BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027614
         (221 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana
           At5g01750
 pdb|2Q4M|A Chain A, Ensemble Refinement Of The Crystal Structure Of Protein
           From Arabidopsis Thaliana At5g01750
          Length = 217

 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 9/165 (5%)

Query: 49  FTVFDSKGDLVFRVDNYIQGVKGEIVLMDAAGKSLLTIRRKRLSLGDNWLVYDGEKTDVN 108
           F + D  G+L+F+V   + G+  + VL+D +G  ++T+R K +S  D W V+ G  TD  
Sbjct: 54  FVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKXVSXHDRWQVFRGGSTDQR 113

Query: 109 PRFSVKKHVNILTNKCLAHVSCKGGDGXXXXXPTNNKNVLYEIQGSYAQRACAVYDGRRR 168
                 K  + L  K    V              + K   + ++GS+ +R+C VY G   
Sbjct: 114 DLLYTVKRSSXLQLKTKLDVFLGHN--------KDEKRCDFRVKGSWLERSCVVYAGESD 165

Query: 169 R-VAEIKKKEAVGGVAFGSDVFRLIVQPEMETAVAMGLVILLDQM 212
             VA+  +K  V  V  G D F + V P ++ A    LV++LD +
Sbjct: 166 AIVAQXHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDV 210


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,045,381
Number of Sequences: 62578
Number of extensions: 236528
Number of successful extensions: 336
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 2
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)