v~~i~~-~~pi~~~ll~~~~~~e--r~~~~~~----~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 47 VAYLLFFYALSYAP-ALVAAIFS-LSPIFTALLSWLFFKE--RLSPRRW----LAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHhCc-HHHHHHHH-HHHHHHHHHHHHHhcC--CCCHHHH----HHHHHHHHHHHHHhhhhcc
Confidence 44555668888888 56666655 5778888889999997 5666654 4667788899888766544
No 17
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=77.57 E-value=3.8 Score=38.31 Aligned_cols=62 Identities=10% Similarity=0.045 Sum_probs=43.8
Q ss_pred HHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEecccCCCC
Q 027613 117 YLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDAV 185 (221)
Q Consensus 117 yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~k~~~ 185 (221)
.-|+++++-+++.+....|.. -.++.+.|.++++| ..++.+ +.|.++++.|+++.+..|.+|
T Consensus 272 lw~~~v~~~ga~~as~~~~L~-PV~a~llg~l~LgE--~lt~~~----~iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 272 IHSWTVRHKGPLYLAIFKPLS-ILIAVVMGAIFLND--SLYLGC----LIGGILITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHhccCchHHHHHHhHH-HHHHHHHHHHHhCC--CCcHHH----HHHHHHHHHHHHHHHhhhhhh
Confidence 489999999988776655543 44566677777887 345444 468888999999887655444
No 18
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=76.15 E-value=5 Score=29.48 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEe
Q 027613 111 VITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLL 178 (221)
Q Consensus 111 av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LL 178 (221)
...-....++|+++-+++.+.++.+ .-...+.+.+.++++|- .++.++ .|..+++.|++++
T Consensus 64 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~pv~~~i~~~~~~~e~--~~~~~~----~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 64 TALAYLLYFYALKYISASIVSILQY-LSPVFAAILGWLFLGER--PSWRQI----IGIILIIIGVVLI 124 (126)
T ss_pred eehHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHcCCC--CCHHHH----HHHHHHHHHHHHH
Confidence 3445566789999999999999988 67778888888999884 455544 4555666666543
No 19
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=73.22 E-value=23 Score=30.02 Aligned_cols=71 Identities=13% Similarity=0.268 Sum_probs=45.6
Q ss_pred hhHHH--HHHHHHHHHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhhe
Q 027613 97 YPQTW--IFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSG 174 (221)
Q Consensus 97 ~~~ty--v~li~lvv~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~G 174 (221)
.+..| ++....+.+.+.+.-| ++|+++-+++.+..+.|. -...+.+-+.++++| ..++.++ .|..+++.|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~s~~~~~-~pv~~~ll~~~~~~E--~~~~~~~----~G~~li~~g 258 (260)
T TIGR00950 187 LSLQWGALLYLGLIGTALAYFLW-NKGLTLVDPSAASILALA-EPLVALLLGLLILGE--TLSLPQL----IGGALIIAA 258 (260)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCchHHHHHHHH-HHHHHHHHHHHHhCC--CCCHHHH----HHHHHHHHh
Confidence 44455 3334444455555544 899999999999888884 455566667777887 4455554 455556666
Q ss_pred e
Q 027613 175 T 175 (221)
Q Consensus 175 V 175 (221)
+
T Consensus 259 ~ 259 (260)
T TIGR00950 259 V 259 (260)
T ss_pred c
Confidence 4
No 20
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=72.87 E-value=18 Score=28.97 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=43.8
Q ss_pred HHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEe
Q 027613 120 KALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLL 178 (221)
Q Consensus 120 kAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LL 178 (221)
-.|...|=++.+|+-...--.+|.++|.++.+|... . --..|+..++.||.+.
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~--~----~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVIS--R----RTWLGMALILAGVALC 112 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccc--h----hHHHHHHHHHcCeeee
Confidence 478999999999999888888899999999988642 2 2367888999999874
No 21
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=69.35 E-value=7.6 Score=34.82 Aligned_cols=68 Identities=9% Similarity=0.115 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhc-ccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEecccC
Q 027613 112 ITQMNYLNKALD-TFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTK 182 (221)
Q Consensus 112 v~Ql~yLNkAL~-~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~k 182 (221)
..+.-...++++ .=+++.-.++-+.= -..+.+.|..+++|- .++.|+..+..|+++++.|+.++...|
T Consensus 222 ~ia~~~y~~~~~~~~~~~~~~~ls~~~-pvia~~~~v~~l~E~--~~~~~~~~~~iG~~lIi~~~~l~~~~~ 290 (290)
T TIGR00776 222 GIGNFFYLFSAQPKVGVATSFSLSQLG-VIISTLGGILILGEK--KTKREMIAISVGIILIIIAANILGIGK 290 (290)
T ss_pred HHHHHHHHHHcccccchhhHHHHHHHH-HHHHHHHHHHHhccC--CCcceeehhHHHHHHHHHHHHHHhccC
Confidence 555555667777 44444444444444 677778889999985 588999999999999999999876543
No 22
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=65.64 E-value=40 Score=31.59 Aligned_cols=61 Identities=10% Similarity=0.080 Sum_probs=36.8
Q ss_pred HHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEecccCCCC
Q 027613 118 LNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDAV 185 (221)
Q Consensus 118 LNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~k~~~ 185 (221)
.+-.++.=+++.++. ---.-..-+++.+.++|++. .++ ..+.|++++++|+++.+...+++
T Consensus 250 ~p~~l~~ssAt~~nL-sLLTsd~~ali~~i~~f~~~--~~~----ly~~af~lIiiG~vvy~~~~~~~ 310 (334)
T PF06027_consen 250 VPIVLRMSSATFFNL-SLLTSDFYALIIDIFFFGYK--FSW----LYILAFALIIIGFVVYNLAESPE 310 (334)
T ss_pred HHHHHHhCccceeeh-HHHHhhHHHHHHHHHhcCcc--ccH----HHHHHHHHHHHHhheEEccCCcc
Confidence 344455555554333 22333334566777778763 233 36688899999999988666544
No 23
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=55.86 E-value=51 Score=29.24 Aligned_cols=78 Identities=10% Similarity=0.047 Sum_probs=50.5
Q ss_pred hhHHHHH-HHHHHHHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhhee
Q 027613 97 YPQTWIF-TMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGT 175 (221)
Q Consensus 97 ~~~tyv~-li~lvv~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV 175 (221)
++..|.. +...+++.+.+....|+++++-+++.+.++.|.-= ..+++-|.++++|- .++.++ .|..+++.|+
T Consensus 204 ~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~P-v~a~l~~~l~lgE~--~~~~~~----iG~~lIl~~~ 276 (293)
T PRK10532 204 HWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEP-ALAAVSGMIFLGET--LTLIQW----LALGAIIAAS 276 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHH-HHHHHHHHHHhCCC--CcHHHH----HHHHHHHHHH
Confidence 4445532 34445556677777899999999998888777654 44555666778873 455554 4555666666
Q ss_pred eEeccc
Q 027613 176 FLLHKT 181 (221)
Q Consensus 176 ~LLs~~ 181 (221)
.+.+..
T Consensus 277 ~~~~~~ 282 (293)
T PRK10532 277 MGSTLT 282 (293)
T ss_pred HHHHhc
Confidence 665443
No 24
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=54.10 E-value=13 Score=34.27 Aligned_cols=70 Identities=29% Similarity=0.421 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEecccC
Q 027613 110 CVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTK 182 (221)
Q Consensus 110 ~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~k 182 (221)
=.+-|++=+ ||.++-..+.-.|+---+==..+-+-|.+.|+||. ++.+++.=.....+++.|+++=+..+
T Consensus 69 Ws~GQ~~Qf-ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~--t~~~~IlG~iAliliviG~~lTs~~~ 138 (288)
T COG4975 69 WSFGQANQF-KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWT--TPTQIILGFIALILIVIGIYLTSKQD 138 (288)
T ss_pred hhhhhhhhh-hheeeeeeeccccccchhhHhhceeeeEEEEeccC--cchhHHHHHHHHHHHHHhheEeeeec
Confidence 345677776 78888888889999776666677778899999998 45666666667778999998855443
No 25
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=51.41 E-value=22 Score=31.56 Aligned_cols=68 Identities=16% Similarity=0.291 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEeccc
Q 027613 107 VLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKT 181 (221)
Q Consensus 107 lvv~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~ 181 (221)
.+++.+.+....|+++++.+++.+.++.+ +-=..+++-|.++++|- .++.+ ..|..+++.|+++....
T Consensus 221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~-l~Pv~a~~~~~l~lgE~--~~~~~----~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 221 AFVATIVGYGIWGTLLGRYETWRVAPLSL-LVPVVGLASAALLLDER--LTGLQ----FLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHhCCC--ccHHH----HHHHHHHHHHHHHHhcc
Confidence 34566667777899999999988887665 33456677778888873 44444 56777888888775433
No 26
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=47.97 E-value=51 Score=29.15 Aligned_cols=66 Identities=15% Similarity=0.095 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEecccCC
Q 027613 111 VITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKD 183 (221)
Q Consensus 111 av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~k~ 183 (221)
.+.-....|+++++-+++.+..+.|.-=.. +.+-|.++++|- .++.+ +.|..+++.|+++++..+.
T Consensus 223 s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~-a~i~~~~~l~E~--~t~~~----iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 223 SIIAISAYMYLLRNVRPALATSYAYVNPVV-AVLLGTGLGGET--LSPIE----WLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHH-HHHHHHHHcCCC--CcHHH----HHHHHHHHHHHHHHHHHHh
Confidence 344455778999999998888876655444 444556667763 44444 5678889999988876443
No 27
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=47.92 E-value=42 Score=28.22 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEeccc
Q 027613 102 IFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKT 181 (221)
Q Consensus 102 v~li~lvv~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~ 181 (221)
.++........ -....+.|++.-+.+...++++..-....+++..++++| +.+..++.+ .++.+.|+.++...
T Consensus 72 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e--~~~~~~~~~----~~~~~~Gv~lv~~~ 144 (292)
T COG0697 72 LLLLALLGLAL-PFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGE--RLSLLQILG----ILLALAGVLLILLG 144 (292)
T ss_pred HHHHHHHHHHH-HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccC--CCcHHHHHH----HHHHHHhHHheecC
Confidence 33333333333 334445678888888888888887777777777666687 345555544 66778999998876
Q ss_pred CCCCC
Q 027613 182 KDAVD 186 (221)
Q Consensus 182 k~~~~ 186 (221)
...+.
T Consensus 145 ~~~~~ 149 (292)
T COG0697 145 GGGGG 149 (292)
T ss_pred CCcch
Confidence 66543
No 28
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=47.31 E-value=75 Score=26.65 Aligned_cols=61 Identities=16% Similarity=0.250 Sum_probs=41.2
Q ss_pred HHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEeccc
Q 027613 114 QMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKT 181 (221)
Q Consensus 114 Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~ 181 (221)
-....+++++.-+++.+.|+.|. -...+++-+.++++|- .+..+++ |..+++.|+.+....
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~l~~~e~--~~~~~~~----G~~li~~g~~l~~~~ 288 (292)
T COG0697 228 AYLLWYYALRLLGASLVALLSLL-EPVFAALLGVLLLGEP--LSPAQLL----GAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHhcCchHHHHHHHH-HHHHHHHHHHHHhCCC--CcHHHHH----HHHHHHHHHHHHhcc
Confidence 44455799999999999998733 3334444677788874 3444444 447788888777655
No 29
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=45.07 E-value=9 Score=31.48 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=26.6
Q ss_pred hhhccCCCCchhHHHHHHHHHHhhheeeEeccc
Q 027613 149 MFKDWDRQNPTQIVTEICGFVTILSGTFLLHKT 181 (221)
Q Consensus 149 lF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~ 181 (221)
||+- ++-++|++.++.+.++++++|++||.++
T Consensus 26 ~fR~-ED~tpWNysiL~Ls~vvlvi~~~LLgrs 57 (125)
T PF15048_consen 26 FFRV-EDATPWNYSILALSFVVLVISFFLLGRS 57 (125)
T ss_pred heec-CCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3443 4568999999999999999999999765
No 30
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=43.15 E-value=25 Score=26.13 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=40.3
Q ss_pred eeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhhee
Q 027613 128 AVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGT 175 (221)
Q Consensus 128 siVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV 175 (221)
..+.|+.|++-.++=++.+..-|.+..+.++...+..+.|++..+.|.
T Consensus 14 mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~ 61 (76)
T PF11970_consen 14 MFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGF 61 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCH
Confidence 467899999999988888888888777778888888888888888774
No 31
>PRK13499 rhamnose-proton symporter; Provisional
Probab=42.53 E-value=38 Score=32.00 Aligned_cols=75 Identities=12% Similarity=0.099 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccC-CCCchhHHHHHHHHHHhhheeeEecc
Q 027613 105 MIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWD-RQNPTQIVTEICGFVTILSGTFLLHK 180 (221)
Q Consensus 105 i~lvv~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~-~~s~~~ii~f~~G~lii~~GV~LLs~ 180 (221)
+.=+.-.+-|+.+. ++.++---++-.|+---+=...+.+-+.++|+||+ .++..+....+.|.+++++|+.+-+.
T Consensus 78 l~G~~W~iG~i~~~-~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 78 LFGALWGIGGITYG-LTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHHHhhhhhHH-HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 33444566677665 67788888888898777777777788999999997 22444555588999999999998776
No 32
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=40.80 E-value=56 Score=29.01 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHH
Q 027613 109 VCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVT 163 (221)
Q Consensus 109 v~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~ 163 (221)
.+++.|. ..|+|+++.+++.+.|+.|.-=..+ ++-|.++++|- .++.++++
T Consensus 222 ~t~i~~~-~~~~a~~~~~a~~~s~~~~l~Pv~a-~~~g~l~l~E~--~~~~~~~G 272 (296)
T PRK15430 222 VTTVPLL-CFTAAATRLRLSTLGFFQYIGPTLM-FLLAVTFYGEK--PGADKMVT 272 (296)
T ss_pred HHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHHHHcCC--CCHHHHHH
Confidence 5666666 8899999999999999888766554 45566778874 45544443
No 33
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=40.43 E-value=50 Score=29.48 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=49.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhhee
Q 027613 96 IYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGT 175 (221)
Q Consensus 96 ~~~~tyv~li~lvv~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV 175 (221)
.||..+..++....+...=..+.+.-.+.+++....=+ =..=...+++-|.++|++ .+++.++++. ++++.|+
T Consensus 220 ~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v-~t~Rk~~sillS~~~f~~--~~~~~~~~G~----~lv~~g~ 292 (303)
T PF08449_consen 220 AHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIV-TTLRKFLSILLSVIIFGH--PLSPLQWIGI----VLVFAGI 292 (303)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhH-HHHHHHHHHHHHHHhcCC--cCChHHHHHH----HHhHHHH
Confidence 56666666655555555545566777788776544332 222245677788899974 7788777654 4566666
Q ss_pred eEecccC
Q 027613 176 FLLHKTK 182 (221)
Q Consensus 176 ~LLs~~k 182 (221)
.+=+..|
T Consensus 293 ~~~~~~~ 299 (303)
T PF08449_consen 293 FLYSYAK 299 (303)
T ss_pred HHHHHhh
Confidence 5544333
No 34
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=40.10 E-value=1.2e+02 Score=27.79 Aligned_cols=103 Identities=14% Similarity=0.265 Sum_probs=56.7
Q ss_pred cCCeeeehhHHHHHHHHHHhc---CCcccchhHHHHHHHHHHHHHHHH-HHHHHHHhcccCceeeccchhhhhHHHHhhh
Q 027613 70 VGSLSVMSVKALGIALKLTFE---GMNQLIYPQTWIFTMIVLVCVITQ-MNYLNKALDTFNTAVVSPIYYVMFTSLTILA 145 (221)
Q Consensus 70 lGs~TVl~~K~~~~llk~t~~---G~nqf~~~~tyv~li~lvv~av~Q-l~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~ 145 (221)
+.+.+.+.-.++|.++-...- .++++.+..+|.=++.=+.-.+.= .+++.- +.=--+.=.|+-|.- ...+.++
T Consensus 162 ~~~~~~~lPqaiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~w~ignl~~~is~--~~~G~a~af~lSQ~~-vvIStlg 238 (269)
T PF06800_consen 162 VSGWSAFLPQAIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLIWGIGNLFYLISA--QKNGVATAFTLSQLG-VVISTLG 238 (269)
T ss_pred CChhHhHHHHHHHHHHHHHHHhhcccccccccchHHhhHHHHHHHHHHHHHHHhH--HhccchhhhhHHhHH-HHHHHhh
Confidence 345666677777766654332 144444444543222111111111 122211 122222333444444 3345578
Q ss_pred hhhhhhccCCCCchhHHHHHHHHHHhhheeeE
Q 027613 146 SVIMFKDWDRQNPTQIVTEICGFVTILSGTFL 177 (221)
Q Consensus 146 s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~L 177 (221)
|+.++||.+ +..++...+.|+++++.|..+
T Consensus 239 GI~il~E~K--t~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 239 GIFILKEKK--TKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred hheEEEecC--chhhHHHHHHHHHHHHHhhhc
Confidence 999999987 778899999999999888765
No 35
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=39.84 E-value=23 Score=26.24 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=28.7
Q ss_pred CchhHHHHHHHHHHhhheeeEecccCCCC-CCCCccc
Q 027613 157 NPTQIVTEICGFVTILSGTFLLHKTKDAV-DGSSASI 192 (221)
Q Consensus 157 s~~~ii~f~~G~lii~~GV~LLs~~k~~~-~~~~~~~ 192 (221)
+-.+...+..|+++++.|-.+.+..++.+ ....|++
T Consensus 4 gk~Nyill~iG~~vIilGfilMsg~~s~dp~~fn~~I 40 (69)
T PF11297_consen 4 GKKNYILLAIGIAVIILGFILMSGGGSDDPNVFNPDI 40 (69)
T ss_pred chHHHHHHHHHHHHHHHHHHheeCCCCCCccccCccc
Confidence 45788999999999999999999988776 3344443
No 36
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=39.82 E-value=88 Score=26.45 Aligned_cols=61 Identities=18% Similarity=0.129 Sum_probs=41.4
Q ss_pred HHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEeccc
Q 027613 114 QMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKT 181 (221)
Q Consensus 114 Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~ 181 (221)
..-....|+++=+++...++ +...-..+.+-+.++++| +.+..+++ |.++.++|+.++...
T Consensus 60 ~~~~~~~a~~~~~~~~~~ii-~~~~P~~~~~~~~l~~~e--~~~~~~~~----gi~i~~~Gv~li~~~ 120 (260)
T TIGR00950 60 FYVLYFVAVKRLPVGEAALL-LYLAPLYVTLLSDLMGKE--RPRKLVLL----AAVLGLAGAVLLLSD 120 (260)
T ss_pred HHHHHHHHHHhcChhhhHHH-HhhhHHHHHHHHHHHccC--CCcHHHHH----HHHHHHHhHHhhccC
Confidence 33456899999887777555 455555666677788886 56766664 666667888777643
No 37
>PF07457 DUF1516: Protein of unknown function (DUF1516); InterPro: IPR010899 This family contains a number of hypothetical bacterial proteins of unknown function approximately 120 residues long.
Probab=37.97 E-value=65 Score=25.59 Aligned_cols=82 Identities=16% Similarity=0.289 Sum_probs=48.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcccCceeeccc---hhhhhHHHHhhhhhhhh-hccCCCCchhHHHHHHHHHHh
Q 027613 96 IYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPI---YYVMFTSLTILASVIMF-KDWDRQNPTQIVTEICGFVTI 171 (221)
Q Consensus 96 ~~~~tyv~li~lvv~av~Ql~yLNkAL~~fdtsiVvPi---yyv~fTt~tIi~s~IlF-~Ef~~~s~~~ii~f~~G~lii 171 (221)
.|-.+|++++++.+.+.. +++. -++....|. .-++|-. .+++|+.++ +++.+.+...++-+++|..++
T Consensus 5 ~Hi~sWvl~iIlf~~a~~----~~~~---g~~k~~k~~~MilRl~Yll-iiisG~~L~~~~~~~~~~l~~iK~l~gl~vI 76 (110)
T PF07457_consen 5 IHITSWVLLIILFIVAYF----LYSK---GKTKKAKILHMILRLFYLL-IIISGVWLFIRTFAGNPMLYIIKMLLGLIVI 76 (110)
T ss_pred HHHHHHHHHHHHHHHHHH----HHhc---ccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 467789888777766653 1111 111112222 2234444 445555555 459999999999999999877
Q ss_pred hheeeEecccCCCC
Q 027613 172 LSGTFLLHKTKDAV 185 (221)
Q Consensus 172 ~~GV~LLs~~k~~~ 185 (221)
-.-=..++++|+.+
T Consensus 77 ~lmEm~l~rkkk~k 90 (110)
T PF07457_consen 77 GLMEMALARKKKGK 90 (110)
T ss_pred HHHHHHHHHHHcCC
Confidence 66555556555543
No 38
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=37.43 E-value=16 Score=31.38 Aligned_cols=16 Identities=6% Similarity=-0.051 Sum_probs=11.8
Q ss_pred hheeeecccCcceeEE
Q 027613 47 TRRSILPEYGQTHVMV 62 (221)
Q Consensus 47 Li~~~~pr~G~~~ilv 62 (221)
..-++..|+|+|+.+.
T Consensus 49 ~~g~l~dr~g~r~~~~ 64 (379)
T TIGR00881 49 VMGSVSDRSNPRVFLP 64 (379)
T ss_pred hhhHHHHhhCCeehhH
Confidence 3457788999998655
No 39
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=36.67 E-value=71 Score=25.59 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHhhheeeEe
Q 027613 160 QIVTEICGFVTILSGTFLL 178 (221)
Q Consensus 160 ~ii~f~~G~lii~~GV~LL 178 (221)
.+...+.|.++.+.|+..+
T Consensus 85 ~~~~~i~g~~~~~~G~~~i 103 (136)
T PF08507_consen 85 SILSIIIGLLLFLVGVIYI 103 (136)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555666666665543
No 40
>PRK13499 rhamnose-proton symporter; Provisional
Probab=36.11 E-value=18 Score=34.13 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=32.6
Q ss_pred HhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEeccc
Q 027613 142 TILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKT 181 (221)
Q Consensus 142 tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~ 181 (221)
+.+.|+ +.|||++.+.........|+++++.|..++...
T Consensus 304 stlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 304 GNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 444566 599999999999999999999999999887543
No 41
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.37 E-value=1e+02 Score=29.38 Aligned_cols=106 Identities=21% Similarity=0.262 Sum_probs=66.2
Q ss_pred ccCCeeeehhHHHHHHHHHHh-cCCc---ccchhHHHHHHHHHHHHHHHHH-HHHHHHhcccCceeeccchhhhhHHHHh
Q 027613 69 LVGSLSVMSVKALGIALKLTF-EGMN---QLIYPQTWIFTMIVLVCVITQM-NYLNKALDTFNTAVVSPIYYVMFTSLTI 143 (221)
Q Consensus 69 llGs~TVl~~K~~~~llk~t~-~G~n---qf~~~~tyv~li~lvv~av~Ql-~yLNkAL~~fdtsiVvPiyyv~fTt~tI 143 (221)
.+|+...+-=|+.-.+-.... .|+. -+++|.-|. ++...++.++ || -|-..-++++|+|+-=.-.+.+++
T Consensus 32 ~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~---G~ltm~vGei~NF--aAYaFAPasLVtPLGAlsvi~sai 106 (335)
T KOG2922|consen 32 FIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWA---GMLTMIVGEIANF--AAYAFAPASLVTPLGALSVIISAI 106 (335)
T ss_pred EEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHH---HHHHHHHHhHhhH--HHHhhchHhhhccchhHHHHHHHH
Confidence 455544555555443332211 1222 244544444 4444444443 33 244556889999999999999999
Q ss_pred hhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEecccCCCCC
Q 027613 144 LASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDAVD 186 (221)
Q Consensus 144 i~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~k~~~~ 186 (221)
+++.++=+.++ ..=.+|+...+.|-.++=.+.+.+.
T Consensus 107 la~~~L~Ekl~-------~~g~lGc~l~v~Gst~iV~haP~e~ 142 (335)
T KOG2922|consen 107 LASFFLKEKLN-------LLGILGCVLCVVGSTTIVIHAPKEQ 142 (335)
T ss_pred HHHHHHHHHHH-------HhhhhheeEEecccEEEEEecCccc
Confidence 99999877665 3446799999999888766655543
No 42
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=29.42 E-value=1.7e+02 Score=25.97 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeE
Q 027613 98 PQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFL 177 (221)
Q Consensus 98 ~~tyv~li~lvv~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~L 177 (221)
+..+...+.-......+....+.|+++=+.+...-++| ..-..+.+.+.++++| +.+..++++..+|+ .||.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~-~~Pi~v~l~~~~~l~E--~~~~~~~~g~~l~~----~Gv~l 142 (296)
T PRK15430 70 PQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYF-INPLVNIVLGMIFLGE--RFRRMQWLAVILAI----CGVLV 142 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH-HHHHHHHHHHHHHhcC--CCcHHHHHHHHHHH----HHHHH
Confidence 33333333334445567778899999988888877766 4466677778888887 67888887666554 45544
Q ss_pred e
Q 027613 178 L 178 (221)
Q Consensus 178 L 178 (221)
+
T Consensus 143 i 143 (296)
T PRK15430 143 Q 143 (296)
T ss_pred H
Confidence 4
No 43
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=28.76 E-value=28 Score=32.65 Aligned_cols=53 Identities=8% Similarity=0.023 Sum_probs=32.7
Q ss_pred HHHHHHHHhhheeeecccCcceeEEEEEEecccCCeeeehhHHHHHHHHHHhc
Q 027613 38 SFGSSCSFCTRRSILPEYGQTHVMVYIGVCSLVGSLSVMSVKALGIALKLTFE 90 (221)
Q Consensus 38 ~~~~~~~l~Li~~~~pr~G~~~ilvyi~IcsllGs~TVl~~K~~~~llk~t~~ 90 (221)
..+++..+.++.+..|||++|..+.-++.-----.+|+..+|++..+-++--+
T Consensus 93 ~~V~~wmL~lll~l~P~~~~~~~L~k~~~l~~aI~lti~l~~~~~~~~~q~~~ 145 (348)
T PF08733_consen 93 SCVITWMLTLLLFLSPRHNRRPWLLKLAALLSAISLTIFLARSTKVLEEQYYN 145 (348)
T ss_pred HHHHHHHHHHHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455667777999999987765433222235667778887666555443
No 44
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=28.46 E-value=1e+02 Score=23.78 Aligned_cols=31 Identities=10% Similarity=0.198 Sum_probs=24.9
Q ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 027613 90 EGMNQLIYPQTWIFTMIVLVCVITQMNYLNK 120 (221)
Q Consensus 90 ~G~nqf~~~~tyv~li~lvv~av~Ql~yLNk 120 (221)
.+..-+.....+++++.++...+.|++|-|.
T Consensus 18 ~k~~~~s~li~~~LilfviF~~~L~~yy~kt 48 (83)
T PF05814_consen 18 DKNEGFSELIITLLILFVIFFCVLQVYYIKT 48 (83)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4444677778889999999999999999764
No 45
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=28.23 E-value=40 Score=32.65 Aligned_cols=76 Identities=17% Similarity=0.270 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-cCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhh--hee
Q 027613 99 QTWIFTMIVLVCVITQMNYLNKALDT-FNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTIL--SGT 175 (221)
Q Consensus 99 ~tyv~li~lvv~av~Ql~yLNkAL~~-fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~--~GV 175 (221)
.+-.+++.-..|++.+.+|-.++++. |+..-...+|.+.|....++++.. +. ...|++.-+..|++.+. +++
T Consensus 311 v~i~l~lFafTTilg~~~yge~~~~yl~~~~~~~~~~ri~~i~~~~~G~~~---~~--~~vW~~~Di~~~lmai~Nlial 385 (416)
T PF01235_consen 311 VAIALFLFAFTTILGWYYYGEKCAEYLFGGKKAIWIYRILFIAMVFIGAVI---DL--DLVWDLADIANGLMAIPNLIAL 385 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEeeeehhhhhhhhhhcc---cc--hhHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667888999999999988 546677778999999888888875 32 35788888888888765 455
Q ss_pred eEec
Q 027613 176 FLLH 179 (221)
Q Consensus 176 ~LLs 179 (221)
++|+
T Consensus 386 ~lL~ 389 (416)
T PF01235_consen 386 LLLS 389 (416)
T ss_pred HHhH
Confidence 5543
No 46
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=27.51 E-value=49 Score=29.21 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=37.3
Q ss_pred HHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEecccCCCC
Q 027613 120 KALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDAV 185 (221)
Q Consensus 120 kAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~k~~~ 185 (221)
+++++-+++...-. ..+=...+++-|.++++| ..++.++ .|..+++.|+++.+..|.++
T Consensus 240 ~~l~~~sa~t~sv~-~~l~pv~~~~~~~~~lge--~lt~~~~----~G~~lil~Gv~l~~~~k~~~ 298 (302)
T TIGR00817 240 MLLGRVSPLTHSVG-NCMKRVVVIVVSILFFGT--KISPQQV----FGTGIAIAGVFLYSRVKAQK 298 (302)
T ss_pred HHHccCCchHHHHH-hhhhhhheeeeehhhcCC--CCchhHH----HHHHHHHHHHHHHHHHhccC
Confidence 56776665554433 333344555667888888 3555554 56777889998887665443
No 47
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=27.07 E-value=2e+02 Score=26.09 Aligned_cols=70 Identities=16% Similarity=0.305 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhhee
Q 027613 101 WIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGT 175 (221)
Q Consensus 101 yv~li~lvv~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV 175 (221)
..+.+.+++.++.=-+-++-.++.|. .|++ .+|.-..+-+--..|||-++.++.+++.++.|+++.+.=.
T Consensus 58 ~~l~~G~~~gi~~~s~~i~~ll~~yp----~~t~-~fF~GLIlgSip~l~k~~~~~~~~~~~~~~~g~~i~~~~~ 127 (257)
T PF04018_consen 58 LPLGIGILIGILLFSKVISYLLENYP----IPTY-SFFFGLILGSIPFLYKEIKKFSPKSIIFFLLGAIIALLLS 127 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCH----HHHH-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777788888887 4444 4444444455567899999999999999999987766533
No 48
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=26.59 E-value=1.3e+02 Score=27.36 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=32.5
Q ss_pred hhhhhHHHHhhhhhh-----hhhccCCCCchhHHHHHHHHHHhhheeeEecccCCCC
Q 027613 134 YYVMFTSLTILASVI-----MFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDAV 185 (221)
Q Consensus 134 yyv~fTt~tIi~s~I-----lF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~k~~~ 185 (221)
-+-.|.+.+++.|.. +|..-. ..+.+-.+-.+|..++++|..+...-|+++
T Consensus 84 g~liW~s~n~l~Gw~~grfGlFg~~~-~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 84 GMLIWGSVNCLTGWASGRFGLFGLDP-QVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred HHHHHHHHHHHHHHHHhhceeccccc-cccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 456788888887765 565433 455566666677777777766665555444
No 49
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=25.07 E-value=1.6e+02 Score=20.95 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCc
Q 027613 101 WIFTMIVLVCVITQMNYLNKALDTFNT 127 (221)
Q Consensus 101 yv~li~lvv~av~Ql~yLNkAL~~fdt 127 (221)
..+++.++.+.+.+++++.|..+-+|.
T Consensus 5 ~~ilLsiiT~GIY~l~W~y~~~~~~~~ 31 (75)
T PF14018_consen 5 KVILLSIITCGIYGLYWLYKIWKELNQ 31 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577778889998888887776543
No 50
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=24.37 E-value=19 Score=25.18 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=19.0
Q ss_pred chhHHHHHHHHHHhhheeeEecccC
Q 027613 158 PTQIVTEICGFVTILSGTFLLHKTK 182 (221)
Q Consensus 158 ~~~ii~f~~G~lii~~GV~LLs~~k 182 (221)
..++.+++++-++.++|+.++.+.|
T Consensus 13 tLrigGLi~A~vlfi~Gi~iils~k 37 (50)
T PF02038_consen 13 TLRIGGLIFAGVLFILGILIILSGK 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTH
T ss_pred HhhccchHHHHHHHHHHHHHHHcCc
Confidence 4778888888888888887776554
No 51
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=23.42 E-value=1.1e+02 Score=28.10 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=39.4
Q ss_pred HHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEecccCCC
Q 027613 120 KALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDA 184 (221)
Q Consensus 120 kAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~k~~ 184 (221)
-|+..-+.++|.|+-=+-.....+++...+=+.+ +..+ ..|+..++.|+.++-...++
T Consensus 69 ~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~---~~~~----~~G~~l~i~G~~liv~~~~~ 126 (300)
T PF05653_consen 69 VALGFAPASLVAPLGALSLVFNAVLARFFLGEKL---TRRD----IVGCALIILGSVLIVIFAPK 126 (300)
T ss_pred HHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccc---hHhH----HhhHHHHHhhheeeEEeCCC
Confidence 4888899999999987777777777776664433 3333 45677777777665544433
No 52
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=23.40 E-value=1.7e+02 Score=27.88 Aligned_cols=79 Identities=10% Similarity=0.239 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCce---eeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheee
Q 027613 100 TWIFTMIVLVCVITQMNYLNKALDTFNTA---VVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTF 176 (221)
Q Consensus 100 tyv~li~lvv~av~Ql~yLNkAL~~fdts---iVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~ 176 (221)
-|++.++.-+.=..|..+.-++=..-.+. .--++...+..+.+.+- .+..+||++.+....-.+.+|+.+++..+.
T Consensus 258 N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvw-Gl~lkEWKg~s~kt~~vl~~G~~vlI~s~~ 336 (344)
T PF06379_consen 258 NYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVW-GLILKEWKGASKKTIRVLVLGIAVLILSVV 336 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHH-HHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 36777777777778999998887666543 11222333333333333 456899999999999999999999988776
Q ss_pred Eec
Q 027613 177 LLH 179 (221)
Q Consensus 177 LLs 179 (221)
++.
T Consensus 337 ivG 339 (344)
T PF06379_consen 337 IVG 339 (344)
T ss_pred HHh
Confidence 553
No 53
>PRK03557 zinc transporter ZitB; Provisional
Probab=21.16 E-value=1.5e+02 Score=26.89 Aligned_cols=42 Identities=19% Similarity=0.368 Sum_probs=26.2
Q ss_pred hhHHHHhhhhhh-hhhccCCCCchhHHHHHHHHHHhhheeeEecc
Q 027613 137 MFTSLTILASVI-MFKDWDRQNPTQIVTEICGFVTILSGTFLLHK 180 (221)
Q Consensus 137 ~fTt~tIi~s~I-lF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~ 180 (221)
+-++.+++++.+ .|-+|. -...+.+++.+++++..|+-++-.
T Consensus 165 l~s~~vlv~~~~~~~~g~~--~~Dpi~~ilis~~i~~~~~~l~~~ 207 (312)
T PRK03557 165 LGSVGAIIAALIIIWTGWT--PADPILSILVSVLVLRSAWRLLKE 207 (312)
T ss_pred HHHHHHHHHHHHHHHcCCc--chhHHHHHHHHHHHHHHHHHHHHH
Confidence 344445565533 444554 256677888899998888766543
No 54
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=20.49 E-value=92 Score=31.38 Aligned_cols=39 Identities=21% Similarity=0.621 Sum_probs=28.6
Q ss_pred HHHHHHHhcccCce--------eeccchhhhhH-HHHhhhhhhhhhcc
Q 027613 115 MNYLNKALDTFNTA--------VVSPIYYVMFT-SLTILASVIMFKDW 153 (221)
Q Consensus 115 l~yLNkAL~~fdts--------iVvPiyyv~fT-t~tIi~s~IlF~Ef 153 (221)
+++|---|+++|.. -.+|=+||..| |++++.|+|+.=||
T Consensus 20 ~~~~~~~l~~~~~~~~~~~f~~~ltpkfyvaltgtsslisg~i~ifEW 67 (539)
T PF04184_consen 20 LYFLRAPLRLCENLNAVSVFLNTLTPKFYVALTGTSSLISGLILIFEW 67 (539)
T ss_pred HHHHhcchhccccHHHHHHHHhccCchheeeeccchHHHHHHHHHHHH
Confidence 56676667777653 35677777665 78999999987776
No 55
>PRK11689 aromatic amino acid exporter; Provisional
Probab=20.02 E-value=2.1e+02 Score=25.32 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEec
Q 027613 109 VCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLH 179 (221)
Q Consensus 109 v~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs 179 (221)
.+++.+.-| |+|+++-+++.+.+..|.. -..+++-|.++++|- .++. .+.|.++++.|+++..
T Consensus 224 ~t~~~~~l~-~~al~~~~a~~~s~~~~l~-Pv~a~i~~~~~lgE~--~~~~----~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 224 AMGFGYAAW-NVGILHGNMTLLATASYFT-PVLSAALAALLLSTP--LSFS----FWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHHHHHH-HHHHHccCHHHHHHHHHhH-HHHHHHHHHHHhCCC--CcHH----HHHHHHHHHHhHHHHh
Confidence 455555555 9999999999777776654 344666677778873 3444 4457777888876654
Done!