Query 027615
Match_columns 221
No_of_seqs 136 out of 476
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 21:26:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 96.6 0.00071 2.4E-08 54.2 2.1 68 109-182 38-105 (137)
2 3b5d_A Multidrug transporter E 95.5 0.015 5E-07 44.3 4.5 69 108-182 37-105 (110)
3 2jp3_A FXYD domain-containing 20.0 19 0.00065 25.6 -0.3 26 157-182 15-40 (67)
4 2zxe_G FXYD10, phospholemman-l 18.6 20 0.00069 25.9 -0.5 27 157-183 17-43 (74)
5 2gfp_A EMRD, multidrug resista 16.6 95 0.0033 25.6 3.2 59 116-175 111-169 (375)
6 2nsw_A Mating pheromone EN-2; 16.0 43 0.0015 23.3 0.7 15 9-24 24-38 (60)
7 2akh_X Protein-export membrane 14.8 2E+02 0.007 20.1 4.1 26 94-120 50-75 (77)
8 1brv_A Protein G, BRSV-G regio 14.0 36 0.0012 20.9 -0.1 14 8-21 15-29 (32)
9 1fjr_A Methuselah ectodomain; 13.5 43 0.0015 28.0 0.2 13 11-23 60-72 (195)
10 2a20_A Regulating synaptic mem 13.1 49 0.0017 23.1 0.4 14 6-19 25-38 (62)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.63 E-value=0.00071 Score=54.21 Aligned_cols=68 Identities=21% Similarity=0.291 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEecccC
Q 027615 109 VCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTK 182 (221)
Q Consensus 109 v~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~k 182 (221)
++...-...+++|++.-+.+.+.|+.-.+=...+.+.|.++|+| ..++.+ +.|.++++.||++++..+
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE--~ls~~~----~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ--RLDLPA----IIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC--------C----HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCC--CCCHHH----HHHHHHHHHHHHHHhcCC
Confidence 34444466889999999999999996556666677888999998 345555 568888999999998654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=95.50 E-value=0.015 Score=44.31 Aligned_cols=69 Identities=20% Similarity=0.301 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhheeeEecccC
Q 027615 108 LVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTK 182 (221)
Q Consensus 108 vv~av~Ql~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV~LLs~~k 182 (221)
+++...-...+++|++.-|.+.+.|+.=..=...+.+.|.++|+| ..++.+ ..|..+++.||.+++..+
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E--~~s~~~----~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ--RLDLPA----IIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCC--CCCHHH----HHHHHHHHHHHHHHhcCC
Confidence 334445567889999999999999997677777788899999998 456555 567888999999997654
No 3
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=19.96 E-value=19 Score=25.59 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=20.6
Q ss_pred CchhHHHHHHHHHHhhheeeEecccC
Q 027615 157 NPTQIVTEICGFVTILSGTFLLHKTK 182 (221)
Q Consensus 157 s~~~ii~f~~G~lii~~GV~LLs~~k 182 (221)
...++.+++++.++.+.|+.+|.+.|
T Consensus 15 ~tLRigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 15 ESLQLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHheecchhhHHHHHHHHHHHHHcCc
Confidence 35788888888888888888887653
No 4
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=18.62 E-value=20 Score=25.93 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=21.0
Q ss_pred CchhHHHHHHHHHHhhheeeEecccCC
Q 027615 157 NPTQIVTEICGFVTILSGTFLLHKTKD 183 (221)
Q Consensus 157 s~~~ii~f~~G~lii~~GV~LLs~~k~ 183 (221)
...++.+++++.++.+.||.+|.+.|=
T Consensus 17 ~tLRigGLifA~vLfi~GI~iilS~kc 43 (74)
T 2zxe_G 17 YRLRVVGLIVAAVLCVIGIIILLAGKC 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHheeccchhHHHHHHHHHHHHHcCcc
Confidence 357788888888888889888876654
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=16.60 E-value=95 Score=25.63 Aligned_cols=59 Identities=5% Similarity=-0.211 Sum_probs=28.6
Q ss_pred HHHHHHhcccCceeeccchhhhhHHHHhhhhhhhhhccCCCCchhHHHHHHHHHHhhhee
Q 027615 116 NYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGT 175 (221)
Q Consensus 116 ~yLNkAL~~fdtsiVvPiyyv~fTt~tIi~s~IlF~Ef~~~s~~~ii~f~~G~lii~~GV 175 (221)
.++.+-.+.=+-....-++...+....+++..+---=.+.. .++....+.+.+..+..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 111 TLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-NWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHHHHHHHHHHHHHHHH
Confidence 44444443334555666677777776666554421111111 244444555555555544
No 6
>2nsw_A Mating pheromone EN-2; structure, euplotes nobilii pheromone, disulfide-rich protein, all alpha helical, signaling protein; NMR {Euplotes nobilii}
Probab=15.99 E-value=43 Score=23.26 Aligned_cols=15 Identities=40% Similarity=1.241 Sum_probs=11.8
Q ss_pred CCCCCCccccceeccC
Q 027615 9 CSTCSSRTCDRICCGS 24 (221)
Q Consensus 9 ~~~~~~~~~~~~~~~~ 24 (221)
|.+++ .+|.++||++
T Consensus 24 Ct~~~-~~Cg~~CC~~ 38 (60)
T 2nsw_A 24 CSGGT-GNCGTVCCGQ 38 (60)
T ss_dssp HTTSS-SSCSSTGGGT
T ss_pred HccCc-ccccchHHHH
Confidence 55665 6899999987
No 7
>2akh_X Protein-export membrane protein SECG; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_X
Probab=14.79 E-value=2e+02 Score=20.12 Aligned_cols=26 Identities=8% Similarity=0.287 Sum_probs=16.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHH
Q 027615 94 QLIYPQTWIFTMIVLVCVITQMNYLNK 120 (221)
Q Consensus 94 qf~~~~tyv~li~lvv~av~Ql~yLNk 120 (221)
.+-...||++.++..++++. +.|+++
T Consensus 50 ~~L~k~T~~la~~F~v~sl~-l~~~~~ 75 (77)
T 2akh_X 50 NFMTRMTALLATLFFIISLV-LGNINS 75 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhc
Confidence 35567788877777666654 455543
No 8
>1brv_A Protein G, BRSV-G region; attachment protein G of bovine respiratory syncytial virus, immunoglobulin-binding protein; NMR {Bovine respiratory syncytial virus} SCOP: j.33.1.1
Probab=13.98 E-value=36 Score=20.88 Aligned_cols=14 Identities=43% Similarity=1.127 Sum_probs=10.1
Q ss_pred CCCCCCC-cccccee
Q 027615 8 NCSTCSS-RTCDRIC 21 (221)
Q Consensus 8 ~~~~~~~-~~~~~~~ 21 (221)
-||+|+. .+|..||
T Consensus 15 PCsiC~~N~~C~slC 29 (32)
T 1brv_A 15 PCSTCEGNLACLSLC 29 (32)
T ss_pred cccccCCChhHHHHh
Confidence 5999985 4676666
No 9
>1fjr_A Methuselah ectodomain; GPCR, G protein-coupled receptor, signaling PROT; HET: NAG; 2.30A {Drosophila melanogaster} SCOP: b.102.1.1 PDB: 2pzx_A
Probab=13.46 E-value=43 Score=27.95 Aligned_cols=13 Identities=38% Similarity=1.229 Sum_probs=11.0
Q ss_pred CCCCccccceecc
Q 027615 11 TCSSRTCDRICCG 23 (221)
Q Consensus 11 ~~~~~~~~~~~~~ 23 (221)
-|.-|.|-|+||.
T Consensus 60 vC~lr~CIR~CCp 72 (195)
T 1fjr_A 60 VCKLKPCVRFCCP 72 (195)
T ss_dssp GGGTSCEEEBSSC
T ss_pred eeecCCeeEEcCC
Confidence 4888999999996
No 10
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=13.07 E-value=49 Score=23.09 Aligned_cols=14 Identities=50% Similarity=1.227 Sum_probs=12.4
Q ss_pred cCCCCCCCCccccc
Q 027615 6 NHNCSTCSSRTCDR 19 (221)
Q Consensus 6 ~~~~~~~~~~~~~~ 19 (221)
.|.|+.|..|.|.|
T Consensus 25 Gh~C~yCk~r~CaR 38 (62)
T 2a20_A 25 GHNCSYCQTKFCAR 38 (62)
T ss_dssp CEEBTTTCCEECTT
T ss_pred CccccccCCeeecc
Confidence 58899999999988
Done!