BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027617
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2
SV=1
Length = 221
Score = 360 bits (923), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 169/221 (76%), Positives = 197/221 (89%)
Query: 1 MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEAR 60
MS FERYERQYCEISANLSKKCT+A +LDGE+KKQ +SEI++G++EAE+L++KMDLEAR
Sbjct: 1 MSQGFERYERQYCEISANLSKKCTSAIALDGEQKKQNLSEIKSGVEEAEALVKKMDLEAR 60
Query: 61 SLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQR 120
+L PNVK+ LL KLREYKSDLNN K+EVKR+ SGNLNA ARDELLE+GMAD LTASADQR
Sbjct: 61 NLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMADTLTASADQR 120
Query: 121 SRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVS 180
SRLMMST+ + ++TDRIKDSRRT+LETEELGVSILQDL QRQSLL AH TLHGVDDNV
Sbjct: 121 SRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHETLHGVDDNVG 180
Query: 181 KSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK 221
KSKK+LT M+RRM+RNKW IG ++ VLV+AII ILYFKL +
Sbjct: 181 KSKKILTTMTRRMNRNKWTIGAIITVLVLAIIFILYFKLTR 221
>sp|Q9SEL6|VTI11_ARATH Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1
SV=2
Length = 221
Score = 326 bits (836), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 162/221 (73%), Positives = 195/221 (88%)
Query: 1 MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEAR 60
MSDVF+ YERQYCE+SA+LSKKC++A SLDGE+KKQK+SEI++GL+ AE LIRKMDLEAR
Sbjct: 1 MSDVFDGYERQYCELSASLSKKCSSAISLDGEQKKQKLSEIKSGLENAEVLIRKMDLEAR 60
Query: 61 SLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQR 120
+L PN+K+ LL KLRE+KSDLNN K+EVKR+ SG LNAAARDELLE+GMAD TASADQR
Sbjct: 61 TLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR 120
Query: 121 SRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVS 180
+RLMMSTER+ ++TDR+KDSRRTM+ETEE+GVSILQDL QRQSLL AH TLHGVDDN+
Sbjct: 121 ARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETLHGVDDNIG 180
Query: 181 KSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK 221
KSKK+LT M+RRM++NKW IG ++ L+ AI +ILYFKL K
Sbjct: 181 KSKKILTDMTRRMNKNKWTIGAIIIALIAAIFIILYFKLTK 221
>sp|Q9SEL5|VTI12_ARATH Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1
SV=3
Length = 222
Score = 313 bits (803), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 151/221 (68%), Positives = 187/221 (84%), Gaps = 1/221 (0%)
Query: 1 MSDVFERYERQYCEISANLSKKCTAAASL-DGERKKQKVSEIQTGLDEAESLIRKMDLEA 59
MSDVFE YERQYCE+S NLS+KC +A+ L +GE KK K++EI++G+DEA+ LIRKMDLEA
Sbjct: 1 MSDVFEGYERQYCELSTNLSRKCHSASVLSNGEEKKGKIAEIKSGIDEADVLIRKMDLEA 60
Query: 60 RSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQ 119
RSLQP+ KAV L+KLREYKSDLN LK E KR+ S + ++R+EL+ESGMAD SADQ
Sbjct: 61 RSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQ 120
Query: 120 RSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNV 179
R RL MS ER++QS+DRI++SRR MLETEE+G+SI+QDLS QRQ+LLHAHN LHGVDD +
Sbjct: 121 RGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKLHGVDDAI 180
Query: 180 SKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLA 220
KSKKVLTAMSRRM+RNKWII +V+ LV+AIILI+ +KL+
Sbjct: 181 DKSKKVLTAMSRRMTRNKWIITSVIVALVLAIILIISYKLS 221
>sp|O89116|VTI1A_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Mus musculus GN=Vti1a PE=1 SV=1
Length = 217
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 126/217 (58%), Gaps = 5/217 (2%)
Query: 1 MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEAR 60
MS FE YE+ + ++A ++ K L + KKQ V+ ++ L+EA L+ +MDLE R
Sbjct: 1 MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 60
Query: 61 SLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQR 120
+ P + + ++R YK ++ L+++ KR A DE+ + DA +S +QR
Sbjct: 61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRS-----RIAYSDEVRNELLGDAGNSSENQR 115
Query: 121 SRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVS 180
+ L+ +TER+ +S+ R++ + +ETE++G +L++LS R+ + A + L D N+
Sbjct: 116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARDRLRDADANLG 175
Query: 181 KSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYF 217
KS ++LT M RR+ +N+ ++ + ++VIAI+ + F
Sbjct: 176 KSSRILTGMLRRIIQNRILLVILGIIVVIAILTAIAF 212
>sp|Q96AJ9|VTI1A_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Homo sapiens GN=VTI1A PE=1 SV=2
Length = 217
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 127/221 (57%), Gaps = 5/221 (2%)
Query: 1 MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEAR 60
MS FE YE+ + ++A ++ K L + KKQ V+ ++ L+EA+ L+ +MDLE R
Sbjct: 1 MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVR 60
Query: 61 SLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQR 120
+ P + + ++R YK ++ L+++ KR A DE+ + D +S +QR
Sbjct: 61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRS-----RIAYSDEVRNELLGDDGNSSENQR 115
Query: 121 SRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVS 180
+ L+ +TER+ +S+ R++ + +ETE++G +L++LS R+ + A L D N+
Sbjct: 116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDANLG 175
Query: 181 KSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK 221
KS ++LT M RR+ +N+ ++ + ++VI I++ + F + +
Sbjct: 176 KSSRILTGMLRRIIQNRILLVILGIIVVITILMAITFSVRR 216
>sp|Q9JI51|VTI1A_RAT Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Rattus norvegicus GN=Vti1a PE=1 SV=1
Length = 224
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 125/224 (55%), Gaps = 12/224 (5%)
Query: 1 MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEAR 60
MS FE YE+ + ++A ++ K + L + KKQ V+ ++ L+EA L+ +MDLE R
Sbjct: 1 MSADFEGYEQDFAVLTAEITSKISRVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVR 60
Query: 61 SLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQ- 119
+ P + + ++R YK ++ L+++ KR A DE+ + DA +S +Q
Sbjct: 61 EIPPQSRGMYSNRMRSYKQEMGKLETDFKRS-----RIAYSDEVRNELLGDAGNSSENQL 115
Query: 120 ------RSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLH 173
R+ L+ +TER+ +S+ R++ + +ETE++G +L++LS R+ + A L
Sbjct: 116 IKLREERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLR 175
Query: 174 GVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYF 217
D N+ KS ++LT M RR+ +N+ ++ + ++VI I+ + F
Sbjct: 176 ETDANLGKSSRILTGMLRRIIQNRILLVILGIIVVITILTAITF 219
>sp|Q54CK6|VTI1A_DICDI Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Dictyostelium discoideum GN=vti1A PE=1 SV=1
Length = 217
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 105/197 (53%), Gaps = 7/197 (3%)
Query: 3 DVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSL 62
DVFER E+ + + +++++ + GE+KK V E++ +DEA I +M+ A++
Sbjct: 2 DVFERTEQNFQHVCNSITRRIKQLPNYGGEKKKIAVREVENDIDEALKFISEMEKLAQNH 61
Query: 63 QPNVKAVLLAKLREYKSDLNNLKSEVK--RLVSGNLNAAARDELLESGMADALTASADQR 120
+K L K ++Y SD+ K EV+ +L S N + D + +QR
Sbjct: 62 PQRIK--LQTKTKQYHSDIQKYKREVQLAQLQSSN---QTNSNPWSNAPDDYQSQYDNQR 116
Query: 121 SRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVS 180
L+ + ++ ++DR+ + + ++E++G +IL DL Q + + + LH DD +
Sbjct: 117 QHLLQGSNMLDSTSDRLLRTHQISAQSEQIGQNILMDLGKQGEQIRGMRDKLHETDDQIK 176
Query: 181 KSKKVLTAMSRRMSRNK 197
++K++T ++RR++ NK
Sbjct: 177 SARKIMTGIARRLATNK 193
>sp|Q04338|VTI1_YEAST t-SNARE VTI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=VTI1 PE=1 SV=3
Length = 217
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 99/184 (53%), Gaps = 15/184 (8%)
Query: 25 AAASLDGERKKQKVSEIQTGL-------DEAESLIRKMDLEARSL--QPNVKAVLLAKLR 75
A ASL E Q +S+ T L DE L+ +MD+E + + +A AKLR
Sbjct: 19 AKASL-AEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLR 77
Query: 76 EYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTD 135
E+K ++S++KR + +++ RD L G +A DQR +L+ + + +S D
Sbjct: 78 EWK---KTIQSDIKRPLQSLVDSGDRDRLF--GDLNASNIDDDQRQQLLSNHAILQKSGD 132
Query: 136 RIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSR 195
R+KD+ R ETE +G I+ DL SQR++L +A TL D V KS K L M+RR+
Sbjct: 133 RLKDASRIANETEGIGSQIMMDLRSQRETLENARQTLFQADSYVDKSIKTLKTMTRRLVA 192
Query: 196 NKWI 199
NK+I
Sbjct: 193 NKFI 196
>sp|O88384|VTI1B_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Mus musculus GN=Vti1b PE=1 SV=1
Length = 232
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 107/198 (54%), Gaps = 14/198 (7%)
Query: 32 ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91
E KK+ V + EA + +M+ E R + +++KLR Y+ DL L EV+
Sbjct: 39 EEKKKLVRDFDENQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREVR-- 96
Query: 92 VSGNLNAA--ARDEL------LESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRT 143
S L AA R +L LE+ + L + QR+ L+ TE +N++T I+ S R
Sbjct: 97 -STPLTAAPGGRGDLKYGTYTLENEHLNRLQS---QRALLLQGTESLNRATQSIERSHRI 152
Query: 144 MLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTV 203
ET+++G I+++L QR L + L ++N+SKS+K+L +MSR++ NK ++ +
Sbjct: 153 ATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLLSVI 212
Query: 204 VAVLVIAIILILYFKLAK 221
+ + + ++ ++Y+K +
Sbjct: 213 ILLELAILVGLVYYKFFR 230
>sp|P58200|VTI1B_RAT Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Rattus norvegicus GN=Vti1b PE=1 SV=2
Length = 232
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 110/199 (55%), Gaps = 16/199 (8%)
Query: 32 ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91
E KK+ V + EA + +M+ E R + +++KLR Y+ DL L EV+
Sbjct: 39 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNSMMSKLRNYRKDLAKLHREVR-- 96
Query: 92 VSGNLNA--AARDEL------LESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRT 143
S L A R +L LE+ + L + QR+ L+ TE +N++T I+ S R
Sbjct: 97 -STPLTATPGGRGDLKFGTYTLENEHLNRLQS---QRALLLQGTESLNRATQSIERSHRI 152
Query: 144 MLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTV 203
ET+++G I+++L QR L + L ++N+SKS+K+L +MSR++ NK ++ +V
Sbjct: 153 AAETDQIGSEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLL-SV 211
Query: 204 VAVLVIAIIL-ILYFKLAK 221
+ VL +AI++ ++Y+K +
Sbjct: 212 IIVLELAILVGLVYYKFFR 230
>sp|P78768|VTI1_SCHPO Vesicle transport v-SNARE protein vti1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=vti1 PE=2 SV=2
Length = 214
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 107/203 (52%), Gaps = 18/203 (8%)
Query: 5 FERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQP 64
E YE++Y + A++ +K S GE + Q L+E + +I +M++E +
Sbjct: 1 METYEQEYRLLRADIEEKLN-DLSKSGE--NSVIQSCQRLLNEIDEVIGQMEIEITGIPT 57
Query: 65 NVKAVLLAKLREYKSDLN----NLKSEV----KRLVSGNLNAAARDELLESGMADALTAS 116
+ + ++ ++R Y+S L +LK E+ ++ + GN RDE SG A
Sbjct: 58 SERGLVNGRIRSYRSTLEEWRRHLKEEIGKSDRKALFGN-----RDET--SGDYIASDQD 110
Query: 117 ADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVD 176
DQR+RL+ T R+ QS+ R+ +S+R ETE +G SIL+DL QR L H+ L
Sbjct: 111 YDQRTRLLQGTNRLEQSSQRLLESQRIANETEGIGASILRDLHGQRNQLEHSLEMLGDTS 170
Query: 177 DNVSKSKKVLTAMSRRMSRNKWI 199
++ +S + L M+RR++ N++
Sbjct: 171 GHLDRSLRTLKTMARRLAMNRFF 193
>sp|Q2KIU0|VTI1B_BOVIN Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Bos taurus GN=VTI1B PE=2 SV=1
Length = 232
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 107/194 (55%), Gaps = 10/194 (5%)
Query: 32 ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91
E KK+ + + EA + +M+ E R + + +++KLR Y+ DL L EV+
Sbjct: 39 EEKKKLIRDFDEKQQEANETLAEMEEELRYAPLSFRNPMMSKLRTYRKDLAKLHREVR-- 96
Query: 92 VSGNLNA--AARDELLESGMA---DALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLE 146
S L A AR ++ A + + QR+ L+ T+ +N++T I+ S R E
Sbjct: 97 -STPLTATPGARGDMKYGTYAVENEHMNRLQSQRALLLQGTDSLNRATQSIERSHRIAAE 155
Query: 147 TEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAV 206
T+++G I+++L QR L + L +N+SKS+K+L +MSR+++ NK ++ ++V +
Sbjct: 156 TDQIGSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLLL-SIVIL 214
Query: 207 LVIAII-LILYFKL 219
L +AI+ ++Y+K
Sbjct: 215 LELAILGGLVYYKF 228
>sp|Q9UEU0|VTI1B_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Homo sapiens GN=VTI1B PE=1 SV=3
Length = 232
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 100/193 (51%), Gaps = 4/193 (2%)
Query: 32 ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91
E KK+ + + EA + +M+ E R + + +++KLR Y+ DL L EV R
Sbjct: 39 EEKKKLIRDFDEKQQEANETLAEMEEELRYAPLSFRNPMMSKLRNYRKDLAKLHREV-RS 97
Query: 92 VSGNLNAAARDELLESGMA---DALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETE 148
R ++ A + + QR+ L+ TE +N++T I+ S R ET+
Sbjct: 98 TPLTATPGGRGDMKYGIYAVENEHMNRLQSQRAMLLQGTESLNRATQSIERSHRIATETD 157
Query: 149 ELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLV 208
++G I+++L QR L + L +N+SKS+K+L +MSR+++ NK ++ ++ + +
Sbjct: 158 QIGSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLLLSIIILLEL 217
Query: 209 IAIILILYFKLAK 221
+ ++Y+K +
Sbjct: 218 AILGGLVYYKFFR 230
>sp|Q9VRL2|GOSR2_DROME Probable Golgi SNAP receptor complex member 2 OS=Drosophila
melanogaster GN=membrin PE=2 SV=1
Length = 216
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 151 GVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRM--SRNKWIIGTVVAVLV 208
G IL+ L SQR +L AH + + + S + + RR+ R +I G VV +L+
Sbjct: 147 GSGILESLISQRMTLGGAHKRIQAIGSTLGLSNHTMKLIERRLVEDRRIFIGGVVVTLLI 206
Query: 209 IAIILILYF 217
IA LI+YF
Sbjct: 207 IA--LIIYF 213
>sp|Q9SJL6|MEM11_ARATH Membrin-11 OS=Arabidopsis thaliana GN=MEMB11 PE=1 SV=1
Length = 225
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 110 ADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAH 169
AD L ++ + + ++ + Q+ +K+S+R + E+ GV+IL + QR L A
Sbjct: 116 ADLLGRASGEGAHILQIFDEEAQAMSSVKNSKRMLEESFSSGVAILSKYAEQRDRLKSAQ 175
Query: 170 NTLHGVDDNVSKSKKVLTAMSRRMSRNKWI-IGTVVAVLVIAIILILY 216
V + V S VL + RR + WI ++A LVI + I +
Sbjct: 176 RKALDVLNTVGLSNSVLRLIERRNRVDTWIKYAGMIATLVILYLFIRW 223
>sp|Q9FK28|MEM12_ARATH Membrin-12 OS=Arabidopsis thaliana GN=MEMB12 PE=2 SV=1
Length = 219
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 110 ADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAH 169
AD L + + + ++ + Q + +K+S+R + ++ + GV+IL + QR L A
Sbjct: 110 ADLLGRGSGEGAHILQIFDEEAQGMNSVKNSKRMLEDSFQSGVAILSKYAEQRDRLKSAQ 169
Query: 170 NTLHGVDDNVSKSKKVLTAMSRRMSRNKWI-IGTVVAVLVIAIILILY 216
V + V S VL + RR + WI ++A LVI + I +
Sbjct: 170 RKALDVLNTVGLSNSVLRLIERRNRVDTWIKYAGMIATLVILYLFIRW 217
>sp|Q92922|SMRC1_HUMAN SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1
SV=3
Length = 1105
Score = 37.0 bits (84), Expect = 0.097, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 27 ASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKS 86
ASL G+R+ QK DE E L + D+E + PN++ V+L K K D N +
Sbjct: 349 ASLYGKRRSQKEE------DEQEDLTK--DMEDPTPVPNIEEVVLPKNVNLKKDSEN--T 398
Query: 87 EVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRI 137
VK +L+ + + G D A DQ + + + V + T+ I
Sbjct: 399 PVKGGTVADLDEQDEETVTAGGKEDEDPAKGDQSRSVDLGEDNVTEQTNHI 449
>sp|Q5RBL6|GOSR1_PONAB Golgi SNAP receptor complex member 1 OS=Pongo abelii GN=GOSR1 PE=2
SV=1
Length = 248
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/158 (18%), Positives = 76/158 (48%), Gaps = 11/158 (6%)
Query: 64 PNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD-----ALTASAD 118
P++ A L+ L+ ++ L + E + + ++ R+ L+ S D + + +
Sbjct: 96 PSLNAALMHTLQRHRDILQDYTHEFHKTKANFMSIRERENLMGSVRKDIESYKSGSGVNN 155
Query: 119 QRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDN 178
+R+ L + + D +++S R + ET + ++ ++++SQR L H+ ++ + +
Sbjct: 156 RRTELFL------KEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANR 209
Query: 179 VSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILY 216
++ ++ R R+ I+G V+ + I ++L +
Sbjct: 210 FPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLYAF 247
>sp|O95249|GOSR1_HUMAN Golgi SNAP receptor complex member 1 OS=Homo sapiens GN=GOSR1 PE=1
SV=1
Length = 250
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/158 (18%), Positives = 75/158 (47%), Gaps = 11/158 (6%)
Query: 64 PNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD-----ALTASAD 118
P++ A L+ L+ ++ L + E + + + R+ L+ S D + + +
Sbjct: 98 PSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNN 157
Query: 119 QRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDN 178
+R+ L + + D +++S R + ET + ++ ++++SQR L H+ ++ + +
Sbjct: 158 RRTELFL------KEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANR 211
Query: 179 VSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILY 216
++ ++ R R+ I+G V+ + I ++L +
Sbjct: 212 FPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLYAF 249
>sp|O08522|GOSR1_CRIGR Golgi SNAP receptor complex member 1 OS=Cricetulus griseus GN=GOSR1
PE=1 SV=1
Length = 250
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/158 (18%), Positives = 75/158 (47%), Gaps = 11/158 (6%)
Query: 64 PNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD-----ALTASAD 118
P++ A L+ L+ ++ L + E + + + R+ L+ S D + + +
Sbjct: 98 PSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNN 157
Query: 119 QRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDN 178
+R+ L + + D +++S R + ET + ++ ++++SQR L H+ ++ + +
Sbjct: 158 RRTELFL------KEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANR 211
Query: 179 VSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILY 216
++ ++ R R+ I+G V+ + I ++L +
Sbjct: 212 FPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLYAF 249
>sp|Q62931|GOSR1_RAT Golgi SNAP receptor complex member 1 OS=Rattus norvegicus GN=Gosr1
PE=1 SV=1
Length = 250
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/158 (18%), Positives = 75/158 (47%), Gaps = 11/158 (6%)
Query: 64 PNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD-----ALTASAD 118
P++ A L+ L+ ++ L + E + + + R+ L+ S D + + +
Sbjct: 98 PSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNN 157
Query: 119 QRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDN 178
+R+ L + + D +++S R + ET + ++ ++++SQR L H+ ++ + +
Sbjct: 158 RRTELFL------KEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANR 211
Query: 179 VSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILY 216
++ ++ R R+ I+G V+ + I ++L +
Sbjct: 212 FPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLYAF 249
>sp|O88630|GOSR1_MOUSE Golgi SNAP receptor complex member 1 OS=Mus musculus GN=Gosr1 PE=1
SV=2
Length = 250
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/158 (18%), Positives = 74/158 (46%), Gaps = 11/158 (6%)
Query: 64 PNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD-----ALTASAD 118
P++ A L+ L+ ++ L + E + + R+ L+ S D + + +
Sbjct: 98 PSLNAALMHTLQRHRDILQDYTHEFHKTKANFTAIRERENLMGSVRKDIESYKSGSGVNN 157
Query: 119 QRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDN 178
+R+ L + + D +++S R + ET + ++ ++++SQR L H+ ++ + +
Sbjct: 158 RRTELFL------KEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANR 211
Query: 179 VSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILY 216
++ ++ R R+ I+G V+ + I ++L +
Sbjct: 212 FPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLYAF 249
>sp|Q9FFK1|SYP31_ARATH Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1
Length = 336
Score = 34.3 bits (77), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 178 NVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYF 217
NV ++ L R+S N+W++ + AV+++ +I+ L+F
Sbjct: 295 NVEGARSALLQHLTRISSNRWLMMKIFAVIILFLIVFLFF 334
>sp|Q60902|EP15R_MOUSE Epidermal growth factor receptor substrate 15-like 1 OS=Mus
musculus GN=Eps15l1 PE=1 SV=3
Length = 907
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 16/155 (10%)
Query: 33 RKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAV--LLAKLREYKSDL-NNLKSEVK 89
+K +V E+Q LD S +++++ + + Q + + AKLR+ SD+ + E +
Sbjct: 414 QKTSEVQELQNDLDRETSSLQELEAQKQDAQDRLDEMDQQKAKLRDMLSDVRQKCQDETQ 473
Query: 90 RLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEE 149
+ S +++ L+S D L + + +RL ++ QS + R LET
Sbjct: 474 TISSLKTQIQSQESDLKS-QEDDLNRAKSELNRLQQEETQLEQSI----QAGRAQLETIL 528
Query: 150 LGVSILQD--------LSSQRQSLLHAHNTLHGVD 176
+ QD LS ++S L AH +L D
Sbjct: 529 RSLKCTQDDINQARSKLSQLQESHLEAHRSLEQYD 563
>sp|Q2TBU3|GOSR1_BOVIN Golgi SNAP receptor complex member 1 OS=Bos taurus GN=GOSR1 PE=2
SV=1
Length = 250
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/158 (18%), Positives = 74/158 (46%), Gaps = 11/158 (6%)
Query: 64 PNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD-----ALTASAD 118
P++ A L+ L+ ++ L + E + + + R+ L+ S D + + +
Sbjct: 98 PSLNAALMHTLQRHRDILQDYTHEFHKTKANFVAIRERENLMGSVRKDIESYKSGSGVNN 157
Query: 119 QRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDN 178
+R+ L + + D +++S R + ET + ++ ++++SQR L + ++ + +
Sbjct: 158 RRTELFL------KEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIQSKMNTLANR 211
Query: 179 VSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILY 216
++ ++ R R+ I+G V+ V I ++L +
Sbjct: 212 FPAVNSLIQRINLRKRRDSLILGGVIGVCTILLLLYAF 249
>sp|Q8GXD6|RH49_ARATH DEAD-box ATP-dependent RNA helicase 49 OS=Arabidopsis thaliana
GN=RH49 PE=2 SV=2
Length = 558
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 64 PNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNL----NAAARDELLESGMADALTASADQ 119
PNV +VLL RE ++D+N L+ E L+ G + R E L+ + L
Sbjct: 118 PNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEAD 177
Query: 120 RSRLMMSTERVNQSTDRIKDSRRTML 145
R M ++VN R+ RRT L
Sbjct: 178 RLLDMGFQKQVNYIISRLPKQRRTGL 203
>sp|O35165|GOSR2_RAT Golgi SNAP receptor complex member 2 OS=Rattus norvegicus GN=Gosr2
PE=1 SV=2
Length = 212
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 103/228 (45%), Gaps = 28/228 (12%)
Query: 1 MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKV----SEIQTGLDEAESLIRKMD 56
M ++++ +Q EI +++ + TA KQ V +EIQ +D+ S + +++
Sbjct: 1 MEPLYQQTHKQVHEIQSHMGRLETA--------DKQSVHLVENEIQASIDQIFSHLERLE 52
Query: 57 LEARSLQPNVKAVLLAKLR--EYKSDLNNLKSEVK----RLVSGNLNAAARDELLESGMA 110
+ + PN + AKLR + K D+ +L++ ++ R + RDELL +
Sbjct: 53 ILSSKEPPNRRQN--AKLRVDQLKYDVQHLQTALRNFQHRRQAKEQQERQRDELL----S 106
Query: 111 DALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHN 170
T + + M + + N S I ++ G SIL+ L +QR +L
Sbjct: 107 RTFTTNDSDTTIPMDESLQFNSSLQNIHHGMDDLIGG---GHSILEGLRAQRLTLKGTQK 163
Query: 171 TLHGVDDNVSKSKKVLTAMSRRMSRNKW-IIGTVVAVLVIAIILILYF 217
+ + + + S V+ + +R ++K+ +IG ++ + +++ Y
Sbjct: 164 KILDIANMLGLSNTVMRLIEKRAFQDKYFMIGGMLLTCAVMFLVVQYL 211
>sp|Q9VE50|GOSR1_DROME Golgi SNAP receptor complex member 1 OS=Drosophila melanogaster
GN=Gos28 PE=2 SV=1
Length = 232
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 84/182 (46%), Gaps = 22/182 (12%)
Query: 46 DEAESLIRKMDL--EARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDE 103
+E E ++ K+ E+ S P A + L+ ++ L + E ++ + + R+E
Sbjct: 61 EEIEQMLEKLSSLNESMSDLPASGAAAMHTLQRHREILQGYRQEFNKICANHTMRIEREE 120
Query: 104 LLE-SGMADALTASA----DQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDL 158
LL SG+A + + + ++R + + +N ++ + D +ET + L
Sbjct: 121 LLRGSGLATSSGSPSISGLNRREMYLKESGHLNSASHLVNDQINIAIETRD-------HL 173
Query: 159 SSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMS----RNKWIIGTVVAVLVIAIILI 214
+QRQ A L +++S +++++ +R++ R+ I+G V+ VI ++L
Sbjct: 174 HAQRQ----AFKRLQTRFNDISNRFPLISSLIQRINIKKRRDSLILGAVIGFCVILLLLY 229
Query: 215 LY 216
+
Sbjct: 230 AF 231
>sp|Q9UBC2|EP15R_HUMAN Epidermal growth factor receptor substrate 15-like 1 OS=Homo
sapiens GN=EPS15L1 PE=1 SV=1
Length = 864
Score = 31.2 bits (69), Expect = 5.9, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 14/154 (9%)
Query: 33 RKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAV--LLAKLREYKSDLNNLKSEVKR 90
+K +V E+Q LD S +++++ + + Q + + AKLR+ SD+ + +
Sbjct: 416 QKTSEVQELQNDLDRETSSLQELEAQKQDAQDRLDEMDQQKAKLRDMLSDVRQKCQDETQ 475
Query: 91 LVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEEL 150
++S E D L + + +RL ++ QS + R LET
Sbjct: 476 MISSLKTQIQSQESDLKSQEDDLNRAKSELNRLQQEETQLEQSI----QAGRVQLETIIK 531
Query: 151 GVSILQD--------LSSQRQSLLHAHNTLHGVD 176
+ QD LS +S AH +L D
Sbjct: 532 SLKSTQDEINQARSKLSQLHESRQEAHRSLEQYD 565
>sp|Q0JXE7|BPE_ARATH Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1
Length = 343
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 24 TAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNN 83
T AS +GE K+QK+ E+ G EAESL + + + + ++P + + R +D ++
Sbjct: 90 TIGAS-EGENKRQKIDEVCDGKAEAESLGTETEQKKQQMEPTKDYIHVRARRGQATDSHS 148
Query: 84 LKSEVKR 90
L +R
Sbjct: 149 LAERARR 155
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.127 0.328
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,611,638
Number of Sequences: 539616
Number of extensions: 2093498
Number of successful extensions: 11863
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 339
Number of HSP's that attempted gapping in prelim test: 11633
Number of HSP's gapped (non-prelim): 560
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)