Query 027614
Match_columns 221
No_of_seqs 109 out of 469
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 21:25:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027614.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027614hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxu_A AT5G01750 protein; PFAM 100.0 5.7E-44 2E-48 301.6 21.4 205 4-217 8-215 (217)
2 1zxu_A AT5G01750 protein; PFAM 98.0 5.3E-05 1.8E-09 63.0 10.7 98 29-131 59-162 (217)
3 2fim_A Tubby related protein 1 46.9 1.3E+02 0.0045 25.4 12.1 108 79-197 36-162 (276)
4 2v2f_A Penicillin binding prot 46.1 11 0.00038 19.9 1.7 14 73-86 7-20 (26)
5 3c5n_A Tubby-related protein 1 45.7 1.3E+02 0.0044 24.9 11.9 107 80-197 13-138 (246)
6 1hzt_A Isopentenyl diphosphate 40.7 30 0.001 26.5 4.3 53 47-99 4-64 (190)
7 2ln7_A LPXTG-SITE transpeptida 34.7 12 0.00041 28.5 1.0 20 46-65 79-98 (147)
8 2dho_A Isopentenyl-diphosphate 33.4 68 0.0023 26.0 5.5 55 46-100 26-92 (235)
9 3oe3_A Putative periplasmic pr 30.3 82 0.0028 22.5 4.8 39 41-85 46-84 (98)
10 2pny_A Isopentenyl-diphosphate 28.8 95 0.0032 25.4 5.6 54 46-99 37-102 (246)
11 3u88_M Histone-lysine N-methyl 26.0 40 0.0014 22.4 2.2 18 191-208 28-45 (75)
12 1q27_A Putative nudix hydrolas 24.9 60 0.002 24.0 3.5 52 47-98 7-65 (171)
13 3fn5_A Sortase A; sortase-fold 24.7 22 0.00076 28.3 0.9 41 46-86 102-143 (187)
14 2fkb_A Putative nudix hydrolas 24.6 1.8E+02 0.0061 21.5 6.2 54 46-99 9-69 (180)
15 3osv_A Flagellar basal-BODY RO 24.5 96 0.0033 23.0 4.5 15 72-86 40-54 (138)
16 2kw8_A LPXTG-SITE transpeptida 24.1 22 0.00076 27.2 0.8 20 46-65 92-111 (158)
17 3c12_A FLGD, flagellar protein 23.1 1.2E+02 0.0041 22.3 4.8 17 71-87 41-57 (138)
18 2h1z_A Hybrid atracotoxin; bet 22.7 59 0.002 19.1 2.2 12 53-64 28-39 (39)
19 3c5n_A Tubby-related protein 1 21.8 1.6E+02 0.0055 24.3 5.7 42 158-207 199-242 (246)
20 4h3o_A Lectin; cadmium, plant 21.3 1.8E+02 0.006 20.3 5.2 11 73-83 63-73 (105)
21 4he6_A Peptidase family U32; u 20.8 92 0.0031 21.1 3.5 33 53-86 16-50 (89)
No 1
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=100.00 E-value=5.7e-44 Score=301.63 Aligned_cols=205 Identities=26% Similarity=0.489 Sum_probs=145.0
Q ss_pred ecCCCCcccccccCCCCCCC-CCCccCCcceEEEEEEeeeeEeCCCeEEEeCCCCEEEEEEeecCCccCeEEEECCCCCe
Q 027614 4 VYPNANVAAAATATAPSIPA-KPQASDANATVLTVWKKSLLFNCNGFTVFDSKGDLVFRVDNYIQGVKGEIVLMDAAGKS 82 (221)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~v~~K~~~~s~d~ftI~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~ 82 (221)
.||+.+.|+..+|.+++.+| .|+||++++++|+||+|.++|++++|+|+|++|+++|+|+|+.++++.++.|+|++|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~G~~ 87 (217)
T 1zxu_A 8 AYPQGSGPSGAPTPQAGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTP 87 (217)
T ss_dssp ----------------CCCSSCGGGBCSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTTSCE
T ss_pred eCCCCCCCCCCCCCCCcEEEECccccCCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEECCCCCE
Confidence 57888888887777777744 69999999999999999999988899999999999999999988999999999999999
Q ss_pred EEEEEeecCCCCCcEEEEeCCCCCC-cceEEEEeeecccCCceEEEEEecCCCCCCCCCCCCCCceeEEEEeeecCceeE
Q 027614 83 LLTIRRKRLSLGDNWLVYDGEKTDV-NPRFSVKKHVNILTNKCLAHVSCKGGDGSSSSSPTNNKNVLYEIQGSYAQRACA 161 (221)
Q Consensus 83 L~~i~~k~ls~~~~w~v~~g~~~~~-~~lf~vkk~~s~~~~k~~~~V~~~~~~~~~~~~~~~~~~~~~~v~G~~~~~~~~ 161 (221)
|++|++|.++++++|++|++++.++ +++|+||++. +++.+..++|++++.. .++.++|+|+|+|++++|+
T Consensus 88 l~~i~rk~~~~~~~~~v~~~~~~~~~~~i~~vrk~~-~~~~~~~~~V~~~~~~--------~~~~~~~~I~G~~~~~~f~ 158 (217)
T 1zxu_A 88 VVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSS-MLQLKTKLDVFLGHNK--------DEKRCDFRVKGSWLERSCV 158 (217)
T ss_dssp EEEEEC------CEEEEEETTCCCGGGEEEEEEC--------CCEEEEETTCC--------C-CCCSEEEESCTTTTCCE
T ss_pred EEEEEccccccCcEEEEEcCCCCCCCcEEEEEEEec-cccCCCeEEEEECCCC--------CCCceEEEEEEeEeCCEEE
Confidence 9999999999999999999885432 5899999982 2334556788876511 2345789999999999999
Q ss_pred EEeCC-CcEEEEEEeeeeeCceeeccceEEEEEcCCCCHHHHHHHHHhhhhccCCCC
Q 027614 162 VYDGR-RRRVAEIKKKEAVGGVAFGSDVFRLIVQPEMETAVAMGLVILLDQMFGSSG 217 (221)
Q Consensus 162 I~~~~-g~~VA~V~rk~~~~~~~~g~dtY~v~V~pgvD~alI~alvvilD~i~~~~~ 217 (221)
|++++ |++||+|+|||...++++|+|+|.|+|.||+|.+||||+|++||+++.+++
T Consensus 159 I~~~~~~~~Va~I~kk~~~~~~~~~~D~y~l~V~p~~D~aliialvv~iD~~~~~~~ 215 (217)
T 1zxu_A 159 VYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNREDR 215 (217)
T ss_dssp EEETTTCCEEEEEEEC--------CBCSEEEEECTTSBHHHHHHHHHHHHHHHC---
T ss_pred EEECCCCEEEEEEEeeeeccccccCCcEEEEEECCCCCHHHHHHHHHHHHHhhhhcc
Confidence 99986 799999999976667888999999999999999999999999999998875
No 2
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=97.97 E-value=5.3e-05 Score=62.97 Aligned_cols=98 Identities=18% Similarity=0.249 Sum_probs=66.9
Q ss_pred CCcceEEEEEEeeeeEeCCCeEEEeCCCCEEEEEEeecCCccCeEEEECCCCC----eEEEEEeec-CCCCCcEEEEeCC
Q 027614 29 DANATVLTVWKKSLLFNCNGFTVFDSKGDLVFRVDNYIQGVKGEIVLMDAAGK----SLLTIRRKR-LSLGDNWLVYDGE 103 (221)
Q Consensus 29 ~~~~~~l~v~~K~~~~s~d~ftI~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~----~L~~i~~k~-ls~~~~w~v~~g~ 103 (221)
......|+|..+.+++ ++.+.|+|.+|++++++..+.+++..+..++++.+. +|++|+++. +++++.|+|+.++
T Consensus 59 ~~G~~vf~V~~~~~~~-~~~~~l~D~~G~~l~~i~rk~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~~ 137 (217)
T 1zxu_A 59 VNGNLLFKVKEPVFGL-HDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGH 137 (217)
T ss_dssp TTSCEEEEEECSSTTC-CSEEEEECTTSCEEEEEEC------CEEEEEETTCCCGGGEEEEEEC-------CCEEEEETT
T ss_pred CCCCEEEEEEccccCC-CCEEEEECCCCCEEEEEEccccccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEECC
Confidence 3457889998875555 689999999999999999998899999999999875 799999983 5689999999875
Q ss_pred CCCC-cceEEEEeeecccCCceEEEEEec
Q 027614 104 KTDV-NPRFSVKKHVNILTNKCLAHVSCK 131 (221)
Q Consensus 104 ~~~~-~~lf~vkk~~s~~~~k~~~~V~~~ 131 (221)
.+.+ .+.++|+-. ++...+ +|...
T Consensus 138 ~~~~~~~~~~I~G~--~~~~~f--~I~~~ 162 (217)
T 1zxu_A 138 NKDEKRCDFRVKGS--WLERSC--VVYAG 162 (217)
T ss_dssp CCC-CCCSEEEESC--TTTTCC--EEEET
T ss_pred CCCCCceEEEEEEe--EeCCEE--EEEEC
Confidence 3322 567888765 444444 66643
No 3
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=46.95 E-value=1.3e+02 Score=25.37 Aligned_cols=108 Identities=13% Similarity=0.176 Sum_probs=55.4
Q ss_pred CCCeEEEEEeec--C--CCCCcEEEEeCCCCCCcceEEEEeeecccCCceEEEEEecCCCCCCCCCCCCCCceeEEEEee
Q 027614 79 AGKSLLTIRRKR--L--SLGDNWLVYDGEKTDVNPRFSVKKHVNILTNKCLAHVSCKGGDGSSSSSPTNNKNVLYEIQGS 154 (221)
Q Consensus 79 ~G~~L~~i~~k~--l--s~~~~w~v~~g~~~~~~~lf~vkk~~s~~~~k~~~~V~~~~~~~~~~~~~~~~~~~~~~v~G~ 154 (221)
.|-.-+.|+|.. + ++.++|..|..++. +..++..||+-. .....+-|.+...+-+ . .++..-=+|+.|
T Consensus 36 ~~~iqC~I~R~k~g~~~g~yp~y~L~l~~~~-~~fLLaarK~k~--~~ts~YiIS~d~~dls-r----~s~~yvGKLrSN 107 (276)
T 2fim_A 36 GRTVRCRLTRDKKGMDRGMYPSYFLHLDTEK-KVFLLAGRKRKR--SKTANYLISIDPTNLS-R----GGENFIGKLRSN 107 (276)
T ss_dssp TCCEEEEEEEEC-------CCEEEEEECSSS-CEEEEEEEECTT--CSSCEEEEESCTTC-----------CEEEEEEEC
T ss_pred CCeEEEEEEEeCCCCCCCCceEEEEEEeCCC-CEEEEEEEeccC--CCCceEEEEecchhcc-c----CCceEEEEEEEc
Confidence 455667776532 2 35688999986421 245666666411 1223456665432211 0 112234467889
Q ss_pred ecCceeEEEeCCC---------------cEEEEEEeeeeeCceeeccceEEEEEcCCC
Q 027614 155 YAQRACAVYDGRR---------------RRVAEIKKKEAVGGVAFGSDVFRLIVQPEM 197 (221)
Q Consensus 155 ~~~~~~~I~~~~g---------------~~VA~V~rk~~~~~~~~g~dtY~v~V~pgv 197 (221)
|++..|.||+. | +.+|.|.-+....+ .-|.-...+.+ |+.
T Consensus 108 flGtkF~iyD~-G~~p~~~~s~~~~~~r~el~~V~Ye~nvlg-~~gPR~m~v~i-P~~ 162 (276)
T 2fim_A 108 LLGNRFTVFDN-GQNPQRGYSTNVASLRQELAAVIYETNVLG-FRGPRRMTVII-PGM 162 (276)
T ss_dssp SSSSEEEEECS-SBCGGGCTTSCGGGBCCEEEEEEEC----------CCEEEEE-ECB
T ss_pred cCCCEEEEECC-CCCcccccCcccccccEEEEEEEEEecccC-CCCCeEEEEEe-cCc
Confidence 99999999986 3 67888876532211 01344555555 443
No 4
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=46.13 E-value=11 Score=19.93 Aligned_cols=14 Identities=7% Similarity=0.176 Sum_probs=10.4
Q ss_pred EEEECCCCCeEEEE
Q 027614 73 IVLMDAAGKSLLTI 86 (221)
Q Consensus 73 ~~l~D~~G~~L~~i 86 (221)
-.|+|.+|+.+.+|
T Consensus 7 s~IYD~~g~~i~~l 20 (26)
T 2v2f_A 7 SKIYDNKNQLIADL 20 (26)
T ss_pred CEEEeCCCCEeeec
Confidence 36788888887776
No 5
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=45.75 E-value=1.3e+02 Score=24.93 Aligned_cols=107 Identities=13% Similarity=0.174 Sum_probs=57.1
Q ss_pred CCeEEEEEeec--C--CCCCcEEEEeCCCCCCcceEEEEeeecccCCceEEEEEecCCCCCCCCCCCCCCceeEEEEeee
Q 027614 80 GKSLLTIRRKR--L--SLGDNWLVYDGEKTDVNPRFSVKKHVNILTNKCLAHVSCKGGDGSSSSSPTNNKNVLYEIQGSY 155 (221)
Q Consensus 80 G~~L~~i~~k~--l--s~~~~w~v~~g~~~~~~~lf~vkk~~s~~~~k~~~~V~~~~~~~~~~~~~~~~~~~~~~v~G~~ 155 (221)
|-.-+.|+|.. + ++.++|..|..++. +..+...||+-. .....+-|.+...+-+ . .++..-=+|+.||
T Consensus 13 ~~~qC~I~R~k~g~~~~~yp~y~l~~~~~~-~~fLlaark~~~--~~~s~YiIS~d~~dls----r-~s~~yvGKLrsNf 84 (246)
T 3c5n_A 13 RTVRCRLTRDKKGMDRGMYPSYFLHLDTEK-KVFLLAGRKRKR--SKTANYLISIDPTNLS----R-GGENFIGKLRSNL 84 (246)
T ss_dssp CEEEEEEEECC------CCCEEEEEESSSS-CCEEEEEEECTT--CSSCEEEEESCTTC-----------CEEEEEEECS
T ss_pred ceEEEEEEEeCCCCCCCCceEEEEEEeCCC-cEEEEeeeeccC--CCCceEEEEeCccccc----c-CCceEEEEEEEcc
Confidence 33456777632 2 35688998886521 135566666421 2223456665442211 0 1122445678899
Q ss_pred cCceeEEEeCCC---------------cEEEEEEeeeeeCceeeccceEEEEEcCCC
Q 027614 156 AQRACAVYDGRR---------------RRVAEIKKKEAVGGVAFGSDVFRLIVQPEM 197 (221)
Q Consensus 156 ~~~~~~I~~~~g---------------~~VA~V~rk~~~~~~~~g~dtY~v~V~pgv 197 (221)
++..|.||+. | +.+|.|.-+....+ .-|.-...+.+ |+.
T Consensus 85 ~Gt~F~iyD~-g~~p~~~~s~~~~~~r~el~~v~Ye~n~l~-~~gPR~m~v~i-P~~ 138 (246)
T 3c5n_A 85 LGNRFTVFDN-GQNPQRGYSTNVASLRQELAAVIYETNVLG-FRGPRRMTVII-PGM 138 (246)
T ss_dssp SSSEEEEECS-CBCGGGCTTSCGGGBCCEEEEEEECCCCCC----CCCEEEEE-ECB
T ss_pred CCCEEEEECC-CCCcccccCcccccccEEEEEEEEEecccC-CCCCeEEEEEe-cCc
Confidence 9999999986 4 67888876633211 01444556555 443
No 6
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=40.70 E-value=30 Score=26.52 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=19.0
Q ss_pred CCeEEEeCCCCEEEEEEeecCC-------ccCeEEEECCCCCeEEEEEeec-CCCCCcEEE
Q 027614 47 NGFTVFDSKGDLVFRVDNYIQG-------VKGEIVLMDAAGKSLLTIRRKR-LSLGDNWLV 99 (221)
Q Consensus 47 d~ftI~D~~G~~vf~V~g~~~s-------~~~~~~l~D~~G~~L~~i~~k~-ls~~~~w~v 99 (221)
+-+.|+|.+|+++..+.-.... ..-...+++.+|+.|+.-|... -.+.+.|..
T Consensus 4 E~~~v~d~~~~~~g~~~r~~~~~~~~~~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~ 64 (190)
T 1hzt_A 4 EHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTN 64 (190)
T ss_dssp ---------------------------CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEE
T ss_pred eEEEEECCCCCEeeeEEHhhhcccCCceEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccC
Confidence 4578999999988876554433 1224567888888777544322 234678987
No 7
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=34.69 E-value=12 Score=28.49 Aligned_cols=20 Identities=0% Similarity=0.089 Sum_probs=14.9
Q ss_pred CCCeEEEeCCCCEEEEEEee
Q 027614 46 CNGFTVFDSKGDLVFRVDNY 65 (221)
Q Consensus 46 ~d~ftI~D~~G~~vf~V~g~ 65 (221)
||.+.|.+.++...|+|+..
T Consensus 79 GD~i~v~~~~~~~~Y~V~~~ 98 (147)
T 2ln7_A 79 KDTLVLEYDNKTYTYEIQKI 98 (147)
T ss_dssp TCEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEECCcEEEEEEEeE
Confidence 67777777777777777764
No 8
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=33.41 E-value=68 Score=25.99 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=36.1
Q ss_pred CCCeEEEeCCCCEEEEEEeecCC---------ccC--eEEEECCCCCeEEEEEeec-CCCCCcEEEE
Q 027614 46 CNGFTVFDSKGDLVFRVDNYIQG---------VKG--EIVLMDAAGKSLLTIRRKR-LSLGDNWLVY 100 (221)
Q Consensus 46 ~d~ftI~D~~G~~vf~V~g~~~s---------~~~--~~~l~D~~G~~L~~i~~k~-ls~~~~w~v~ 100 (221)
.+-+.|+|++|+++.++.-.... ++. ...++|.+|+.|++-|... ..+.+.|..-
T Consensus 26 ~E~~~lvd~~~~~~G~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p 92 (235)
T 2dho_A 26 AEMCILIDENDNKIGAETKKNCHLNENIEKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNT 92 (235)
T ss_dssp CCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESS
T ss_pred CcEEEEEcCCCCEEEEEEhHHhccccccCCCceEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEec
Confidence 46799999999999998554321 111 2357899998887644322 2356678743
No 9
>3oe3_A Putative periplasmic protein; beta barrel, hydrolase inhibitor; 1.51A {Salmonella enterica}
Probab=30.32 E-value=82 Score=22.47 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=24.7
Q ss_pred eeeEeCCCeEEEeCCCCEEEEEEeecCCccCeEEEECCCCCeEEE
Q 027614 41 SLLFNCNGFTVFDSKGDLVFRVDNYIQGVKGEIVLMDAAGKSLLT 85 (221)
Q Consensus 41 ~~~~s~d~ftI~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~ 85 (221)
..+=||-.|.--|.+|..+++-+| ++..|.|..|+|++.
T Consensus 46 v~SASGarY~~~~~~~~y~lwtKG------~eA~L~~~~g~~i~~ 84 (98)
T 3oe3_A 46 MKMASGANYEAIDKNYTYKLYTKG------KTAELVEGDDKPVLS 84 (98)
T ss_dssp EEC--CEEEEESSTTCCCEEEEET------TEEEEEETTTEEEEE
T ss_pred EEecCcceEEccCCCCcEEEEEeC------CcEEEEECCCCEEEc
Confidence 345556666655556666666665 566788888888764
No 10
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=28.84 E-value=95 Score=25.35 Aligned_cols=54 Identities=11% Similarity=0.119 Sum_probs=35.2
Q ss_pred CCCeEEEeCCCCEEEEEEeecCC--------c-c--CeEEEECCCCCeEEEEEeec-CCCCCcEEE
Q 027614 46 CNGFTVFDSKGDLVFRVDNYIQG--------V-K--GEIVLMDAAGKSLLTIRRKR-LSLGDNWLV 99 (221)
Q Consensus 46 ~d~ftI~D~~G~~vf~V~g~~~s--------~-~--~~~~l~D~~G~~L~~i~~k~-ls~~~~w~v 99 (221)
.+-+.|+|++|+++.++.-.... . + -...++|.+|+.|++-|... ..+.+.|..
T Consensus 37 ~E~~~lvd~~~~~iG~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~ 102 (246)
T 2pny_A 37 EEMLIVVDENDKVIGADTKRNCHLNENIEKGLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTD 102 (246)
T ss_dssp TCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCC
T ss_pred cceEEEEcCCCCEEEEEEhHHhccccccCCCcEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEe
Confidence 46799999999999998654211 1 1 13357899998877644322 234567874
No 11
>3u88_M Histone-lysine N-methyltransferase MLL; menin, MEN1, MLL, JUND, ledgf, TPR, transcription; HET: CHD 0BR GGB; 3.00A {Homo sapiens}
Probab=26.04 E-value=40 Score=22.38 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=14.9
Q ss_pred EEEcCCCCHHHHHHHHHh
Q 027614 191 LIVQPEMETAVAMGLVIL 208 (221)
Q Consensus 191 v~V~pgvD~alI~alvvi 208 (221)
+-|.||+|.+|-++.+|-
T Consensus 28 lgvgpGFDAALqvSa~Ig 45 (75)
T 3u88_M 28 LRVGPGFDAALQVSAAIG 45 (75)
T ss_dssp CEECCCCCHHHHHHHHHH
T ss_pred HccCcChhHHHHHHHHHH
Confidence 568999999998877664
No 12
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=24.90 E-value=60 Score=24.04 Aligned_cols=52 Identities=8% Similarity=0.034 Sum_probs=32.7
Q ss_pred CCeEEEeCCCCEEEEEEeecC------CccCeEEEECCCCCeEEEEEeecC-CCCCcEE
Q 027614 47 NGFTVFDSKGDLVFRVDNYIQ------GVKGEIVLMDAAGKSLLTIRRKRL-SLGDNWL 98 (221)
Q Consensus 47 d~ftI~D~~G~~vf~V~g~~~------s~~~~~~l~D~~G~~L~~i~~k~l-s~~~~w~ 98 (221)
+-+.|+|.+|+++..+.-... ...-...++|.+|+.|+.-|.... .+.+.|.
T Consensus 7 E~~~~~d~~~~~~g~~~r~~~~l~~~~~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~ 65 (171)
T 1q27_A 7 ERLDLVNERDEVVGQILRTDPALRWERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALD 65 (171)
T ss_dssp SEEEEESSSSCEEEEEESSCTTSCTTSCEEEEEEEEETTTEEEECCSCCSSSCCCCSCC
T ss_pred eeeeeecCCCCEeceEEhhhhccccccceEEEEEEECCCCeEEEEEecCCCCCCCCccc
Confidence 568999999999988765443 122345578888876654332222 2356776
No 13
>3fn5_A Sortase A; sortase-fold, hydrolase; HET: EPE; 1.50A {Streptococcus pyogenes serotype M1} PDB: 3fn6_A 3fn7_A
Probab=24.69 E-value=22 Score=28.30 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=26.1
Q ss_pred CCCeEEEeCCCCEEEEEEeecCCccCeEEEECC-CCCeEEEE
Q 027614 46 CNGFTVFDSKGDLVFRVDNYIQGVKGEIVLMDA-AGKSLLTI 86 (221)
Q Consensus 46 ~d~ftI~D~~G~~vf~V~g~~~s~~~~~~l~D~-~G~~L~~i 86 (221)
||.+.|.+.++...|+|++...--..++.++++ .|++.++|
T Consensus 102 GD~I~v~~~~~~~~Y~V~~~~vV~p~d~~vl~~~~g~~~LTL 143 (187)
T 3fn5_A 102 GMSIYLTDKEKIYEYIIKDVFTVAPERVDVIDDTAGLKEVTL 143 (187)
T ss_dssp TCEEEEECSSEEEEEEEEEEEEECTTCGGGGSCCTTCCEEEE
T ss_pred CCEEEEEECCeEEEEEEeeEEEECcccceeeccCCCCCEEEE
Confidence 788888888888889998764322333334443 45555554
No 14
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=24.62 E-value=1.8e+02 Score=21.48 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=34.8
Q ss_pred CCCeEEEeCCCCEEEEEEeecC------CccCeEEEECCCCCeEEEEEeecCC-CCCcEEE
Q 027614 46 CNGFTVFDSKGDLVFRVDNYIQ------GVKGEIVLMDAAGKSLLTIRRKRLS-LGDNWLV 99 (221)
Q Consensus 46 ~d~ftI~D~~G~~vf~V~g~~~------s~~~~~~l~D~~G~~L~~i~~k~ls-~~~~w~v 99 (221)
..-+.|+|.+|+++....-... ...-...+.|.+|+.|+.-|...-. +.+.|..
T Consensus 9 ~E~~~i~d~~~~~~g~~~r~~~~~~~~~~~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l 69 (180)
T 2fkb_A 9 TEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDA 69 (180)
T ss_dssp CCEEEEECTTSCEEEEEEHHHHHHHTCCEEEEEEEEECSSSCEEEEEECSSCSSSTTCEES
T ss_pred CeeEEEECCCCCEeeEEEHHHhhccCceeeEEEEEEECCCCEEEEEECCCCCccCCCcEEe
Confidence 4668999999999988764321 1223456779999988754433222 3567875
No 15
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=24.51 E-value=96 Score=22.95 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=7.3
Q ss_pred eEEEECCCCCeEEEE
Q 027614 72 EIVLMDAAGKSLLTI 86 (221)
Q Consensus 72 ~~~l~D~~G~~L~~i 86 (221)
++.|+|.+|+.+-++
T Consensus 40 ~v~I~d~~G~~V~t~ 54 (138)
T 3osv_A 40 WVNVYDDKGTVVNRI 54 (138)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEEEcCCCCEEEEE
Confidence 344555555554444
No 16
>2kw8_A LPXTG-SITE transpeptidase family protein; sortase, SRTA, protein binding; NMR {Bacillus anthracis}
Probab=24.11 E-value=22 Score=27.22 Aligned_cols=20 Identities=10% Similarity=0.340 Sum_probs=11.3
Q ss_pred CCCeEEEeCCCCEEEEEEee
Q 027614 46 CNGFTVFDSKGDLVFRVDNY 65 (221)
Q Consensus 46 ~d~ftI~D~~G~~vf~V~g~ 65 (221)
||.+.|.+.++...|+|.+.
T Consensus 92 Gd~i~v~~~~~~~~Y~V~~~ 111 (158)
T 2kw8_A 92 GDKIYLYDNENEYEYAVTGV 111 (158)
T ss_dssp TCEEEEECSSEEEEEEEEEE
T ss_pred CCEEEEEECCcEEEEEEEEE
Confidence 45555555555556666554
No 17
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=23.11 E-value=1.2e+02 Score=22.34 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=10.8
Q ss_pred CeEEEECCCCCeEEEEE
Q 027614 71 GEIVLMDAAGKSLLTIR 87 (221)
Q Consensus 71 ~~~~l~D~~G~~L~~i~ 87 (221)
-.+.|+|++|+.+-++.
T Consensus 41 v~v~I~d~~G~~V~t~~ 57 (138)
T 3c12_A 41 VNFEITDANGTFVKQLS 57 (138)
T ss_dssp EEEEEECSSCCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEE
Confidence 45566677777666664
No 18
>2h1z_A Hybrid atracotoxin; beta-hairpin, cystine knot; NMR {Hadronyche versuta}
Probab=22.69 E-value=59 Score=19.14 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=9.9
Q ss_pred eCCCCEEEEEEe
Q 027614 53 DSKGDLVFRVDN 64 (221)
Q Consensus 53 D~~G~~vf~V~g 64 (221)
+++|+.|+|.+.
T Consensus 28 NeNGntV~rC~~ 39 (39)
T 2h1z_A 28 NENGHTVYYCRA 39 (39)
T ss_dssp CSSCCEEEEEEC
T ss_pred ccCCCEEEeecC
Confidence 689999999763
No 19
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=21.83 E-value=1.6e+02 Score=24.33 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=25.7
Q ss_pred ceeEEEeCC--CcEEEEEEeeeeeCceeeccceEEEEEcCCCCHHHHHHHHH
Q 027614 158 RACAVYDGR--RRRVAEIKKKEAVGGVAFGSDVFRLIVQPEMETAVAMGLVI 207 (221)
Q Consensus 158 ~~~~I~~~~--g~~VA~V~rk~~~~~~~~g~dtY~v~V~pgvD~alI~alvv 207 (221)
.+|.++..+ +.+|.+.-|- ++|+|++++.--.-..-..||||
T Consensus 199 KNFqLv~~~~~~~ivlqFGKv--------~~d~FtmD~~yPlS~~QAFaI~L 242 (246)
T 3c5n_A 199 KNFQIVHADDPDYIVLQFGRV--------AEDAFTLDYRYPLCALQAFAIAL 242 (246)
T ss_dssp TCEEEEBTTBTTSCSEEEEEE--------ETTEEEEEEETTCCHHHHHHHHH
T ss_pred ceEEEEecCCCCEEEEEEEEe--------cCCeEEEEecCCCCHHHHHHHHH
Confidence 346666553 2344444333 68999999998876544444444
No 20
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=21.33 E-value=1.8e+02 Score=20.26 Aligned_cols=11 Identities=45% Similarity=0.860 Sum_probs=4.7
Q ss_pred EEEECCCCCeE
Q 027614 73 IVLMDAAGKSL 83 (221)
Q Consensus 73 ~~l~D~~G~~L 83 (221)
+.|+|.+|.++
T Consensus 63 LvL~d~~~~~v 73 (105)
T 4h3o_A 63 FVVYDSSGRSL 73 (105)
T ss_dssp EEEECTTCCEE
T ss_pred EEEECCCcEEE
Confidence 34444444443
No 21
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=20.80 E-value=92 Score=21.12 Aligned_cols=33 Identities=15% Similarity=0.066 Sum_probs=21.8
Q ss_pred eCC-CCEEEEEEeecCCccCeEEEECCCC-CeEEEE
Q 027614 53 DSK-GDLVFRVDNYIQGVKGEIVLMDAAG-KSLLTI 86 (221)
Q Consensus 53 D~~-G~~vf~V~g~~~s~~~~~~l~D~~G-~~L~~i 86 (221)
|.+ |.....++++ ++.++.+.++-+.| +.-+++
T Consensus 16 ~~~~g~~~ie~rN~-f~~GD~iEi~~P~g~~~~~~v 50 (89)
T 4he6_A 16 DPETGIATVQQRNH-FRPGDEVEFFGPEIENFTQVI 50 (89)
T ss_dssp ETTTTEEEEEESSC-BCTTCEEEEESTTSCCEEEEC
T ss_pred eCCCCEEEEEEcCC-cCCCCEEEEEcCCCCcEEEEe
Confidence 443 6666677776 46788888888888 444443
Done!