BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027616
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8DKZ3|NDHL_THEEB NAD(P)H-quinone oxidoreductase subunit L OS=Thermosynechococcus
elongatus (strain BP-1) GN=ndhL PE=1 SV=1
Length = 76
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 35/60 (58%)
Query: 130 GIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRD 189
G +A Y L++P I+ +L RWY FE + V FFPGLLL APF+NFR PR
Sbjct: 14 GALAGLYLLVVPAIVYAYLNARWYVASSFERAFMYFLVTFFFPGLLLLAPFINFRPQPRS 73
>sp|B2J0I9|NDHL_NOSP7 NAD(P)H-quinone oxidoreductase subunit L OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=ndhL PE=3 SV=1
Length = 70
Score = 53.9 bits (128), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 122 LTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFL 181
+ VAL+ + I+A Y L++P ++ +L+ RWY E + + VF FFPGLL+ +PF
Sbjct: 1 MIVALLYL-ILAGAYLLVIPIAVLFYLKQRWYVASSIERLLMYFLVFFFFPGLLVLSPFA 59
Query: 182 NFRKLPR 188
NFR R
Sbjct: 60 NFRPQRR 66
>sp|Q8YMW5|NDHL_NOSS1 NAD(P)H-quinone oxidoreductase subunit L OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=ndhL PE=3 SV=1
Length = 70
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 136 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPR 188
Y L++P ++ +L++RWY E + VF+FFPGLL+ +PF+N R PR
Sbjct: 14 YLLVVPVALLFYLKLRWYVVSSIERTFMYFLVFLFFPGLLVLSPFVNLRPRPR 66
>sp|Q3MBD4|NDHL_ANAVT NAD(P)H-quinone oxidoreductase subunit L OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=ndhL PE=3 SV=1
Length = 70
Score = 53.1 bits (126), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 136 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPR 188
Y L++P +M +L+ RWY E + VF+FFPGLL+ +PF+N R PR
Sbjct: 14 YLLVVPVALMFYLKQRWYVVSSVERTFMYFLVFLFFPGLLVLSPFVNLRPRPR 66
>sp|Q7V2B1|NDHL_PROMP NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus
subsp. pastoris (strain CCMP1986 / MED4) GN=ndhL PE=3
SV=1
Length = 77
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 129 VGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFR 184
VGI++ Y L++P I+ W+ RW FE + + VF+FFPGL+L++PFLN R
Sbjct: 16 VGIVSI-YLLVIPLILFYWMNNRWNVMGKFERLIVYGLVFLFFPGLILFSPFLNLR 70
>sp|Q7V897|NDHL_PROMM NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus
(strain MIT 9313) GN=ndhL PE=3 SV=2
Length = 83
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 119 EIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWA 178
I+ + L ++ Y +++P ++ +W+ RW+ FE + VF+FFPGL+L+A
Sbjct: 11 SINSLMVLAAYALLGGLYLIVVPLLLYSWMNRRWHCMGKFERLSAYGLVFLFFPGLILFA 70
Query: 179 PFLNFR 184
PFLN R
Sbjct: 71 PFLNLR 76
>sp|A2CAP6|NDHL_PROM3 NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus
(strain MIT 9303) GN=ndhL PE=3 SV=2
Length = 83
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 136 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFR 184
Y +++P ++ +W+ RW+ FE + VF+FFPGL+L+APFLN R
Sbjct: 28 YLIVVPLLLYSWMNRRWHCMGKFERLSAYGMVFLFFPGLILFAPFLNLR 76
>sp|Q3AKY6|NDHL_SYNSC NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp.
(strain CC9605) GN=ndhL PE=3 SV=1
Length = 83
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 121 DLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPF 180
D + L+ ++ Y +++P + W+ RW++ E + VF FFPG++L+APF
Sbjct: 13 DTLLVLLAYTVLGGLYLVVVPLALYAWMNQRWHRMGKLERLGIYGMVFFFFPGMILFAPF 72
Query: 181 LNFR 184
LNFR
Sbjct: 73 LNFR 76
>sp|Q3AYG7|NDHL_SYNS9 NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp.
(strain CC9902) GN=ndhL PE=3 SV=1
Length = 83
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 125 ALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFR 184
L+ G + Y + +P + W+ +RWY+ FE + VF+FFPG++++APF+N R
Sbjct: 17 VLLAYGAVLGTYLIAVPLALYAWINLRWYRMSKFERLGVYGLVFLFFPGMIVFAPFINLR 76
>sp|Q8KX34|NDHL_SYNP2 NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=ndhL PE=3 SV=1
Length = 77
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 136 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRD 189
Y L++P + +L RWY E V + FVF FPG+LL +PFLNFR R+
Sbjct: 23 YLLVLPAGLYFYLNNRWYVASSIERLVMYFFVFFLFPGMLLLSPFLNFRPRRRE 76
>sp|A2BQ51|NDHL_PROMS NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus
(strain AS9601) GN=ndhL PE=3 SV=1
Length = 77
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 129 VGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFR 184
+GII F Y L++P ++ W+ RW FE + VF+FFPGL+L++PFLN R
Sbjct: 16 IGII-FTYLLVIPLLLFYWMNNRWNIMGKFERLGIYGLVFLFFPGLILFSPFLNLR 70
>sp|A3PBU4|NDHL_PROM0 NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus
(strain MIT 9301) GN=ndhL PE=3 SV=1
Length = 77
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 129 VGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFR 184
+GII+ Y L++P ++ W+ RW FE + VF+FFPGL+L++PFLN R
Sbjct: 16 IGIIS-TYLLVIPLLLFYWMNNRWNIMGKFERLGIYGLVFLFFPGLILFSPFLNLR 70
>sp|Q10W93|NDHL_TRIEI NAD(P)H-quinone oxidoreductase subunit L OS=Trichodesmium
erythraeum (strain IMS101) GN=ndhL PE=3 SV=1
Length = 78
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 117 NHEIDLT-VALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLL 175
N ++D + LI +A YFL+MP I+ +L+ RWY E + +F+FFPG+L
Sbjct: 2 NLDLDTNLIILIIYAALAGAYFLVMPAIVYAYLKTRWYVVSSIERVFMYFLMFLFFPGML 61
Query: 176 LWAPFLNFRKLPRDPSMKA 194
+ +PFLNFR PR +++
Sbjct: 62 VLSPFLNFR--PRKQQIES 78
>sp|P27372|NDHL_SYNY3 NAD(P)H-quinone oxidoreductase subunit L OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=ndhL PE=1 SV=1
Length = 80
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 124 VALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNF 183
+A+I +G+ + Y L+ P ++ +L+ RWY E V + VF+FFPGLL+ +P LN
Sbjct: 15 LAIIYLGL-SLAYLLVFPALLYWYLQKRWYVASSVERLVMYFLVFLFFPGLLVLSPVLNL 73
Query: 184 RKLPR 188
R PR
Sbjct: 74 R--PR 76
>sp|P0C8E6|NDHL_PROM2 NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus
(strain MIT 9215) GN=ndhL PE=3 SV=1
Length = 77
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 129 VGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFR 184
+GII+ Y L++P + W+ RW FE + VF+FFPGL+L++PFLN R
Sbjct: 16 IGIIS-TYLLVIPLFLFYWMNNRWNVMGKFERLGIYGLVFLFFPGLILFSPFLNLR 70
>sp|A2BVN3|NDHL_PROM5 NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus
(strain MIT 9515) GN=ndhL PE=3 SV=1
Length = 77
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 129 VGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFR 184
VGII+ + F+I P I+ W+ RW E + VF+FFPGL+L++PFLN R
Sbjct: 16 VGIISIYLFVI-PLILFYWMNNRWNVMGKLERLGVYGLVFLFFPGLILFSPFLNLR 70
>sp|Q31BW4|NDHL_PROM9 NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus
(strain MIT 9312) GN=ndhL PE=3 SV=1
Length = 77
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 136 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFR 184
Y L++P ++ W+ RW+ +E + VF+FFPGL+L++PFLN R
Sbjct: 22 YLLVIPLLLFYWMNNRWHVMGKYERLGIYGLVFLFFPGLILFSPFLNLR 70
>sp|Q0I8V6|NDHL_SYNS3 NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp.
(strain CC9311) GN=ndhL PE=3 SV=1
Length = 83
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 136 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFR 184
Y ++MP ++ W+ RW+ E + + VF FFPG++++APFLN R
Sbjct: 28 YLVVMPLLLFFWMNWRWHVMGKIERFSVYGLVFFFFPGMIVFAPFLNLR 76
>sp|B1X3F0|NDHL_PAUCH NAD(P)H-quinone oxidoreductase subunit L, organellar chromatophore
OS=Paulinella chromatophora GN=ndhL PE=3 SV=1
Length = 83
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 126 LIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFR 184
L+ G++ Y +++P + W+ RWY E + VF+FFPGL+L +PFLN R
Sbjct: 18 LLAYGVLGGLYLILVPLALYWWMNRRWYIMGKIERLFVYGLVFLFFPGLILLSPFLNMR 76
>sp|A2C127|NDHL_PROM1 NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus
(strain NATL1A) GN=ndhL PE=3 SV=1
Length = 89
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 111 AVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMF 170
+ G N I L+ + G+ Y ++P + W+ RW FE + VF+F
Sbjct: 13 GLIGAVNPIITLSAYAVLGGM----YLFVVPLFLFYWMNNRWNVMGKFERLFIYGLVFLF 68
Query: 171 FPGLLLWAPFLNFRKLPRDPS 191
FPG++L+APFLN R ++ S
Sbjct: 69 FPGMVLFAPFLNLRMNGKEES 89
>sp|Q46LY0|NDHL_PROMT NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus
(strain NATL2A) GN=ndhL PE=3 SV=1
Length = 89
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 111 AVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMF 170
+ G N I L+ + G+ Y L++P + W+ RW E + VF+F
Sbjct: 13 GLIGAVNPIITLSAYAVLGGM----YLLVVPLFLFYWMNNRWNVMGKLERLFIYGLVFLF 68
Query: 171 FPGLLLWAPFLNFRKLPRDPS 191
FPG++L+APFLN R ++ S
Sbjct: 69 FPGMILFAPFLNLRMNGKEGS 89
>sp|A5GJP1|NDHL_SYNPW NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp.
(strain WH7803) GN=ndhL PE=3 SV=1
Length = 81
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 136 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFR 184
Y +++P + W+ RW E + VF+FFPGL+L+APFLN R
Sbjct: 26 YLVVIPLFLYFWMNRRWTVMGKLERLGIYGLVFLFFPGLILFAPFLNLR 74
>sp|Q7U620|NDHL_SYNPX NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp.
(strain WH8102) GN=ndhL PE=3 SV=1
Length = 83
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 141 PPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFR 184
P + W+ RW + E + + VF+FFPG++++APFLNFR
Sbjct: 33 PLALFFWMNSRWTRMGKIERLLVYGLVFLFFPGMVVFAPFLNFR 76
>sp|B0JWY5|NDHL_MICAN NAD(P)H-quinone oxidoreductase subunit L OS=Microcystis aeruginosa
(strain NIES-843) GN=ndhL PE=3 SV=1
Length = 79
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 140 MPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKA 194
+P +I +L RWY +E + + FFPG+LL +PFLNFR P+ ++KA
Sbjct: 27 IPAVIYYYLNTRWYVASSWERGFMYFLMSFFFPGMLLLSPFLNFR--PQRRTLKA 79
>sp|A5GUE6|NDHL_SYNR3 NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp.
(strain RCC307) GN=ndhL PE=3 SV=2
Length = 83
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 147 WLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFR 184
W+ RW++ E + VF+FFPGL+L+APF+N R
Sbjct: 39 WMNKRWHQMGKIERTAIYGMVFLFFPGLILFAPFINLR 76
>sp|Q7VD17|NDHL_PROMA NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus
(strain SARG / CCMP1375 / SS120) GN=ndhL PE=3 SV=1
Length = 78
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 136 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFR 184
Y + +P + W+ RW E + + VF+FFPGL+L+APFLN R
Sbjct: 23 YLVFIPLGLYFWMNTRWNYMGKIERLLIYSLVFLFFPGLILFAPFLNLR 71
>sp|B1WNP9|NDHL_CYAA5 NAD(P)H-quinone oxidoreductase subunit L OS=Cyanothece sp. (strain
ATCC 51142) GN=ndhL PE=3 SV=1
Length = 85
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 139 IMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFR 184
I+P + +L RWY FE + +F FFPG+LL +PFLNFR
Sbjct: 32 IIPGFVYFYLNSRWYVASSFERAFMYFLMFFFFPGVLLLSPFLNFR 77
>sp|P0C8E5|NDHL_PROM4 NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus
(strain MIT 9211) GN=ndhL PE=3 SV=1
Length = 84
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 124 VALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFP 172
+ L GII F Y +++P + W+ +RW FE + VF+FFP
Sbjct: 11 LVLGAYGIIGFLYLVVIPLFLYFWMNIRWNFMNKFERLCLYGLVFLFFP 59
>sp|A8MW92|P20L1_HUMAN PHD finger protein 20-like protein 1 OS=Homo sapiens GN=PHF20L1
PE=1 SV=2
Length = 1017
Score = 34.3 bits (77), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 19/115 (16%)
Query: 102 LATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMY 161
L LE+PAL G + E F+ F ++ W R+Y K+ +
Sbjct: 65 LRPLERPALRKEGLKDEE-------------DFFDFKAGEEVLARWTDCRYYPAKIEAIN 111
Query: 162 VQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKA------PWDTPADPSKVKNAYL 210
+ F F+ G++ ++ + +P D + W P DP+ N +
Sbjct: 112 KEGTFTVQFYDGVIRCLKRMHIKAMPEDAKGQVKSQHPLSWCCPIDPAGSCNQSM 166
>sp|A2VE56|P20L1_BOVIN PHD finger protein 20-like protein 1 OS=Bos taurus GN=PHF20L1 PE=2
SV=1
Length = 316
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 19/108 (17%)
Query: 102 LATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMY 161
L LE+PAL G + E F+ F ++ W R+Y K+ +
Sbjct: 65 LRPLERPALRKEGLKDEE-------------DFFDFKAGEEVLARWTDCRYYPAKIEAIN 111
Query: 162 VQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKA------PWDTPADPS 203
+ F F+ G++ ++ + +P D + W P+DP+
Sbjct: 112 KEGTFTVQFYDGVIRCLKRMHIKAMPEDAKGQVKAQHPLSWCCPSDPA 159
>sp|Q9Z726|FTSK_CHLPN DNA translocase FtsK OS=Chlamydia pneumoniae GN=ftsK PE=2 SV=1
Length = 806
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 132 IAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPR 188
++ W F P NW+ + + F +Y F F P LW FL FR+ PR
Sbjct: 34 LSLWSFHRDQPCTQNWIGLLGWSFSSFLLYF-FGAAAFFIPLYFLWLSFLYFRRTPR 89
>sp|A8GFJ2|SYD_SERP5 Aspartate--tRNA ligase OS=Serratia proteamaculans (strain 568)
GN=aspS PE=3 SV=1
Length = 593
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 61 HKPNTKPAKLNKQKLTGTTQKAI-DCFDEKKSSLGIQAGAVLL--ATLEQPALAVTGENN 117
H P T P ++ ++L GT AI + +D + + G+V + + ++Q ++ G N
Sbjct: 448 HHPFTAPRDMSPEELAGTPTNAIANAYDMVINGYEVGGGSVRIHRSEMQQTVFSILGINE 507
Query: 118 HE 119
HE
Sbjct: 508 HE 509
>sp|C1DCA5|NUOC_LARHH NADH-quinone oxidoreductase subunit C OS=Laribacter hongkongensis
(strain HLHK9) GN=nuoC PE=3 SV=1
Length = 195
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 137 FLIMPPIIMNWLRVRWYKRKLFEMY 161
F ++P +I W V WY+R+ F+MY
Sbjct: 102 FPVVPSLIDVWASVNWYEREAFDMY 126
>sp|Q95LI3|ZFY_BOVIN Zinc finger Y-chromosomal protein OS=Bos taurus GN=ZFY PE=2 SV=1
Length = 801
Score = 30.8 bits (68), Expect = 6.7, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 21/104 (20%)
Query: 4 LPSICKLKDKKKQHKKSKKYRAAEMSSSFGIHSLKALPSL-----------------SST 46
L + K K KK++ S++Y+ A + G H L P + +
Sbjct: 386 LGRLTKHKPKKRRRPDSRQYQTAIIIGPDG-HPLTVYPCMICGKKFKSRGFLKRHMKNHP 444
Query: 47 RCVTKSSPLCIICKHKPNTKPA---KLNKQKLTGTTQKAIDCFD 87
+TK C C + N K + L KLT ++KAI+C D
Sbjct: 445 EHLTKKKYRCTDCDYTTNKKISLHNHLESHKLTSKSEKAIECDD 488
>sp|Q8BGN8|SYNPR_MOUSE Synaptoporin OS=Mus musculus GN=Synpr PE=1 SV=1
Length = 265
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 18/130 (13%)
Query: 76 TGTTQKAIDCFDEKKSSLGIQAGAVLLATL-------------EQPALAVTGENNHEIDL 122
+G + ++DC ++ +S+L I L EQ LA+ G+++ +
Sbjct: 22 SGGLRLSVDCVNKTESNLSIDIAFAYPFRLQQVTFEVPTCEGKEQQKLALVGDSSSSAEF 81
Query: 123 TVALIKVGIIAFWYFLIMPPI-IMNWLRVRWYKRK-LFEMYVQFMFVFMFFPGLLLWAPF 180
+ V + AF Y L + I + R R L + V +F F++ G WA
Sbjct: 82 ---FVTVAVFAFLYSLAATVVYIFFQNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKG 138
Query: 181 LNFRKLPRDP 190
L+ K+ DP
Sbjct: 139 LSDVKVATDP 148
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,861,786
Number of Sequences: 539616
Number of extensions: 3114975
Number of successful extensions: 7569
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7520
Number of HSP's gapped (non-prelim): 55
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)