Your job contains 1 sequence.
>027617
MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEAR
SLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQR
SRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVS
KSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 027617
(221 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2175733 - symbol:SGR4 "SHOOT GRAVITROPSIM 4" s... 742 1.7e-73 1
TAIR|locus:2200595 - symbol:VTI1B species:3702 "Arabidops... 653 4.7e-64 1
TAIR|locus:2094662 - symbol:VTI13 "vesicle transport V-sn... 555 1.1e-53 1
TAIR|locus:2164830 - symbol:AT5G39630 species:3702 "Arabi... 405 8.9e-38 1
MGI|MGI:1855699 - symbol:Vti1a "vesicle transport through... 269 2.3e-23 1
UNIPROTKB|Q96AJ9 - symbol:VTI1A "Vesicle transport throug... 262 1.3e-22 1
UNIPROTKB|J9NRK3 - symbol:VTI1A "Uncharacterized protein"... 261 1.6e-22 1
UNIPROTKB|E1BYU6 - symbol:VTI1A "Uncharacterized protein"... 253 1.1e-21 1
RGD|621490 - symbol:Vti1a "vesicle transport through inte... 252 1.5e-21 1
ASPGD|ASPL0000044157 - symbol:AN1973 species:162425 "Emer... 245 8.0e-21 1
UNIPROTKB|G4NC77 - symbol:MGG_01124 "Vesicle transport V-... 225 1.1e-18 1
ZFIN|ZDB-GENE-050809-135 - symbol:vti1a "vesicle transpor... 219 4.6e-18 1
UNIPROTKB|F1S5L0 - symbol:VTI1A "Uncharacterized protein"... 201 3.7e-16 1
WB|WBGene00013302 - symbol:vti-1 species:6239 "Caenorhabd... 201 3.7e-16 1
DICTYBASE|DDB_G0292974 - symbol:vti1A "v-SNARE family pro... 199 6.0e-16 1
FB|FBgn0260862 - symbol:Vti1 species:7227 "Drosophila mel... 192 3.3e-15 1
ZFIN|ZDB-GENE-040426-1148 - symbol:vti1b "vesicle transpo... 188 8.8e-15 1
SGD|S000004810 - symbol:VTI1 "Protein involved in cis-Gol... 185 1.8e-14 1
POMBASE|SPBC3B9.10 - symbol:vti1 "SNARE Vti1 (predicted)"... 180 6.2e-14 1
MGI|MGI:1855688 - symbol:Vti1b "vesicle transport through... 177 1.3e-13 1
UNIPROTKB|E1BUX5 - symbol:VTI1B "Uncharacterized protein"... 172 4.4e-13 1
UNIPROTKB|Q2KIU0 - symbol:VTI1B "Vesicle transport throug... 172 4.4e-13 1
UNIPROTKB|F1N1Z0 - symbol:VTI1B "Vesicle transport throug... 171 5.6e-13 1
UNIPROTKB|Q9UEU0 - symbol:VTI1B "Vesicle transport throug... 170 7.1e-13 1
RGD|1560475 - symbol:RGD1560475 "similar to vesicle trans... 169 9.1e-13 1
UNIPROTKB|P58200 - symbol:Vti1b "Vesicle transport throug... 169 9.1e-13 1
UNIPROTKB|F1SA25 - symbol:VTI1B "Uncharacterized protein"... 167 1.5e-12 1
UNIPROTKB|J9NYA0 - symbol:VTI1B "Uncharacterized protein"... 165 2.4e-12 1
UNIPROTKB|A0JNE7 - symbol:VTI1A "Uncharacterized protein"... 158 1.3e-11 1
UNIPROTKB|E1BYU9 - symbol:VTI1A "Uncharacterized protein"... 149 1.2e-10 1
UNIPROTKB|F1S5K8 - symbol:F1S5K8 "Uncharacterized protein... 149 1.2e-10 1
RGD|2323682 - symbol:LOC100359512 "vesicle transport thro... 147 2.0e-10 1
UNIPROTKB|E2R276 - symbol:VTI1A "Uncharacterized protein"... 146 2.5e-10 1
>TAIR|locus:2175733 [details] [associations]
symbol:SGR4 "SHOOT GRAVITROPSIM 4" species:3702
"Arabidopsis thaliana" [GO:0006886 "intracellular protein
transport" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005770 "late endosome" evidence=IDA;TAS]
[GO:0005802 "trans-Golgi network" evidence=IDA;TAS] [GO:0006896
"Golgi to vacuole transport" evidence=IGI] [GO:0004872 "receptor
activity" evidence=TAS] [GO:0009630 "gravitropism" evidence=IMP]
[GO:0030140 "trans-Golgi network transport vesicle" evidence=IDA]
[GO:0005773 "vacuole" evidence=IDA] [GO:0000325 "plant-type
vacuole" evidence=IDA] [GO:0005774 "vacuolar membrane"
evidence=IDA] [GO:0006623 "protein targeting to vacuole"
evidence=RCA;IMP] [GO:0005829 "cytosol" evidence=RCA] [GO:0000902
"cell morphogenesis" evidence=RCA] [GO:0006605 "protein targeting"
evidence=RCA] [GO:0006816 "calcium ion transport" evidence=RCA]
[GO:0006944 "cellular membrane fusion" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007033 "vacuole
organization" evidence=RCA] [GO:0009651 "response to salt stress"
evidence=RCA] [GO:0016049 "cell growth" evidence=RCA] [GO:0016192
"vesicle-mediated transport" evidence=RCA] [GO:0016197 "endosomal
transport" evidence=RCA] [GO:0048193 "Golgi vesicle transport"
evidence=RCA] InterPro:IPR007705 InterPro:IPR010989 Pfam:PF05008
GO:GO:0016021 GO:GO:0005794 GO:GO:0005774 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0016192 GO:GO:0031902 GO:GO:0000325
GO:GO:0009630 GO:GO:0005770 GO:GO:0005802 EMBL:AB009054
GO:GO:0006623 SUPFAM:SSF47661 EMBL:AF114750 EMBL:AY070486
EMBL:AY091707 IPI:IPI00519170 RefSeq:NP_198767.1 UniGene:At.30339
UniGene:At.71131 ProteinModelPortal:Q9SEL6 SMR:Q9SEL6 IntAct:Q9SEL6
STRING:Q9SEL6 PaxDb:Q9SEL6 PRIDE:Q9SEL6 EnsemblPlants:AT5G39510.1
GeneID:833947 KEGG:ath:AT5G39510 GeneFarm:4299 TAIR:At5g39510
eggNOG:NOG239679 HOGENOM:HOG000116573 InParanoid:Q9SEL6 KO:K08493
OMA:LIMSTER PhylomeDB:Q9SEL6 ProtClustDB:CLSN2687331
Genevestigator:Q9SEL6 GermOnline:AT5G39510 Uniprot:Q9SEL6
Length = 221
Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
Identities = 145/221 (65%), Positives = 174/221 (78%)
Query: 1 MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEAR 60
MSDVF+ YERQYCE+SA+LSKKC++A SLDGE+KKQK+SEI++GL+ AE LIRKMDLEAR
Sbjct: 1 MSDVFDGYERQYCELSASLSKKCSSAISLDGEQKKQKLSEIKSGLENAEVLIRKMDLEAR 60
Query: 61 SLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQR 120
+L PN+K+ LL KLRE+KSDLNN K+EVKR+ SG LNAAARDELLE+GMAD TASADQR
Sbjct: 61 TLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR 120
Query: 121 SRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVS 180
+RLMMSTER+ ++TDR+KDSRRTM+ETEE+GV AH TLHGVDDN+
Sbjct: 121 ARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETLHGVDDNIG 180
Query: 181 KSKKVLTAMSRRMSRNKWIIGTXXXXXXXXXXXXXYFKLAK 221
KSKK+LT M+RRM++NKW IG YFKL K
Sbjct: 181 KSKKILTDMTRRMNKNKWTIGAIIIALIAAIFIILYFKLTK 221
>TAIR|locus:2200595 [details] [associations]
symbol:VTI1B species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006886 "intracellular
protein transport" evidence=IEA] [GO:0006944 "cellular membrane
fusion" evidence=RCA;IPI] [GO:0000149 "SNARE binding" evidence=TAS]
[GO:0004872 "receptor activity" evidence=TAS] [GO:0005770 "late
endosome" evidence=TAS] [GO:0005802 "trans-Golgi network"
evidence=IDA;TAS] [GO:0006891 "intra-Golgi vesicle-mediated
transport" evidence=RCA;TAS] [GO:0005483 "soluble NSF attachment
protein activity" evidence=TAS] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0046907 "intracellular transport" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006623 "protein
targeting to vacuole" evidence=RCA;IMP] [GO:0000902 "cell
morphogenesis" evidence=RCA] [GO:0006869 "lipid transport"
evidence=RCA] [GO:0010351 "lithium ion transport" evidence=RCA]
[GO:0016049 "cell growth" evidence=RCA] [GO:0016192
"vesicle-mediated transport" evidence=RCA] [GO:0016197 "endosomal
transport" evidence=RCA] [GO:0016558 "protein import into
peroxisome matrix" evidence=RCA] [GO:0048193 "Golgi vesicle
transport" evidence=RCA] [GO:0005768 "endosome" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] InterPro:IPR007705
InterPro:IPR010989 Pfam:PF05008 GO:GO:0016021 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005886 GO:GO:0005794 GO:GO:0016192
GO:GO:0031902 GO:GO:0005770 GO:GO:0005802 GO:GO:0006623
EMBL:AC006535 SUPFAM:SSF47661 GO:GO:0005483 eggNOG:NOG239679
HOGENOM:HOG000116573 KO:K08493 ProtClustDB:CLSN2687331
EMBL:AF114751 IPI:IPI00532963 RefSeq:NP_564255.1 UniGene:At.24378
ProteinModelPortal:Q9SEL5 SMR:Q9SEL5 STRING:Q9SEL5 PaxDb:Q9SEL5
PRIDE:Q9SEL5 EnsemblPlants:AT1G26670.1 GeneID:839208
KEGG:ath:AT1G26670 GeneFarm:4300 TAIR:At1g26670 InParanoid:Q9SEL5
OMA:QYCELST PhylomeDB:Q9SEL5 Genevestigator:Q9SEL5
GermOnline:AT1G26670 Uniprot:Q9SEL5
Length = 222
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 130/201 (64%), Positives = 158/201 (78%)
Query: 1 MSDVFERYERQYCEISANLSKKCTAAASL-DGERKKQKVSEIQTGLDEAESLIRKMDLEA 59
MSDVFE YERQYCE+S NLS+KC +A+ L +GE KK K++EI++G+DEA+ LIRKMDLEA
Sbjct: 1 MSDVFEGYERQYCELSTNLSRKCHSASVLSNGEEKKGKIAEIKSGIDEADVLIRKMDLEA 60
Query: 60 RSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQ 119
RSLQP+ KAV L+KLREYKSDLN LK E KR+ S + ++R+EL+ESGMAD SADQ
Sbjct: 61 RSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQ 120
Query: 120 RSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNTLHGVDDNV 179
R RL MS ER++QS+DRI++SRR MLETEE+G+ HAHN LHGVDD +
Sbjct: 121 RGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKLHGVDDAI 180
Query: 180 SKSKKVLTAMSRRMSRNKWII 200
KSKKVLTAMSRRM+RNKWII
Sbjct: 181 DKSKKVLTAMSRRMTRNKWII 201
>TAIR|locus:2094662 [details] [associations]
symbol:VTI13 "vesicle transport V-snare 13" species:3702
"Arabidopsis thaliana" [GO:0005794 "Golgi apparatus" evidence=ISM]
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0006944 "cellular membrane
fusion" evidence=IPI] [GO:0000149 "SNARE binding" evidence=TAS]
[GO:0004872 "receptor activity" evidence=TAS] [GO:0006891
"intra-Golgi vesicle-mediated transport" evidence=TAS]
InterPro:IPR007705 InterPro:IPR010989 Pfam:PF05008 EMBL:CP002686
GO:GO:0006886 GO:GO:0016020 GO:GO:0016192 GO:GO:0005622
SUPFAM:SSF47661 HOGENOM:HOG000116573 KO:K08493
ProtClustDB:CLSN2687331 EMBL:BT029498 IPI:IPI00570404
RefSeq:NP_189554.2 UniGene:At.36973 ProteinModelPortal:A1A6H8
SMR:A1A6H8 STRING:A1A6H8 EnsemblPlants:AT3G29100.1 GeneID:822557
KEGG:ath:AT3G29100 OMA:MTRRMNR Genevestigator:A1A6H8 Uniprot:A1A6H8
Length = 195
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 111/170 (65%), Positives = 127/170 (74%)
Query: 52 IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 111
++KMDLEAR+L PNVK+ LL KLREYKSDLNN K+EVKR+ SGNLNA ARDELLE+GMAD
Sbjct: 26 VKKMDLEARNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMAD 85
Query: 112 ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNT 171
LTASADQRSRLMMST+ + ++TDRIKDSRRT+LETEELGV AH T
Sbjct: 86 TLTASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHET 145
Query: 172 LHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTXXXXXXXXXXXXXYFKLAK 221
LHGVDDNV KSKK+LT M+RRM+RNKW IG YFKL +
Sbjct: 146 LHGVDDNVGKSKKILTTMTRRMNRNKWTIGAIITVLVLAIIFILYFKLTR 195
>TAIR|locus:2164830 [details] [associations]
symbol:AT5G39630 species:3702 "Arabidopsis thaliana"
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0006944 "cellular membrane
fusion" evidence=RCA;IPI] [GO:0000149 "SNARE binding" evidence=TAS]
[GO:0004872 "receptor activity" evidence=TAS] [GO:0006891
"intra-Golgi vesicle-mediated transport" evidence=TAS] [GO:0016192
"vesicle-mediated transport" evidence=RCA] InterPro:IPR007705
InterPro:IPR010989 Pfam:PF05008 EMBL:CP002688 GO:GO:0006886
GO:GO:0016020 GO:GO:0016192 GO:GO:0005622 SUPFAM:SSF47661 KO:K08493
ProtClustDB:CLSN2687331 EMBL:DQ447016 IPI:IPI00537827
RefSeq:NP_198779.1 UniGene:At.55257 ProteinModelPortal:Q1PDQ2
SMR:Q1PDQ2 STRING:Q1PDQ2 EnsemblPlants:AT5G39630.1 GeneID:833959
KEGG:ath:AT5G39630 TAIR:At5g39630 InParanoid:Q1PDQ2 OMA:RLMKSTE
PhylomeDB:Q1PDQ2 ArrayExpress:Q1PDQ2 Genevestigator:Q1PDQ2
Uniprot:Q1PDQ2
Length = 207
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 86/189 (45%), Positives = 122/189 (64%)
Query: 1 MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEAR 60
MS+VF Y++QY E+S NLSKKC+ A SL G KK+K+SEI L+ AE LI KMD A
Sbjct: 1 MSNVFHEYDQQYSELSINLSKKCSLAFSLKGGEKKEKLSEITYDLENAEKLISKMDHAAS 60
Query: 61 SLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQR 120
+L PN+K++LL KL+E KS L L++E+KR S NL R+E+LE+ AD ADQR
Sbjct: 61 NLPPNIKSILLEKLKESKSSLKRLRNEIKRNTSENLKVTTREEVLEAEKADL----ADQR 116
Query: 121 SRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVS 180
SRLM STE + ++ + IKDS+R +LETE +G+ ++ LH +DD V
Sbjct: 117 SRLMKSTEGLVRTREMIKDSQRKLLETENIGISILENLQRQKESLQNSQAMLHEIDDTVK 176
Query: 181 KSKKVLTAM 189
+S+ ++ ++
Sbjct: 177 ESRSIVRSI 185
>MGI|MGI:1855699 [details] [associations]
symbol:Vti1a "vesicle transport through interaction with
t-SNAREs 1A" species:10090 "Mus musculus" [GO:0005484 "SNAP
receptor activity" evidence=ISO] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0006810 "transport" evidence=IEA] [GO:0006886 "intracellular
protein transport" evidence=IEA] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=ISO] [GO:0008021 "synaptic
vesicle" evidence=ISO] [GO:0015031 "protein transport"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016192 "vesicle-mediated
transport" evidence=IEA] [GO:0030136 "clathrin-coated vesicle"
evidence=ISO] [GO:0031201 "SNARE complex" evidence=ISO] [GO:0042147
"retrograde transport, endosome to Golgi" evidence=ISO] [GO:0043025
"neuronal cell body" evidence=ISO] [GO:0048280 "vesicle fusion with
Golgi apparatus" evidence=ISO] InterPro:IPR000727
InterPro:IPR007705 InterPro:IPR010989 Pfam:PF05008 SMART:SM00397
MGI:MGI:1855699 GO:GO:0016021 GO:GO:0006886 GO:GO:0000139
GO:GO:0043025 GO:GO:0008021 GO:GO:0006888 GO:GO:0031201
GO:GO:0042147 GO:GO:0048280 SUPFAM:SSF47661 eggNOG:NOG239679
HOGENOM:HOG000116573 KO:K08493 CTD:143187 HOVERGEN:HBG104027
OMA:YEQDFGT OrthoDB:EOG4V6ZHV EMBL:AF035823 EMBL:AF035209
EMBL:AK004751 EMBL:AK028646 EMBL:BC019386 IPI:IPI00131540
RefSeq:NP_058558.1 UniGene:Mm.258637 UniGene:Mm.451214 PDB:1VCS
PDBsum:1VCS ProteinModelPortal:O89116 SMR:O89116 IntAct:O89116
STRING:O89116 PhosphoSite:O89116 PaxDb:O89116 PRIDE:O89116
Ensembl:ENSMUST00000095950 GeneID:53611 KEGG:mmu:53611
UCSC:uc008hxx.1 GeneTree:ENSGT00530000063466
EvolutionaryTrace:O89116 NextBio:310323 Bgee:O89116
Genevestigator:O89116 GermOnline:ENSMUSG00000024983 Uniprot:O89116
Length = 217
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 59/200 (29%), Positives = 107/200 (53%)
Query: 1 MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEAR 60
MS FE YE+ + ++A ++ K L + KKQ V+ ++ L+EA L+ +MDLE R
Sbjct: 1 MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 60
Query: 61 SLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQR 120
+ P + + ++R YK ++ L+++ KR A DE+ + DA +S +QR
Sbjct: 61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRS-----RIAYSDEVRNELLGDAGNSSENQR 115
Query: 121 SRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVS 180
+ L+ +TER+ +S+ R++ + +ETE++G A + L D N+
Sbjct: 116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARDRLRDADANLG 175
Query: 181 KSKKVLTAMSRRMSRNKWII 200
KS ++LT M RR+ +N+ ++
Sbjct: 176 KSSRILTGMLRRIIQNRILL 195
>UNIPROTKB|Q96AJ9 [details] [associations]
symbol:VTI1A "Vesicle transport through interaction with
t-SNAREs homolog 1A" species:9606 "Homo sapiens" [GO:0006886
"intracellular protein transport" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0000139 "Golgi membrane"
evidence=IEA] [GO:0016023 "cytoplasmic membrane-bounded vesicle"
evidence=IEA] [GO:0042147 "retrograde transport, endosome to Golgi"
evidence=IMP;IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
[GO:0005484 "SNAP receptor activity" evidence=IDA] [GO:0031201
"SNARE complex" evidence=TAS] InterPro:IPR000727 InterPro:IPR007705
InterPro:IPR010989 Pfam:PF05008 SMART:SM00397 GO:GO:0016021
GO:GO:0005794 GO:GO:0006886 GO:GO:0000139 GO:GO:0043025
EMBL:CH471066 GO:GO:0008021 GO:GO:0006888 GO:GO:0031201
GO:GO:0042147 GO:GO:0005484 GO:GO:0048280 SUPFAM:SSF47661
EMBL:AL158212 eggNOG:NOG239679 HOGENOM:HOG000116573 KO:K08493
EMBL:AK303646 EMBL:AL139120 EMBL:AC022018 EMBL:BC017052
IPI:IPI00059472 IPI:IPI00852968 RefSeq:NP_660207.2
UniGene:Hs.194554 ProteinModelPortal:Q96AJ9 SMR:Q96AJ9
IntAct:Q96AJ9 MINT:MINT-3050814 STRING:Q96AJ9 PhosphoSite:Q96AJ9
DMDM:29337113 PaxDb:Q96AJ9 PeptideAtlas:Q96AJ9 PRIDE:Q96AJ9
DNASU:143187 Ensembl:ENST00000393077 Ensembl:ENST00000432306
GeneID:143187 KEGG:hsa:143187 UCSC:uc001kzy.3 CTD:143187
GeneCards:GC10P114197 H-InvDB:HIX0023094 HGNC:HGNC:17792 MIM:614316
neXtProt:NX_Q96AJ9 PharmGKB:PA134928049 HOVERGEN:HBG104027
OMA:YEQDFGT OrthoDB:EOG4V6ZHV GenomeRNAi:143187 NextBio:84666
ArrayExpress:Q96AJ9 Bgee:Q96AJ9 CleanEx:HS_VTI1A
Genevestigator:Q96AJ9 GermOnline:ENSG00000151532 Uniprot:Q96AJ9
Length = 217
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 58/200 (29%), Positives = 106/200 (53%)
Query: 1 MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEAR 60
MS FE YE+ + ++A ++ K L + KKQ V+ ++ L+EA+ L+ +MDLE R
Sbjct: 1 MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVR 60
Query: 61 SLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQR 120
+ P + + ++R YK ++ L+++ KR A DE+ + D +S +QR
Sbjct: 61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRS-----RIAYSDEVRNELLGDDGNSSENQR 115
Query: 121 SRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVS 180
+ L+ +TER+ +S+ R++ + +ETE++G A L D N+
Sbjct: 116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDANLG 175
Query: 181 KSKKVLTAMSRRMSRNKWII 200
KS ++LT M RR+ +N+ ++
Sbjct: 176 KSSRILTGMLRRIIQNRILL 195
>UNIPROTKB|J9NRK3 [details] [associations]
symbol:VTI1A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016192 "vesicle-mediated transport"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] InterPro:IPR000727
InterPro:IPR007705 InterPro:IPR010989 Pfam:PF05008 SMART:SM00397
GO:GO:0006886 GO:GO:0016020 GO:GO:0016192 GO:GO:0005622
SUPFAM:SSF47661 KO:K08493 CTD:143187 OMA:YEQDFGT
GeneTree:ENSGT00530000063466 EMBL:AAEX03015533
RefSeq:XP_003433671.1 Ensembl:ENSCAFT00000050009 GeneID:100685447
KEGG:cfa:100685447 Uniprot:J9NRK3
Length = 217
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 59/200 (29%), Positives = 105/200 (52%)
Query: 1 MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEAR 60
MS FE YE+ + ++A ++ K L + KKQ V+ ++ L+EA L+ +MDLE R
Sbjct: 1 MSSDFEGYEQDFAVLTAEITGKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 60
Query: 61 SLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQR 120
+ P + + ++R YK ++ L+++ KR A DE+ + D +S +QR
Sbjct: 61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRS-----RIAYSDEVRNELLGDDGNSSENQR 115
Query: 121 SRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVS 180
+ L+ +TER+ +S+ R++ + +ETE++G A L D N+
Sbjct: 116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDANLG 175
Query: 181 KSKKVLTAMSRRMSRNKWII 200
KS +VLT M RR+ +N+ ++
Sbjct: 176 KSSRVLTGMLRRIIQNRILV 195
>UNIPROTKB|E1BYU6 [details] [associations]
symbol:VTI1A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0005484 "SNAP receptor
activity" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA]
InterPro:IPR000727 InterPro:IPR007705 InterPro:IPR010989
Pfam:PF05008 SMART:SM00397 GO:GO:0005794 GO:GO:0006886
GO:GO:0016020 GO:GO:0042147 SUPFAM:SSF47661 OMA:YEQDFGT
GeneTree:ENSGT00530000063466 EMBL:AADN02030905 IPI:IPI00597059
Ensembl:ENSGALT00000014431 Uniprot:E1BYU6
Length = 187
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 57/192 (29%), Positives = 102/192 (53%)
Query: 1 MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEAR 60
MS FE YE+ + ++A+++ + L G+ KKQ V+ I+ L+EA L+ +M+LE R
Sbjct: 1 MSSDFESYEQDFAVLTADITGRIGRVPKLLGDEKKQMVANIEKQLEEARELLEQMELEVR 60
Query: 61 SLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQR 120
+ P + + +++R YK ++ L+++ KR A DE+ + D +S +QR
Sbjct: 61 EIPPQSRGMYSSRMRSYKQEMGKLEADFKRS-----RIAYSDEVRNELLGDDGNSSENQR 115
Query: 121 SRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVS 180
+ L+ +TER+ +S+ R++ + +ETE++G A L D N+
Sbjct: 116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDANLG 175
Query: 181 KSKKVLTAMSRR 192
KS ++LT M RR
Sbjct: 176 KSSRILTGMLRR 187
>RGD|621490 [details] [associations]
symbol:Vti1a "vesicle transport through interaction with t-SNAREs
1A" species:10116 "Rattus norvegicus" [GO:0000139 "Golgi membrane"
evidence=IEA] [GO:0005484 "SNAP receptor activity" evidence=ISO]
[GO:0005794 "Golgi apparatus" evidence=ISO] [GO:0006886
"intracellular protein transport" evidence=IEA] [GO:0006888 "ER to
Golgi vesicle-mediated transport" evidence=IDA] [GO:0008021
"synaptic vesicle" evidence=IDA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0030054 "cell junction" evidence=IEA] [GO:0030136
"clathrin-coated vesicle" evidence=IDA] [GO:0030672 "synaptic
vesicle membrane" evidence=IEA] [GO:0031201 "SNARE complex"
evidence=IDA] [GO:0042147 "retrograde transport, endosome to Golgi"
evidence=ISO;ISS] [GO:0043025 "neuronal cell body" evidence=IDA]
[GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IDA]
InterPro:IPR000727 InterPro:IPR007705 InterPro:IPR010989
Pfam:PF05008 SMART:SM00397 RGD:621490 GO:GO:0016021 GO:GO:0006886
GO:GO:0000139 GO:GO:0030054 GO:GO:0043025 GO:GO:0008021
GO:GO:0030672 GO:GO:0006888 GO:GO:0031201 GO:GO:0042147
GO:GO:0048280 SUPFAM:SSF47661 PDB:2NPS PDBsum:2NPS eggNOG:NOG239679
HOGENOM:HOG000116573 KO:K08493 CTD:143187 HOVERGEN:HBG104027
EMBL:AF262222 EMBL:AF262221 IPI:IPI00199945 IPI:IPI00324090
RefSeq:NP_075589.1 UniGene:Rn.154408 ProteinModelPortal:Q9JI51
SMR:Q9JI51 MINT:MINT-5225883 STRING:Q9JI51 PRIDE:Q9JI51
GeneID:65277 KEGG:rno:65277 UCSC:RGD:621490
EvolutionaryTrace:Q9JI51 NextBio:614244 ArrayExpress:Q9JI51
Genevestigator:Q9JI51 Uniprot:Q9JI51
Length = 224
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 58/203 (28%), Positives = 110/203 (54%)
Query: 1 MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEAR 60
MS FE YE+ + ++A ++ K + L + KKQ V+ ++ L+EA L+ +MDLE R
Sbjct: 1 MSADFEGYEQDFAVLTAEITSKISRVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 60
Query: 61 SLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELL-ESGMA--DALTASA 117
+ P + + ++R YK ++ L+++ KR + R+ELL ++G + + L
Sbjct: 61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIA-YSDEVRNELLGDAGNSSENQLIKLR 119
Query: 118 DQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNTLHGVDD 177
++R+ L+ +TER+ +S+ R++ + +ETE++G A L D
Sbjct: 120 EERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDA 179
Query: 178 NVSKSKKVLTAMSRRMSRNKWII 200
N+ KS ++LT M RR+ +N+ ++
Sbjct: 180 NLGKSSRILTGMLRRIIQNRILL 202
>ASPGD|ASPL0000044157 [details] [associations]
symbol:AN1973 species:162425 "Emericella nidulans"
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0005770 "late endosome" evidence=IEA] [GO:0030173 "integral to
Golgi membrane" evidence=IEA] [GO:0000324 "fungal-type vacuole"
evidence=IEA] [GO:0031201 "SNARE complex" evidence=IEA] [GO:0030428
"cell septum" evidence=IEA] [GO:0005484 "SNAP receptor activity"
evidence=IEA] [GO:0006896 "Golgi to vacuole transport"
evidence=IEA] [GO:0006906 "vesicle fusion" evidence=IEA]
[GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IEA]
[GO:0042144 "vacuole fusion, non-autophagic" evidence=IEA]
InterPro:IPR000727 InterPro:IPR007705 InterPro:IPR010989
Pfam:PF05008 SMART:SM00397 GO:GO:0006886 GO:GO:0016192
EMBL:BN001307 GO:GO:0031201 GO:GO:0042144 SUPFAM:SSF47661
HOGENOM:HOG000116573 OMA:QYCELST EnsemblFungi:CADANIAT00008633
Uniprot:C8VL45
Length = 224
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 58/198 (29%), Positives = 102/198 (51%)
Query: 2 SDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARS 61
S++ YE + + A+L++K A L GE++ + + + L+EA L+ +M LE ++
Sbjct: 11 SEMLSSYETELNLVQADLNQKLDQIAELSGEQRNSTIRQAERALEEATELLDQMRLEKQN 70
Query: 62 LQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRS 121
+ ++ + + R Y +D++ K ++K L S + A D + D A +QR
Sbjct: 71 IPSAARSKVNTRFRNYATDIDEAKRKLKSL-SDDRKALFGDRYTD----DPQDAHLEQRQ 125
Query: 122 RLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVSK 181
+L+ TER+ +S+ R+++S+R LETE +G H H L + NV K
Sbjct: 126 QLLSGTERLERSSARLRESQRIALETEGIGANVLADLHQQRETITHTHGMLGQSESNVDK 185
Query: 182 SKKVLTAMSRRMSRNKWI 199
S K L M+RRM+ N+ I
Sbjct: 186 SIKTLKGMARRMATNRLI 203
>UNIPROTKB|G4NC77 [details] [associations]
symbol:MGG_01124 "Vesicle transport V-SNARE protein vti1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR007705
InterPro:IPR010989 Pfam:PF05008 GO:GO:0006886 GO:GO:0016020
GO:GO:0016192 EMBL:CM001235 GO:GO:0005622 SUPFAM:SSF47661 KO:K08493
RefSeq:XP_003717810.1 ProteinModelPortal:G4NC77
EnsemblFungi:MGG_01124T0 GeneID:2674406 KEGG:mgr:MGG_01124
Uniprot:G4NC77
Length = 233
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 57/202 (28%), Positives = 102/202 (50%)
Query: 2 SDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEA-R 60
+++F YE + + A+LS+K + L GE +K +S+ L+EA+ L+ +M LE +
Sbjct: 11 TELFASYEAELKLVQADLSQKLDSIPDLTGEPRKAALSQASRALEEADELLGQMRLEKQK 70
Query: 61 SLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGN---LNAAARDELLESGMADALTASA 117
++ + +A + + R Y++D++ ++ + L S +D SG A A
Sbjct: 71 NIPSSSRARVNQRFRNYETDVDAVRRRLDALASDRSALFGGRYQDNPSGSGGASASDVQL 130
Query: 118 DQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNTLHGVDD 177
+QR +L+ T+R+++S+ R+KDS LETE +G H L +
Sbjct: 131 EQREQLLRGTDRLDRSSRRLKDSHALALETEAIGASTLRDLAHQRSQIQHTTEVLVQSEG 190
Query: 178 NVSKSKKVLTAMSRRMSRNKWI 199
V +S K L M+RRM+ N+ I
Sbjct: 191 YVDRSVKTLRGMARRMATNRII 212
>ZFIN|ZDB-GENE-050809-135 [details] [associations]
symbol:vti1a "vesicle transport through interaction
with t-SNAREs homolog 1A (yeast)" species:7955 "Danio rerio"
[GO:0016192 "vesicle-mediated transport" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006886 "intracellular protein
transport" evidence=IEA] InterPro:IPR000727 InterPro:IPR007705
InterPro:IPR010989 Pfam:PF05008 SMART:SM00397
ZFIN:ZDB-GENE-050809-135 GO:GO:0006886 GO:GO:0016020 GO:GO:0016192
GO:GO:0005622 SUPFAM:SSF47661 eggNOG:NOG239679 HOGENOM:HOG000116573
KO:K08493 CTD:143187 HOVERGEN:HBG104027 OrthoDB:EOG4V6ZHV
EMBL:BC099994 IPI:IPI00510396 RefSeq:NP_001030152.1
UniGene:Dr.134790 ProteinModelPortal:Q499B4 SMR:Q499B4
STRING:Q499B4 GeneID:567385 KEGG:dre:567385 InParanoid:Q499B4
NextBio:20888649 Uniprot:Q499B4
Length = 191
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 53/190 (27%), Positives = 95/190 (50%)
Query: 1 MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEAR 60
MS FE YE+ + ++A ++ K GE K Q V + L+E L+ +MDLE R
Sbjct: 1 MSSDFEAYEQDFGTLTAEITNKIGRIPKSAGEEKTQLVLNVDKQLEEVRELMEQMDLEVR 60
Query: 61 SLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQR 120
+ +A+ ++L+ YK ++ L+ + KR A DE+ + D ++S QR
Sbjct: 61 EIPIQSRAMYNSRLKSYKQEMEKLEKDFKRS-----RIAYSDEVRNELLGDDGSSSETQR 115
Query: 121 SRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVS 180
+ L+ +TER+ +S+ R++ + +ETE++G + + L D N+
Sbjct: 116 AHLLDNTERLERSSRRLEAGYQIAVETEQVGQEILANLHSDREKIQRSRDRLRETDANLG 175
Query: 181 KSKKVLTAMS 190
KS ++LT +S
Sbjct: 176 KSSRILTGIS 185
>UNIPROTKB|F1S5L0 [details] [associations]
symbol:VTI1A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016192 "vesicle-mediated transport" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0006886 "intracellular
protein transport" evidence=IEA] InterPro:IPR007705
InterPro:IPR010989 Pfam:PF05008 GO:GO:0005794 GO:GO:0006886
GO:GO:0016020 GO:GO:0042147 SUPFAM:SSF47661 OMA:YEQDFGT
GeneTree:ENSGT00530000063466 EMBL:CU468870
Ensembl:ENSSSCT00000011630 Uniprot:F1S5L0
Length = 152
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 44/147 (29%), Positives = 82/147 (55%)
Query: 1 MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEAR 60
MS FE YE+ + ++A ++ K L + KKQ V+ ++ L+EA+ L+ +MDLE R
Sbjct: 1 MSSDFEGYEQDFAVLTAEITNKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVR 60
Query: 61 SLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQR 120
+ P + + ++R YK ++ L+++ KR A DE+ + D +S +QR
Sbjct: 61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRS-----RIAYSDEVRNELLGDDGNSSENQR 115
Query: 121 SRLMMSTERVNQSTDRIKDSRRTMLET 147
+ L+ +TER+ +S+ R++ + +ET
Sbjct: 116 AHLLDNTERLERSSRRLEAGYQIAVET 142
>WB|WBGene00013302 [details] [associations]
symbol:vti-1 species:6239 "Caenorhabditis elegans"
[GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] InterPro:IPR000727 InterPro:IPR007705
InterPro:IPR010989 Pfam:PF05008 SMART:SM00397 GO:GO:0006886
GO:GO:0016020 GO:GO:0016192 EMBL:Z99281 GO:GO:0005622
SUPFAM:SSF47661 eggNOG:NOG239679 HOGENOM:HOG000116573 KO:K08493
GeneTree:ENSGT00530000063466 PIR:T27217 RefSeq:NP_502781.1
ProteinModelPortal:O18230 SMR:O18230 STRING:O18230 PaxDb:O18230
EnsemblMetazoa:Y57G11C.4 GeneID:178397 KEGG:cel:CELE_Y57G11C.4
UCSC:Y57G11C.4 CTD:178397 WormBase:Y57G11C.4 InParanoid:O18230
OMA:FMFLYIV NextBio:900962 Uniprot:O18230
Length = 224
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 50/195 (25%), Positives = 98/195 (50%)
Query: 8 YERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNV- 66
+E+QY +A ++ K +L + V EI+ L+E L+ +M+L R L+ N
Sbjct: 14 FEKQYSLQTAEITSKIGRVHTLPSSDRAGAVQEIRKSLEEVNDLLDQMELVVRELESNTT 73
Query: 67 -KAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMM 125
+ ++R Y+SD L +E+++ + A RDELL D L Q +L+
Sbjct: 74 ERTKYELRVRSYQSDKKQLDTELEKAIKRVREEADRDELL--AFDDQLDEHR-QEDQLIA 130
Query: 126 STERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVSKSKKV 185
+T+R+ +ST +++D+ R +ETE++G + + L + ++ ++ K
Sbjct: 131 NTQRLERSTRKVQDAHRIAVETEQIGAEMLSNLASQRETIGRSRDRLRQSNADLGRANKT 190
Query: 186 LTAMSRRMSRNKWII 200
L++M RR +N+ ++
Sbjct: 191 LSSMIRRAIQNRLLL 205
>DICTYBASE|DDB_G0292974 [details] [associations]
symbol:vti1A "v-SNARE family protein" species:44689
"Dictyostelium discoideum" [GO:0031201 "SNARE complex"
evidence=IDA] [GO:0000331 "contractile vacuole" evidence=IDA]
[GO:0032010 "phagolysosome" evidence=IDA] [GO:0016192
"vesicle-mediated transport" evidence=IEA;IDA] [GO:0010008
"endosome membrane" evidence=IEA;IDA] [GO:0006906 "vesicle fusion"
evidence=IDA] [GO:0005768 "endosome" evidence=IEA;IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0016020 "membrane"
evidence=IEA] [GO:0006886 "intracellular protein transport"
evidence=IEA] [GO:0031410 "cytoplasmic vesicle" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0015031
"protein transport" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0030665 "clathrin-coated vesicle membrane" evidence=IEA]
[GO:0030658 "transport vesicle membrane" evidence=IEA] [GO:0005789
"endoplasmic reticulum membrane" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000727
InterPro:IPR007705 InterPro:IPR010989 Pfam:PF05008 PROSITE:PS50192
dictyBase:DDB_G0292974 GO:GO:0016021 GO:GO:0006886
GenomeReviews:CM000155_GR GO:GO:0005789 EMBL:AAFI02000197
GO:GO:0010008 GO:GO:0032010 GO:GO:0000331 GO:GO:0030658
GO:GO:0030665 GO:GO:0031201 GO:GO:0006906 SUPFAM:SSF47661
eggNOG:NOG239679 KO:K08493 RefSeq:XP_629410.1
ProteinModelPortal:Q54CK6 IntAct:Q54CK6 STRING:Q54CK6 PRIDE:Q54CK6
EnsemblProtists:DDB0231536 GeneID:8628929 KEGG:ddi:DDB_G0292974
OMA:FERTEQN ProtClustDB:CLSZ2429346 Uniprot:Q54CK6
Length = 217
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 49/199 (24%), Positives = 98/199 (49%)
Query: 3 DVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSL 62
DVFER E+ + + +++++ + GE+KK V E++ +DEA I +M+ A++
Sbjct: 2 DVFERTEQNFQHVCNSITRRIKQLPNYGGEKKKIAVREVENDIDEALKFISEMEKLAQNH 61
Query: 63 QPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASAD-QRS 121
+K L K ++Y SD+ K EV+ + N + S D + D QR
Sbjct: 62 PQRIK--LQTKTKQYHSDIQKYKREVQLAQLQSSNQTNSNPW--SNAPDDYQSQYDNQRQ 117
Query: 122 RLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVSK 181
L+ + ++ ++DR+ + + ++E++G + LH DD +
Sbjct: 118 HLLQGSNMLDSTSDRLLRTHQISAQSEQIGQNILMDLGKQGEQIRGMRDKLHETDDQIKS 177
Query: 182 SKKVLTAMSRRMSRNKWII 200
++K++T ++RR++ NK I+
Sbjct: 178 ARKIMTGIARRLATNKVIL 196
>FB|FBgn0260862 [details] [associations]
symbol:Vti1 species:7227 "Drosophila melanogaster"
[GO:0005484 "SNAP receptor activity" evidence=ISS] [GO:0005886
"plasma membrane" evidence=ISS] [GO:0016192 "vesicle-mediated
transport" evidence=IEA;ISS] [GO:0006886 "intracellular protein
transport" evidence=IEA] InterPro:IPR007705 InterPro:IPR010989
Pfam:PF05008 GO:GO:0006886 EMBL:AE014296 GO:GO:0016020
GO:GO:0016192 GO:GO:0005622 GO:GO:0005484 SUPFAM:SSF47661
eggNOG:NOG239679 KO:K08493 OMA:QYCELST GeneTree:ENSGT00530000063466
EMBL:AY058584 RefSeq:NP_612053.1 UniGene:Dm.20008 SMR:Q9W0N6
IntAct:Q9W0N6 MINT:MINT-921667 STRING:Q9W0N6
EnsemblMetazoa:FBtr0072607 GeneID:38085 KEGG:dme:Dmel_CG3279
UCSC:CG3279-RA CTD:38085 FlyBase:FBgn0260862 InParanoid:Q9W0N6
OrthoDB:EOG43FFD3 GenomeRNAi:38085 NextBio:806919 Uniprot:Q9W0N6
Length = 230
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 49/199 (24%), Positives = 97/199 (48%)
Query: 4 VFERYERQYCEISANLSKKCTAAASLDGERKKQKV-SEIQTGLDEAESLIRKMDLEARSL 62
+ E+YE+QY + A ++ + ++ + S+I + L EA+ L+ +M LE R L
Sbjct: 3 LLEQYEQQYATLIAEITAHIGRLQQQNNNSERHDLCSKIDSSLPEAQELLEQMGLEVREL 62
Query: 63 QPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMA-DALTASADQRS 121
P +++ KL+ +++L L++E + + A L+ G + + ++ S DQR
Sbjct: 63 NPGLRSSFNGKLQVAQAELKRLQAEYRLTKDKQRSQANTFTTLDLGDSYEDVSISTDQRQ 122
Query: 122 RLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVSK 181
RL+ ++ER+ ++ +R+ + R LETE+LG A L + + +
Sbjct: 123 RLLDNSERIERTGNRLTEGYRVALETEQLGAQVLNDLHHQRETLQGARARLRETNAELGR 182
Query: 182 SKKVLTAMSRRMSRNKWII 200
+ + L M R R K ++
Sbjct: 183 ASRTLNTMMLRALREKVVL 201
>ZFIN|ZDB-GENE-040426-1148 [details] [associations]
symbol:vti1b "vesicle transport through
interaction with t-SNAREs homolog 1B (yeast)" species:7955 "Danio
rerio" [GO:0016020 "membrane" evidence=IEA] [GO:0016192
"vesicle-mediated transport" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] InterPro:IPR000727
InterPro:IPR007705 InterPro:IPR010989 Pfam:PF05008 PROSITE:PS50192
SMART:SM00397 ZFIN:ZDB-GENE-040426-1148 GO:GO:0006886 GO:GO:0016020
GO:GO:0016192 GO:GO:0005622 SUPFAM:SSF47661 HOGENOM:HOG000116573
KO:K08493 GeneTree:ENSGT00530000063466 CTD:10490 HOVERGEN:HBG058837
OrthoDB:EOG4M399K OMA:MMSKLRT EMBL:BX470227 EMBL:BC055131
IPI:IPI00498607 RefSeq:NP_957330.1 UniGene:Dr.82463 SMR:Q7SY45
STRING:Q7SY45 Ensembl:ENSDART00000057379 GeneID:394011
KEGG:dre:394011 InParanoid:Q7SY45 NextBio:20814976 Uniprot:Q7SY45
Length = 225
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 49/201 (24%), Positives = 91/201 (45%)
Query: 2 SDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARS 61
S+ FE+ Y + + GE +K+ V + + EAE +++ M+ E
Sbjct: 3 SEEFEKLHEMYKSLYDEVKLMPERVQKSQGEERKRIVRDFDERVSEAEEVLQGMEQELFG 62
Query: 62 LQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLE--SGMADALTASADQ 119
+ + + K+R Y+ DL L+ +++ + L D L + D T Q
Sbjct: 63 APSSFRTPMSTKIRLYRRDLAKLQRDIRLSATPGLTGQLGDSRLGVYASQNDQSTHLQSQ 122
Query: 120 RSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNTLHGVDDNV 179
R+ L+ TE +N ++ I+ S+R ET+++G + L +N+
Sbjct: 123 RALLIQGTESLNNASKSIERSQRIAAETDQIGTDIIEELGEQREQLDRTRDRLVNTGENL 182
Query: 180 SKSKKVLTAMSRRMSRNKWII 200
S+S+K+L AMSRR+ NK ++
Sbjct: 183 SRSRKILRAMSRRIVTNKLLL 203
>SGD|S000004810 [details] [associations]
symbol:VTI1 "Protein involved in cis-Golgi membrane traffic"
species:4932 "Saccharomyces cerevisiae" [GO:0005484 "SNAP receptor
activity" evidence=IDA] [GO:0006891 "intra-Golgi vesicle-mediated
transport" evidence=IMP] [GO:0006896 "Golgi to vacuole transport"
evidence=IMP] [GO:0016192 "vesicle-mediated transport"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] [GO:0042144
"vacuole fusion, non-autophagic" evidence=IMP] [GO:0031201 "SNARE
complex" evidence=IPI] [GO:0030173 "integral to Golgi membrane"
evidence=IDA] [GO:0006906 "vesicle fusion" evidence=IDA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0015031
"protein transport" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0000139 "Golgi membrane" evidence=IEA] [GO:0031902 "late
endosome membrane" evidence=IEA] InterPro:IPR000727
InterPro:IPR007705 InterPro:IPR010989 Pfam:PF05008 PROSITE:PS50192
SMART:SM00397 SGD:S000004810 GO:GO:0006886 GO:GO:0031902
GO:GO:0030173 EMBL:BK006946 GO:GO:0006891 GO:GO:0006896
GO:GO:0031201 GO:GO:0005484 GO:GO:0006906 GO:GO:0042144 EMBL:Z47815
PDB:3ONL PDBsum:3ONL SUPFAM:SSF47661 eggNOG:NOG239679
HOGENOM:HOG000116573 KO:K08493 GeneTree:ENSGT00530000063466
OrthoDB:EOG44F9KK EMBL:AF006074 PIR:S50926 RefSeq:NP_013924.1
PDB:3ONJ PDBsum:3ONJ ProteinModelPortal:Q04338 SMR:Q04338
DIP:DIP-2145N IntAct:Q04338 MINT:MINT-545063 STRING:Q04338
PaxDb:Q04338 PeptideAtlas:Q04338 EnsemblFungi:YMR197C GeneID:855237
KEGG:sce:YMR197C OMA:MIRMAND NextBio:978783 Genevestigator:Q04338
GermOnline:YMR197C Uniprot:Q04338
Length = 217
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 56/201 (27%), Positives = 91/201 (45%)
Query: 1 MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEAR 60
MS + YE + A S ++ + ++ DE L+ +MD+E
Sbjct: 1 MSSLLISYESDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVN 60
Query: 61 SL--QPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASAD 118
+ + +A AKLRE+K ++S++KR + +++ RD L G +A D
Sbjct: 61 NSIGDASERATYKAKLREWKK---TIQSDIKRPLQSLVDSGDRDRLF--GDLNASNIDDD 115
Query: 119 QRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNTLHGVDDN 178
QR +L+ + + +S DR+KD+ R ETE +G +A TL D
Sbjct: 116 QRQQLLSNHAILQKSGDRLKDASRIANETEGIGSQIMMDLRSQRETLENARQTLFQADSY 175
Query: 179 VSKSKKVLTAMSRRMSRNKWI 199
V KS K L M+RR+ NK+I
Sbjct: 176 VDKSIKTLKTMTRRLVANKFI 196
>POMBASE|SPBC3B9.10 [details] [associations]
symbol:vti1 "SNARE Vti1 (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0000324 "fungal-type vacuole"
evidence=IDA] [GO:0005484 "SNAP receptor activity" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0006886 "intracellular protein transport"
evidence=IEA] [GO:0006891 "intra-Golgi vesicle-mediated transport"
evidence=ISO] [GO:0006896 "Golgi to vacuole transport"
evidence=ISO] [GO:0030173 "integral to Golgi membrane"
evidence=ISO] [GO:0045324 "late endosome to vacuole transport"
evidence=ISO] [GO:0048278 "vesicle docking" evidence=IC]
InterPro:IPR000727 InterPro:IPR007705 InterPro:IPR010989
Pfam:PF05008 SMART:SM00397 PomBase:SPBC3B9.10 GO:GO:0006886
EMBL:CU329671 GO:GO:0030173 GenomeReviews:CU329671_GR GO:GO:0006891
GO:GO:0000324 GO:GO:0006896 GO:GO:0045324 GO:GO:0005484
GO:GO:0048278 SUPFAM:SSF47661 eggNOG:NOG239679 HOGENOM:HOG000116573
KO:K08493 EMBL:D89116 PIR:T40349 PIR:T42225 RefSeq:NP_596668.1
ProteinModelPortal:P78768 STRING:P78768 EnsemblFungi:SPBC3B9.10.1
GeneID:2540970 KEGG:spo:SPBC3B9.10 OMA:RKILSSM OrthoDB:EOG44F9KK
NextBio:20802085 Uniprot:P78768
Length = 214
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 51/196 (26%), Positives = 94/196 (47%)
Query: 6 ERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPN 65
E YE++Y + A++ +K S GE + Q L+E + +I +M++E + +
Sbjct: 2 ETYEQEYRLLRADIEEKLNDL-SKSGENSV--IQSCQRLLNEIDEVIGQMEIEITGIPTS 58
Query: 66 VKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAA---RDELLESGMADALTASADQRSR 122
+ ++ ++R Y+S L + +K + + A RDE SG A DQR+R
Sbjct: 59 ERGLVNGRIRSYRSTLEEWRRHLKEEIGKSDRKALFGNRDET--SGDYIASDQDYDQRTR 116
Query: 123 LMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVSKS 182
L+ T R+ QS+ R+ +S+R ETE +G H+ L ++ +S
Sbjct: 117 LLQGTNRLEQSSQRLLESQRIANETEGIGASILRDLHGQRNQLEHSLEMLGDTSGHLDRS 176
Query: 183 KKVLTAMSRRMSRNKW 198
+ L M+RR++ N++
Sbjct: 177 LRTLKTMARRLAMNRF 192
>MGI|MGI:1855688 [details] [associations]
symbol:Vti1b "vesicle transport through interaction with
t-SNAREs 1B" species:10090 "Mus musculus" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005794 "Golgi apparatus"
evidence=ISO;IDA] [GO:0006810 "transport" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] [GO:0015031
"protein transport" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016192 "vesicle-mediated transport" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IDA] InterPro:IPR000727
InterPro:IPR007705 InterPro:IPR010989 Pfam:PF05008 SMART:SM00397
MGI:MGI:1855688 GO:GO:0016021 GO:GO:0005794 GO:GO:0048471
GO:GO:0006886 GO:GO:0016192 SUPFAM:SSF47661 PDB:1GL2 PDBsum:1GL2
HOGENOM:HOG000116573 eggNOG:NOG291765 HOVERGEN:HBG058837
OrthoDB:EOG4M399K ChiTaRS:VTI1B EMBL:AF035208 IPI:IPI00130115
UniGene:Mm.265929 PDB:2QYW PDBsum:2QYW ProteinModelPortal:O88384
SMR:O88384 DIP:DIP-32212N IntAct:O88384 STRING:O88384
PhosphoSite:O88384 PaxDb:O88384 PRIDE:O88384 InParanoid:O88384
EvolutionaryTrace:O88384 Genevestigator:O88384
GermOnline:ENSMUSG00000021124 Uniprot:O88384
Length = 232
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 52/192 (27%), Positives = 86/192 (44%)
Query: 32 ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91
E KK+ V + EA + +M+ E R + +++KLR Y+ DL L EV+
Sbjct: 39 EEKKKLVRDFDENQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREVR-- 96
Query: 92 VSGNLNAA--ARDELLESGMA---DALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLE 146
S L AA R +L + L QR+ L+ TE +N++T I+ S R E
Sbjct: 97 -STPLTAAPGGRGDLKYGTYTLENEHLNRLQSQRALLLQGTESLNRATQSIERSHRIATE 155
Query: 147 TEELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTXXXX 206
T+++G + L ++N+SKS+K+L +MSR++ NK ++
Sbjct: 156 TDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLLSVIILL 215
Query: 207 XXXXXXXXXYFK 218
Y+K
Sbjct: 216 ELAILVGLVYYK 227
>UNIPROTKB|E1BUX5 [details] [associations]
symbol:VTI1B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0016192 "vesicle-mediated
transport" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000727 InterPro:IPR007705
InterPro:IPR010989 Pfam:PF05008 PROSITE:PS50192 SMART:SM00397
GO:GO:0005794 GO:GO:0006886 GO:GO:0016020 GO:GO:0016192
SUPFAM:SSF47661 KO:K08493 GeneTree:ENSGT00530000063466 CTD:10490
OMA:MMSKLRT EMBL:AADN02003184 IPI:IPI00572560 RefSeq:XP_421192.1
Ensembl:ENSGALT00000015509 GeneID:423273 KEGG:gga:423273
NextBio:20825766 Uniprot:E1BUX5
Length = 232
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 47/190 (24%), Positives = 88/190 (46%)
Query: 32 ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91
E KK+ + E EA +R+M+ E + + +++K+R Y+ DL+ + E+K
Sbjct: 39 EEKKKLIREFDEKQREANETLREMEEELKYAPLPFRNQMMSKIRAYRRDLSMFQREMKNT 98
Query: 92 VSGNLNAAARDEL---LESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETE 148
G L ++ ++ + S + T QR L+ TE +N+++ I+ S R ET+
Sbjct: 99 DLG-LGPGSQGDMKYGIFSTENEQSTNLQSQRVLLLQGTESLNRASQSIERSHRIAAETD 157
Query: 149 ELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTXXXXXX 208
++G + L +N+SKS+K+L +MSRR++ NK ++
Sbjct: 158 QIGTDIIEELGEQREQLERTKSRLVNTSENLSKSRKILRSMSRRIATNKLLLSIIIILEL 217
Query: 209 XXXXXXXYFK 218
Y+K
Sbjct: 218 AILGGVVYYK 227
>UNIPROTKB|Q2KIU0 [details] [associations]
symbol:VTI1B "Vesicle transport through interaction with
t-SNAREs homolog 1B" species:9913 "Bos taurus" [GO:0012505
"endomembrane system" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0016192 "vesicle-mediated transport"
evidence=IEA] [GO:0006886 "intracellular protein transport"
evidence=IEA] InterPro:IPR000727 InterPro:IPR007705
InterPro:IPR010989 Pfam:PF05008 SMART:SM00397 GO:GO:0016021
GO:GO:0006886 GO:GO:0016192 GO:GO:0012505 GO:GO:0005622
SUPFAM:SSF47661 HOGENOM:HOG000116573 KO:K08493 EMBL:BC112511
IPI:IPI00708043 RefSeq:NP_001073115.1 UniGene:Bt.2175
ProteinModelPortal:Q2KIU0 SMR:Q2KIU0 STRING:Q2KIU0 PRIDE:Q2KIU0
GeneID:780809 KEGG:bta:780809 CTD:10490 eggNOG:NOG291765
HOVERGEN:HBG058837 InParanoid:Q2KIU0 OrthoDB:EOG4M399K
NextBio:20924499 Uniprot:Q2KIU0
Length = 232
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 47/193 (24%), Positives = 86/193 (44%)
Query: 32 ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91
E KK+ + + EA + +M+ E R + + +++KLR Y+ DL L EV R
Sbjct: 39 EEKKKLIRDFDEKQQEANETLAEMEEELRYAPLSFRNPMMSKLRTYRKDLAKLHREV-RS 97
Query: 92 VSGNLNAAARDELLESGMA---DALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETE 148
AR ++ A + + QR+ L+ T+ +N++T I+ S R ET+
Sbjct: 98 TPLTATPGARGDMKYGTYAVENEHMNRLQSQRALLLQGTDSLNRATQSIERSHRIAAETD 157
Query: 149 ELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTXXXXXX 208
++G + L +N+SKS+K+L +MSR+++ NK ++
Sbjct: 158 QIGSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLLLSIVILLEL 217
Query: 209 XXXXXXXYFKLAK 221
Y+K +
Sbjct: 218 AILGGLVYYKFLR 230
>UNIPROTKB|F1N1Z0 [details] [associations]
symbol:VTI1B "Vesicle transport through interaction with
t-SNAREs homolog 1B" species:9913 "Bos taurus" [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0016192 "vesicle-mediated transport"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] InterPro:IPR000727
InterPro:IPR007705 InterPro:IPR010989 Pfam:PF05008 SMART:SM00397
GO:GO:0005794 GO:GO:0006886 GO:GO:0016020 GO:GO:0016192
SUPFAM:SSF47661 GeneTree:ENSGT00530000063466 IPI:IPI00708043
UniGene:Bt.2175 OMA:MMSKLRT EMBL:DAAA02029474
Ensembl:ENSBTAT00000002532 Uniprot:F1N1Z0
Length = 232
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 47/190 (24%), Positives = 85/190 (44%)
Query: 32 ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91
E KK+ + + EA + +M+ E R + + +++KLR Y+ DL L EV R
Sbjct: 39 EEKKKLIRDFDEKQQEANETLAEMEEELRYAPLSFRNPMMSKLRTYRKDLAKLHREV-RS 97
Query: 92 VSGNLNAAARDELLESGMA---DALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETE 148
AR ++ A + + QR+ L+ T+ +N++T I+ S R ET+
Sbjct: 98 TPLTATPGARGDMKYGTYAVENEHMNRLQSQRALLLQGTDSLNRATQSIERSHRIAAETD 157
Query: 149 ELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTXXXXXX 208
++G + L +N+SKS+K+L +MSR+++ NK ++
Sbjct: 158 QIGSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLLLSIVILLEL 217
Query: 209 XXXXXXXYFK 218
Y+K
Sbjct: 218 AILGGLVYYK 227
>UNIPROTKB|Q9UEU0 [details] [associations]
symbol:VTI1B "Vesicle transport through interaction with
t-SNAREs homolog 1B" species:9606 "Homo sapiens" [GO:0006886
"intracellular protein transport" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0012505 "endomembrane
system" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IDA]
[GO:0016192 "vesicle-mediated transport" evidence=TAS] [GO:0006904
"vesicle docking involved in exocytosis" evidence=TAS] [GO:0006944
"cellular membrane fusion" evidence=TAS] [GO:0008283 "cell
proliferation" evidence=TAS] InterPro:IPR000727 InterPro:IPR007705
InterPro:IPR010989 Pfam:PF05008 SMART:SM00397 GO:GO:0016021
GO:GO:0005794 GO:GO:0006886 GO:GO:0008283 GO:GO:0012505
GO:GO:0006944 GO:GO:0031201 GO:GO:0006904 PDB:2V8S PDBsum:2V8S
SUPFAM:SSF47661 HOGENOM:HOG000116573 KO:K08493 CTD:10490
eggNOG:NOG291765 HOVERGEN:HBG058837 OrthoDB:EOG4M399K EMBL:AF035824
EMBL:AF060902 EMBL:CR456757 EMBL:CR542095 EMBL:BT019348
EMBL:BC003142 IPI:IPI00063784 IPI:IPI00386818 RefSeq:NP_006361.1
UniGene:Hs.741177 ProteinModelPortal:Q9UEU0 SMR:Q9UEU0
IntAct:Q9UEU0 MINT:MINT-1429590 STRING:Q9UEU0 PhosphoSite:Q9UEU0
DMDM:126302613 PaxDb:Q9UEU0 PRIDE:Q9UEU0 DNASU:10490
Ensembl:ENST00000554659 GeneID:10490 KEGG:hsa:10490 UCSC:uc001xjt.3
GeneCards:GC14M068117 HGNC:HGNC:17793 MIM:603207 neXtProt:NX_Q9UEU0
PharmGKB:PA134861090 InParanoid:Q9UEU0 OMA:MMSKLRT PhylomeDB:Q9UEU0
ChiTaRS:VTI1B EvolutionaryTrace:Q9UEU0 GenomeRNAi:10490
NextBio:39804 ArrayExpress:Q9UEU0 Bgee:Q9UEU0 Genevestigator:Q9UEU0
GermOnline:ENSG00000100568 Uniprot:Q9UEU0
Length = 232
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 47/190 (24%), Positives = 84/190 (44%)
Query: 32 ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91
E KK+ + + EA + +M+ E R + + +++KLR Y+ DL L EV R
Sbjct: 39 EEKKKLIRDFDEKQQEANETLAEMEEELRYAPLSFRNPMMSKLRNYRKDLAKLHREV-RS 97
Query: 92 VSGNLNAAARDELLESGMA---DALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETE 148
R ++ A + + QR+ L+ TE +N++T I+ S R ET+
Sbjct: 98 TPLTATPGGRGDMKYGIYAVENEHMNRLQSQRAMLLQGTESLNRATQSIERSHRIATETD 157
Query: 149 ELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTXXXXXX 208
++G + L +N+SKS+K+L +MSR+++ NK ++
Sbjct: 158 QIGSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLLLSIIILLEL 217
Query: 209 XXXXXXXYFK 218
Y+K
Sbjct: 218 AILGGLVYYK 227
>RGD|1560475 [details] [associations]
symbol:RGD1560475 "similar to vesicle transport through
interaction with t-SNAREs 1B homolog" species:10116 "Rattus
norvegicus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] [GO:0012505
"endomembrane system" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016192 "vesicle-mediated transport" evidence=IEA] [GO:0031201
"SNARE complex" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] InterPro:IPR000727 InterPro:IPR007705
InterPro:IPR010989 Pfam:PF05008 SMART:SM00397 RGD:1560475
GO:GO:0016021 GO:GO:0005794 GO:GO:0006886 GO:GO:0016192
GO:GO:0012505 GO:GO:0031201 SUPFAM:SSF47661 HOGENOM:HOG000116573
HOVERGEN:HBG058837 OrthoDB:EOG4M399K EMBL:AC111403 EMBL:BF413866
IPI:IPI00197618 ProteinModelPortal:P58200 SMR:P58200 STRING:P58200
PRIDE:P58200 eggNOG:NOG114817 InParanoid:P58200 ArrayExpress:P58200
Genevestigator:P58200 Uniprot:P58200
Length = 232
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 49/190 (25%), Positives = 82/190 (43%)
Query: 32 ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91
E KK+ V + EA + +M+ E R + +++KLR Y+ DL L EV R
Sbjct: 39 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNSMMSKLRNYRKDLAKLHREV-RS 97
Query: 92 VSGNLNAAARDELLESGMA---DALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETE 148
R +L + L QR+ L+ TE +N++T I+ S R ET+
Sbjct: 98 TPLTATPGGRGDLKFGTYTLENEHLNRLQSQRALLLQGTESLNRATQSIERSHRIAAETD 157
Query: 149 ELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTXXXXXX 208
++G + L ++N+SKS+K+L +MSR++ NK ++
Sbjct: 158 QIGSEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLLSVIIVLEL 217
Query: 209 XXXXXXXYFK 218
Y+K
Sbjct: 218 AILVGLVYYK 227
>UNIPROTKB|P58200 [details] [associations]
symbol:Vti1b "Vesicle transport through interaction with
t-SNAREs homolog 1B" species:10116 "Rattus norvegicus" [GO:0006886
"intracellular protein transport" evidence=IEA] [GO:0016192
"vesicle-mediated transport" evidence=IEA] InterPro:IPR000727
InterPro:IPR007705 InterPro:IPR010989 Pfam:PF05008 SMART:SM00397
RGD:1560475 GO:GO:0016021 GO:GO:0005794 GO:GO:0006886 GO:GO:0016192
GO:GO:0012505 GO:GO:0031201 SUPFAM:SSF47661 HOGENOM:HOG000116573
HOVERGEN:HBG058837 OrthoDB:EOG4M399K EMBL:AC111403 EMBL:BF413866
IPI:IPI00197618 ProteinModelPortal:P58200 SMR:P58200 STRING:P58200
PRIDE:P58200 eggNOG:NOG114817 InParanoid:P58200 ArrayExpress:P58200
Genevestigator:P58200 Uniprot:P58200
Length = 232
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 49/190 (25%), Positives = 82/190 (43%)
Query: 32 ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91
E KK+ V + EA + +M+ E R + +++KLR Y+ DL L EV R
Sbjct: 39 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNSMMSKLRNYRKDLAKLHREV-RS 97
Query: 92 VSGNLNAAARDELLESGMA---DALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETE 148
R +L + L QR+ L+ TE +N++T I+ S R ET+
Sbjct: 98 TPLTATPGGRGDLKFGTYTLENEHLNRLQSQRALLLQGTESLNRATQSIERSHRIAAETD 157
Query: 149 ELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTXXXXXX 208
++G + L ++N+SKS+K+L +MSR++ NK ++
Sbjct: 158 QIGSEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLLSVIIVLEL 217
Query: 209 XXXXXXXYFK 218
Y+K
Sbjct: 218 AILVGLVYYK 227
>UNIPROTKB|F1SA25 [details] [associations]
symbol:VTI1B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0016192
"vesicle-mediated transport" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0006886 "intracellular protein transport"
evidence=IEA] InterPro:IPR000727 InterPro:IPR007705
InterPro:IPR010989 Pfam:PF05008 SMART:SM00397 GO:GO:0005794
GO:GO:0006886 GO:GO:0016020 GO:GO:0016192 SUPFAM:SSF47661
GeneTree:ENSGT00530000063466 OMA:MMSKLRT EMBL:CT868701
Ensembl:ENSSSCT00000002556 Uniprot:F1SA25
Length = 232
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 49/192 (25%), Positives = 87/192 (45%)
Query: 32 ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91
E KK+ + + EA + +M+ E R + + +++KLR Y+ DL L EV+
Sbjct: 39 EEKKKLIRDFDEKQQEANETLAEMEEELRYAPLSFRNPMMSKLRTYRKDLAKLHREVR-- 96
Query: 92 VSGNLNAA--ARDELLESGMA---DALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLE 146
S L AA R ++ A + + QR L+ T+ +N++T I+ S R E
Sbjct: 97 -STPLTAAPGGRGDMKYGTYAVEDEHMNRLQSQRVLLLQGTDSLNRATQSIERSHRIAAE 155
Query: 147 TEELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTXXXX 206
T+++G + L +N+SKS+K+L +MSR+++ NK ++
Sbjct: 156 TDQIGSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLLLSIVILL 215
Query: 207 XXXXXXXXXYFK 218
Y+K
Sbjct: 216 ELAILGGLVYYK 227
>UNIPROTKB|J9NYA0 [details] [associations]
symbol:VTI1B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016192 "vesicle-mediated transport"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] InterPro:IPR000727
InterPro:IPR007705 InterPro:IPR010989 Pfam:PF05008 SMART:SM00397
GO:GO:0006886 GO:GO:0016020 GO:GO:0016192 GO:GO:0005622
SUPFAM:SSF47661 GeneTree:ENSGT00530000063466 OMA:MMSKLRT
EMBL:AAEX03015851 Ensembl:ENSCAFT00000012309 Uniprot:J9NYA0
Length = 232
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 49/192 (25%), Positives = 87/192 (45%)
Query: 32 ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91
E KKQ + + EA + + +M+ E R + + +++KLR Y+ DL EV
Sbjct: 39 EEKKQLIRDFDEKQQEANATLAEMEEELRYAPLSFRNPMMSKLRTYRKDLAKPHREVS-- 96
Query: 92 VSGNLNAA--ARDELLESGMA---DALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLE 146
S L A R ++ A + +T QR+ L+ T+ +N++T I+ S R E
Sbjct: 97 -STPLTATPGGRGDMKYGSYAVENEHMTRLQSQRALLLQGTDSLNRATRSIERSHRIATE 155
Query: 147 TEELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTXXXX 206
T+++G + L DN+SKS+K+L +MSR+++ +K ++
Sbjct: 156 TDQIGSEIIEELGEQCDQLERTKSRLVNTSDNLSKSRKILRSMSRKVTTSKQLLSIVILL 215
Query: 207 XXXXXXXXXYFK 218
Y+K
Sbjct: 216 ELAILGGLVYYK 227
>UNIPROTKB|A0JNE7 [details] [associations]
symbol:VTI1A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042147 "retrograde transport, endosome to Golgi"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005484 "SNAP receptor activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006886 "intracellular protein
transport" evidence=IEA] InterPro:IPR007705 InterPro:IPR010989
Pfam:PF05008 GO:GO:0005794 GO:GO:0006886 GO:GO:0016020
GO:GO:0042147 SUPFAM:SSF47661 KO:K08493 CTD:143187
OrthoDB:EOG4V6ZHV GeneTree:ENSGT00530000063466 EMBL:DAAA02059233
EMBL:DAAA02059234 EMBL:DAAA02059235 EMBL:BC126647 IPI:IPI00695361
RefSeq:NP_001073260.1 UniGene:Bt.102434 SMR:A0JNE7 STRING:A0JNE7
Ensembl:ENSBTAT00000008830 GeneID:780850 KEGG:bta:780850
eggNOG:NOG289196 HOGENOM:HOG000234352 HOVERGEN:HBG070970
InParanoid:A0JNE7 OMA:SESQVEC NextBio:20924514 Uniprot:A0JNE7
Length = 117
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 29/90 (32%), Positives = 53/90 (58%)
Query: 1 MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEAR 60
MS FE YE+ + ++A ++ K L + KKQ V+ ++ L+EA+ L+ +MDLE R
Sbjct: 1 MSSDFEGYEQDFAVLTAEITNKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVR 60
Query: 61 SLQPNVKAVLLAKLREYKSDLNNLKSEVKR 90
+ P + + ++R YK ++ L+++ KR
Sbjct: 61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKR 90
>UNIPROTKB|E1BYU9 [details] [associations]
symbol:VTI1A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006886 "intracellular protein transport" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0016192 "vesicle-mediated
transport" evidence=IEA] InterPro:IPR007705 InterPro:IPR010989
Pfam:PF05008 GO:GO:0006886 GO:GO:0016020 GO:GO:0016192
GO:GO:0005622 SUPFAM:SSF47661 GeneTree:ENSGT00530000063466
EMBL:AADN02030905 IPI:IPI00593619 Ensembl:ENSGALT00000014430
Uniprot:E1BYU9
Length = 95
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 27/87 (31%), Positives = 53/87 (60%)
Query: 1 MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEAR 60
MS FE YE+ + ++A+++ + L G+ KKQ V+ I+ L+EA L+ +M+LE R
Sbjct: 1 MSSDFESYEQDFAVLTADITGRIGRVPKLLGDEKKQMVANIEKQLEEARELLEQMELEVR 60
Query: 61 SLQPNVKAVLLAKLREYKSDLNNLKSE 87
+ P + + +++R YK ++ L+++
Sbjct: 61 EIPPQSRGMYSSRMRSYKQEMGKLEAD 87
>UNIPROTKB|F1S5K8 [details] [associations]
symbol:F1S5K8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016192 "vesicle-mediated transport" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0006886 "intracellular
protein transport" evidence=IEA] InterPro:IPR007705
InterPro:IPR010989 Pfam:PF05008 GO:GO:0006886 GO:GO:0016020
GO:GO:0016192 GO:GO:0005622 SUPFAM:SSF47661
GeneTree:ENSGT00530000063466 OMA:SESQVEC EMBL:CU468154
Ensembl:ENSSSCT00000011631 Uniprot:F1S5K8
Length = 101
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 27/87 (31%), Positives = 51/87 (58%)
Query: 1 MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEAR 60
MS FE YE+ + ++A ++ K L + KKQ V+ ++ L+EA+ L+ +MDLE R
Sbjct: 1 MSSDFEGYEQDFAVLTAEITNKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVR 60
Query: 61 SLQPNVKAVLLAKLREYKSDLNNLKSE 87
+ P + + ++R YK ++ L+++
Sbjct: 61 EIPPQSRGMYSNRMRSYKQEMGKLETD 87
>RGD|2323682 [details] [associations]
symbol:LOC100359512 "vesicle transport through interaction with
t-SNAREs 1B-like" species:10116 "Rattus norvegicus" [GO:0006886
"intracellular protein transport" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0016192 "vesicle-mediated transport"
evidence=IEA] InterPro:IPR000727 InterPro:IPR007705
InterPro:IPR010989 Pfam:PF05008 SMART:SM00397 RGD:1560475
RGD:2323682 GO:GO:0005794 GO:GO:0006886 GO:GO:0016020 GO:GO:0016192
SUPFAM:SSF47661 GeneTree:ENSGT00530000063466 IPI:IPI00948301
Ensembl:ENSRNOT00000015814 ArrayExpress:F1LNC4 Uniprot:F1LNC4
Length = 231
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 48/171 (28%), Positives = 74/171 (43%)
Query: 32 ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91
E KK+ V + EA + +M+ E R P ++KLR Y+ DL L EV R
Sbjct: 39 EEKKKLVRDFDEKQQEANETLAEMEEELR-YAPLTFRNSMSKLRNYRKDLAKLHREV-RS 96
Query: 92 VSGNLNAAARDELLESGMA---DALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETE 148
R +L + L QR+ L+ TE +N++T I+ S R ET+
Sbjct: 97 TPLTATPGGRGDLKFGTYTLENEHLNRLQSQRALLLQGTESLNRATQSIERSHRIAAETD 156
Query: 149 ELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWI 199
++G + L ++N+SKS+K+L +MSR N I
Sbjct: 157 QIGSEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRNNLTNTLI 207
>UNIPROTKB|E2R276 [details] [associations]
symbol:VTI1A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016192 "vesicle-mediated transport"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0006886
"intracellular protein transport" evidence=IEA] InterPro:IPR007705
InterPro:IPR010989 Pfam:PF05008 GO:GO:0006886 GO:GO:0016020
GO:GO:0016192 GO:GO:0005622 SUPFAM:SSF47661
GeneTree:ENSGT00530000063466 EMBL:AAEX03015533
Ensembl:ENSCAFT00000017491 Uniprot:E2R276
Length = 95
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 27/87 (31%), Positives = 50/87 (57%)
Query: 1 MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEAR 60
MS FE YE+ + ++A ++ K L + KKQ V+ ++ L+EA L+ +MDLE R
Sbjct: 1 MSSDFEGYEQDFAVLTAEITGKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 60
Query: 61 SLQPNVKAVLLAKLREYKSDLNNLKSE 87
+ P + + ++R YK ++ L+++
Sbjct: 61 EIPPQSRGMYSNRMRSYKQEMGKLETD 87
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.125 0.327 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 221 194 0.00076 111 3 10 23 0.37 33
31 0.43 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 33
No. of states in DFA: 601 (64 KB)
Total size of DFA: 189 KB (2109 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 28.03u 0.06s 28.09t Elapsed: 00:00:02
Total cpu time: 28.03u 0.06s 28.09t Elapsed: 00:00:03
Start: Sat May 11 01:31:03 2013 End: Sat May 11 01:31:06 2013