Query 027617
Match_columns 221
No_of_seqs 140 out of 808
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 12:38:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027617.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027617hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1666 V-SNARE [Intracellular 100.0 9.7E-50 2.1E-54 306.8 26.7 220 1-220 1-220 (220)
2 KOG3251 Golgi SNAP receptor co 99.9 1.5E-24 3.2E-29 168.5 21.8 206 1-217 1-211 (213)
3 KOG3208 SNARE protein GS28 [In 99.9 2.7E-23 5.9E-28 161.1 19.5 210 1-216 3-230 (231)
4 PF05008 V-SNARE: Vesicle tran 99.6 2.4E-14 5.2E-19 97.2 11.6 79 12-90 1-79 (79)
5 PF12352 V-SNARE_C: Snare regi 99.5 3.2E-14 7E-19 93.2 8.2 66 128-193 1-66 (66)
6 PF03908 Sec20: Sec20; InterP 99.5 3.3E-13 7.3E-18 94.1 11.8 88 132-219 5-92 (92)
7 KOG3202 SNARE protein TLG1/Syn 98.7 3.3E-05 7.1E-10 62.4 22.5 190 4-197 8-213 (235)
8 KOG0812 SNARE protein SED5/Syn 98.4 0.00089 1.9E-08 55.0 23.8 78 133-210 225-302 (311)
9 PF09753 Use1: Membrane fusion 98.1 0.00071 1.5E-08 55.8 19.0 82 137-220 169-251 (251)
10 KOG0809 SNARE protein TLG2/Syn 98.0 0.0036 7.8E-08 51.7 19.8 193 5-197 59-280 (305)
11 PF00957 Synaptobrevin: Synapt 97.9 0.00039 8.5E-09 47.9 11.6 86 134-219 2-87 (89)
12 KOG0810 SNARE protein Syntaxin 97.9 0.0098 2.1E-07 50.0 22.3 83 132-214 203-288 (297)
13 COG5074 t-SNARE complex subuni 97.9 0.0081 1.8E-07 48.1 20.0 81 134-215 184-268 (280)
14 KOG0860 Synaptobrevin/VAMP-lik 97.6 0.0017 3.7E-08 46.4 10.9 83 134-216 28-114 (116)
15 KOG3385 V-SNARE [Intracellular 97.4 0.0011 2.3E-08 47.1 7.7 80 135-216 36-115 (118)
16 KOG0811 SNARE protein PEP12/VA 97.3 0.083 1.8E-06 43.8 24.6 89 131-219 176-267 (269)
17 COG5325 t-SNARE complex subuni 97.1 0.11 2.3E-06 42.8 24.1 87 133-219 193-280 (283)
18 smart00397 t_SNARE Helical reg 96.9 0.0098 2.1E-07 37.9 7.6 61 128-188 5-65 (66)
19 KOG3894 SNARE protein Syntaxin 96.9 0.22 4.8E-06 41.8 19.1 87 131-217 228-314 (316)
20 KOG3065 SNAP-25 (synaptosome-a 96.8 0.0054 1.2E-07 50.9 7.5 62 130-191 74-135 (273)
21 KOG2678 Predicted membrane pro 96.8 0.2 4.4E-06 40.0 16.0 79 143-221 163-241 (244)
22 PF04210 MtrG: Tetrahydrometha 96.1 0.058 1.3E-06 34.8 7.1 58 163-220 12-70 (70)
23 KOG1666 V-SNARE [Intracellular 96.0 0.59 1.3E-05 37.1 18.4 85 123-210 130-215 (220)
24 PF05739 SNARE: SNARE domain; 96.0 0.12 2.5E-06 32.8 8.6 59 134-192 3-61 (63)
25 PRK01026 tetrahydromethanopter 95.7 0.11 2.3E-06 34.4 7.3 58 163-220 15-73 (77)
26 TIGR01149 mtrG N5-methyltetrah 95.6 0.13 2.8E-06 33.2 7.4 57 164-220 13-70 (70)
27 PRK10884 SH3 domain-containing 95.6 0.59 1.3E-05 37.3 12.8 69 144-215 123-191 (206)
28 COG4064 MtrG Tetrahydromethano 95.6 0.1 2.2E-06 33.6 6.6 55 166-220 18-73 (75)
29 PF00957 Synaptobrevin: Synapt 94.8 0.82 1.8E-05 31.1 11.1 55 155-215 33-87 (89)
30 cd00193 t_SNARE Soluble NSF (N 94.6 0.3 6.4E-06 30.2 7.0 55 134-188 5-59 (60)
31 PF06160 EzrA: Septation ring 94.2 4.5 9.8E-05 37.4 17.8 84 9-95 251-336 (560)
32 PF09889 DUF2116: Uncharacteri 93.8 0.27 5.8E-06 31.0 5.3 33 184-216 26-58 (59)
33 PF06008 Laminin_I: Laminin Do 91.6 6.9 0.00015 32.4 19.3 77 5-84 54-139 (264)
34 KOG0859 Synaptobrevin/VAMP-lik 91.1 0.96 2.1E-05 35.6 6.4 84 134-217 124-207 (217)
35 PF06008 Laminin_I: Laminin Do 90.9 8.2 0.00018 31.9 18.6 32 128-159 192-223 (264)
36 PF12911 OppC_N: N-terminal TM 90.3 0.4 8.8E-06 29.6 3.2 32 184-215 3-34 (56)
37 PF03904 DUF334: Domain of unk 90.1 8.8 0.00019 30.9 14.8 29 146-174 110-138 (230)
38 PF05478 Prominin: Prominin; 89.3 22 0.00048 34.4 22.6 89 129-217 336-433 (806)
39 PRK04778 septation ring format 89.2 19 0.0004 33.4 17.5 83 9-94 255-339 (569)
40 KOG0862 Synaptobrevin/VAMP-lik 89.1 9.1 0.0002 30.6 10.5 65 135-199 134-198 (216)
41 PF15188 CCDC-167: Coiled-coil 88.8 4.5 9.7E-05 27.5 7.5 57 37-93 6-64 (85)
42 PF09889 DUF2116: Uncharacteri 87.7 2.5 5.5E-05 26.6 5.4 33 188-220 27-59 (59)
43 PRK15422 septal ring assembly 86.8 7.2 0.00016 26.0 9.8 50 41-91 23-72 (79)
44 PF09753 Use1: Membrane fusion 86.7 9.3 0.0002 31.4 9.8 20 39-58 27-46 (251)
45 KOG4603 TBP-1 interacting prot 85.7 6.2 0.00013 30.4 7.5 58 37-94 87-145 (201)
46 PRK14762 membrane protein; Pro 85.4 1 2.2E-05 22.9 2.1 18 197-214 2-19 (27)
47 PHA02650 hypothetical protein; 85.4 1.7 3.7E-05 28.8 3.8 25 197-221 50-74 (81)
48 TIGR01294 P_lamban phospholamb 85.1 3.4 7.4E-05 24.2 4.6 28 189-216 23-50 (52)
49 PHA03240 envelope glycoprotein 85.0 0.99 2.1E-05 35.9 3.1 21 199-219 213-233 (258)
50 PF10805 DUF2730: Protein of u 84.5 11 0.00024 26.6 8.1 58 35-92 34-92 (106)
51 KOG3208 SNARE protein GS28 [In 84.3 20 0.00043 28.8 19.1 151 4-183 52-204 (231)
52 PHA02819 hypothetical protein; 83.8 2.3 5.1E-05 27.5 3.8 24 198-221 48-71 (71)
53 PF12669 P12: Virus attachment 83.4 0.76 1.6E-05 28.9 1.5 8 213-220 14-21 (58)
54 PF04272 Phospholamban: Phosph 83.4 4.2 9.2E-05 23.9 4.4 27 190-216 24-50 (52)
55 PF08114 PMP1_2: ATPase proteo 83.0 1.6 3.5E-05 25.1 2.6 22 199-220 13-34 (43)
56 PHA02844 putative transmembran 82.6 2.4 5.2E-05 27.8 3.6 24 198-221 50-73 (75)
57 PF10779 XhlA: Haemolysin XhlA 82.2 11 0.00024 24.4 8.4 24 193-216 47-70 (71)
58 COG3074 Uncharacterized protei 81.6 12 0.00026 24.3 9.2 17 1-17 1-18 (79)
59 PF05283 MGC-24: Multi-glycosy 81.5 1.6 3.5E-05 34.2 3.0 22 200-221 164-185 (186)
60 PF06024 DUF912: Nucleopolyhed 81.1 0.9 1.9E-05 32.0 1.4 22 196-217 62-83 (101)
61 PF04678 DUF607: Protein of un 80.6 19 0.00041 28.0 8.8 50 171-220 65-115 (180)
62 PF12128 DUF3584: Protein of u 80.2 73 0.0016 32.5 19.4 17 163-179 518-534 (1201)
63 KOG3065 SNAP-25 (synaptosome-a 80.1 7.6 0.00016 32.4 6.7 58 132-189 215-272 (273)
64 PHA03164 hypothetical protein; 80.0 2.5 5.4E-05 27.8 3.0 21 197-217 60-80 (88)
65 PF12575 DUF3753: Protein of u 79.8 3 6.5E-05 27.3 3.3 22 198-219 50-71 (72)
66 PF14937 DUF4500: Domain of un 79.7 2.5 5.3E-05 28.6 3.0 26 194-219 34-59 (86)
67 PRK14065 exodeoxyribonuclease 79.7 10 0.00022 25.7 5.8 54 10-63 25-80 (86)
68 PF08702 Fib_alpha: Fibrinogen 79.5 24 0.00052 26.5 10.0 30 1-30 23-52 (146)
69 PF00261 Tropomyosin: Tropomyo 79.0 33 0.00072 27.9 13.5 21 71-91 63-83 (237)
70 PHA02975 hypothetical protein; 78.7 4.6 0.0001 26.0 3.8 23 198-220 46-68 (69)
71 PRK11637 AmiB activator; Provi 78.7 47 0.001 29.5 19.7 82 8-90 45-128 (428)
72 KOG0860 Synaptobrevin/VAMP-lik 77.6 24 0.00051 25.4 11.4 39 141-179 28-66 (116)
73 PF00523 Fusion_gly: Fusion gl 77.4 1 2.3E-05 40.6 0.9 22 5-26 50-71 (490)
74 PF07527 Hairy_orange: Hairy O 76.6 12 0.00027 21.6 5.5 41 6-46 1-41 (43)
75 PF05961 Chordopox_A13L: Chord 75.9 3.4 7.4E-05 26.6 2.7 21 198-218 5-25 (68)
76 KOG0250 DNA repair protein RAD 75.6 90 0.002 31.1 19.9 85 7-92 278-364 (1074)
77 PF01102 Glycophorin_A: Glycop 75.5 4.1 8.9E-05 29.7 3.4 19 198-216 68-86 (122)
78 PF03962 Mnd1: Mnd1 family; I 75.2 26 0.00055 27.6 8.1 61 32-92 65-130 (188)
79 PHA02692 hypothetical protein; 74.8 5.6 0.00012 25.8 3.5 22 198-219 48-69 (70)
80 TIGR00606 rad50 rad50. This fa 74.0 1.1E+02 0.0024 31.5 18.7 29 66-94 882-910 (1311)
81 smart00511 ORANGE Orange domai 73.7 10 0.00022 22.1 4.3 41 7-47 2-42 (45)
82 PHA03049 IMV membrane protein; 73.6 4.3 9.3E-05 26.0 2.7 13 204-216 8-20 (68)
83 PHA03054 IMV membrane protein; 73.5 6.8 0.00015 25.4 3.6 22 198-219 50-71 (72)
84 PF07106 TBPIP: Tat binding pr 72.2 41 0.00089 25.7 10.5 57 36-94 79-138 (169)
85 PF04880 NUDE_C: NUDE protein, 72.1 7.8 0.00017 29.8 4.4 46 38-88 2-47 (166)
86 PF05961 Chordopox_A13L: Chord 71.8 6.3 0.00014 25.3 3.2 18 201-218 5-22 (68)
87 PF10717 ODV-E18: Occlusion-de 71.7 5.8 0.00013 26.7 3.1 18 200-217 27-44 (85)
88 PF10458 Val_tRNA-synt_C: Valy 71.6 23 0.00051 22.5 8.2 53 39-91 7-65 (66)
89 PF07106 TBPIP: Tat binding pr 71.5 35 0.00076 26.1 8.0 55 37-92 73-129 (169)
90 COG3883 Uncharacterized protei 71.4 59 0.0013 27.1 15.4 70 34-107 36-105 (265)
91 PF08693 SKG6: Transmembrane a 71.4 1.5 3.3E-05 25.2 0.3 16 202-217 22-37 (40)
92 PF01627 Hpt: Hpt domain; Int 70.4 27 0.00059 22.8 8.9 62 3-64 1-67 (90)
93 PRK10780 periplasmic chaperone 70.3 46 0.00099 25.4 9.9 22 5-26 52-73 (165)
94 PF12352 V-SNARE_C: Snare regi 70.2 24 0.00053 22.2 7.7 55 127-181 7-61 (66)
95 PF06160 EzrA: Septation ring 69.4 96 0.0021 28.7 17.4 55 36-91 379-433 (560)
96 PF00261 Tropomyosin: Tropomyo 68.6 62 0.0013 26.2 15.8 52 128-179 183-234 (237)
97 PF14362 DUF4407: Domain of un 67.4 74 0.0016 26.7 18.7 23 198-220 263-285 (301)
98 PF01519 DUF16: Protein of unk 67.2 25 0.00055 24.7 5.7 38 156-193 60-97 (102)
99 PRK09759 small toxic polypepti 66.9 3.3 7.1E-05 25.1 1.1 22 196-217 3-24 (50)
100 PF05008 V-SNARE: Vesicle tran 66.7 24 0.00052 23.1 5.5 49 43-91 25-73 (79)
101 PF09177 Syntaxin-6_N: Syntaxi 66.5 40 0.00086 23.2 10.9 88 4-91 2-96 (97)
102 PF02439 Adeno_E3_CR2: Adenovi 66.2 12 0.00025 21.3 3.2 16 201-216 10-25 (38)
103 KOG3202 SNARE protein TLG1/Syn 66.2 72 0.0016 26.1 9.6 25 160-184 184-208 (235)
104 PF12495 Vip3A_N: Vegetative i 65.4 36 0.00079 24.8 6.4 85 123-207 40-131 (177)
105 PF13800 Sigma_reg_N: Sigma fa 65.4 17 0.00036 25.0 4.7 17 184-200 3-19 (96)
106 PRK10404 hypothetical protein; 65.3 45 0.00097 23.4 7.5 54 34-87 7-60 (101)
107 KOG4674 Uncharacterized conser 65.0 2E+02 0.0043 30.7 20.4 68 126-193 396-463 (1822)
108 PF15106 TMEM156: TMEM156 prot 64.8 9 0.0002 30.5 3.4 25 196-220 174-198 (226)
109 PF00558 Vpu: Vpu protein; In 64.7 9.9 0.00022 25.6 3.2 19 199-217 6-24 (81)
110 PRK04778 septation ring format 63.9 1.2E+02 0.0027 28.0 15.8 63 134-196 204-268 (569)
111 PF06716 DUF1201: Protein of u 63.4 24 0.00052 20.9 4.2 13 199-211 10-22 (54)
112 PHA02902 putative IMV membrane 63.1 15 0.00033 23.3 3.6 24 196-219 4-27 (70)
113 PF14257 DUF4349: Domain of un 62.8 85 0.0018 25.7 9.7 83 11-94 106-191 (262)
114 KOG0994 Extracellular matrix g 62.6 1.9E+02 0.004 29.6 16.3 21 36-56 1461-1481(1758)
115 COG4068 Uncharacterized protei 62.5 36 0.00078 21.3 5.1 24 183-206 30-53 (64)
116 PF10168 Nup88: Nuclear pore c 62.4 1.5E+02 0.0033 28.5 16.7 28 68-95 635-662 (717)
117 PF13800 Sigma_reg_N: Sigma fa 62.4 18 0.00039 24.8 4.4 30 188-217 3-32 (96)
118 PRK10132 hypothetical protein; 62.3 54 0.0012 23.3 11.3 54 164-217 53-106 (108)
119 TIGR01069 mutS2 MutS2 family p 61.9 1.2E+02 0.0026 29.4 11.0 21 5-25 506-526 (771)
120 PF02009 Rifin_STEVOR: Rifin/s 61.8 8.4 0.00018 32.6 3.0 22 3-24 50-71 (299)
121 KOG0250 DNA repair protein RAD 61.5 1.8E+02 0.0039 29.1 17.4 26 37-62 317-342 (1074)
122 PF15018 InaF-motif: TRP-inter 61.5 15 0.00033 20.9 3.1 20 201-220 12-31 (38)
123 PF11460 DUF3007: Protein of u 61.4 27 0.00058 24.7 4.9 16 26-41 87-102 (104)
124 PF15168 TRIQK: Triple QxxK/R 60.9 20 0.00044 23.6 4.0 23 198-220 52-74 (79)
125 PF07851 TMPIT: TMPIT-like pro 60.6 1.1E+02 0.0024 26.4 11.0 85 3-92 4-88 (330)
126 PF04999 FtsL: Cell division p 60.4 28 0.00061 23.9 5.1 24 190-213 6-30 (97)
127 cd02682 MIT_AAA_Arch MIT: doma 60.1 47 0.001 22.0 6.3 48 41-88 22-70 (75)
128 KOG0995 Centromere-associated 59.9 1.5E+02 0.0032 27.5 17.6 24 69-92 291-314 (581)
129 PF06696 Strep_SA_rep: Strepto 59.8 23 0.00049 18.2 4.2 22 69-90 2-23 (25)
130 PHA03049 IMV membrane protein; 59.7 15 0.00031 23.6 3.1 22 198-219 5-26 (68)
131 PF10661 EssA: WXG100 protein 59.5 15 0.00032 27.7 3.7 17 204-220 128-144 (145)
132 PF05399 EVI2A: Ectropic viral 59.4 13 0.00028 29.6 3.5 20 198-217 130-149 (227)
133 PRK09738 small toxic polypepti 59.4 5.2 0.00011 24.5 1.0 22 196-217 5-26 (52)
134 PF08802 CytB6-F_Fe-S: Cytochr 58.4 33 0.00072 19.6 4.9 25 188-212 5-29 (39)
135 PRK10132 hypothetical protein; 58.0 65 0.0014 22.9 7.0 13 70-82 50-62 (108)
136 PF04639 Baculo_E56: Baculovir 56.7 5.1 0.00011 33.4 0.9 21 198-218 280-300 (305)
137 PTZ00046 rifin; Provisional 56.6 12 0.00026 32.4 3.1 23 198-220 316-338 (358)
138 KOG1693 emp24/gp25L/p24 family 56.5 52 0.0011 26.1 6.3 23 198-220 178-200 (209)
139 PF10183 ESSS: ESSS subunit of 56.3 15 0.00032 26.0 3.1 21 198-218 61-81 (105)
140 PF08113 CoxIIa: Cytochrome c 56.3 30 0.00065 19.0 3.5 12 206-217 17-28 (34)
141 PF06013 WXG100: Proteins of 1 56.0 52 0.0011 21.1 7.7 63 30-92 5-71 (86)
142 COG1256 FlgK Flagellar hook-as 55.7 1.4E+02 0.0031 27.7 10.0 25 32-56 131-155 (552)
143 PRK11820 hypothetical protein; 55.7 1.3E+02 0.0027 25.5 13.3 64 14-77 130-193 (288)
144 PF10661 EssA: WXG100 protein 55.5 15 0.00032 27.7 3.1 22 198-219 119-140 (145)
145 TIGR01478 STEVOR variant surfa 55.4 16 0.00034 30.6 3.5 17 202-218 268-284 (295)
146 PF11337 DUF3139: Protein of u 55.4 19 0.00041 24.3 3.4 11 197-207 5-15 (85)
147 PF07889 DUF1664: Protein of u 55.4 81 0.0017 23.1 10.6 82 3-92 32-116 (126)
148 TIGR01477 RIFIN variant surfac 55.2 13 0.00028 32.1 3.1 23 198-220 311-333 (353)
149 TIGR00255 conserved hypothetic 55.1 1.3E+02 0.0028 25.4 12.2 65 13-77 131-195 (291)
150 PF10267 Tmemb_cc2: Predicted 55.1 1.5E+02 0.0033 26.2 16.7 23 70-92 217-239 (395)
151 KOG4603 TBP-1 interacting prot 55.0 98 0.0021 24.0 12.4 59 32-90 119-177 (201)
152 PRK10929 putative mechanosensi 54.7 2.5E+02 0.0054 28.6 17.1 30 157-186 273-302 (1109)
153 PF02609 Exonuc_VII_S: Exonucl 54.6 46 0.001 20.1 7.0 46 14-59 3-50 (53)
154 PTZ00370 STEVOR; Provisional 53.8 17 0.00037 30.4 3.5 16 203-218 265-280 (296)
155 PF09125 COX2-transmemb: Cytoc 53.6 35 0.00076 19.1 3.6 14 197-210 15-28 (38)
156 COG4396 Mu-like prophage host- 53.6 92 0.002 23.2 8.0 62 43-109 25-86 (170)
157 TIGR01010 BexC_CtrB_KpsE polys 53.5 1.5E+02 0.0032 25.6 14.0 24 69-92 174-197 (362)
158 COG5415 Predicted integral mem 53.5 95 0.0021 24.9 7.3 31 165-195 17-47 (251)
159 KOG0933 Structural maintenance 53.4 2.5E+02 0.0054 28.2 20.0 53 138-190 832-884 (1174)
160 COG4499 Predicted membrane pro 53.2 17 0.00037 31.8 3.5 58 147-220 187-244 (434)
161 PF06072 Herpes_US9: Alphaherp 53.0 55 0.0012 20.6 4.8 14 180-193 9-22 (60)
162 PF12777 MT: Microtubule-bindi 51.8 1.3E+02 0.0027 26.0 8.7 91 130-220 230-327 (344)
163 PRK00977 exodeoxyribonuclease 51.3 71 0.0015 21.3 6.9 51 41-91 12-64 (80)
164 PF07798 DUF1640: Protein of u 51.0 1.1E+02 0.0024 23.5 14.4 130 39-217 47-176 (177)
165 PF02009 Rifin_STEVOR: Rifin/s 50.9 20 0.00043 30.4 3.5 12 199-210 258-269 (299)
166 KOG4684 Uncharacterized conser 50.6 29 0.00063 27.8 4.1 31 185-215 197-227 (275)
167 PF04799 Fzo_mitofusin: fzo-li 50.3 1.1E+02 0.0023 23.8 7.1 50 39-88 116-167 (171)
168 PF15183 MRAP: Melanocortin-2 50.2 25 0.00054 23.7 3.1 20 198-217 40-59 (90)
169 PF14283 DUF4366: Domain of un 50.2 3.3 7.2E-05 33.4 -1.2 18 204-221 167-184 (218)
170 PF07361 Cytochrom_B562: Cytoc 50.0 87 0.0019 21.9 7.0 46 38-83 55-100 (103)
171 TIGR03142 cytochro_ccmI cytoch 49.6 94 0.002 22.2 6.5 20 200-219 95-114 (117)
172 PRK10884 SH3 domain-containing 49.3 1.3E+02 0.0029 23.9 12.7 50 168-217 137-189 (206)
173 PF04065 Not3: Not1 N-terminal 49.0 1.2E+02 0.0026 24.8 7.6 63 32-94 118-192 (233)
174 PRK11519 tyrosine kinase; Prov 49.0 2.5E+02 0.0054 26.9 13.7 52 37-88 275-327 (719)
175 PF08181 DegQ: DegQ (SacQ) fam 48.7 49 0.0011 19.0 3.7 25 43-67 4-28 (46)
176 PF02419 PsbL: PsbL protein; 48.3 40 0.00087 18.9 3.3 19 199-217 17-35 (37)
177 PRK14067 exodeoxyribonuclease 48.2 82 0.0018 21.1 6.9 53 40-92 8-62 (80)
178 TIGR01280 xseB exodeoxyribonuc 48.0 73 0.0016 20.5 6.9 25 32-56 25-49 (67)
179 PF02532 PsbI: Photosystem II 47.6 45 0.00099 18.6 3.4 18 195-212 3-20 (36)
180 PF00804 Syntaxin: Syntaxin; 47.5 84 0.0018 21.1 9.3 55 5-59 5-72 (103)
181 PF06459 RR_TM4-6: Ryanodine R 47.4 53 0.0011 27.5 5.4 34 184-220 161-194 (274)
182 PF03904 DUF334: Domain of unk 46.8 1.6E+02 0.0034 24.0 10.0 28 67-94 115-142 (230)
183 PF00672 HAMP: HAMP domain; I 46.7 29 0.00063 21.6 3.2 9 207-215 11-19 (70)
184 PF05983 Med7: MED7 protein; 46.5 1.3E+02 0.0028 23.0 9.9 81 6-92 71-158 (162)
185 PF11026 DUF2721: Protein of u 46.4 1.1E+02 0.0025 22.3 6.6 28 183-210 49-77 (130)
186 PF08581 Tup_N: Tup N-terminal 46.2 88 0.0019 20.9 9.5 20 2-21 3-22 (79)
187 PF06657 Cep57_MT_bd: Centroso 45.8 89 0.0019 20.8 7.1 15 4-18 18-32 (79)
188 PF13253 DUF4044: Protein of u 45.6 50 0.0011 18.4 3.4 24 193-216 7-30 (35)
189 CHL00038 psbL photosystem II p 45.5 41 0.00089 18.9 3.0 19 199-217 18-36 (38)
190 PF01102 Glycophorin_A: Glycop 44.9 32 0.00069 25.1 3.3 19 198-217 72-90 (122)
191 KOG0612 Rho-associated, coiled 44.6 3.7E+02 0.008 27.6 18.4 49 126-174 582-630 (1317)
192 PRK11281 hypothetical protein; 44.0 3.7E+02 0.008 27.4 19.9 32 156-187 292-323 (1113)
193 PRK11281 hypothetical protein; 43.9 3.7E+02 0.008 27.4 16.1 24 69-92 84-107 (1113)
194 PF09788 Tmemb_55A: Transmembr 43.4 22 0.00047 29.3 2.5 29 187-215 187-215 (256)
195 PF08855 DUF1825: Domain of un 43.4 1.2E+02 0.0026 21.6 9.4 55 4-58 9-63 (108)
196 PF04834 Adeno_E3_14_5: Early 43.3 27 0.00059 24.2 2.6 15 205-219 33-47 (97)
197 PF06005 DUF904: Protein of un 43.3 93 0.002 20.3 10.2 17 3-19 4-20 (72)
198 COG0342 SecD Preprotein transl 43.2 27 0.00058 32.0 3.3 26 195-220 342-367 (506)
199 PF12998 ING: Inhibitor of gro 43.1 1.1E+02 0.0023 21.0 6.6 11 45-55 35-45 (105)
200 PRK13729 conjugal transfer pil 42.9 1.3E+02 0.0028 27.3 7.4 56 36-92 69-124 (475)
201 PF01848 HOK_GEF: Hok/gef fami 42.6 15 0.00034 21.5 1.2 19 199-217 3-21 (43)
202 PTZ00382 Variant-specific surf 42.5 6.3 0.00014 27.4 -0.6 9 209-217 81-89 (96)
203 PF02936 COX4: Cytochrome c ox 42.4 40 0.00087 25.2 3.7 24 196-219 74-97 (142)
204 cd00922 Cyt_c_Oxidase_IV Cytoc 42.3 40 0.00087 25.0 3.6 23 197-219 75-97 (136)
205 PRK14063 exodeoxyribonuclease 41.9 1E+02 0.0022 20.4 6.9 18 74-91 42-59 (76)
206 PF07835 COX4_pro_2: Bacterial 41.8 30 0.00065 20.3 2.3 15 199-213 25-39 (44)
207 PF00558 Vpu: Vpu protein; In 41.7 30 0.00066 23.3 2.6 13 207-219 21-33 (81)
208 COG5052 YOP1 Protein involved 41.6 88 0.0019 24.4 5.4 42 163-205 3-44 (186)
209 PRK10404 hypothetical protein; 41.3 1.2E+02 0.0027 21.2 10.6 33 184-216 67-99 (101)
210 PF09006 Surfac_D-trimer: Lung 41.2 77 0.0017 18.8 4.7 33 69-109 3-35 (46)
211 PRK00409 recombination and DNA 41.1 3.5E+02 0.0076 26.3 10.9 9 11-19 517-525 (782)
212 PRK10780 periplasmic chaperone 40.9 1.6E+02 0.0034 22.3 9.3 37 46-82 64-100 (165)
213 PF00038 Filament: Intermediat 40.8 2.2E+02 0.0047 23.8 20.0 87 3-89 47-141 (312)
214 PF07889 DUF1664: Protein of u 40.6 1.5E+02 0.0031 21.8 7.2 34 137-170 70-103 (126)
215 PF03938 OmpH: Outer membrane 40.3 1.5E+02 0.0033 21.9 8.1 28 61-88 72-99 (158)
216 PHA03240 envelope glycoprotein 40.3 30 0.00066 27.8 2.8 18 197-214 214-231 (258)
217 KOG0161 Myosin class II heavy 40.1 5.3E+02 0.011 28.1 18.7 64 123-186 1852-1915(1930)
218 PF12958 DUF3847: Protein of u 40.1 1.2E+02 0.0026 20.7 5.8 46 161-206 6-54 (86)
219 KOG3443 Uncharacterized conser 40.1 1.7E+02 0.0038 22.5 8.1 49 153-201 32-80 (184)
220 PRK14064 exodeoxyribonuclease 39.1 1.1E+02 0.0024 20.1 6.9 18 74-91 43-60 (75)
221 PRK15058 cytochrome b562; Prov 39.1 1.6E+02 0.0034 21.7 6.8 13 7-19 82-94 (128)
222 KOG3564 GTPase-activating prot 38.8 2.6E+02 0.0057 25.5 8.5 13 77-89 89-101 (604)
223 PRK00753 psbL photosystem II r 38.7 52 0.0011 18.5 2.8 18 199-216 19-36 (39)
224 COG4640 Predicted membrane pro 38.6 38 0.00083 29.8 3.4 17 196-212 50-66 (465)
225 PRK14068 exodeoxyribonuclease 38.6 1.2E+02 0.0025 20.1 6.9 17 75-91 44-60 (76)
226 KOG0946 ER-Golgi vesicle-tethe 38.4 3.9E+02 0.0085 26.2 15.5 85 8-92 616-712 (970)
227 KOG1656 Protein involved in gl 38.3 1.1E+02 0.0023 24.5 5.5 22 168-189 126-147 (221)
228 PF00505 HMG_box: HMG (high mo 38.3 98 0.0021 19.2 5.9 40 48-87 28-67 (69)
229 PF01034 Syndecan: Syndecan do 38.3 11 0.00024 24.1 0.1 6 214-219 31-36 (64)
230 PRK14066 exodeoxyribonuclease 37.6 1.2E+02 0.0026 20.0 6.3 18 74-91 41-58 (75)
231 PF08196 UL2: UL2 protein; In 37.5 81 0.0018 19.2 3.7 20 202-221 37-56 (60)
232 PF11855 DUF3375: Protein of u 37.5 3.2E+02 0.0069 24.8 10.4 80 9-92 121-205 (478)
233 PF05393 Hum_adeno_E3A: Human 37.2 59 0.0013 22.2 3.4 18 201-218 40-57 (94)
234 KOG2129 Uncharacterized conser 36.4 3.2E+02 0.0069 24.5 10.4 24 3-26 190-213 (552)
235 PF04156 IncA: IncA protein; 36.4 2E+02 0.0043 22.1 11.0 26 67-92 125-150 (191)
236 PF04799 Fzo_mitofusin: fzo-li 35.7 2.1E+02 0.0045 22.2 8.0 49 44-92 114-164 (171)
237 PF09011 HMG_box_2: HMG-box do 35.7 1.2E+02 0.0026 19.4 5.3 36 48-83 32-67 (73)
238 COG1561 Uncharacterized stress 35.3 2.8E+02 0.006 23.5 13.9 40 128-168 250-289 (290)
239 PF07851 TMPIT: TMPIT-like pro 35.2 1.3E+02 0.0028 25.9 6.0 30 30-59 62-91 (330)
240 TIGR02169 SMC_prok_A chromosom 35.1 4.7E+02 0.01 26.1 19.9 16 176-191 475-490 (1164)
241 PF15202 Adipogenin: Adipogeni 35.1 72 0.0016 20.6 3.4 23 198-220 17-39 (81)
242 PRK09841 cryptic autophosphory 35.0 4.2E+02 0.009 25.5 14.3 169 35-221 273-450 (726)
243 PF03233 Cauli_AT: Aphid trans 34.7 2.1E+02 0.0046 22.0 7.1 46 45-90 113-160 (163)
244 PF06682 DUF1183: Protein of u 34.5 38 0.00082 29.0 2.7 11 207-217 164-174 (318)
245 PRK14750 kdpF potassium-transp 34.5 69 0.0015 16.9 2.7 10 200-209 6-15 (29)
246 PF08581 Tup_N: Tup N-terminal 34.5 1.4E+02 0.0031 19.9 6.3 6 16-21 6-11 (79)
247 PF02388 FemAB: FemAB family; 33.8 2.7E+02 0.0057 24.6 8.1 52 36-92 242-293 (406)
248 cd07669 BAR_SNX33 The Bin/Amph 33.6 1.3E+02 0.0029 24.0 5.5 57 38-94 7-63 (207)
249 COG3149 PulM Type II secretory 33.6 61 0.0013 25.1 3.4 23 194-216 34-56 (181)
250 PF15361 RIC3: Resistance to i 33.4 38 0.00083 25.6 2.4 19 202-220 84-102 (152)
251 PF13864 Enkurin: Calmodulin-b 33.1 1.6E+02 0.0035 20.2 6.8 57 29-91 37-93 (98)
252 KOG2150 CCR4-NOT transcription 33.0 4.1E+02 0.0089 24.8 14.0 32 30-61 36-67 (575)
253 PF09177 Syntaxin-6_N: Syntaxi 33.0 1.6E+02 0.0035 20.1 8.2 54 39-92 8-66 (97)
254 PF07240 Turandot: Stress-indu 33.0 1.3E+02 0.0028 20.5 4.6 37 43-79 7-45 (85)
255 cd07668 BAR_SNX9 The Bin/Amphi 32.9 1.5E+02 0.0032 23.8 5.6 56 38-93 7-62 (210)
256 PF00435 Spectrin: Spectrin re 32.8 1.4E+02 0.0031 19.5 12.1 85 5-89 3-97 (105)
257 PF09057 Smac_DIABLO: Second M 32.8 2.7E+02 0.0058 22.6 11.8 54 43-96 97-150 (234)
258 PF14235 DUF4337: Domain of un 32.8 2.2E+02 0.0048 21.6 12.7 26 67-92 68-93 (157)
259 PF09403 FadA: Adhesion protei 32.7 2E+02 0.0043 21.1 10.5 56 37-92 53-113 (126)
260 PF05791 Bacillus_HBL: Bacillu 32.6 2.4E+02 0.0052 21.9 9.7 17 7-23 84-100 (184)
261 PF06005 DUF904: Protein of un 32.2 1.5E+02 0.0032 19.4 7.7 25 37-61 5-29 (72)
262 PF07010 Endomucin: Endomucin; 32.1 45 0.00097 27.0 2.6 13 198-210 189-201 (259)
263 PF09577 Spore_YpjB: Sporulati 32.1 2.8E+02 0.0061 22.6 13.1 23 198-220 201-223 (232)
264 PRK10697 DNA-binding transcrip 32.1 1.1E+02 0.0023 22.2 4.4 33 32-64 77-109 (118)
265 PF14282 FlxA: FlxA-like prote 31.9 1.8E+02 0.004 20.4 7.1 55 35-93 18-72 (106)
266 MTH00158 ATP8 ATP synthase F0 31.2 92 0.002 16.8 3.6 21 198-218 10-30 (32)
267 TIGR02284 conserved hypothetic 31.1 2.2E+02 0.0047 21.0 12.2 128 40-174 4-137 (139)
268 PRK14082 hypothetical protein; 30.9 1.5E+02 0.0032 19.0 4.4 39 7-45 6-45 (65)
269 PF04011 LemA: LemA family; I 30.9 2.5E+02 0.0054 21.6 8.2 47 46-92 95-145 (186)
270 PRK14069 exodeoxyribonuclease 30.9 1.9E+02 0.004 20.1 6.9 54 40-93 9-64 (95)
271 KOG0964 Structural maintenance 30.5 5.8E+02 0.013 25.7 20.4 25 151-175 819-843 (1200)
272 KOG3287 Membrane trafficking p 30.5 2.5E+02 0.0054 22.7 6.5 34 166-199 156-189 (236)
273 PF00038 Filament: Intermediat 30.5 3.2E+02 0.007 22.8 11.9 23 38-60 211-233 (312)
274 PRK05729 valS valyl-tRNA synth 30.4 2.9E+02 0.0063 27.2 8.4 57 35-91 810-872 (874)
275 PF04065 Not3: Not1 N-terminal 30.4 3E+02 0.0066 22.5 14.0 59 29-91 35-93 (233)
276 KOG3838 Mannose lectin ERGIC-5 30.4 1.8E+02 0.0038 25.9 6.1 37 67-105 274-310 (497)
277 PLN03094 Substrate binding sub 30.3 61 0.0013 28.4 3.4 31 188-218 77-107 (370)
278 PF09602 PhaP_Bmeg: Polyhydrox 30.3 2.6E+02 0.0055 21.6 10.5 11 2-12 11-21 (165)
279 PF11174 DUF2970: Protein of u 30.1 1.1E+02 0.0023 19.0 3.5 22 198-219 33-54 (56)
280 KOG2196 Nuclear porin [Nuclear 30.0 3.1E+02 0.0068 22.5 10.4 26 36-61 134-159 (254)
281 cd00928 Cyt_c_Oxidase_VIIa Cyt 29.9 1.2E+02 0.0026 18.8 3.7 26 194-219 26-51 (55)
282 PF10146 zf-C4H2: Zinc finger- 29.8 3.1E+02 0.0066 22.3 9.5 47 38-92 55-101 (230)
283 PF10140 YukC: WXG100 protein 29.8 18 0.00038 31.6 0.0 31 191-221 189-219 (359)
284 PF06667 PspB: Phage shock pro 29.6 96 0.0021 20.5 3.5 8 210-217 19-26 (75)
285 PF12729 4HB_MCP_1: Four helix 29.5 2.2E+02 0.0048 20.6 12.8 61 28-91 71-131 (181)
286 KOG2736 Presenilin [Signal tra 29.5 71 0.0015 27.9 3.6 27 194-220 70-96 (406)
287 COG4839 FtsL Protein required 29.4 1.9E+02 0.0041 21.0 5.2 24 195-218 36-59 (120)
288 smart00503 SynN Syntaxin N-ter 29.4 1.9E+02 0.0042 19.9 11.1 56 5-60 6-74 (117)
289 PHA02655 hypothetical protein; 29.2 34 0.00074 22.2 1.3 20 202-221 72-91 (94)
290 COG3116 FtsL Cell division pro 29.2 67 0.0015 22.6 2.8 21 195-215 20-40 (105)
291 KOG3046 Transcription factor, 29.1 2.5E+02 0.0054 21.0 6.8 56 31-86 7-62 (147)
292 KOG1326 Membrane-associated pr 29.0 90 0.002 30.9 4.5 34 184-217 1060-1093(1105)
293 PF06103 DUF948: Bacterial pro 29.0 1.8E+02 0.0039 19.4 8.5 7 165-171 60-66 (90)
294 PF10151 DUF2359: Uncharacteri 29.0 1.7E+02 0.0037 26.5 6.1 63 153-218 222-284 (469)
295 KOG4782 Predicted membrane pro 28.9 60 0.0013 22.4 2.4 22 198-219 60-81 (108)
296 TIGR02106 cyd_oper_ybgT cyd op 28.8 1E+02 0.0022 16.5 3.2 17 198-214 6-22 (30)
297 PTZ00464 SNF-7-like protein; P 28.8 3.1E+02 0.0066 22.0 15.1 47 143-190 102-148 (211)
298 cd07670 BAR_SNX18 The Bin/Amph 28.7 2E+02 0.0044 23.0 5.7 56 38-93 7-62 (207)
299 PF14899 DUF4492: Domain of un 28.7 1E+02 0.0022 19.7 3.3 21 199-219 20-40 (64)
300 TIGR03017 EpsF chain length de 28.6 4.1E+02 0.0089 23.4 11.2 19 37-55 255-273 (444)
301 PF10267 Tmemb_cc2: Predicted 28.6 4.2E+02 0.0091 23.5 18.7 14 206-219 379-392 (395)
302 PF06084 Cytomega_TRL10: Cytom 28.6 24 0.00053 25.2 0.5 7 211-217 75-81 (150)
303 PF10234 Cluap1: Clusterin-ass 28.5 3.5E+02 0.0076 22.6 9.4 54 38-92 164-217 (267)
304 TIGR02978 phageshock_pspC phag 28.3 1.3E+02 0.0029 21.8 4.4 33 32-64 80-112 (121)
305 PF13198 DUF4014: Protein of u 28.2 1.4E+02 0.003 19.5 3.9 18 189-206 9-26 (72)
306 PF06363 Picorna_P3A: Picornav 28.0 1.6E+02 0.0035 20.3 4.4 38 183-220 55-92 (100)
307 PF15125 TMEM238: TMEM238 prot 28.0 1.2E+02 0.0025 19.5 3.5 26 193-218 30-55 (65)
308 PF03302 VSP: Giardia variant- 28.0 31 0.00067 30.5 1.2 21 201-221 374-394 (397)
309 PF02238 COX7a: Cytochrome c o 27.9 1.4E+02 0.0031 18.5 3.8 25 194-218 24-48 (56)
310 PF14643 DUF4455: Domain of un 27.8 4.6E+02 0.01 23.7 9.7 77 6-88 380-456 (473)
311 PF05546 She9_MDM33: She9 / Md 27.7 3.2E+02 0.007 21.9 19.3 10 98-107 73-82 (207)
312 PF14914 LRRC37AB_C: LRRC37A/B 27.7 72 0.0016 24.0 2.9 11 193-203 116-126 (154)
313 PTZ00087 thrombosponding-relat 27.6 51 0.0011 27.5 2.3 20 199-218 302-321 (340)
314 PRK10772 cell division protein 27.4 1.7E+02 0.0036 20.9 4.6 26 189-214 15-41 (108)
315 KOG0809 SNARE protein TLG2/Syn 27.1 62 0.0013 27.3 2.7 21 36-56 61-81 (305)
316 PLN02943 aminoacyl-tRNA ligase 27.0 3.9E+02 0.0084 26.7 8.6 57 36-92 889-951 (958)
317 PF09451 ATG27: Autophagy-rela 26.9 67 0.0015 26.6 3.0 18 198-215 202-219 (268)
318 COG1033 Predicted exporters of 26.8 1.2E+02 0.0025 29.3 4.8 69 144-220 525-593 (727)
319 PRK09731 putative general secr 26.8 91 0.002 24.3 3.5 28 189-216 29-57 (178)
320 PF11947 DUF3464: Protein of u 26.5 1.7E+02 0.0038 22.2 4.8 31 183-217 55-85 (153)
321 PF12008 EcoR124_C: Type I res 26.4 2.1E+02 0.0045 23.3 5.9 88 3-92 5-96 (270)
322 PF06679 DUF1180: Protein of u 26.3 91 0.002 24.0 3.3 16 201-216 99-114 (163)
323 PF10808 DUF2542: Protein of u 26.0 49 0.0011 21.8 1.6 22 198-221 58-79 (79)
324 KOG1094 Discoidin domain recep 25.9 82 0.0018 29.7 3.5 20 198-217 395-414 (807)
325 PRK11820 hypothetical protein; 25.7 4.1E+02 0.0088 22.4 9.0 38 130-168 250-287 (288)
326 PHA02662 ORF131 putative membr 25.7 87 0.0019 25.3 3.2 19 197-215 187-205 (226)
327 KOG0933 Structural maintenance 25.4 7.2E+02 0.016 25.2 17.1 42 67-108 908-949 (1174)
328 cd04779 HTH_MerR-like_sg4 Heli 25.2 2.8E+02 0.0061 20.4 6.2 8 45-52 59-66 (134)
329 PHA02562 46 endonuclease subun 25.2 5.2E+02 0.011 23.5 21.8 19 174-192 383-401 (562)
330 PF01297 TroA: Periplasmic sol 25.2 3.1E+02 0.0066 22.1 6.6 46 49-94 102-147 (256)
331 PF04728 LPP: Lipoprotein leuc 25.2 1.8E+02 0.0039 18.1 6.4 22 39-60 6-27 (56)
332 KOG4759 Ribosome recycling fac 24.9 4.1E+02 0.0088 22.1 7.1 40 4-43 200-240 (263)
333 PRK06007 fliF flagellar MS-rin 24.9 93 0.002 28.8 3.8 24 198-221 440-463 (542)
334 PRK14067 exodeoxyribonuclease 24.8 2.2E+02 0.0048 19.0 5.4 49 12-60 9-59 (80)
335 MTH00260 ATP8 ATP synthase F0 24.8 1.6E+02 0.0035 18.0 3.6 20 198-217 10-29 (53)
336 PF09716 ETRAMP: Malarial earl 24.6 2.2E+02 0.0048 19.1 4.7 21 183-203 40-60 (84)
337 PF01544 CorA: CorA-like Mg2+ 24.6 3.8E+02 0.0082 21.7 12.6 51 38-91 120-170 (292)
338 PRK10807 paraquat-inducible pr 24.6 5.7E+02 0.012 23.7 12.8 45 13-60 416-460 (547)
339 PF07544 Med9: RNA polymerase 24.6 2.2E+02 0.0048 19.0 7.5 59 30-93 22-80 (83)
340 PF05115 PetL: Cytochrome B6-F 24.5 1.3E+02 0.0028 16.3 3.7 22 198-219 4-25 (31)
341 PHA02955 hypothetical protein; 24.4 95 0.0021 24.9 3.2 19 53-71 68-86 (213)
342 PF03961 DUF342: Protein of un 24.4 5.1E+02 0.011 23.1 8.7 22 70-91 380-401 (451)
343 KOG3838 Mannose lectin ERGIC-5 24.4 5.1E+02 0.011 23.1 10.8 29 5-33 274-302 (497)
344 PHA02947 S-S bond formation pa 24.4 93 0.002 25.0 3.1 13 58-70 73-85 (215)
345 PRK02224 chromosome segregatio 24.3 6.7E+02 0.015 24.4 20.4 179 5-191 539-719 (880)
346 PRK11901 hypothetical protein; 24.2 1E+02 0.0022 26.5 3.5 18 197-214 37-54 (327)
347 PF13396 PLDc_N: Phospholipase 24.2 52 0.0011 19.0 1.4 23 197-219 21-43 (46)
348 PTZ00419 valyl-tRNA synthetase 24.2 4.7E+02 0.01 26.2 8.7 57 36-92 929-991 (995)
349 PF10779 XhlA: Haemolysin XhlA 24.1 2.1E+02 0.0044 18.4 6.1 24 69-92 31-54 (71)
350 TIGR03017 EpsF chain length de 24.1 5E+02 0.011 22.9 20.9 29 165-193 337-365 (444)
351 cd01145 TroA_c Periplasmic bin 23.9 3.3E+02 0.0071 21.3 6.3 48 46-93 115-162 (203)
352 TIGR03545 conserved hypothetic 23.9 6E+02 0.013 23.7 8.9 22 6-27 167-188 (555)
353 COG3462 Predicted membrane pro 23.8 1.3E+02 0.0028 21.4 3.4 7 200-206 56-62 (117)
354 PF05814 DUF843: Baculovirus p 23.8 1.1E+02 0.0024 20.6 2.9 21 197-217 25-45 (83)
355 PF15431 TMEM190: Transmembran 23.7 2.4E+02 0.0053 20.1 4.8 19 200-218 67-85 (134)
356 PF12409 P5-ATPase: P5-type AT 23.6 1.1E+02 0.0024 21.9 3.3 20 197-216 16-35 (119)
357 KOG4075 Cytochrome c oxidase, 23.5 89 0.0019 24.0 2.8 28 192-219 95-122 (167)
358 PRK09706 transcriptional repre 23.5 2.7E+02 0.0058 20.1 5.4 34 58-91 95-128 (135)
359 PF09815 XK-related: XK-relate 23.5 1E+02 0.0022 26.4 3.6 23 199-221 308-330 (332)
360 PF01105 EMP24_GP25L: emp24/gp 23.2 20 0.00044 27.0 -0.7 31 162-192 111-141 (183)
361 TIGR01477 RIFIN variant surfac 23.2 1.1E+02 0.0023 26.7 3.5 22 197-218 315-336 (353)
362 cd02677 MIT_SNX15 MIT: domain 23.1 2.3E+02 0.0049 18.6 6.6 44 45-88 26-70 (75)
363 PF07664 FeoB_C: Ferrous iron 23.1 1.5E+02 0.0033 17.8 3.4 18 199-216 4-21 (54)
364 PF06422 PDR_CDR: CDR ABC tran 22.9 1.4E+02 0.003 20.9 3.5 21 193-213 48-68 (103)
365 PF10456 BAR_3_WASP_bdg: WASP- 22.9 3E+02 0.0066 22.5 6.0 59 35-93 33-91 (237)
366 PF14071 YlbD_coat: Putative c 22.9 3.1E+02 0.0067 20.0 5.4 14 53-66 68-81 (124)
367 COG1422 Predicted membrane pro 22.8 4E+02 0.0086 21.2 10.2 38 147-184 56-93 (201)
368 TIGR00606 rad50 rad50. This fa 22.6 8.8E+02 0.019 25.2 20.9 32 155-186 894-925 (1311)
369 PTZ00046 rifin; Provisional 22.5 1.1E+02 0.0024 26.7 3.5 22 197-218 320-341 (358)
370 PF10146 zf-C4H2: Zinc finger- 22.5 4.3E+02 0.0093 21.5 9.3 27 67-93 48-74 (230)
371 CHL00106 petL cytochrome b6/f 22.5 1.5E+02 0.0031 16.1 3.4 21 198-218 4-24 (31)
372 PF03908 Sec20: Sec20; InterP 22.3 2.6E+02 0.0056 18.9 11.7 21 153-173 40-60 (92)
373 KOG0570 Transcriptional coacti 22.2 4.1E+02 0.0089 21.2 10.0 80 7-92 74-160 (223)
374 COG0690 SecE Preprotein transl 22.1 2.1E+02 0.0045 18.6 4.1 15 176-190 21-35 (73)
375 PF11353 DUF3153: Protein of u 22.0 1.3E+02 0.0027 23.9 3.6 23 196-218 183-205 (209)
376 PF13163 DUF3999: Protein of u 22.0 72 0.0016 28.5 2.4 23 195-217 406-428 (429)
377 COG1196 Smc Chromosome segrega 21.9 8.7E+02 0.019 24.9 19.3 11 172-182 893-903 (1163)
378 PF03994 DUF350: Domain of Unk 21.9 1.1E+02 0.0024 18.3 2.6 19 201-219 1-19 (54)
379 PF08173 YbgT_YccB: Membrane b 21.9 1.4E+02 0.0031 15.7 3.1 15 198-212 6-20 (28)
380 COG5325 t-SNARE complex subuni 21.8 2.2E+02 0.0047 23.9 4.9 49 164-215 231-279 (283)
381 PF03670 UPF0184: Uncharacteri 21.8 2.7E+02 0.0057 18.9 6.9 22 36-57 26-47 (83)
382 PF09748 Med10: Transcription 21.7 3.3E+02 0.0071 19.8 5.7 49 42-90 2-51 (128)
383 PF04678 DUF607: Protein of un 21.6 3.8E+02 0.0083 20.6 9.3 64 150-216 51-114 (180)
384 PF08649 DASH_Dad1: DASH compl 21.5 2.2E+02 0.0048 17.8 5.1 14 137-150 32-45 (58)
385 COG1766 fliF Flagellar basal b 21.3 94 0.002 28.8 3.0 23 198-220 444-466 (545)
386 PF04048 Sec8_exocyst: Sec8 ex 21.3 3.4E+02 0.0074 20.0 8.8 18 9-26 42-59 (142)
387 PF08172 CASP_C: CASP C termin 21.3 2E+02 0.0043 23.7 4.7 40 178-217 197-239 (248)
388 PF11146 DUF2905: Protein of u 21.2 1.8E+02 0.0038 18.6 3.4 22 197-218 3-24 (64)
389 PF11802 CENP-K: Centromere-as 21.2 4.9E+02 0.011 21.7 11.5 54 4-58 86-139 (268)
390 PF04949 Transcrip_act: Transc 21.2 3.7E+02 0.0081 20.3 10.2 77 3-92 34-111 (159)
391 PF08657 DASH_Spc34: DASH comp 21.1 3.9E+02 0.0083 22.2 6.3 49 49-100 160-208 (259)
392 PRK15324 type III secretion sy 21.0 1.3E+02 0.0028 24.9 3.5 22 70-91 99-120 (252)
393 TIGR03521 GldG gliding-associa 21.0 1.7E+02 0.0037 27.0 4.7 25 194-218 522-546 (552)
394 PF13997 YqjK: YqjK-like prote 21.0 2.5E+02 0.0055 18.3 6.1 37 155-191 2-38 (73)
395 TIGR00255 conserved hypothetic 20.9 5.1E+02 0.011 21.8 7.9 38 130-168 253-290 (291)
396 COG1579 Zn-ribbon protein, pos 20.8 4.8E+02 0.01 21.4 17.0 26 35-60 30-55 (239)
397 PF10577 UPF0560: Uncharacteri 20.8 1.1E+02 0.0023 29.7 3.3 20 198-217 277-296 (807)
398 PF01708 Gemini_mov: Geminivir 20.7 29 0.00064 23.7 -0.2 19 202-220 41-59 (91)
399 PRK12659 putative monovalent c 20.7 1.6E+02 0.0034 21.2 3.6 23 198-220 77-99 (117)
400 PF15339 Afaf: Acrosome format 20.6 3.2E+02 0.0068 21.3 5.2 21 199-219 138-158 (200)
401 PF14715 FixP_N: N-terminal do 20.6 2E+02 0.0044 17.4 3.5 7 204-210 30-36 (51)
402 PRK08343 secD preprotein trans 20.6 1.4E+02 0.0031 26.6 4.0 23 197-219 262-284 (417)
403 PF02468 PsbN: Photosystem II 20.6 1.1E+02 0.0023 18.0 2.1 19 201-219 9-27 (43)
404 PF06009 Laminin_II: Laminin D 20.6 33 0.00072 25.4 0.0 9 161-169 29-37 (138)
405 PF05781 MRVI1: MRVI1 protein; 20.5 3.5E+02 0.0077 25.0 6.4 32 32-63 251-282 (538)
406 PF06705 SF-assemblin: SF-asse 20.5 4.7E+02 0.01 21.2 10.8 15 74-88 123-137 (247)
407 PF14712 Snapin_Pallidin: Snap 20.4 2.8E+02 0.006 18.5 9.4 26 67-92 59-84 (92)
408 KOG0812 SNARE protein SED5/Syn 20.3 5.4E+02 0.012 21.8 11.8 66 155-220 239-309 (311)
409 PTZ00464 SNF-7-like protein; P 20.2 4.6E+02 0.0099 21.0 12.1 36 151-191 100-135 (211)
410 PF08006 DUF1700: Protein of u 20.2 2.3E+02 0.005 21.7 4.7 29 49-77 4-32 (181)
411 PF06730 FAM92: FAM92 protein; 20.1 4.7E+02 0.01 21.1 12.2 21 6-26 24-44 (219)
412 PF11172 DUF2959: Protein of u 20.1 4.6E+02 0.0099 20.9 16.9 60 35-94 77-141 (201)
413 PF12420 DUF3671: Protein of u 20.0 3.2E+02 0.007 19.2 4.9 38 168-205 19-56 (104)
414 PF05151 PsbM: Photosystem II 20.0 1.7E+02 0.0036 15.8 3.6 9 210-218 20-28 (31)
No 1
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.7e-50 Score=306.84 Aligned_cols=220 Identities=54% Similarity=0.776 Sum_probs=209.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 027617 1 MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSD 80 (221)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~ 80 (221)
||++|+.||++|+.+.++|..+|+.+++.++++++..+++|+..+++|++++.+|+.|++.+||+.|..|..|+++|+.+
T Consensus 1 ms~~fe~yEqqy~~l~a~it~k~~~~~~~~~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksd 80 (220)
T KOG1666|consen 1 MSSLFEGYEQQYRELSAEITKKIGRALSLPGSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSD 80 (220)
T ss_pred CchHHHHHHHHHHHHHHHHHHhHHHHhcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccccchhhhhHhhhccccCcccccHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 027617 81 LNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSS 160 (221)
Q Consensus 81 l~~l~~~~~~~~~~~~~~~~r~~Ll~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~ 160 (221)
++.++.++++..+.....++|+++++....++...+.+||++++++++.|.+++++|.++++++.|||++|.+|+++|+.
T Consensus 81 l~~l~~e~k~~~~~~~~~~~rde~~~~~~add~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~ 160 (220)
T KOG1666|consen 81 LKKLKRELKRTTSRNLNAGDRDELLEALEADDQNISADQRARLLQNTERLERSTDRLKDSQRIALETEQIGSEILEDLHG 160 (220)
T ss_pred HHHHHHHHHHhhccccccchHHHHHhhhhccccccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999854444578899987765444445789999999999999999999999999999999999999999999
Q ss_pred hhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027617 161 QRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 161 Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
||++|.+++..+.++++++++|+++++.|.||+.+|||++++||++++++|++++|+||+
T Consensus 161 QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~kf~ 220 (220)
T KOG1666|consen 161 QREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSKFT 220 (220)
T ss_pred HHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999995
No 2
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.5e-24 Score=168.54 Aligned_cols=206 Identities=18% Similarity=0.285 Sum_probs=171.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhHhhccCh-HHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 027617 1 MSDVFERYERQYCEISANLSKKCTAAASLDG-ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKS 79 (221)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~ 79 (221)
|+.+|.+..... ++++..+.+++.... .+..+.+..++..+.++...+..|+..+...||..|++..-++.+.+.
T Consensus 1 m~~ly~~t~~~~----~k~q~~l~rlE~~~~~~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp~~rq~~rlr~dQl~~ 76 (213)
T KOG3251|consen 1 MDALYQSTNRQL----DKLQRGLIRLERTIKTQEVSAVENSIQRSIDQYASRCQRLDVLVSKEPPKSRQAARLRVDQLLE 76 (213)
T ss_pred CchHHHHHHHHH----HHHHHHHHHHHccccccchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHH
Confidence 778888776666 566666677765544 567788999999999999999999999999999988887777999999
Q ss_pred HHHHHHHHHHHHHcccc----chhhhhHhhhccccCcccccHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 027617 80 DLNNLKSEVKRLVSGNL----NAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSIL 155 (221)
Q Consensus 80 ~l~~l~~~~~~~~~~~~----~~~~r~~Ll~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~L~~s~~~~~ete~~g~~~~ 155 (221)
++..++..++++..... ..++|.+|+++.+..++++.. ...+......+.+.+|++++++....|.+|+
T Consensus 77 d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~~~~~~~~~~~-------~~~D~el~~~d~l~~s~~~lDd~l~~G~~il 149 (213)
T KOG3251|consen 77 DVEHLQTSLRTSMNRNNRREQQARERVELLDRRFTNGATGTS-------IPFDEELQENDSLKRSHNMLDDLLESGSAIL 149 (213)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCC-------CcchHHHHhhhHHHHHHhhHHHHHHHHHHHH
Confidence 99999999988875533 245688999886643211110 0135566788999999999999999999999
Q ss_pred HHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 156 QDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 156 ~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl~~ 217 (221)
++|.+||-.|.++++++.++.++||.|+.+|+-|.||.+.||+|+|+++++|++++++++||
T Consensus 150 e~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~~v~~yl~~~w 211 (213)
T KOG3251|consen 150 ENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVILTLVIMYLFYRW 211 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998887655443
No 3
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.7e-23 Score=161.11 Aligned_cols=210 Identities=21% Similarity=0.246 Sum_probs=174.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhHhhccC------------h-----HHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC
Q 027617 1 MSDVFERYERQYCEISANLSKKCTAAASLD------------G-----ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQ 63 (221)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~------------~-----~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~ 63 (221)
|++-|+...++.+++..+++.+|..+.... | ..-+..-.+|+..|.++.++.++|.. +...|
T Consensus 3 ~~s~we~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~-~~~s~ 81 (231)
T KOG3208|consen 3 SSSSWEALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMND-CASSP 81 (231)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHh-hccCC
Confidence 468999999999999999999999884321 1 13456777999999999999999987 33334
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhHhhhccccCc-ccccHHHHHHHhhhHHHHHhhHHHHHHHHH
Q 027617 64 PNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADA-LTASADQRSRLMMSTERVNQSTDRIKDSRR 142 (221)
Q Consensus 64 ~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~~~~~~-~~~~~~~r~~~~~~~~~l~~~~~~L~~s~~ 142 (221)
.+ -+...+.+++|++.|.++.++|++....+....+|+.|++++..+. ..+.... ....+.+.++.++|+++.+
T Consensus 82 a~-~aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s~~~~~~~~~~~~~----~~~~e~~lkE~~~in~s~~ 156 (231)
T KOG3208|consen 82 AN-SAAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERESLLESVRADISSYPSASG----FNRGEMYLKEHDHINNSIR 156 (231)
T ss_pred CC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccCC----CchHHHHHHHhccccchHH
Confidence 33 3578889999999999999999999988887889999998865442 1111110 1112667789999999999
Q ss_pred HHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 143 TMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILY 216 (221)
Q Consensus 143 ~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl~ 216 (221)
++++..++|.++.++|+.||..|.++..++.++...+|..|.+|.+|++|..+|.+|+.+||.+|+++++|.++
T Consensus 157 ~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llllfy~~ 230 (231)
T KOG3208|consen 157 LVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLLFYWI 230 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988765543
No 4
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=99.60 E-value=2.4e-14 Score=97.18 Aligned_cols=79 Identities=39% Similarity=0.673 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 12 YCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKR 90 (221)
Q Consensus 12 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~ 90 (221)
|..+.++|.++++.+++.+|++|+..++.++..|++|++++++|+.|++++|++.|..|..+++.|+.+++.++++|++
T Consensus 1 f~~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~~ 79 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELKK 79 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6788999999999999988999999999999999999999999999999999999999999999999999999999864
No 5
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=99.55 E-value=3.2e-14 Score=93.15 Aligned_cols=66 Identities=38% Similarity=0.595 Sum_probs=62.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHH
Q 027617 128 ERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRM 193 (221)
Q Consensus 128 ~~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~ 193 (221)
+.+.+++++|++|.+++++++++|.+|+.+|..||++|.++++++.+++++++.|+++|+.|.||.
T Consensus 1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~ 66 (66)
T PF12352_consen 1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK 66 (66)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence 357789999999999999999999999999999999999999999999999999999999999984
No 6
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=99.52 E-value=3.3e-13 Score=94.09 Aligned_cols=88 Identities=22% Similarity=0.366 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 132 QSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAI 211 (221)
Q Consensus 132 ~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii~il~i~i 211 (221)
+-+..|.++++++.+..+.|..+++.|.+|+++|..++++..++.+.+..++++++.+.|+..+||+++|+.++++++++
T Consensus 5 ~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v 84 (92)
T PF03908_consen 5 DVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVV 84 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 027617 212 ILILYFKL 219 (221)
Q Consensus 212 ~~vl~~k~ 219 (221)
+||+|.++
T Consensus 85 ~yI~~rRl 92 (92)
T PF03908_consen 85 LYILWRRL 92 (92)
T ss_pred HHHhhhcC
Confidence 99998764
No 7
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=3.3e-05 Score=62.43 Aligned_cols=190 Identities=13% Similarity=0.188 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccCh------HHHHHHHH-HHHhhHHHHHHHHHHHHHHhhcC--ChhHHHHHHHHH
Q 027617 4 VFERYERQYCEISANLSKKCTAAASLDG------ERKKQKVS-EIQTGLDEAESLIRKMDLEARSL--QPNVKAVLLAKL 74 (221)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~~~~~~------~~~~~~~~-~i~~~l~~~~~~l~~me~e~~~~--~~~~r~~~~~k~ 74 (221)
.|.-|+ +..++.+.++..+.+.....+ ++....++ .++..+..++..+.-++.-.... |..+-..=...+
T Consensus 8 ~~~v~~-e~~k~~~~~~~~~~r~~~~~~~~~~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide~El~~R~~~i 86 (235)
T KOG3202|consen 8 FFRVKN-ETLKLSEEIQGLYQRRSELLKDTGSDAEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDEFELSRRRRFI 86 (235)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcHHHHHHHHHHH
Confidence 444444 788888888888777633221 23333344 56666666666555554332221 222223344556
Q ss_pred HHHHHHHHHHHHHHHHHHccccchhhhhHhhhccccCc-------ccccHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHH
Q 027617 75 REYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADA-------LTASADQRSRLMMSTERVNQSTDRIKDSRRTMLET 147 (221)
Q Consensus 75 ~~~r~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~~~~~~-------~~~~~~~r~~~~~~~~~l~~~~~~L~~s~~~~~et 147 (221)
.+.+..+..++..|...... ....|..|++....++ .++.+........-...+..+...|+.....+.-.
T Consensus 87 ~~lr~q~~~~~~~~~~~~~~--~~~~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~~~qqqm~~eQDe~Ld~ls~ti~rl 164 (235)
T KOG3202|consen 87 DNLRTQLRQMKSKMAMSGFA--NSNIRDILLGPEKSPNLDEAMSRASGLDNVQEIVQLQQQMLQEQDEGLDGLSATVQRL 164 (235)
T ss_pred HHHHHHHHHHHHHHHhhccc--cccchhhhcCCCCCCchhhhHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777662211 1124777775432211 00111000000111244556777899999999999
Q ss_pred HHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHH
Q 027617 148 EELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNK 197 (221)
Q Consensus 148 e~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk 197 (221)
.++|..+-++|..|...|..-...++.+.+.+....+-+..+.+ +..++
T Consensus 165 k~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~~s~~ 213 (235)
T KOG3202|consen 165 KGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-MASQC 213 (235)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhccc
Confidence 99999999999999999999999999999999999999999999 44443
No 8
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00089 Score=54.98 Aligned_cols=78 Identities=15% Similarity=0.309 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 133 STDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIA 210 (221)
Q Consensus 133 ~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii~il~i~ 210 (221)
-...+.+....+.|.-++=.++..-...|.|.+.++++.+++++-+++.|.+.|-+.--|+-.|+|+++=|+++++++
T Consensus 225 R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivF 302 (311)
T KOG0812|consen 225 RAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVF 302 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 345677778888888888888888999999999999999999999999999999999999999999998666555444
No 9
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=98.15 E-value=0.00071 Score=55.77 Aligned_cols=82 Identities=13% Similarity=0.182 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 027617 137 IKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVV-AVLVIAIILIL 215 (221)
Q Consensus 137 L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii-~il~i~i~~vl 215 (221)
.+..-.++....+.+...-..|......|.++...++.-...++.++.-++.+.++... |.+|++| ++++++|++|+
T Consensus 169 ~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~--~~~~~~i~~v~~~Fi~mvl 246 (251)
T PF09753_consen 169 TEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG--CWTWLMIFVVIIVFIMMVL 246 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHH
Confidence 34445566666677777778899999999999999999999999999889888766555 5555443 34444555556
Q ss_pred HHHhc
Q 027617 216 YFKLA 220 (221)
Q Consensus 216 ~~k~~ 220 (221)
|.|||
T Consensus 247 ~iri~ 251 (251)
T PF09753_consen 247 FIRIF 251 (251)
T ss_pred HheeC
Confidence 65554
No 10
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.0036 Score=51.73 Aligned_cols=193 Identities=16% Similarity=0.148 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhcc---------C-hH----HHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHH
Q 027617 5 FERYERQYCEISANLSKKCTAAASL---------D-GE----RKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVL 70 (221)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~~~~---------~-~~----~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~ 70 (221)
|-+-.+|...++..+..+++.+.+. + +. +-..+-..|-..|..++..+.....-.+..||+.+.-.
T Consensus 59 wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~~~~ 138 (305)
T KOG0809|consen 59 WVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSERLLR 138 (305)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 5555677888888888888777332 1 11 11222334445566666666655555555566665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccccc-----hhhhhHhhhc----cc--cCcc-cccHHHHHHHh--hh-HHHHHhhHH
Q 027617 71 LAKLREYKSDLNNLKSEVKRLVSGNLN-----AAARDELLES----GM--ADAL-TASADQRSRLM--MS-TERVNQSTD 135 (221)
Q Consensus 71 ~~k~~~~r~~l~~l~~~~~~~~~~~~~-----~~~r~~Ll~~----~~--~~~~-~~~~~~r~~~~--~~-~~~l~~~~~ 135 (221)
..-...+-..+..+..+|+..++.+-. +.+-.+.+.+ .. ++.+ +....++++++ .+ .....+-..
T Consensus 139 ~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~~~~~~erE~ 218 (305)
T KOG0809|consen 139 KNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDRTFQEQQLMLFENNEEVVREREK 218 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhhhhHHHHHHHHHhcchHHHHHHHH
Confidence 455667777788888888887765421 0011112211 00 0100 11112222222 11 222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHH
Q 027617 136 RIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNK 197 (221)
Q Consensus 136 ~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk 197 (221)
.+......+.|..++=.+.-.-...|.-.+.+++-.+..+.-.+..|.+-+.+..+-..+++
T Consensus 219 EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~ 280 (305)
T KOG0809|consen 219 EVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNK 280 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCC
Confidence 45566666777777777777778899999999999999999999999999999988777775
No 11
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.93 E-value=0.00039 Score=47.88 Aligned_cols=86 Identities=19% Similarity=0.325 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 134 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIIL 213 (221)
Q Consensus 134 ~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii~il~i~i~~ 213 (221)
.+.+...+..++++.++-.+.++.+.+..+.|....++..++...-..=.+--+.+.|++.-.++-++++++++++++++
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~ 81 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIIL 81 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhh
Confidence 35677888889999999999999999999999999999999988888888888888888887777777766666666666
Q ss_pred HHHHHh
Q 027617 214 ILYFKL 219 (221)
Q Consensus 214 vl~~k~ 219 (221)
++++-+
T Consensus 82 ~i~~~~ 87 (89)
T PF00957_consen 82 IIIIVI 87 (89)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 665533
No 12
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.0098 Score=50.01 Aligned_cols=83 Identities=17% Similarity=0.286 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 027617 132 QSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLT---AMSRRMSRNKWIIGTVVAVLV 208 (221)
Q Consensus 132 ~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~---~i~rr~~~dk~Il~~ii~il~ 208 (221)
.-.+.+....+.+.|..++=.+...--..|.|.+.++...+......+..+..-++ ...++.++.|||.++++++++
T Consensus 203 ~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~ 282 (297)
T KOG0810|consen 203 ERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIII 282 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHH
Confidence 33456777778888888888888888899999999999999999999999988777 677777777766655555544
Q ss_pred HHHHHH
Q 027617 209 IAIILI 214 (221)
Q Consensus 209 i~i~~v 214 (221)
++++++
T Consensus 283 ~v~v~~ 288 (297)
T KOG0810|consen 283 VVLVVV 288 (297)
T ss_pred HHHhhh
Confidence 444333
No 13
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=97.88 E-value=0.0081 Score=48.05 Aligned_cols=81 Identities=17% Similarity=0.273 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 134 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSK----KVLTAMSRRMSRNKWIIGTVVAVLVI 209 (221)
Q Consensus 134 ~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~----~~l~~i~rr~~~dk~Il~~ii~il~i 209 (221)
..-|....+++.|..+.=+++-+....|.+....+.+.+.+...+++.+. +-++. .|..+.+||+-|+|+++.++
T Consensus 184 h~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avks-aRaaRkkki~c~gI~~iii~ 262 (280)
T COG5074 184 HQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKS-ARAARKKKIRCYGICFIIII 262 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHH-HHHHHhcceehhhhHHHHHH
Confidence 34577788889999999999889999999999999999999888887776 45555 67777888887777666666
Q ss_pred HHHHHH
Q 027617 210 AIILIL 215 (221)
Q Consensus 210 ~i~~vl 215 (221)
+|++|+
T Consensus 263 viv~vv 268 (280)
T COG5074 263 VIVVVV 268 (280)
T ss_pred HHHHHH
Confidence 655554
No 14
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.0017 Score=46.40 Aligned_cols=83 Identities=14% Similarity=0.306 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 134 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSK----SKKVLTAMSRRMSRNKWIIGTVVAVLVI 209 (221)
Q Consensus 134 ~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~----s~~~l~~i~rr~~~dk~Il~~ii~il~i 209 (221)
++++.++.+.++|+.++-.+-.+..-+--++|....++.+.+...-.. |.++=+.|--+.++-++|+++|++++++
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~ 107 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV 107 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466888899999999999999988888888888888887776655443 4455556666667777777777777777
Q ss_pred HHHHHHH
Q 027617 210 AIILILY 216 (221)
Q Consensus 210 ~i~~vl~ 216 (221)
+|++.+|
T Consensus 108 iiii~~~ 114 (116)
T KOG0860|consen 108 VIIIYIF 114 (116)
T ss_pred HHHHHHh
Confidence 6655554
No 15
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.0011 Score=47.14 Aligned_cols=80 Identities=13% Similarity=0.198 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 135 DRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILI 214 (221)
Q Consensus 135 ~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii~il~i~i~~v 214 (221)
..++.-..-+.-...+.-+|..+...|...|.+..+.++.+.+-|+.+-.-++.|.|+ -..-|+|..+++++++++++
T Consensus 36 e~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~--sg~~l~~~m~~f~lV~~fi~ 113 (118)
T KOG3385|consen 36 EAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR--SGISLLCWMAVFSLVAFFIL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHh
Confidence 3455556667777788888899999999999999999999999999999999999999 44445554555555554444
Q ss_pred HH
Q 027617 215 LY 216 (221)
Q Consensus 215 l~ 216 (221)
+|
T Consensus 114 ~~ 115 (118)
T KOG3385|consen 114 WV 115 (118)
T ss_pred he
Confidence 44
No 16
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.083 Score=43.81 Aligned_cols=89 Identities=13% Similarity=0.109 Sum_probs=65.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 027617 131 NQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRR---MSRNKWIIGTVVAVL 207 (221)
Q Consensus 131 ~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr---~~~dk~Il~~ii~il 207 (221)
..-...+.+.++-+.|..++=.+.-.=.+.|.+.+..|...+..+..++..++.-+++=.+- ...-++|+.+|+++.
T Consensus 176 eeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v~~~v 255 (269)
T KOG0811|consen 176 EEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLVGGPV 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHH
Confidence 33455677778888888888888888889999999999999999999999999888765443 233345555555555
Q ss_pred HHHHHHHHHHHh
Q 027617 208 VIAIILILYFKL 219 (221)
Q Consensus 208 ~i~i~~vl~~k~ 219 (221)
++++++++|+.+
T Consensus 256 ~lii~l~i~~~~ 267 (269)
T KOG0811|consen 256 GLIIGLIIAGIA 267 (269)
T ss_pred HHHHHHHHHHhh
Confidence 555666666543
No 17
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=97.14 E-value=0.11 Score=42.82 Aligned_cols=87 Identities=18% Similarity=0.209 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 027617 133 STDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSR-RMSRNKWIIGTVVAVLVIAI 211 (221)
Q Consensus 133 ~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~r-r~~~dk~Il~~ii~il~i~i 211 (221)
-...+.+..+-+.|..++=.+.-.-..+|.+...++...+..+..++..|++-+.+... +..+.||-+|+.++++++++
T Consensus 193 r~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~vv~l 272 (283)
T COG5325 193 RDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVVLL 272 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHHHHH
Confidence 34567788888888888888888888999999999999999999999999977766544 56778888888888888887
Q ss_pred HHHHHHHh
Q 027617 212 ILILYFKL 219 (221)
Q Consensus 212 ~~vl~~k~ 219 (221)
++++..|.
T Consensus 273 fv~l~~kl 280 (283)
T COG5325 273 FVSLIKKL 280 (283)
T ss_pred HHHHHHHh
Confidence 77766654
No 18
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=96.87 E-value=0.0098 Score=37.90 Aligned_cols=61 Identities=15% Similarity=0.252 Sum_probs=54.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHH
Q 027617 128 ERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTA 188 (221)
Q Consensus 128 ~~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~ 188 (221)
..+......|......+.++.++|.++...+..|++.|.++...++.+...+..+.+-++.
T Consensus 5 ~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~ 65 (66)
T smart00397 5 QMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 3455677889999999999999999999999999999999999999999999999876653
No 19
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.22 Score=41.79 Aligned_cols=87 Identities=14% Similarity=0.268 Sum_probs=73.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 131 NQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIA 210 (221)
Q Consensus 131 ~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii~il~i~ 210 (221)
+...+-...+.+.+.|+..+-.-..+.+..|-+.|..+.+...++..++..+|.-|++..+.....+..+.+.++||.++
T Consensus 228 n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf~ 307 (316)
T KOG3894|consen 228 NELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSFS 307 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 33445566778888999999999999999999999999999999999999999999999999888877776777777777
Q ss_pred HHHHHHH
Q 027617 211 IILILYF 217 (221)
Q Consensus 211 i~~vl~~ 217 (221)
++|+-||
T Consensus 308 lLFldwy 314 (316)
T KOG3894|consen 308 LLFLDWY 314 (316)
T ss_pred HHHHhhc
Confidence 7776665
No 20
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.0054 Score=50.87 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=56.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHH
Q 027617 130 VNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSR 191 (221)
Q Consensus 130 l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~r 191 (221)
...+..+-.++..++.++...|..|+..|..|+++|.+|...++.+...+..+.+.|+.+..
T Consensus 74 ~~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~ 135 (273)
T KOG3065|consen 74 AQESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKG 135 (273)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 34566777888899999999999999999999999999999999999999999999998864
No 21
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=96.77 E-value=0.2 Score=39.96 Aligned_cols=79 Identities=11% Similarity=0.124 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027617 143 TMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK 221 (221)
Q Consensus 143 ~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl~~k~~~ 221 (221)
++-....-+.+.-..|....+++..+...++.-...|+..+.-+.........+.+.+..+|++|+.+|..|++.+||+
T Consensus 163 LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sFVsMiliiqifk 241 (244)
T KOG2678|consen 163 LARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSFVSMILIIQIFK 241 (244)
T ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444455566788999999999999999999999999999999999988888888888888999999999998885
No 22
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=96.07 E-value=0.058 Score=34.78 Aligned_cols=58 Identities=17% Similarity=0.285 Sum_probs=45.1
Q ss_pred HhHHHHhcchhchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027617 163 QSLLHAHNTLHGVDDNVSKSK-KVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 163 e~l~~~~~~~~~i~~~l~~s~-~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
.....+.++++.++..+..++ .+..++.++.-+|--|+|++++-+++.+++++..++|
T Consensus 12 ~~~~~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~v~Glii~~~~~~l~~~~ 70 (70)
T PF04210_consen 12 DDFNEIMKRLDEIEEKVEFTNAEIAQRAGKKIGRDIGILYGLVIGLIIFIIYIVLSSMF 70 (70)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345667778888888888777 5667889999999999999888887777777766554
No 23
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.01 E-value=0.59 Score=37.14 Aligned_cols=85 Identities=20% Similarity=0.145 Sum_probs=47.6
Q ss_pred HhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHH-HHHHHHHH
Q 027617 123 LMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRM-SRNKWIIG 201 (221)
Q Consensus 123 ~~~~~~~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~-~~dk~Il~ 201 (221)
+-..++++.++......+..+..++.+==..=.+.|..-|+.|..+++.+......| +...+++.+.. ...-+|++
T Consensus 130 LeRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL---~tM~RR~~~nk~~~~aii~~ 206 (220)
T KOG1666|consen 130 LERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKIL---TTMTRRLIRNKFTLTAIIAL 206 (220)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666655544444446677777777777777776655544 33444444444 44444555
Q ss_pred HHHHHHHHH
Q 027617 202 TVVAVLVIA 210 (221)
Q Consensus 202 ~ii~il~i~ 210 (221)
.++++++++
T Consensus 207 l~~~il~il 215 (220)
T KOG1666|consen 207 LVLAILLIL 215 (220)
T ss_pred HHHHHHHHH
Confidence 555444443
No 24
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=96.00 E-value=0.12 Score=32.80 Aligned_cols=59 Identities=14% Similarity=0.257 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHH
Q 027617 134 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRR 192 (221)
Q Consensus 134 ~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr 192 (221)
...|......+.+..+++.++-..+..|.+.|.++...++.+...+..++.-+....+.
T Consensus 3 d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~ 61 (63)
T PF05739_consen 3 DEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35577788889999999999999999999999999999999999999999988887765
No 25
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=95.70 E-value=0.11 Score=34.38 Aligned_cols=58 Identities=14% Similarity=0.335 Sum_probs=44.6
Q ss_pred HhHHHHhcchhchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027617 163 QSLLHAHNTLHGVDDNVSKSK-KVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 163 e~l~~~~~~~~~i~~~l~~s~-~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
+-...+.+++++++..+..++ .+-.++.++.=+|=-|+|++++-++++++++.+..++
T Consensus 15 ~d~~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~viGlli~~i~~~~~~~~ 73 (77)
T PRK01026 15 KDFKEIQKRLDEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLVIGLLIVLVYIILSPIF 73 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888887 4567888899999999998888777776666665543
No 26
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=95.64 E-value=0.13 Score=33.17 Aligned_cols=57 Identities=18% Similarity=0.287 Sum_probs=43.5
Q ss_pred hHHHHhcchhchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027617 164 SLLHAHNTLHGVDDNVSKSK-KVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 164 ~l~~~~~~~~~i~~~l~~s~-~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
-...+.+++++++..+..++ .+..+..++.-+|--|+|++++-+++++++.+.+.+|
T Consensus 13 d~~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~viGlli~~~~~~l~~~f 70 (70)
T TIGR01149 13 EFNEVMKRLDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVIGLILFLIYILLSSMF 70 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45567778888888888777 5667888999999999998888777766666666543
No 27
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.57 E-value=0.59 Score=37.34 Aligned_cols=69 Identities=22% Similarity=0.248 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 144 MLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILIL 215 (221)
Q Consensus 144 ~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl 215 (221)
+.+..+...+...+|..+.+.| ...+..+...+......+....+....+.|+..++++++.+++++|+
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L---~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlil 191 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKL---KNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLL 191 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 3333334444455566666666 34455556666666666777777766665655566666666666554
No 28
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=95.56 E-value=0.1 Score=33.61 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=37.8
Q ss_pred HHHhcchhchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027617 166 LHAHNTLHGVDDNVSKSK-KVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 166 ~~~~~~~~~i~~~l~~s~-~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
..++++++++...+.-.+ .+-.++.++.-+|--|+|++++-++++.++++..+.|
T Consensus 18 ne~~kRLdeieekvef~~~Ev~Qr~GkkiGRDIGILYGlVIGlil~~i~~~l~~~~ 73 (75)
T COG4064 18 NEIHKRLDEIEEKVEFVNGEVYQRIGKKIGRDIGILYGLVIGLILCMIYILLGVAF 73 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666665 4557889999999999997776666665666655544
No 29
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=94.78 E-value=0.82 Score=31.14 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=40.0
Q ss_pred HHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 155 LQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILIL 215 (221)
Q Consensus 155 ~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl 215 (221)
+++|..+.+.|...-..+.. .|.++=+.|-.+.++-.+|++++++++++++++++
T Consensus 33 L~~L~~kt~~L~~~a~~F~k------~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i~~~~ 87 (89)
T PF00957_consen 33 LEELEDKTEELSDNAKQFKK------NAKKLKRKMWWRNYKLYIIIIIIVIIIILIIIIVI 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHH
Confidence 56666677766666555543 66677778888888888888888888877777654
No 30
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=94.60 E-value=0.3 Score=30.22 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHH
Q 027617 134 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTA 188 (221)
Q Consensus 134 ~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~ 188 (221)
...|......+.+..+++.++-..+..|.+.|.++...++.+...+..+.+-+.+
T Consensus 5 ~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k 59 (60)
T cd00193 5 DEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3557777888889999999999999999999999999999999999998876653
No 31
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.24 E-value=4.5 Score=37.37 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCh--hHHHHHHHHHHHHHHHHHHHHH
Q 027617 9 ERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQP--NVKAVLLAKLREYKSDLNNLKS 86 (221)
Q Consensus 9 e~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~--~~r~~~~~k~~~~r~~l~~l~~ 86 (221)
+.++..+-+++...+..+..++.++-......+...|+ .+.+.|+.|+..-+. ...+.+...+...+.....+..
T Consensus 251 ~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id---~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~ 327 (560)
T PF06160_consen 251 EEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERID---QLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKE 327 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555554333 334455555543221 1233455555556666666666
Q ss_pred HHHHHHccc
Q 027617 87 EVKRLVSGN 95 (221)
Q Consensus 87 ~~~~~~~~~ 95 (221)
++.++...+
T Consensus 328 e~~~v~~sY 336 (560)
T PF06160_consen 328 ELERVSQSY 336 (560)
T ss_pred HHHHHHHhc
Confidence 666665443
No 32
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=93.75 E-value=0.27 Score=31.03 Aligned_cols=33 Identities=12% Similarity=0.345 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 184 KVLTAMSRRMSRNKWIIGTVVAVLVIAIILILY 216 (221)
Q Consensus 184 ~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl~ 216 (221)
....+-.+|..+-++|+++++++++++++++.|
T Consensus 26 ~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~~~ 58 (59)
T PF09889_consen 26 EEYRKRQKRMRKTQYIFFGIFILFLAVWIFMTF 58 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555667777788888888777766555544
No 33
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=91.61 E-value=6.9 Score=32.36 Aligned_cols=77 Identities=21% Similarity=0.243 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhccCh------HHHHHHHHHHHhhHHHHHHHHHHHHHHhh---cCChhHHHHHHHHHH
Q 027617 5 FERYERQYCEISANLSKKCTAAASLDG------ERKKQKVSEIQTGLDEAESLIRKMDLEAR---SLQPNVKAVLLAKLR 75 (221)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~~~~~~------~~~~~~~~~i~~~l~~~~~~l~~me~e~~---~~~~~~r~~~~~k~~ 75 (221)
....+.++..+..++...........- .....+...|......++.++.++...-. ..|+. .+...++
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~---~l~~~l~ 130 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSE---DLQRALA 130 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHH---HHHHHHH
Confidence 566677777777777776666543221 23344555666666666666666654444 33433 3333444
Q ss_pred HHHHHHHHH
Q 027617 76 EYKSDLNNL 84 (221)
Q Consensus 76 ~~r~~l~~l 84 (221)
+.+.-+..+
T Consensus 131 ea~~mL~em 139 (264)
T PF06008_consen 131 EAQRMLEEM 139 (264)
T ss_pred HHHHHHHHH
Confidence 444444444
No 34
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.10 E-value=0.96 Score=35.58 Aligned_cols=84 Identities=8% Similarity=0.122 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 134 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIIL 213 (221)
Q Consensus 134 ~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii~il~i~i~~ 213 (221)
-+.|.+.+..+.|..++..+-.+.+.+-.|.|+=--++...+.++-..=++.-+++.|.++-..+=+.++++++++.+++
T Consensus 124 id~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iy 203 (217)
T KOG0859|consen 124 ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIY 203 (217)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHH
Confidence 56788899999999999999999999999988887788777777777666777777776654444334444444444444
Q ss_pred HHHH
Q 027617 214 ILYF 217 (221)
Q Consensus 214 vl~~ 217 (221)
|++.
T Consensus 204 iiv~ 207 (217)
T KOG0859|consen 204 IIVA 207 (217)
T ss_pred HHHH
Confidence 4443
No 35
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=90.88 E-value=8.2 Score=31.90 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=14.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 027617 128 ERVNQSTDRIKDSRRTMLETEELGVSILQDLS 159 (221)
Q Consensus 128 ~~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~ 159 (221)
..+.+-.+.|++|...+.+++.+-...-..|.
T Consensus 192 ~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~ 223 (264)
T PF06008_consen 192 AKLQDLRDLLNEAQNKTREAEDLNRANQKNLE 223 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333333
No 36
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=90.32 E-value=0.4 Score=29.55 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 184 KVLTAMSRRMSRNKWIIGTVVAVLVIAIILIL 215 (221)
Q Consensus 184 ~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl 215 (221)
+..+.+-+|..+||..+++++++++++++.++
T Consensus 3 s~~~~~~~~f~~nk~a~~gl~il~~~vl~ai~ 34 (56)
T PF12911_consen 3 SPWKDAWRRFRRNKLAVIGLIILLILVLLAIF 34 (56)
T ss_pred CHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 34577889999999988887777776665554
No 37
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=90.06 E-value=8.8 Score=30.94 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhHHhhHhHHHHhcchhc
Q 027617 146 ETEELGVSILQDLSSQRQSLLHAHNTLHG 174 (221)
Q Consensus 146 ete~~g~~~~~~L~~Qre~l~~~~~~~~~ 174 (221)
+++++...+..++..+|+-+.+...++..
T Consensus 110 ~tde~k~~~~~ei~k~r~e~~~ml~evK~ 138 (230)
T PF03904_consen 110 DTDELKNIAQNEIKKVREENKSMLQEVKQ 138 (230)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888888888887777776554
No 38
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=89.26 E-value=22 Score=34.43 Aligned_cols=89 Identities=17% Similarity=0.341 Sum_probs=45.1
Q ss_pred HHHhhHHHHHHHHHH-HHHHHHHHHHHHHHhHHhhHhHHHHhcchhchh-hhH----HHHHHHHHH---HHHHHHHHHHH
Q 027617 129 RVNQSTDRIKDSRRT-MLETEELGVSILQDLSSQRQSLLHAHNTLHGVD-DNV----SKSKKVLTA---MSRRMSRNKWI 199 (221)
Q Consensus 129 ~l~~~~~~L~~s~~~-~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~-~~l----~~s~~~l~~---i~rr~~~dk~I 199 (221)
...++...+++.-.. ..+|..+-..+...|...++.+...-+.+...- +.+ ..+.+.++. .-.+--..+|+
T Consensus 336 ~v~~~~~~~~~ip~~v~~qt~~~v~~ik~~l~~~~~~i~~~a~~i~~~~~~~~s~~~~~~~~~~~~~~~~~~~y~~yR~~ 415 (806)
T PF05478_consen 336 IVQEGNSRFNDIPEKVQNQTSDVVPPIKRDLDSIGKQIRSQAKQIPNQIDSNISDILNNTERSSRSFEDEYEKYDSYRWI 415 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 344555555554333 345666666666777777766666555555431 111 111111111 12334455777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027617 200 IGTVVAVLVIAIILILYF 217 (221)
Q Consensus 200 l~~ii~il~i~i~~vl~~ 217 (221)
.++++.+++++|+++++.
T Consensus 416 ~~lil~~~llLIv~~~~l 433 (806)
T PF05478_consen 416 VGLILCCVLLLIVLCLLL 433 (806)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 766666666665555544
No 39
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.16 E-value=19 Score=33.42 Aligned_cols=83 Identities=19% Similarity=0.266 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCh--hHHHHHHHHHHHHHHHHHHHHH
Q 027617 9 ERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQP--NVKAVLLAKLREYKSDLNNLKS 86 (221)
Q Consensus 9 e~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~--~~r~~~~~k~~~~r~~l~~l~~ 86 (221)
+.++..+-++|...+..+..+..+.....+..+...|+.+- +.|+.|+..-+. .....+...+...+.....+..
T Consensus 255 ~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Ly---d~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~ 331 (569)
T PRK04778 255 EKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLY---DILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKE 331 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444455554444555555544454555554444433 333444332221 1123455555566666666666
Q ss_pred HHHHHHcc
Q 027617 87 EVKRLVSG 94 (221)
Q Consensus 87 ~~~~~~~~ 94 (221)
++.++...
T Consensus 332 Ei~~l~~s 339 (569)
T PRK04778 332 EIDRVKQS 339 (569)
T ss_pred HHHHHHHc
Confidence 66665544
No 40
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.10 E-value=9.1 Score=30.64 Aligned_cols=65 Identities=12% Similarity=0.170 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHH
Q 027617 135 DRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWI 199 (221)
Q Consensus 135 ~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~I 199 (221)
..+..-...+.++..+....++++..-.+.|......-.+....-..-.+..+.|.++..-+++-
T Consensus 134 ~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~a 198 (216)
T KOG0862|consen 134 RNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYA 198 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44555566667777777777888887777777777666666666666667777777777666654
No 41
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=88.77 E-value=4.5 Score=27.49 Aligned_cols=57 Identities=23% Similarity=0.370 Sum_probs=45.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 027617 37 KVSEIQTGLDEAESLIRKMDLEARS--LQPNVKAVLLAKLREYKSDLNNLKSEVKRLVS 93 (221)
Q Consensus 37 ~~~~i~~~l~~~~~~l~~me~e~~~--~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~ 93 (221)
.+..++..+.++..-++.++.-++. +||..|..+...+...+..+..+.+++..+..
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3556677788888888888877765 56777888988889999999999988888764
No 42
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=87.70 E-value=2.5 Score=26.61 Aligned_cols=33 Identities=6% Similarity=0.218 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027617 188 AMSRRMSRNKWIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 188 ~i~rr~~~dk~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
.+.++..+.+-..++.++++++++++++|..||
T Consensus 27 ~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~~~~ 59 (59)
T PF09889_consen 27 EYRKRQKRMRKTQYIFFGIFILFLAVWIFMTFF 59 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456666777778899999999999988888775
No 43
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=86.83 E-value=7.2 Score=25.98 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=29.9
Q ss_pred HHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 41 IQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91 (221)
Q Consensus 41 i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~ 91 (221)
++-.+++++.--..+..++..+. +.|..+..+-.+++.+....+..++.+
T Consensus 23 LqmEieELKekn~~L~~e~~~~~-~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQ-HQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556555555555555432 235567777777777777777666544
No 44
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=86.67 E-value=9.3 Score=31.36 Aligned_cols=20 Identities=0% Similarity=0.195 Sum_probs=12.4
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q 027617 39 SEIQTGLDEAESLIRKMDLE 58 (221)
Q Consensus 39 ~~i~~~l~~~~~~l~~me~e 58 (221)
-+++..+..+++.+.+++.+
T Consensus 27 ~rl~~yv~~L~~~l~~L~~~ 46 (251)
T PF09753_consen 27 WRLEKYVETLREMLEELEES 46 (251)
T ss_pred HhHHHHHHHHHHHHHHHHhc
Confidence 34555566666666666665
No 45
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=85.70 E-value=6.2 Score=30.41 Aligned_cols=58 Identities=12% Similarity=0.315 Sum_probs=47.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhcCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 027617 37 KVSEIQTGLDEAESLIRKMDLEARSLQPNV-KAVLLAKLREYKSDLNNLKSEVKRLVSG 94 (221)
Q Consensus 37 ~~~~i~~~l~~~~~~l~~me~e~~~~~~~~-r~~~~~k~~~~r~~l~~l~~~~~~~~~~ 94 (221)
-+..++..++.+...+..|+.|++.+++.. -..++.++.+.+.++..++..+..++..
T Consensus 87 ~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g 145 (201)
T KOG4603|consen 87 KIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAG 145 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366778889999999999999999887654 4578888888888888888888777643
No 46
>PRK14762 membrane protein; Provisional
Probab=85.41 E-value=1 Score=22.94 Aligned_cols=18 Identities=22% Similarity=0.576 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027617 197 KWIIGTVVAVLVIAIILI 214 (221)
Q Consensus 197 k~Il~~ii~il~i~i~~v 214 (221)
|+++|.+.+++++.++.|
T Consensus 2 ki~lw~i~iifligllvv 19 (27)
T PRK14762 2 KIILWAVLIIFLIGLLVV 19 (27)
T ss_pred eeHHHHHHHHHHHHHHHH
Confidence 567887777777665443
No 47
>PHA02650 hypothetical protein; Provisional
Probab=85.40 E-value=1.7 Score=28.83 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 027617 197 KWIIGTVVAVLVIAIILILYFKLAK 221 (221)
Q Consensus 197 k~Il~~ii~il~i~i~~vl~~k~~~ 221 (221)
.++++++++++++++++++|.|..+
T Consensus 50 ~~~ii~i~~v~i~~l~~flYLK~~~ 74 (81)
T PHA02650 50 QNFIFLIFSLIIVALFSFFVFKGYT 74 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444556667777778888988753
No 48
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=85.14 E-value=3.4 Score=24.25 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 189 MSRRMSRNKWIIGTVVAVLVIAIILILY 216 (221)
Q Consensus 189 i~rr~~~dk~Il~~ii~il~i~i~~vl~ 216 (221)
=.|+..++-++=+..|++|++.|++++.
T Consensus 23 qar~~lq~lfvnf~lilicllli~iivm 50 (52)
T TIGR01294 23 QARQNLQNLFINFCLILICLLLICIIVM 50 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777766654
No 49
>PHA03240 envelope glycoprotein M; Provisional
Probab=85.02 E-value=0.99 Score=35.93 Aligned_cols=21 Identities=29% Similarity=0.781 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027617 199 IIGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 199 Il~~ii~il~i~i~~vl~~k~ 219 (221)
+.|++|++++++|++++++||
T Consensus 213 ~~WIiilIIiIiIIIL~cfKi 233 (258)
T PHA03240 213 IAWIFIAIIIIIVIILFFFKI 233 (258)
T ss_pred HhHHHHHHHHHHHHHHHHHhc
Confidence 456666666666666777765
No 50
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=84.48 E-value=11 Score=26.62 Aligned_cols=58 Identities=16% Similarity=0.337 Sum_probs=46.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhcCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 35 KQKVSEIQTGLDEAESLIRKMDLEARSLQPNV-KAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 35 ~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~-r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
+.-+..+...+...+.-+..+|.++..+|... =..+.-.+.+.+.+++.+...++.+.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45566777888888999999999999999865 45688888888888888888886654
No 51
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.26 E-value=20 Score=28.83 Aligned_cols=151 Identities=14% Similarity=0.170 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcc--ChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHH
Q 027617 4 VFERYERQYCEISANLSKKCTAAASL--DGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDL 81 (221)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l 81 (221)
.|.+.+.|+..+++++....+.+..+ +|.-- ..+-..|..=.+.++.+..|.+.+-.+ +...++ .
T Consensus 52 s~ks~~~eie~LLeql~~vndsm~~~~~s~a~~----aa~~htL~RHrEILqdy~qef~rir~n--------~~a~~e-~ 118 (231)
T KOG3208|consen 52 SFKSLENEIEGLLEQLQDVNDSMNDCASSPANS----AAVMHTLQRHREILQDYTQEFRRIRSN--------IDAKRE-R 118 (231)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhccCCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH-H
Confidence 58888899999999888888877552 11111 122333444444444444444422111 111111 1
Q ss_pred HHHHHHHHHHHccccchhhhhHhhhccccCcccccHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 027617 82 NNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQ 161 (221)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~r~~Ll~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Q 161 (221)
..+...+ |+.- .+++..++. ..++.++...+.++.....+++...+|.+|-+.-..=...|..=
T Consensus 119 ~~Ll~s~------------~~~~--~~~~~~~~~--~~~e~~lkE~~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i 182 (231)
T KOG3208|consen 119 ESLLESV------------RADI--SSYPSASGF--NRGEMYLKEHDHINNSIRLVDELISQAQATRENLHSQRSVLGGI 182 (231)
T ss_pred HHHHHHH------------hhhh--ccCCccCCC--chHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 1111111 1111 111111111 12245667778888888889999999999988888778888888
Q ss_pred hHhHHHHhcchhchhhhHHHHH
Q 027617 162 RQSLLHAHNTLHGVDDNVSKSK 183 (221)
Q Consensus 162 re~l~~~~~~~~~i~~~l~~s~ 183 (221)
..++.++-.++.-|.+-+.+.+
T Consensus 183 ~~k~~~~a~r~P~IN~Ll~kIk 204 (231)
T KOG3208|consen 183 NNKVNNIANRFPAINQLLQKIK 204 (231)
T ss_pred HHHHHHHHHhcchHHHHHHHHH
Confidence 9999999999999998888775
No 52
>PHA02819 hypothetical protein; Provisional
Probab=83.76 E-value=2.3 Score=27.53 Aligned_cols=24 Identities=29% Similarity=0.686 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 027617 198 WIIGTVVAVLVIAIILILYFKLAK 221 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~~~ 221 (221)
+++.++++++++++++++|.|..|
T Consensus 48 ~~ii~l~~~~~~~~~~flYLK~~~ 71 (71)
T PHA02819 48 YLIIGLVTIVFVIIFIIFYLKVIK 71 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444456666777777888988764
No 53
>PF12669 P12: Virus attachment protein p12 family
Probab=83.42 E-value=0.76 Score=28.88 Aligned_cols=8 Identities=13% Similarity=0.102 Sum_probs=3.8
Q ss_pred HHHHHHhc
Q 027617 213 LILYFKLA 220 (221)
Q Consensus 213 ~vl~~k~~ 220 (221)
++++++|+
T Consensus 14 ~v~~r~~~ 21 (58)
T PF12669_consen 14 YVAIRKFI 21 (58)
T ss_pred HHHHHHHH
Confidence 44445554
No 54
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=83.36 E-value=4.2 Score=23.88 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 190 SRRMSRNKWIIGTVVAVLVIAIILILY 216 (221)
Q Consensus 190 ~rr~~~dk~Il~~ii~il~i~i~~vl~ 216 (221)
.|+..++-++=+..|++|++.|++++.
T Consensus 24 a~qnlqelfvnfclilicllli~iiv~ 50 (52)
T PF04272_consen 24 ARQNLQELFVNFCLILICLLLICIIVM 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566667777777777777666553
No 55
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=83.02 E-value=1.6 Score=25.10 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 027617 199 IIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 199 Il~~ii~il~i~i~~vl~~k~~ 220 (221)
+++++.++.+.++..++|.||.
T Consensus 13 VF~lVglv~i~iva~~iYRKw~ 34 (43)
T PF08114_consen 13 VFCLVGLVGIGIVALFIYRKWQ 34 (43)
T ss_pred ehHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566667788888873
No 56
>PHA02844 putative transmembrane protein; Provisional
Probab=82.55 E-value=2.4 Score=27.80 Aligned_cols=24 Identities=25% Similarity=0.366 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 027617 198 WIIGTVVAVLVIAIILILYFKLAK 221 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~~~ 221 (221)
+++.+++++++++++.++|.|..+
T Consensus 50 ~~ii~i~~v~~~~~~~flYLK~~~ 73 (75)
T PHA02844 50 IWILTIIFVVFATFLTFLYLKAVP 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHheec
Confidence 334446666666777888888653
No 57
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=82.18 E-value=11 Score=24.44 Aligned_cols=24 Identities=33% Similarity=0.696 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 193 MSRNKWIIGTVVAVLVIAIILILY 216 (221)
Q Consensus 193 ~~~dk~Il~~ii~il~i~i~~vl~ 216 (221)
....||+..+++..++.+++.+++
T Consensus 47 ~~n~kW~~r~iiGaiI~~i~~~i~ 70 (71)
T PF10779_consen 47 KSNTKWIWRTIIGAIITAIIYLII 70 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345578888777777766555443
No 58
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.61 E-value=12 Score=24.30 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=8.6
Q ss_pred Cc-hHHHHHHHHHHHHHH
Q 027617 1 MS-DVFERYERQYCEISA 17 (221)
Q Consensus 1 Ms-~~f~~ye~e~~~~~~ 17 (221)
|| ++|+..|..+...++
T Consensus 1 MSlEv~ekLE~KiqqAvd 18 (79)
T COG3074 1 MSLEVFEKLEAKVQQAID 18 (79)
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 44 555555555444443
No 59
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=81.50 E-value=1.6 Score=34.21 Aligned_cols=22 Identities=32% Similarity=0.612 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 027617 200 IGTVVAVLVIAIILILYFKLAK 221 (221)
Q Consensus 200 l~~ii~il~i~i~~vl~~k~~~ 221 (221)
+.|||+.|.+.-++++.|||.|
T Consensus 164 iGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 164 IGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred hhHHHHHHHHHHHHHHHhhhcc
Confidence 3444444555555566677876
No 60
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=81.11 E-value=0.9 Score=31.97 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027617 196 NKWIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 196 dk~Il~~ii~il~i~i~~vl~~ 217 (221)
+-+++.++.++|+++++++|||
T Consensus 62 ~iili~lls~v~IlVily~IyY 83 (101)
T PF06024_consen 62 NIILISLLSFVCILVILYAIYY 83 (101)
T ss_pred cchHHHHHHHHHHHHHHhhheE
Confidence 3455566666667777777776
No 61
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=80.60 E-value=19 Score=28.03 Aligned_cols=50 Identities=10% Similarity=0.236 Sum_probs=26.9
Q ss_pred chhchhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Q 027617 171 TLHGVDDNVSKSKKVLTAMSRRMSRN-KWIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 171 ~~~~i~~~l~~s~~~l~~i~rr~~~d-k~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
++..+..++..-...-..|..+.... +.++|++++++++-.+++.|.-|+
T Consensus 65 ~l~~~~~el~~le~~k~~id~~A~~~~~~~~w~gl~~l~~q~~~l~rLTf~ 115 (180)
T PF04678_consen 65 RLEELRQELAPLEKIKQEIDEKAEKRARRLLWGGLALLVVQFGILARLTFW 115 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444333 566777777777766666665553
No 62
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=80.18 E-value=73 Score=32.49 Aligned_cols=17 Identities=6% Similarity=0.169 Sum_probs=6.4
Q ss_pred HhHHHHhcchhchhhhH
Q 027617 163 QSLLHAHNTLHGVDDNV 179 (221)
Q Consensus 163 e~l~~~~~~~~~i~~~l 179 (221)
..+......+..+..-|
T Consensus 518 ~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 518 RELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33333333333333333
No 63
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.15 E-value=7.6 Score=32.43 Aligned_cols=58 Identities=12% Similarity=0.217 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHH
Q 027617 132 QSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAM 189 (221)
Q Consensus 132 ~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i 189 (221)
....-|.....++.....+|.+.-.+|..|.+.|.++.++++..+..+..+++-++.+
T Consensus 215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kL 272 (273)
T KOG3065|consen 215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKL 272 (273)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhc
Confidence 4556788888999999999999999999999999999999999999999998877654
No 64
>PHA03164 hypothetical protein; Provisional
Probab=80.01 E-value=2.5 Score=27.84 Aligned_cols=21 Identities=19% Similarity=0.513 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027617 197 KWIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 197 k~Il~~ii~il~i~i~~vl~~ 217 (221)
-+++.+.++.++++|++|+|.
T Consensus 60 FlvLtgLaIamILfiifvlyv 80 (88)
T PHA03164 60 FLVLTGLAIAMILFIIFVLYV 80 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 355555555566666666664
No 65
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=79.80 E-value=3 Score=27.29 Aligned_cols=22 Identities=36% Similarity=0.709 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027617 198 WIIGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~ 219 (221)
+++.++++++++++++++|.|.
T Consensus 50 ~~ii~ii~v~ii~~l~flYLK~ 71 (72)
T PF12575_consen 50 ILIISIIFVLIIVLLTFLYLKL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4555566666666667777764
No 66
>PF14937 DUF4500: Domain of unknown function (DUF4500)
Probab=79.71 E-value=2.5 Score=28.59 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027617 194 SRNKWIIGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 194 ~~dk~Il~~ii~il~i~i~~vl~~k~ 219 (221)
.-||+|+.++++.+.++++++.|.+.
T Consensus 34 kPNk~iM~~Gl~a~~~c~gYi~Ym~~ 59 (86)
T PF14937_consen 34 KPNKPIMAFGLIAITLCVGYIAYMHA 59 (86)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999999764
No 67
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=79.66 E-value=10 Score=25.65 Aligned_cols=54 Identities=19% Similarity=0.130 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhHh--hccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC
Q 027617 10 RQYCEISANLSKKCTAA--ASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQ 63 (221)
Q Consensus 10 ~e~~~~~~~i~~~l~~~--~~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~ 63 (221)
..|...++.+..+|..+ |..+.++.-.+..+.-..|..|+..|..-..++..+.
T Consensus 25 ~sFE~klerakeiLe~LndpeisL~eSvkLYkeG~~lL~eAqk~LE~AkLe~~eI~ 80 (86)
T PRK14065 25 KSFEEHVHSLEQAIDRLNDPNLSLKDGMDLYKTAMQELFLAQKLLENAYLEYEKLQ 80 (86)
T ss_pred ccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555556666666665 4455566666777777777777777776666665543
No 68
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=79.52 E-value=24 Score=26.54 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=25.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhHhhccC
Q 027617 1 MSDVFERYERQYCEISANLSKKCTAAASLD 30 (221)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~ 30 (221)
|.+++..|+.++..-+++|+..|..+.+.+
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t 52 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNST 52 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhh
Confidence 356889999999999999999999987543
No 69
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=79.05 E-value=33 Score=27.86 Aligned_cols=21 Identities=24% Similarity=0.204 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027617 71 LAKLREYKSDLNNLKSEVKRL 91 (221)
Q Consensus 71 ~~k~~~~r~~l~~l~~~~~~~ 91 (221)
..++...........+.++.+
T Consensus 63 ~~kL~~~e~~~de~er~~k~l 83 (237)
T PF00261_consen 63 TEKLEEAEKRADESERARKVL 83 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 70
>PHA02975 hypothetical protein; Provisional
Probab=78.68 E-value=4.6 Score=26.05 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 027617 198 WIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
+++.+++++++++++.++|.|..
T Consensus 46 ~~ii~i~~v~~~~~~~flYLK~~ 68 (69)
T PHA02975 46 ILIIFIIFITCIAVFTFLYLKLM 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455666677777788888864
No 71
>PRK11637 AmiB activator; Provisional
Probab=78.66 E-value=47 Score=29.47 Aligned_cols=82 Identities=10% Similarity=0.098 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhccCh--HHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHH
Q 027617 8 YERQYCEISANLSKKCTAAASLDG--ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLK 85 (221)
Q Consensus 8 ye~e~~~~~~~i~~~l~~~~~~~~--~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~ 85 (221)
..+++..+..++...-..+..... .+-...+..++..|..+...+...+.++..+... -..+..++...+.+++..+
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~e-i~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQ-IDELNASIAKLEQQQAAQE 123 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443332211 1122334444444555555555444444433221 1244445555555555555
Q ss_pred HHHHH
Q 027617 86 SEVKR 90 (221)
Q Consensus 86 ~~~~~ 90 (221)
..+..
T Consensus 124 ~~l~~ 128 (428)
T PRK11637 124 RLLAA 128 (428)
T ss_pred HHHHH
Confidence 54433
No 72
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.63 E-value=24 Score=25.44 Aligned_cols=39 Identities=13% Similarity=0.218 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhH
Q 027617 141 RRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNV 179 (221)
Q Consensus 141 ~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l 179 (221)
...+..|.++-.++..=++.-=+++-.-..++++++...
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~dra 66 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRA 66 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHH
Confidence 334444444444444444444444444444444444333
No 73
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=77.40 E-value=1 Score=40.62 Aligned_cols=22 Identities=9% Similarity=0.297 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHh
Q 027617 5 FERYERQYCEISANLSKKCTAA 26 (221)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~ 26 (221)
.+.|..-+..++.=+...+..+
T Consensus 50 l~~Y~~tl~~Ll~Pi~~~l~~~ 71 (490)
T PF00523_consen 50 LDEYNNTLTELLTPIQDNLNRI 71 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHH
Confidence 4455555555555555544444
No 74
>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family. HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.
Probab=76.55 E-value=12 Score=21.61 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHH
Q 027617 6 ERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLD 46 (221)
Q Consensus 6 ~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~ 46 (221)
++|..-|...+.++...|...+..++.-+..++..+...+.
T Consensus 1 ~~y~~Gy~~C~~Ev~~fL~~~~~~~~~~~~rLl~HL~~~~~ 41 (43)
T PF07527_consen 1 QKYRAGYSECLNEVSRFLSSVEGVDPGVRARLLSHLQSCLN 41 (43)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTS---THHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhc
Confidence 47888999999999999988887777666666666665544
No 75
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=75.87 E-value=3.4 Score=26.55 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027617 198 WIIGTVVAVLVIAIILILYFK 218 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k 218 (221)
+||.+|+++.+++|++-+|.|
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444445543
No 76
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=75.64 E-value=90 Score=31.12 Aligned_cols=85 Identities=24% Similarity=0.335 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhccCh--HHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHH
Q 027617 7 RYERQYCEISANLSKKCTAAASLDG--ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNL 84 (221)
Q Consensus 7 ~ye~e~~~~~~~i~~~l~~~~~~~~--~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l 84 (221)
.++.++..+.+.+..+=...+++.. +.+...+..+...+.+.+..+..+..|+.-..+. =......+..++.++.++
T Consensus 278 ~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~E-i~~~r~~~~~~~re~~~~ 356 (1074)
T KOG0250|consen 278 EVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEE-IEEARKDLDDLRREVNDL 356 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHHH
Confidence 4555555555555444333333321 2223333333333334333333333333322211 123334444444444444
Q ss_pred HHHHHHHH
Q 027617 85 KSEVKRLV 92 (221)
Q Consensus 85 ~~~~~~~~ 92 (221)
+.+++.+.
T Consensus 357 ~~~~~~~~ 364 (1074)
T KOG0250|consen 357 KEEIREIE 364 (1074)
T ss_pred HHHHHHHH
Confidence 44444443
No 77
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=75.52 E-value=4.1 Score=29.69 Aligned_cols=19 Identities=42% Similarity=0.385 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027617 198 WIIGTVVAVLVIAIILILY 216 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~ 216 (221)
+|++++++-++++|++++|
T Consensus 68 ~Ii~gv~aGvIg~Illi~y 86 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISY 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 78
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=75.23 E-value=26 Score=27.56 Aligned_cols=61 Identities=23% Similarity=0.463 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 32 ERKKQKVSEIQTGLDEAESLIRKMDLEARSL-----QPNVKAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 32 ~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~-----~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
..+...+..++..+.+++.-+..++.++... ++..|..+..++...+.++..++.++..+.
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYS 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777766665432 335688899999999999999998887543
No 79
>PHA02692 hypothetical protein; Provisional
Probab=74.78 E-value=5.6 Score=25.79 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027617 198 WIIGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~ 219 (221)
+|+.+++++.+++++.++|.|.
T Consensus 48 ~ii~~~~~~~~~vll~flYLK~ 69 (70)
T PHA02692 48 VFLIGLIAAAIGVLLCFHYLKL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444356666667777888875
No 80
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.01 E-value=1.1e+02 Score=31.47 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 027617 66 VKAVLLAKLREYKSDLNNLKSEVKRLVSG 94 (221)
Q Consensus 66 ~r~~~~~k~~~~r~~l~~l~~~~~~~~~~ 94 (221)
.+..|..++..+..++..+...+..+...
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~ 910 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQ 910 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666766666666666655433
No 81
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=73.73 E-value=10 Score=22.12 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHH
Q 027617 7 RYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDE 47 (221)
Q Consensus 7 ~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~ 47 (221)
+|..-|.....++...|+..+..+++.+..++..+...+++
T Consensus 2 ~y~~Gy~~C~~Ev~~fLs~~~~~~~~~~~~Ll~HL~~~~~~ 42 (45)
T smart00511 2 SFRSGYRECANEVSRFLSQLPGTDPDVRARLLSHLQTHLNQ 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHh
Confidence 67888999999999999988877777777777776655444
No 82
>PHA03049 IMV membrane protein; Provisional
Probab=73.56 E-value=4.3 Score=26.00 Aligned_cols=13 Identities=46% Similarity=0.692 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 027617 204 VAVLVIAIILILY 216 (221)
Q Consensus 204 i~il~i~i~~vl~ 216 (221)
+++|++++++++|
T Consensus 8 ~iICVaIi~lIvY 20 (68)
T PHA03049 8 VIICVVIIGLIVY 20 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 83
>PHA03054 IMV membrane protein; Provisional
Probab=73.50 E-value=6.8 Score=25.43 Aligned_cols=22 Identities=32% Similarity=0.816 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027617 198 WIIGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~ 219 (221)
+++.++++++++++++++|.|.
T Consensus 50 ~~ii~l~~v~~~~l~~flYLK~ 71 (72)
T PHA03054 50 WLIIIFFIVLILLLLIYLYLKV 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455666666677788774
No 84
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.24 E-value=41 Score=25.66 Aligned_cols=57 Identities=23% Similarity=0.454 Sum_probs=40.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 027617 36 QKVSEIQTGLDEAESLIRKMDLEARSL---QPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 94 (221)
Q Consensus 36 ~~~~~i~~~l~~~~~~l~~me~e~~~~---~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~~ 94 (221)
..+..+...+.+++.-++.++.|+..+ |+. ..+...+.++..++..+...+..+...
T Consensus 79 ~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~--~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 79 AEIKELREELAELKKEVKSLEAELASLSSEPTN--EELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 346677777777777777777777654 333 357777778888888888877777654
No 85
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=72.08 E-value=7.8 Score=29.84 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=23.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 38 VSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEV 88 (221)
Q Consensus 38 ~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~ 88 (221)
+.+++..++++-+----||.|+ .+|..+...++++|+++.+|+.++
T Consensus 2 LeD~EsklN~AIERnalLE~EL-----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL-----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777788888 457788888899999999998888
No 86
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=71.79 E-value=6.3 Score=25.35 Aligned_cols=18 Identities=33% Similarity=0.255 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027617 201 GTVVAVLVIAIILILYFK 218 (221)
Q Consensus 201 ~~ii~il~i~i~~vl~~k 218 (221)
++.+++|++++++++|--
T Consensus 5 ~iLi~ICVaii~lIlY~i 22 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGI 22 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 577888999998888854
No 87
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=71.74 E-value=5.8 Score=26.66 Aligned_cols=18 Identities=50% Similarity=0.824 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027617 200 IGTVVAVLVIAIILILYF 217 (221)
Q Consensus 200 l~~ii~il~i~i~~vl~~ 217 (221)
+..|+++++|+|++|+++
T Consensus 27 lMtILivLVIIiLlImlf 44 (85)
T PF10717_consen 27 LMTILIVLVIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555555554
No 88
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=71.60 E-value=23 Score=22.54 Aligned_cols=53 Identities=19% Similarity=0.336 Sum_probs=34.5
Q ss_pred HHHHhhHHHHHHHHHHHHHH------hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 39 SEIQTGLDEAESLIRKMDLE------ARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91 (221)
Q Consensus 39 ~~i~~~l~~~~~~l~~me~e------~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~ 91 (221)
..++..+..++..+..++.- +...|+........++..+...+..+...+..+
T Consensus 7 ~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 7 ERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444454444444433 334788888889999999999999988877654
No 89
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=71.45 E-value=35 Score=26.06 Aligned_cols=55 Identities=18% Similarity=0.408 Sum_probs=27.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 027617 37 KVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKL--REYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 37 ~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~--~~~r~~l~~l~~~~~~~~ 92 (221)
-+..++..+.++..-+..+..++..+....+ .+.... .+.+..+..++.+...+.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~-~L~~~~t~~el~~~i~~l~~e~~~l~ 129 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELA-SLSSEPTNEELREEIEELEEEIEELE 129 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3555555666666666666655554433221 222222 344555555555555554
No 90
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.41 E-value=59 Score=27.07 Aligned_cols=70 Identities=23% Similarity=0.356 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhHhhhc
Q 027617 34 KKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLES 107 (221)
Q Consensus 34 ~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~ 107 (221)
....+.+++.....++.-++.|...+..+.. .......++.+.+.+++.++.++..+...+ .+|.++|+.
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~-k~~~~~~~i~~~~~eik~l~~eI~~~~~~I---~~r~~~l~~ 105 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQS-KIDELQKEIDQSKAEIKKLQKEIAELKENI---VERQELLKK 105 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 4455666666666666666666666664432 245677777777788888888777776654 577788754
No 91
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=71.39 E-value=1.5 Score=25.25 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 027617 202 TVVAVLVIAIILILYF 217 (221)
Q Consensus 202 ~ii~il~i~i~~vl~~ 217 (221)
++|+++++++++++|.
T Consensus 22 ~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 22 GVIIIVLGAFLFFWYR 37 (40)
T ss_pred HHHHHHHHHHhheEEe
Confidence 4444455444444443
No 92
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=70.36 E-value=27 Score=22.77 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhccChHHHHHHHHHHHhh-----HHHHHHHHHHHHHHhhcCCh
Q 027617 3 DVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTG-----LDEAESLIRKMDLEARSLQP 64 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~-----l~~~~~~l~~me~e~~~~~~ 64 (221)
++++.|..+....+.++...+..+...+.+.-...++.+... +..+......++..++..+.
T Consensus 1 ell~~f~~~~~~~~~~l~~~~~~~~~~d~~~l~~~~H~lkG~a~~~g~~~l~~~~~~lE~~~~~~~~ 67 (90)
T PF01627_consen 1 ELLDIFLEEAPEDLEQLEQALQALEQEDWEELRRLAHRLKGSAGNLGAPRLAELAEQLEQALKSGDK 67 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSHHCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhHHhcCHHHHHHHHHHHHHHHHcCCc
Confidence 578888999999999998888554444455556666666643 55777888888888876543
No 93
>PRK10780 periplasmic chaperone; Provisional
Probab=70.32 E-value=46 Score=25.37 Aligned_cols=22 Identities=14% Similarity=0.227 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHh
Q 027617 5 FERYERQYCEISANLSKKCTAA 26 (221)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~ 26 (221)
|..+..++.....+++.....+
T Consensus 52 ~~~~q~el~~~~~elq~~~~~~ 73 (165)
T PRK10780 52 FKGRASELQRMETDLQAKMQKL 73 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333433333333
No 94
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=70.19 E-value=24 Score=22.19 Aligned_cols=55 Identities=15% Similarity=0.096 Sum_probs=25.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHH
Q 027617 127 TERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSK 181 (221)
Q Consensus 127 ~~~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~ 181 (221)
.+.+.+....++.+..++.++..-=..=.+.|..=+.++..+...+......+..
T Consensus 7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~ 61 (66)
T PF12352_consen 7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKR 61 (66)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344444444444444444444333333444455555555555555554444443
No 95
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=69.38 E-value=96 Score=28.74 Aligned_cols=55 Identities=24% Similarity=0.364 Sum_probs=25.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 36 QKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91 (221)
Q Consensus 36 ~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~ 91 (221)
..+.++...|.+++.-...+...+.+++.... ..+.++..++..+...++.+.+.
T Consensus 379 ~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~-~Ar~~l~~~~~~l~~ikR~lek~ 433 (560)
T PF06160_consen 379 EELEEIEEQLEEIEEEQEEINESLQSLRKDEK-EAREKLQKLKQKLREIKRRLEKS 433 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444444444444444444444433321 34444555555555555555443
No 96
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=68.57 E-value=62 Score=26.24 Aligned_cols=52 Identities=12% Similarity=0.215 Sum_probs=31.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhH
Q 027617 128 ERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNV 179 (221)
Q Consensus 128 ~~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l 179 (221)
+.+.....+...+.+.+...+..-..+-..|...++....+...++.+-+.|
T Consensus 183 ~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 183 EKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555556666666666666666666666666666666666666554443
No 97
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=67.36 E-value=74 Score=26.68 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 027617 198 WIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
+.-++++++|+++=++.+++|++
T Consensus 263 ~~~~~i~llfi~iel~Pv~~Kl~ 285 (301)
T PF14362_consen 263 LASLFIFLLFIAIELLPVLFKLL 285 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456666666666677777764
No 98
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=67.19 E-value=25 Score=24.66 Aligned_cols=38 Identities=11% Similarity=0.212 Sum_probs=28.2
Q ss_pred HHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHH
Q 027617 156 QDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRM 193 (221)
Q Consensus 156 ~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~ 193 (221)
+....|.|+|..-..+.......|......|..|+.|.
T Consensus 60 e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 60 EKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777777777777778888888888888774
No 99
>PRK09759 small toxic polypeptide; Provisional
Probab=66.89 E-value=3.3 Score=25.13 Aligned_cols=22 Identities=5% Similarity=0.239 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027617 196 NKWIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 196 dk~Il~~ii~il~i~i~~vl~~ 217 (221)
+|.+++.++++|+.+++|++..
T Consensus 3 ~k~~l~~liivCiTvL~f~~l~ 24 (50)
T PRK09759 3 QKYRLLSLIVICFTLLFFTWMI 24 (50)
T ss_pred ceeeHHHHHHHHHHHHHHHHHh
Confidence 4667778888888777776653
No 100
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=66.68 E-value=24 Score=23.09 Aligned_cols=49 Identities=22% Similarity=0.357 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 43 TGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91 (221)
Q Consensus 43 ~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~ 91 (221)
..+.+++..+++.+..+..+.-..+..=...-..|...+..++.++..+
T Consensus 25 ~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~l 73 (79)
T PF05008_consen 25 SLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433222111122234444444444444443
No 101
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=66.51 E-value=40 Score=23.21 Aligned_cols=88 Identities=14% Similarity=0.151 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccC-----hHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChh-HH-HHHHHHHHH
Q 027617 4 VFERYERQYCEISANLSKKCTAAASLD-----GERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPN-VK-AVLLAKLRE 76 (221)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~~~~~-----~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~-~r-~~~~~k~~~ 76 (221)
.|-...+|....+..+...+.+..... ..+...+-.++...|+.++..+..|+.-+.-+..+ .+ .--...+.+
T Consensus 2 PF~~v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~ 81 (97)
T PF09177_consen 2 PFFVVKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISR 81 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHH
Confidence 466777788888888877777763322 23455666777788888888888887776643211 11 122455677
Q ss_pred HHHHHHHHHHHHHHH
Q 027617 77 YKSDLNNLKSEVKRL 91 (221)
Q Consensus 77 ~r~~l~~l~~~~~~~ 91 (221)
.+.-+..++.++..+
T Consensus 82 Rr~fv~~~~~~i~~~ 96 (97)
T PF09177_consen 82 RRQFVSAIRNQIKQM 96 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 777777777766554
No 102
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=66.22 E-value=12 Score=21.29 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 027617 201 GTVVAVLVIAIILILY 216 (221)
Q Consensus 201 ~~ii~il~i~i~~vl~ 216 (221)
.++++.+.++++.++|
T Consensus 10 v~V~vg~~iiii~~~~ 25 (38)
T PF02439_consen 10 VAVVVGMAIIIICMFY 25 (38)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444444
No 103
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.17 E-value=72 Score=26.08 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=15.7
Q ss_pred HhhHhHHHHhcchhchhhhHHHHHH
Q 027617 160 SQRQSLLHAHNTLHGVDDNVSKSKK 184 (221)
Q Consensus 160 ~Qre~l~~~~~~~~~i~~~l~~s~~ 184 (221)
..-.-+.++..+++.....+...++
T Consensus 184 dl~~e~d~t~srl~~~~~~l~~v~~ 208 (235)
T KOG3202|consen 184 DLDNEMDRTESRLDRVMKRLAKVNR 208 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777766666666665
No 104
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=65.39 E-value=36 Score=24.76 Aligned_cols=85 Identities=16% Similarity=0.294 Sum_probs=58.7
Q ss_pred HhhhHHHHHhhHHHHHHHHHHHHHHHHHH-------HHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHH
Q 027617 123 LMMSTERVNQSTDRIKDSRRTMLETEELG-------VSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSR 195 (221)
Q Consensus 123 ~~~~~~~l~~~~~~L~~s~~~~~ete~~g-------~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~ 195 (221)
++.+++.+++-++.|+....-+.+...+| .+++.--.+|...|..+..+++.+.+.+..--.-++.|-.-.++
T Consensus 40 ilknq~lln~is~kldging~l~dliaqgnln~el~ke~lkianeqn~~ln~vn~~l~~in~~l~~ylpkitsmls~vmk 119 (177)
T PF12495_consen 40 ILKNQQLLNQISDKLDGINGSLNDLIAQGNLNSELSKEILKIANEQNQMLNNVNNQLNSINSMLNTYLPKITSMLSDVMK 119 (177)
T ss_pred HHHhHHHHHHhcccccccCCcHHHHHHcCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45555666666666655555555554444 45566667899999999999999988887777777778777777
Q ss_pred HHHHHHHHHHHH
Q 027617 196 NKWIIGTVVAVL 207 (221)
Q Consensus 196 dk~Il~~ii~il 207 (221)
....+.+-|-++
T Consensus 120 qny~lslqie~l 131 (177)
T PF12495_consen 120 QNYVLSLQIEFL 131 (177)
T ss_pred hhhhhhhhHHHH
Confidence 777666554443
No 105
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=65.36 E-value=17 Score=25.02 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027617 184 KVLTAMSRRMSRNKWII 200 (221)
Q Consensus 184 ~~l~~i~rr~~~dk~Il 200 (221)
+++++..||..-.-+++
T Consensus 3 ~i~kK~K~k~~l~~~~i 19 (96)
T PF13800_consen 3 KILKKAKRKSRLRTVVI 19 (96)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45566666654443333
No 106
>PRK10404 hypothetical protein; Provisional
Probab=65.34 E-value=45 Score=23.41 Aligned_cols=54 Identities=13% Similarity=0.086 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 027617 34 KKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSE 87 (221)
Q Consensus 34 ~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~ 87 (221)
+..+..++...++.+++++..-..+...--...|......+..-+..+......
T Consensus 7 ~~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~ 60 (101)
T PRK10404 7 DTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDS 60 (101)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344445555555555555444332222111223444444455555444444443
No 107
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=65.03 E-value=2e+02 Score=30.75 Aligned_cols=68 Identities=10% Similarity=0.114 Sum_probs=52.9
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHH
Q 027617 126 STERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRM 193 (221)
Q Consensus 126 ~~~~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~ 193 (221)
..+.+....-.+++....+............-|..||.-+.++...+..+...+..++.-+..+.+..
T Consensus 396 ~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~ 463 (1822)
T KOG4674|consen 396 LQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKEL 463 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556677777777777777777788899999999999999999999999988888877664
No 108
>PF15106 TMEM156: TMEM156 protein family
Probab=64.76 E-value=9 Score=30.50 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 027617 196 NKWIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 196 dk~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
=|+.-|+.+++++++.++++.+|++
T Consensus 174 mKITWYvLVllVfiflii~iI~KIl 198 (226)
T PF15106_consen 174 MKITWYVLVLLVFIFLIILIIYKIL 198 (226)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666666666666667764
No 109
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=64.66 E-value=9.9 Score=25.55 Aligned_cols=19 Identities=11% Similarity=0.501 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027617 199 IIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 199 Il~~ii~il~i~i~~vl~~ 217 (221)
|+.++++++.+++.+|+|.
T Consensus 6 i~~iialiv~~iiaIvvW~ 24 (81)
T PF00558_consen 6 ILAIIALIVALIIAIVVWT 24 (81)
T ss_dssp --HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444443
No 110
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=63.89 E-value=1.2e+02 Score=28.03 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHH--HHHHHHHHHHHHHHH
Q 027617 134 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSK--SKKVLTAMSRRMSRN 196 (221)
Q Consensus 134 ~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~--s~~~l~~i~rr~~~d 196 (221)
...+..-...+.+.=++=..+-..+=.|=+-|.....+|..=+-.++. ...-+..|..+....
T Consensus 204 ~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~ 268 (569)
T PRK04778 204 EEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDEN 268 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHH
Confidence 333333334444443344444445556666666666666655555553 456666666655443
No 111
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=63.39 E-value=24 Score=20.92 Aligned_cols=13 Identities=0% Similarity=0.097 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 027617 199 IIGTVVAVLVIAI 211 (221)
Q Consensus 199 Il~~ii~il~i~i 211 (221)
.+.+++++|+++.
T Consensus 10 ~~~F~~lIC~Fl~ 22 (54)
T PF06716_consen 10 LLAFGFLICLFLF 22 (54)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 112
>PHA02902 putative IMV membrane protein; Provisional
Probab=63.10 E-value=15 Score=23.35 Aligned_cols=24 Identities=17% Similarity=0.438 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 027617 196 NKWIIGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 196 dk~Il~~ii~il~i~i~~vl~~k~ 219 (221)
|.+++..++++.++.+++..|.+.
T Consensus 4 dtfvi~~v~v~Ivclliya~YrR~ 27 (70)
T PHA02902 4 DTFVILAVIVIIFCLLIYAAYKRY 27 (70)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555556666654
No 113
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=62.78 E-value=85 Score=25.75 Aligned_cols=83 Identities=12% Similarity=0.161 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhHhh--ccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHHHHHHH
Q 027617 11 QYCEISANLSKKCTAAA--SLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQ-PNVKAVLLAKLREYKSDLNNLKSE 87 (221)
Q Consensus 11 e~~~~~~~i~~~l~~~~--~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~-~~~r~~~~~k~~~~r~~l~~l~~~ 87 (221)
.|...++.|. .++.+. +.+.++....+.+++..|+.++...+++...+.... ..+--+...++.+.+.+++.++.+
T Consensus 106 ~~~~~l~~l~-~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~ 184 (262)
T PF14257_consen 106 KFDSFLDELS-ELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQ 184 (262)
T ss_pred HHHHHHHHHh-ccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555 334442 334455666777888888888888888776665443 445667889999999999999999
Q ss_pred HHHHHcc
Q 027617 88 VKRLVSG 94 (221)
Q Consensus 88 ~~~~~~~ 94 (221)
++.+...
T Consensus 185 ~~~l~~~ 191 (262)
T PF14257_consen 185 LKYLDDR 191 (262)
T ss_pred HHHHHHh
Confidence 9888744
No 114
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=62.64 E-value=1.9e+02 Score=29.61 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=9.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHH
Q 027617 36 QKVSEIQTGLDEAESLIRKMD 56 (221)
Q Consensus 36 ~~~~~i~~~l~~~~~~l~~me 56 (221)
+....++....++++++.++.
T Consensus 1461 as~~q~~~s~~el~~Li~~v~ 1481 (1758)
T KOG0994|consen 1461 ASRSQMEESNRELRNLIQQVR 1481 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555554443
No 115
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=62.54 E-value=36 Score=21.34 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 183 KKVLTAMSRRMSRNKWIIGTVVAV 206 (221)
Q Consensus 183 ~~~l~~i~rr~~~dk~Il~~ii~i 206 (221)
..+++.=.+|...-.++++++.++
T Consensus 30 ~eil~ker~R~r~~~~~~~li~aL 53 (64)
T COG4068 30 GEILNKERKRQRNFMILMFLILAL 53 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555554
No 116
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=62.44 E-value=1.5e+02 Score=28.49 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 027617 68 AVLLAKLREYKSDLNNLKSEVKRLVSGN 95 (221)
Q Consensus 68 ~~~~~k~~~~r~~l~~l~~~~~~~~~~~ 95 (221)
..+...++.++..+..++..+++++.+.
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~~lk~k~ 662 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIEQLKKKL 662 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677778888888888888887776543
No 117
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=62.42 E-value=18 Score=24.84 Aligned_cols=30 Identities=17% Similarity=0.441 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 188 AMSRRMSRNKWIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 188 ~i~rr~~~dk~Il~~ii~il~i~i~~vl~~ 217 (221)
.+.||.....++-..++.++++++++++++
T Consensus 3 ~i~kK~K~k~~l~~~~isi~~~lvi~~i~~ 32 (96)
T PF13800_consen 3 KILKKAKRKSRLRTVVISIISALVIFIISF 32 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 455555555555555666665555555443
No 118
>PRK10132 hypothetical protein; Provisional
Probab=62.35 E-value=54 Score=23.32 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=30.1
Q ss_pred hHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 164 SLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 164 ~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl~~ 217 (221)
.|..+++++.+.......++.....-..-+..+-|--.+|.+.+.+++++++..
T Consensus 53 ~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~svgiaagvG~llG~Ll~R 106 (108)
T PRK10132 53 LLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSVGTAAAVGIFIGALLSL 106 (108)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhc
Confidence 344445555544443334444444444445556677777777777777766553
No 119
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=61.88 E-value=1.2e+02 Score=29.42 Aligned_cols=21 Identities=10% Similarity=0.181 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 027617 5 FERYERQYCEISANLSKKCTA 25 (221)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~ 25 (221)
......++..+++++...-..
T Consensus 506 ~~~~~~~~~~li~~L~~~~~~ 526 (771)
T TIGR01069 506 YGEFKEEINVLIEKLSALEKE 526 (771)
T ss_pred HHhhHHHHHHHHHHHHHHHHH
Confidence 344445555555555544333
No 120
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=61.77 E-value=8.4 Score=32.62 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 027617 3 DVFERYERQYCEISANLSKKCT 24 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~ 24 (221)
+.|++|++-...--++-.+.++
T Consensus 50 QRF~EYdErm~~kRqkcKEqcD 71 (299)
T PF02009_consen 50 QRFEEYDERMQEKRQKCKEQCD 71 (299)
T ss_pred HHHHHHHhhhhhhHHHHHHHhc
Confidence 4555666555444444444333
No 121
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=61.48 E-value=1.8e+02 Score=29.13 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=14.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhcC
Q 027617 37 KVSEIQTGLDEAESLIRKMDLEARSL 62 (221)
Q Consensus 37 ~~~~i~~~l~~~~~~l~~me~e~~~~ 62 (221)
.+.+++..++++..-.+.++.|+..+
T Consensus 317 k~teiea~i~~~~~e~~~~d~Ei~~~ 342 (1074)
T KOG0250|consen 317 KLTEIEAKIGELKDEVDAQDEEIEEA 342 (1074)
T ss_pred hhhHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34555555555555555555555543
No 122
>PF15018 InaF-motif: TRP-interacting helix
Probab=61.47 E-value=15 Score=20.89 Aligned_cols=20 Identities=25% Similarity=0.482 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 027617 201 GTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 201 ~~ii~il~i~i~~vl~~k~~ 220 (221)
.=++.+.+.++.+.+||-|+
T Consensus 12 ~Yl~~VSl~Ai~LsiYY~f~ 31 (38)
T PF15018_consen 12 AYLFSVSLAAIVLSIYYIFF 31 (38)
T ss_pred HHHHHHHHHHHHHHHHHhee
Confidence 33455666777788888765
No 123
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=61.37 E-value=27 Score=24.66 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=7.7
Q ss_pred hhccChHHHHHHHHHH
Q 027617 26 AASLDGERKKQKVSEI 41 (221)
Q Consensus 26 ~~~~~~~~~~~~~~~i 41 (221)
+++++|++..++.+++
T Consensus 87 le~l~~eE~~~L~~ei 102 (104)
T PF11460_consen 87 LEELSPEELEALQAEI 102 (104)
T ss_pred HHhCCHHHHHHHHHHh
Confidence 3444455555544444
No 124
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=60.93 E-value=20 Score=23.62 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 027617 198 WIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
..+.+.|++|+++++.+.|+.|.
T Consensus 52 ~l~l~ail~lL~a~Ya~fyl~ls 74 (79)
T PF15168_consen 52 ALVLAAILVLLLAFYAFFYLNLS 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455566666677777777664
No 125
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=60.57 E-value=1.1e+02 Score=26.35 Aligned_cols=85 Identities=8% Similarity=0.144 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHH
Q 027617 3 DVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLN 82 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~ 82 (221)
+-|++.++||+.+.+.-..-..+++....-+ ....+.+...-.+++ .+...+..++++...+-.+.+++.+.++.
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ-~~C~ssI~~QkkrLk----~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik 78 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQ-DKCSSSISHQKKRLK----ELKKSLKRCKKSLSAEERELIEKLEEDIK 78 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH----HHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence 3467777777777666555544444322111 122223333333333 33333333333222234444555555555
Q ss_pred HHHHHHHHHH
Q 027617 83 NLKSEVKRLV 92 (221)
Q Consensus 83 ~l~~~~~~~~ 92 (221)
..+..+..++
T Consensus 79 ~r~~~l~DmE 88 (330)
T PF07851_consen 79 ERRCQLFDME 88 (330)
T ss_pred HHHhhHHHHH
Confidence 5555554443
No 126
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=60.38 E-value=28 Score=23.86 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=10.3
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHH
Q 027617 190 SRRMSRN-KWIIGTVVAVLVIAIIL 213 (221)
Q Consensus 190 ~rr~~~d-k~Il~~ii~il~i~i~~ 213 (221)
.+..... +++++++++++++++++
T Consensus 6 ~~~~~~~~~l~i~l~~~v~~~a~~~ 30 (97)
T PF04999_consen 6 IRDIKRQKKLIILLVIVVLISALGV 30 (97)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3344344 44444444444444433
No 127
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=60.15 E-value=47 Score=21.95 Aligned_cols=48 Identities=10% Similarity=0.225 Sum_probs=35.2
Q ss_pred HHhhHHHHHHHHHHHHHHhhcCChh-HHHHHHHHHHHHHHHHHHHHHHH
Q 027617 41 IQTGLDEAESLIRKMDLEARSLQPN-VKAVLLAKLREYKSDLNNLKSEV 88 (221)
Q Consensus 41 i~~~l~~~~~~l~~me~e~~~~~~~-~r~~~~~k~~~~r~~l~~l~~~~ 88 (221)
.+..|.-.++.++.|--.++..|.+ .+..|..++.+|....+.|+...
T Consensus 22 ~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 22 AEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQN 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555666666666667777754 47789999999999999888764
No 128
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.91 E-value=1.5e+02 Score=27.53 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 69 VLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 69 ~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
.|..++...+.++..-..+...++
T Consensus 291 ~~~~~l~~l~~Eie~kEeE~e~lq 314 (581)
T KOG0995|consen 291 HMEKKLEMLKSEIEEKEEEIEKLQ 314 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455544444444444443
No 129
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=59.83 E-value=23 Score=18.19 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027617 69 VLLAKLREYKSDLNNLKSEVKR 90 (221)
Q Consensus 69 ~~~~k~~~~r~~l~~l~~~~~~ 90 (221)
.|..++..|..+|..+++....
T Consensus 2 ~Yqakla~YqaeLa~vqk~na~ 23 (25)
T PF06696_consen 2 DYQAKLAQYQAELARVQKANAD 23 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhhc
Confidence 5778888888888888876643
No 130
>PHA03049 IMV membrane protein; Provisional
Probab=59.74 E-value=15 Score=23.62 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027617 198 WIIGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~ 219 (221)
+++.+|+++.+++|++-+|-|-
T Consensus 5 ~~l~iICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 6778888888888889998763
No 131
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=59.45 E-value=15 Score=27.67 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHhc
Q 027617 204 VAVLVIAIILILYFKLA 220 (221)
Q Consensus 204 i~il~i~i~~vl~~k~~ 220 (221)
+++++++.++++..++|
T Consensus 128 ~ll~i~~giy~~~r~~~ 144 (145)
T PF10661_consen 128 ILLAICGGIYVVLRKVW 144 (145)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33444444455555554
No 132
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=59.44 E-value=13 Score=29.65 Aligned_cols=20 Identities=15% Similarity=0.449 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027617 198 WIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~ 217 (221)
+++|+||+.++++|+.++|.
T Consensus 130 mLIClIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 130 MLICLIIIAVLFLICTLLFL 149 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555553
No 133
>PRK09738 small toxic polypeptide; Provisional
Probab=59.44 E-value=5.2 Score=24.50 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027617 196 NKWIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 196 dk~Il~~ii~il~i~i~~vl~~ 217 (221)
+|.+++.++++|+.+++|.+..
T Consensus 5 ~~~~~~~livvCiTvL~f~~l~ 26 (52)
T PRK09738 5 RSPLVWCVLIVCLTLLIFTYLT 26 (52)
T ss_pred cceehhhHHHHHHHHHHHHHHc
Confidence 4566777777777777766653
No 134
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=58.43 E-value=33 Score=19.63 Aligned_cols=25 Identities=28% Similarity=0.155 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 188 AMSRRMSRNKWIIGTVVAVLVIAII 212 (221)
Q Consensus 188 ~i~rr~~~dk~Il~~ii~il~i~i~ 212 (221)
.|+||..-|.+....+.+....+++
T Consensus 5 dm~RR~lmN~ll~Gava~~a~~~ly 29 (39)
T PF08802_consen 5 DMSRRQLMNLLLGGAVAVPAGGMLY 29 (39)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHhhHHHHHHHHhh
Confidence 6899999997665555554444433
No 135
>PRK10132 hypothetical protein; Provisional
Probab=58.00 E-value=65 Score=22.89 Aligned_cols=13 Identities=23% Similarity=0.345 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 027617 70 LLAKLREYKSDLN 82 (221)
Q Consensus 70 ~~~k~~~~r~~l~ 82 (221)
+...+..-+..+.
T Consensus 50 ~~~~L~~ar~~l~ 62 (108)
T PRK10132 50 AQALLKETRARMH 62 (108)
T ss_pred HHHHHHHHHHHHh
Confidence 3333333333333
No 136
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=56.68 E-value=5.1 Score=33.39 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027617 198 WIIGTVVAVLVIAIILILYFK 218 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k 218 (221)
+|+++++++++++|++|+|..
T Consensus 280 iil~IG~vl~i~~Ig~~ifK~ 300 (305)
T PF04639_consen 280 IILIIGGVLLIVFIGYFIFKR 300 (305)
T ss_pred HHHHHHHHHHHHHhhheeeEe
Confidence 455555555666655555543
No 137
>PTZ00046 rifin; Provisional
Probab=56.56 E-value=12 Score=32.44 Aligned_cols=23 Identities=30% Similarity=0.683 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 027617 198 WIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
-|.+.+|++++|++++||.|.+.
T Consensus 316 aIiaSiiAIvVIVLIMvIIYLIL 338 (358)
T PTZ00046 316 AIIASIVAIVVIVLIMVIIYLIL 338 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544445444443
No 138
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.48 E-value=52 Score=26.13 Aligned_cols=23 Identities=30% Similarity=0.636 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 027617 198 WIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
|-++.+++++++.|+=|+..|||
T Consensus 178 ~Sl~e~~~vv~iSi~Qv~ilk~f 200 (209)
T KOG1693|consen 178 WSLLEIIAVVVISIAQVFILKFF 200 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555543
No 139
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=56.31 E-value=15 Score=26.01 Aligned_cols=21 Identities=10% Similarity=-0.167 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027617 198 WIIGTVVAVLVIAIILILYFK 218 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k 218 (221)
.++|+.+.+++++++++++||
T Consensus 61 ~~~f~~~~~~~v~~~~~~~y~ 81 (105)
T PF10183_consen 61 LPFFFGFSGSLVFGGVFLAYK 81 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 566776777777767777765
No 140
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=56.30 E-value=30 Score=18.99 Aligned_cols=12 Identities=0% Similarity=0.263 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 027617 206 VLVIAIILILYF 217 (221)
Q Consensus 206 il~i~i~~vl~~ 217 (221)
++++++.+.+|+
T Consensus 17 ~~ILvFWfgvf~ 28 (34)
T PF08113_consen 17 AFILVFWFGVFA 28 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333334443
No 141
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=55.95 E-value=52 Score=21.07 Aligned_cols=63 Identities=21% Similarity=0.361 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 30 DGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQ----PNVKAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 30 ~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~----~~~r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
+|+.-......+.....+++..+..|...+..++ ......+.....++...+..+...|..+.
T Consensus 5 d~~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~~~ 71 (86)
T PF06013_consen 5 DPEQLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEALEELS 71 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555666666666655555442 23344566666666665665555554443
No 142
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=55.69 E-value=1.4e+02 Score=27.71 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Q 027617 32 ERKKQKVSEIQTGLDEAESLIRKMD 56 (221)
Q Consensus 32 ~~~~~~~~~i~~~l~~~~~~l~~me 56 (221)
..|+..+.+++.....+.++..+|+
T Consensus 131 a~r~~vl~~a~~l~~~in~~~~~L~ 155 (552)
T COG1256 131 AARQAVLSKAQTLVNQINNTYEQLT 155 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666655555553
No 143
>PRK11820 hypothetical protein; Provisional
Probab=55.66 E-value=1.3e+02 Score=25.45 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 027617 14 EISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREY 77 (221)
Q Consensus 14 ~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~ 77 (221)
.+..-+...|..+...-..+=..+...+...++.++.++..++......+...+..+..+++++
T Consensus 130 ~l~~al~~AL~~l~~~R~~EG~~L~~dl~~rl~~i~~~~~~i~~~~p~~~~~~~~rL~~rl~el 193 (288)
T PRK11820 130 ALLAALDEALDDLIEMREREGAALKADLLQRLDAIEALVAKIEALAPEILEEYRERLRERLEEL 193 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 3444444445554433333334566677777777777777776655555555566666666655
No 144
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=55.47 E-value=15 Score=27.69 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027617 198 WIIGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~ 219 (221)
.+++++|+..+++|++++|+.+
T Consensus 119 ~~i~~~i~g~ll~i~~giy~~~ 140 (145)
T PF10661_consen 119 PTILLSIGGILLAICGGIYVVL 140 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667778888888888765
No 145
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=55.41 E-value=16 Score=30.62 Aligned_cols=17 Identities=18% Similarity=0.565 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027617 202 TVVAVLVIAIILILYFK 218 (221)
Q Consensus 202 ~ii~il~i~i~~vl~~k 218 (221)
++|+.++++|++||.||
T Consensus 268 llil~vvliiLYiWlyr 284 (295)
T TIGR01478 268 LIILTVVLIILYIWLYR 284 (295)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444445555554
No 146
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=55.36 E-value=19 Score=24.25 Aligned_cols=11 Identities=18% Similarity=0.395 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 027617 197 KWIIGTVVAVL 207 (221)
Q Consensus 197 k~Il~~ii~il 207 (221)
|+++.++++++
T Consensus 5 kii~iii~li~ 15 (85)
T PF11337_consen 5 KIILIIIILIV 15 (85)
T ss_pred HHHHHHHHHHH
Confidence 34444333333
No 147
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=55.35 E-value=81 Score=23.13 Aligned_cols=82 Identities=18% Similarity=0.283 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhccChHHHH---HHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 027617 3 DVFERYERQYCEISANLSKKCTAAASLDGERKK---QKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKS 79 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~---~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~ 79 (221)
+++=-....+...+..+...|+++...=...|+ ..+..+...|++..++.+++..++. .....+.+.+.
T Consensus 32 D~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~--------~v~~dv~~i~~ 103 (126)
T PF07889_consen 32 DLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVT--------EVREDVSQIGD 103 (126)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--------HHHhhHHHHHH
Confidence 333345666777777777777776432222222 3455666777777777777766664 45555666666
Q ss_pred HHHHHHHHHHHHH
Q 027617 80 DLNNLKSEVKRLV 92 (221)
Q Consensus 80 ~l~~l~~~~~~~~ 92 (221)
+++.+...+..+.
T Consensus 104 dv~~v~~~V~~Le 116 (126)
T PF07889_consen 104 DVDSVQQMVEGLE 116 (126)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655554
No 148
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=55.16 E-value=13 Score=32.12 Aligned_cols=23 Identities=26% Similarity=0.686 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 027617 198 WIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
-|.+.+|++++|++++||.|-+.
T Consensus 311 ~IiaSiIAIvvIVLIMvIIYLIL 333 (353)
T TIGR01477 311 PIIASIIAILIIVLIMVIIYLIL 333 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444343
No 149
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=55.15 E-value=1.3e+02 Score=25.43 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 027617 13 CEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREY 77 (221)
Q Consensus 13 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~ 77 (221)
..+..-+...|..+...-..+=..+...+...++.++..+..++......+...+..+..+++.+
T Consensus 131 ~~l~~al~~AL~~l~~mR~~EG~~L~~dl~~rl~~i~~~v~~i~~~~p~~~~~~~~rL~~rl~el 195 (291)
T TIGR00255 131 ALILGALEEALLDFINMREFEGENLKSDIVQRLDLIEREVKKVRSAMPDILQWQRERLKARIEDL 195 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 34455555555555444333444566677777777777777776655555555566666666665
No 150
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=55.06 E-value=1.5e+02 Score=26.22 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027617 70 LLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 70 ~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
+...+.+.+.....|..++.+++
T Consensus 217 ~~~el~eik~~~~~L~~~~e~Lk 239 (395)
T PF10267_consen 217 ILEELREIKESQSRLEESIEKLK 239 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 151
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=54.96 E-value=98 Score=24.00 Aligned_cols=59 Identities=10% Similarity=0.266 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 32 ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKR 90 (221)
Q Consensus 32 ~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~ 90 (221)
++-+.-+.++.......+.-+..+..-.+.+.|.++.....-...|-.++...++-|+.
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf~e 177 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMFRE 177 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555544445555554433333333333333344444443
No 152
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=54.71 E-value=2.5e+02 Score=28.58 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=11.9
Q ss_pred HhHHhhHhHHHHhcchhchhhhHHHHHHHH
Q 027617 157 DLSSQRQSLLHAHNTLHGVDDNVSKSKKVL 186 (221)
Q Consensus 157 ~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l 186 (221)
.|..|.+.+.....+-..+.+.+.......
T Consensus 273 ~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~ 302 (1109)
T PRK10929 273 ALNQQAQRMDLIASQQRQAASQTLQVRQAL 302 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333333333333333333
No 153
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=54.61 E-value=46 Score=20.12 Aligned_cols=46 Identities=9% Similarity=0.051 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhHhh--ccChHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 027617 14 EISANLSKKCTAAA--SLDGERKKQKVSEIQTGLDEAESLIRKMDLEA 59 (221)
Q Consensus 14 ~~~~~i~~~l~~~~--~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~ 59 (221)
..+..+...+.++. ..+.++.-..+.+....++.++..++..+..+
T Consensus 3 e~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L~~~e~~i 50 (53)
T PF02609_consen 3 EAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQERLEEAEQKI 50 (53)
T ss_dssp HHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566664 33445666666666666666666666655443
No 154
>PTZ00370 STEVOR; Provisional
Probab=53.77 E-value=17 Score=30.44 Aligned_cols=16 Identities=19% Similarity=0.602 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 027617 203 VVAVLVIAIILILYFK 218 (221)
Q Consensus 203 ii~il~i~i~~vl~~k 218 (221)
+|+.++++|++||.||
T Consensus 265 lil~vvliilYiwlyr 280 (296)
T PTZ00370 265 LILAVVLIILYIWLYR 280 (296)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444555554
No 155
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=53.60 E-value=35 Score=19.14 Aligned_cols=14 Identities=29% Similarity=0.562 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 027617 197 KWIIGTVVAVLVIA 210 (221)
Q Consensus 197 k~Il~~ii~il~i~ 210 (221)
+||.+++..+++++
T Consensus 15 ~Wi~F~l~mi~vFi 28 (38)
T PF09125_consen 15 GWIAFALAMILVFI 28 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 46666555544443
No 156
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=53.55 E-value=92 Score=23.23 Aligned_cols=62 Identities=18% Similarity=0.342 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhHhhhccc
Q 027617 43 TGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGM 109 (221)
Q Consensus 43 ~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~~~ 109 (221)
..|..++.-...++.|.+.--...-..|--+++.++.++..|.+...... +.+|++|-.+|.
T Consensus 25 r~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~k~vq~yC-----eanrDELTe~GK 86 (170)
T COG4396 25 RQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLTKRVQAYC-----EANRDELTENGK 86 (170)
T ss_pred HHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHHHHHHHHH-----HhCHHHHhcCCC
Confidence 34555555567777777654444456788889999999999888887766 358999976654
No 157
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=53.48 E-value=1.5e+02 Score=25.58 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 69 VLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 69 ~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
.+..++..++.++...+..+..++
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr 197 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQ 197 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 158
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=53.47 E-value=95 Score=24.92 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=17.4
Q ss_pred HHHHhcchhchhhhHHHHHHHHHHHHHHHHH
Q 027617 165 LLHAHNTLHGVDDNVSKSKKVLTAMSRRMSR 195 (221)
Q Consensus 165 l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~ 195 (221)
|.+...+++..+-.+..++.+++.+.-|...
T Consensus 17 L~rle~qi~q~~~~~~~~qs~l~~~~~r~tv 47 (251)
T COG5415 17 LSRLESQIHQLDVALKKSQSILSQWQSRLTV 47 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4444455555555666666666666666433
No 159
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.40 E-value=2.5e+02 Score=28.16 Aligned_cols=53 Identities=8% Similarity=0.114 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHH
Q 027617 138 KDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMS 190 (221)
Q Consensus 138 ~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~ 190 (221)
...++.+.+.+..-...-.++..++..+..+...+......+..-..-++.+.
T Consensus 832 ~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~d 884 (1174)
T KOG0933|consen 832 SSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDID 884 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhh
Confidence 33344444444444444445555555555555544444444444444444333
No 160
>COG4499 Predicted membrane protein [Function unknown]
Probab=53.16 E-value=17 Score=31.76 Aligned_cols=58 Identities=12% Similarity=0.241 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027617 147 TEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 147 te~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
+.+++.=|-+....+.++..+.-..|.. .+-...||+-.|.|++++.+++++.|+-|+
T Consensus 187 ld~l~e~i~e~~~kE~e~~~kn~a~VpK----------------~k~~ifk~~giGliillvl~li~~~Y~~f~ 244 (434)
T COG4499 187 LDDLAEFIDEEYQKETEKINKNYAFVPK----------------KKYTIFKYFGIGLIILLVLLLIYFTYYYFS 244 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeeccc----------------ccceehhhHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444444444466666666555544442 234456788888888888888888888776
No 161
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=53.02 E-value=55 Score=20.58 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHH
Q 027617 180 SKSKKVLTAMSRRM 193 (221)
Q Consensus 180 ~~s~~~l~~i~rr~ 193 (221)
..|+.-+.+|.|+.
T Consensus 9 ETA~~FL~RvGr~q 22 (60)
T PF06072_consen 9 ETATEFLRRVGRQQ 22 (60)
T ss_pred ccHHHHHHHHhHHH
Confidence 35666777777775
No 162
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=51.85 E-value=1.3e+02 Score=25.99 Aligned_cols=91 Identities=11% Similarity=0.240 Sum_probs=50.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHH-------HHHHHH
Q 027617 130 VNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRN-------KWIIGT 202 (221)
Q Consensus 130 l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~d-------k~Il~~ 202 (221)
+......|...+..+.+.+.-=.....++..--.........+..+...+.+|.+++.....-..+= +--+..
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~ 309 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKN 309 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcc
Confidence 4444555555555555554444444444444444455566677777888999999888776542211 112234
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 027617 203 VVAVLVIAIILILYFKLA 220 (221)
Q Consensus 203 ii~il~i~i~~vl~~k~~ 220 (221)
+++=++++-+||.|+..|
T Consensus 310 l~GD~llaaa~isY~G~f 327 (344)
T PF12777_consen 310 LVGDSLLAAAFISYLGPF 327 (344)
T ss_dssp HHHHHHHHHHHHHCCCCT
T ss_pred cHHHHHHHHHHHHHcCCC
Confidence 445555555667665543
No 163
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=51.30 E-value=71 Score=21.31 Aligned_cols=51 Identities=18% Similarity=0.304 Sum_probs=23.3
Q ss_pred HHhhHHHHHHHHHHHHHHhhcCChhH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 41 IQTGLDEAESLIRKMDLEARSLQPNV--KAVLLAKLREYKSDLNNLKSEVKRL 91 (221)
Q Consensus 41 i~~~l~~~~~~l~~me~e~~~~~~~~--r~~~~~k~~~~r~~l~~l~~~~~~~ 91 (221)
++..+.+++.++..|+..--++..+. -..-..=++.|+..|+..+..+..+
T Consensus 12 fEea~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C~~~L~~ae~ki~~l 64 (80)
T PRK00977 12 FEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKLQQAEQRVEKL 64 (80)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555553222222221 1222333455555566665555554
No 164
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=50.99 E-value=1.1e+02 Score=23.52 Aligned_cols=130 Identities=12% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhHhhhccccCcccccHH
Q 027617 39 SEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASAD 118 (221)
Q Consensus 39 ~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~~~~~~~~~~~~ 118 (221)
.+++..--..+.-+..+..|+.....+.-..+.......+.+++.++.+++. +=..+-++..-|-+..-..
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~---------ei~~l~a~~klD~n~eK~~ 117 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELRE---------EINKLRAEVKLDLNLEKGR 117 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhHHH
Q ss_pred HHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHH
Q 027617 119 QRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKW 198 (221)
Q Consensus 119 ~r~~~~~~~~~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~ 198 (221)
.| ..++..=.++..--..++..+..-+.-|-....-..+ |
T Consensus 118 ~r--------------------------------------~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr--~ 157 (177)
T PF07798_consen 118 IR--------------------------------------EEQAKQELKIQELNNKIDTEIANLRTEIESLKWDTLR--W 157 (177)
T ss_pred HH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027617 199 IIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 199 Il~~ii~il~i~i~~vl~~ 217 (221)
+++++++++.++++++-++
T Consensus 158 ~~g~i~~~~a~~la~~r~~ 176 (177)
T PF07798_consen 158 LVGVIFGCVALVLAILRLW 176 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 165
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=50.92 E-value=20 Score=30.43 Aligned_cols=12 Identities=42% Similarity=0.913 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 027617 199 IIGTVVAVLVIA 210 (221)
Q Consensus 199 Il~~ii~il~i~ 210 (221)
|.+.+|++++|+
T Consensus 258 I~aSiiaIliIV 269 (299)
T PF02009_consen 258 IIASIIAILIIV 269 (299)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 166
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=50.55 E-value=29 Score=27.83 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 185 VLTAMSRRMSRNKWIIGTVVAVLVIAIILIL 215 (221)
Q Consensus 185 ~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl 215 (221)
-++.+.+|-.+.+.++++++++++.+..+++
T Consensus 197 KvSsvGsrfar~Ra~~ffilal~~avta~~l 227 (275)
T KOG4684|consen 197 KVSSVGSRFARRRALLFFILALTVAVTAVIL 227 (275)
T ss_pred chhhhhhHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 3566777888888888888777666554443
No 167
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=50.28 E-value=1.1e+02 Score=23.80 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=26.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhcCChhH--HHHHHHHHHHHHHHHHHHHHHH
Q 027617 39 SEIQTGLDEAESLIRKMDLEARSLQPNV--KAVLLAKLREYKSDLNNLKSEV 88 (221)
Q Consensus 39 ~~i~~~l~~~~~~l~~me~e~~~~~~~~--r~~~~~k~~~~r~~l~~l~~~~ 88 (221)
..++..-.+++.-|++|+.++..+..-. -..+++|...+..+|+.+..+|
T Consensus 116 ~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 116 QQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444555555555554443221 2346666666666666666655
No 168
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=50.24 E-value=25 Score=23.73 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027617 198 WIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~ 217 (221)
+.+|+.++++++++++|+.+
T Consensus 40 I~FWv~LA~FV~~lF~iL~~ 59 (90)
T PF15183_consen 40 IAFWVSLAAFVVFLFLILLY 59 (90)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45667777766666666543
No 169
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=50.24 E-value=3.3 Score=33.37 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 027617 204 VAVLVIAIILILYFKLAK 221 (221)
Q Consensus 204 i~il~i~i~~vl~~k~~~ 221 (221)
++|++++.++.+||||.|
T Consensus 167 llv~l~gGGa~yYfK~~K 184 (218)
T PF14283_consen 167 LLVALIGGGAYYYFKFYK 184 (218)
T ss_pred HHHHHhhcceEEEEEEec
Confidence 334445557778888865
No 170
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=50.02 E-value=87 Score=21.93 Aligned_cols=46 Identities=24% Similarity=0.308 Sum_probs=24.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHH
Q 027617 38 VSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNN 83 (221)
Q Consensus 38 ~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~ 83 (221)
+......|+.+...++..+..+..-.-..-.....++...|.+++.
T Consensus 55 ~~~Y~~Gl~~li~~id~a~~~~~~G~l~~AK~~l~~l~~lR~eyHk 100 (103)
T PF07361_consen 55 VKDYQEGLDKLIDQIDKAEALAEAGKLDEAKAALKKLDDLRKEYHK 100 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhH
Confidence 3445555555555556665555532222223455566677766665
No 171
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=49.61 E-value=94 Score=22.19 Aligned_cols=20 Identities=40% Similarity=0.549 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 027617 200 IGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 200 l~~ii~il~i~i~~vl~~k~ 219 (221)
..+++++++.++.+.+|+.+
T Consensus 95 ~~~~~~~~lp~~a~~lY~~l 114 (117)
T TIGR03142 95 AALVVVLLLPVLALGLYLKL 114 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 33444555556667788765
No 172
>PRK10884 SH3 domain-containing protein; Provisional
Probab=49.28 E-value=1.3e+02 Score=23.92 Aligned_cols=50 Identities=12% Similarity=-0.007 Sum_probs=29.6
Q ss_pred HhcchhchhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 168 AHNTLHGVDDNVSKSKKV---LTAMSRRMSRNKWIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 168 ~~~~~~~i~~~l~~s~~~---l~~i~rr~~~dk~Il~~ii~il~i~i~~vl~~ 217 (221)
...+...+...+..+..- +..-....-.+...-||+.+-.++++++++-.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGl 189 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGL 189 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 344444444444444433 44445555566666788888888888877654
No 173
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=49.04 E-value=1.2e+02 Score=24.80 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChh------------HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 027617 32 ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPN------------VKAVLLAKLREYKSDLNNLKSEVKRLVSG 94 (221)
Q Consensus 32 ~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~------------~r~~~~~k~~~~r~~l~~l~~~~~~~~~~ 94 (221)
.++.....-+...|+++...+..++.|+.+++.. ....+...+..|+-.+..|..-++-+...
T Consensus 118 ~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~ 192 (233)
T PF04065_consen 118 KEKEEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDND 192 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3467788899999999999999999998765432 12467788888888888888888777643
No 174
>PRK11519 tyrosine kinase; Provisional
Probab=49.01 E-value=2.5e+02 Score=26.91 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=25.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhcCChh-HHHHHHHHHHHHHHHHHHHHHHH
Q 027617 37 KVSEIQTGLDEAESLIRKMDLEARSLQPN-VKAVLLAKLREYKSDLNNLKSEV 88 (221)
Q Consensus 37 ~~~~i~~~l~~~~~~l~~me~e~~~~~~~-~r~~~~~k~~~~r~~l~~l~~~~ 88 (221)
.+..++..|++++.-+..+..+-..++.. ........+..++.++.+++...
T Consensus 275 ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~ 327 (719)
T PRK11519 275 QLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKE 327 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666665554433322 22334444555555555544433
No 175
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=48.75 E-value=49 Score=18.97 Aligned_cols=25 Identities=16% Similarity=0.399 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHhhcCChhHH
Q 027617 43 TGLDEAESLIRKMDLEARSLQPNVK 67 (221)
Q Consensus 43 ~~l~~~~~~l~~me~e~~~~~~~~r 67 (221)
..+++++.++-.++.+++....+.+
T Consensus 4 ~~ieelkqll~rle~eirett~sl~ 28 (46)
T PF08181_consen 4 KKIEELKQLLWRLENEIRETTDSLR 28 (46)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888876555544
No 176
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=48.29 E-value=40 Score=18.88 Aligned_cols=19 Identities=21% Similarity=0.560 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027617 199 IIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 199 Il~~ii~il~i~i~~vl~~ 217 (221)
+.|+.+++++++++|--|+
T Consensus 17 LY~GLllifvl~vLFssyf 35 (37)
T PF02419_consen 17 LYWGLLLIFVLAVLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 3456666666666555554
No 177
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=48.22 E-value=82 Score=21.09 Aligned_cols=53 Identities=13% Similarity=0.245 Sum_probs=27.3
Q ss_pred HHHhhHHHHHHHHHHHHHHhhcCChhH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 40 EIQTGLDEAESLIRKMDLEARSLQPNV--KAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 40 ~i~~~l~~~~~~l~~me~e~~~~~~~~--r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
.++..+.+++.++.+|+..--.+..+. -..-..-++.|+..|...+..+..+.
T Consensus 8 sfEeal~~LEeIV~~LE~~~l~Lees~~lyeeG~~L~k~C~~~L~~ae~kI~~l~ 62 (80)
T PRK14067 8 DFEQQLARLQEIVDALEGGDLPLEESVALYKEGLGLARACREQLAKARNEIRLFT 62 (80)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666654322222221 12233445666666666666665553
No 178
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=48.01 E-value=73 Score=20.47 Aligned_cols=25 Identities=8% Similarity=-0.021 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Q 027617 32 ERKKQKVSEIQTGLDEAESLIRKMD 56 (221)
Q Consensus 32 ~~~~~~~~~i~~~l~~~~~~l~~me 56 (221)
++.-..+.+.-..++.++..++..+
T Consensus 25 eesl~lyeeG~~L~k~c~~~L~~ae 49 (67)
T TIGR01280 25 EEALNLFERGMALARRCEKKLAQAE 49 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443333
No 179
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=47.61 E-value=45 Score=18.57 Aligned_cols=18 Identities=33% Similarity=0.266 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027617 195 RNKWIIGTVVAVLVIAII 212 (221)
Q Consensus 195 ~dk~Il~~ii~il~i~i~ 212 (221)
+=|+..|+++++++.+++
T Consensus 3 ~LK~~Vy~vV~ffv~LFi 20 (36)
T PF02532_consen 3 TLKIFVYTVVIFFVSLFI 20 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EEEEeehhhHHHHHHHHh
Confidence 446777777666655543
No 180
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=47.52 E-value=84 Score=21.06 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhcc--------Ch-----HHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 027617 5 FERYERQYCEISANLSKKCTAAASL--------DG-----ERKKQKVSEIQTGLDEAESLIRKMDLEA 59 (221)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~~~~--------~~-----~~~~~~~~~i~~~l~~~~~~l~~me~e~ 59 (221)
|-+.-.+++..+..|...+..+..+ .. .+-..+..++...+..+...|+.|+...
T Consensus 5 f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~ 72 (103)
T PF00804_consen 5 FFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDN 72 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455666666666666665221 11 1223444555666666666666666553
No 181
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=47.38 E-value=53 Score=27.51 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027617 184 KVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 184 ~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
++++.+.|.-+.=| ++.+++.++|+++.||||+.
T Consensus 161 k~lnylARNFYNlr---~lALflAFaINFILLFYKVs 194 (274)
T PF06459_consen 161 KFLNYLARNFYNLR---FLALFLAFAINFILLFYKVS 194 (274)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 56666666655444 34455667788888999863
No 182
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=46.82 E-value=1.6e+02 Score=23.96 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 027617 67 KAVLLAKLREYKSDLNNLKSEVKRLVSG 94 (221)
Q Consensus 67 r~~~~~k~~~~r~~l~~l~~~~~~~~~~ 94 (221)
+......+..++++++.+.++.+.....
T Consensus 115 k~~~~~ei~k~r~e~~~ml~evK~~~E~ 142 (230)
T PF03904_consen 115 KNIAQNEIKKVREENKSMLQEVKQSHEK 142 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777777766666665433
No 183
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=46.74 E-value=29 Score=21.65 Aligned_cols=9 Identities=22% Similarity=0.471 Sum_probs=2.8
Q ss_pred HHHHHHHHH
Q 027617 207 LVIAIILIL 215 (221)
Q Consensus 207 l~i~i~~vl 215 (221)
+++++++++
T Consensus 11 ~~~~~~~~~ 19 (70)
T PF00672_consen 11 LSLLLAWLL 19 (70)
T ss_dssp HHHHHHHH-
T ss_pred HHHHHHHHH
Confidence 333333333
No 184
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=46.46 E-value=1.3e+02 Score=22.96 Aligned_cols=81 Identities=9% Similarity=0.182 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHh-h--ccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHH----HHHHHHHHH
Q 027617 6 ERYERQYCEISANLSKKCTAA-A--SLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAV----LLAKLREYK 78 (221)
Q Consensus 6 ~~ye~e~~~~~~~i~~~l~~~-~--~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~----~~~k~~~~r 78 (221)
.+...|++.+..++-...-.+ . ..+++.-...+..+...+-.+..+++.+. |-+.|.. +..++++-+
T Consensus 71 ~d~~~eLkkL~~sll~nfleLl~~l~~~P~~~~~ki~~i~~L~~NmhhllNeyR------PhQARetLi~~me~Ql~~kr 144 (162)
T PF05983_consen 71 VDRKKELKKLNKSLLLNFLELLDILSKNPSQYERKIEDIRLLFINMHHLLNEYR------PHQARETLIMMMEEQLEEKR 144 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSS---CCCHHHHHHHHHHHHHHHHHHHHHTH------HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHhC------HHHHHHHHHHHHHHHHHHHH
Confidence 455677777777776544333 2 12334444466677777777777776653 4444554 566667777
Q ss_pred HHHHHHHHHHHHHH
Q 027617 79 SDLNNLKSEVKRLV 92 (221)
Q Consensus 79 ~~l~~l~~~~~~~~ 92 (221)
..++.+++...+++
T Consensus 145 ~~i~~i~~~~~~~~ 158 (162)
T PF05983_consen 145 EEIEEIRKVCEKAR 158 (162)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766554
No 185
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=46.40 E-value=1.1e+02 Score=22.26 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=14.8
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 027617 183 KKVLTAMSRRM-SRNKWIIGTVVAVLVIA 210 (221)
Q Consensus 183 ~~~l~~i~rr~-~~dk~Il~~ii~il~i~ 210 (221)
.+-++...+|. ..++.|.++++.+++++
T Consensus 49 ~~el~~L~rR~~li~~ai~~~~~s~ll~~ 77 (130)
T PF11026_consen 49 RRELRILRRRARLIRRAITLATLSALLVC 77 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777775 44445555444443333
No 186
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=46.23 E-value=88 Score=20.89 Aligned_cols=20 Identities=5% Similarity=0.350 Sum_probs=13.5
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 027617 2 SDVFERYERQYCEISANLSK 21 (221)
Q Consensus 2 s~~f~~ye~e~~~~~~~i~~ 21 (221)
.++++.-..||..+..++..
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~ 22 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANS 22 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777666544
No 187
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=45.77 E-value=89 Score=20.80 Aligned_cols=15 Identities=7% Similarity=0.344 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 027617 4 VFERYERQYCEISAN 18 (221)
Q Consensus 4 ~f~~ye~e~~~~~~~ 18 (221)
++...+.||..+--+
T Consensus 18 vl~~LqDE~~hm~~e 32 (79)
T PF06657_consen 18 VLKALQDEFGHMKME 32 (79)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 188
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=45.64 E-value=50 Score=18.42 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 193 MSRNKWIIGTVVAVLVIAIILILY 216 (221)
Q Consensus 193 ~~~dk~Il~~ii~il~i~i~~vl~ 216 (221)
-.-+|+.+.++++.+++.++-+++
T Consensus 7 S~fekiT~v~v~lM~i~tvg~v~~ 30 (35)
T PF13253_consen 7 STFEKITMVVVWLMLILTVGSVVA 30 (35)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777666666666665554
No 189
>CHL00038 psbL photosystem II protein L
Probab=45.52 E-value=41 Score=18.88 Aligned_cols=19 Identities=21% Similarity=0.544 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027617 199 IIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 199 Il~~ii~il~i~i~~vl~~ 217 (221)
+-|+.+++++++++|--|+
T Consensus 18 Ly~GLLlifvl~vlfssyf 36 (38)
T CHL00038 18 LYWGLLLIFVLAVLFSNYF 36 (38)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3456666666665555443
No 190
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=44.91 E-value=32 Score=25.10 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027617 198 WIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~ 217 (221)
.++++||++.+ +|+|++..
T Consensus 72 gv~aGvIg~Il-li~y~irR 90 (122)
T PF01102_consen 72 GVMAGVIGIIL-LISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHH
Confidence 34444444433 33344444
No 191
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=44.58 E-value=3.7e+02 Score=27.60 Aligned_cols=49 Identities=12% Similarity=0.138 Sum_probs=28.8
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhc
Q 027617 126 STERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHG 174 (221)
Q Consensus 126 ~~~~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~ 174 (221)
+...+.+....|..+...+.+-........+...+|+..+..+...+..
T Consensus 582 ~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~ 630 (1317)
T KOG0612|consen 582 ENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKE 630 (1317)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444555566666666666666666666777777666655544443
No 192
>PRK11281 hypothetical protein; Provisional
Probab=44.00 E-value=3.7e+02 Score=27.44 Aligned_cols=32 Identities=13% Similarity=0.032 Sum_probs=15.6
Q ss_pred HHhHHhhHhHHHHhcchhchhhhHHHHHHHHH
Q 027617 156 QDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLT 187 (221)
Q Consensus 156 ~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~ 187 (221)
..|..|.+.+.....+...+.+.+.......+
T Consensus 292 ~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~ 323 (1113)
T PRK11281 292 QRLLKATEKLNTLTQQNLRVKNWLDRLTQSER 323 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544444444444444444
No 193
>PRK11281 hypothetical protein; Provisional
Probab=43.89 E-value=3.7e+02 Score=27.43 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 69 VLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 69 ~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
.+++++...-+++....+++.+++
T Consensus 84 ~L~k~l~~Ap~~l~~a~~~Le~Lk 107 (1113)
T PRK11281 84 QLKQQLAQAPAKLRQAQAELEALK 107 (1113)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhh
Confidence 455555555555555555555443
No 194
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=43.40 E-value=22 Score=29.28 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 187 TAMSRRMSRNKWIIGTVVAVLVIAIILIL 215 (221)
Q Consensus 187 ~~i~rr~~~dk~Il~~ii~il~i~i~~vl 215 (221)
..+..+-.+.+.|++++++++++++.+++
T Consensus 187 SSVG~~faRkR~i~f~llgllfliiaigl 215 (256)
T PF09788_consen 187 SSVGPRFARKRAIIFFLLGLLFLIIAIGL 215 (256)
T ss_pred ccccchHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34455666667888877777776666554
No 195
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=43.36 E-value=1.2e+02 Score=21.61 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 027617 4 VFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLE 58 (221)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e 58 (221)
+..+--.++-....+|...-+.++..+.+.+...+..++..++.-+-...++++.
T Consensus 9 iVq~e~~~if~~yq~l~~~~~~~~~fd~egK~~~Id~m~~LidkqkiF~~Rl~LS 63 (108)
T PF08855_consen 9 IVQDELQDIFEDYQELMQMGSKYGKFDREGKKIHIDKMEELIDKQKIFYKRLELS 63 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445555566667777777888888888888888888888888888887653
No 196
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=43.32 E-value=27 Score=24.24 Aligned_cols=15 Identities=13% Similarity=0.073 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHh
Q 027617 205 AVLVIAIILILYFKL 219 (221)
Q Consensus 205 ~il~i~i~~vl~~k~ 219 (221)
+++..++.+.||.+|
T Consensus 33 v~~~t~~~l~iYp~f 47 (97)
T PF04834_consen 33 VFCSTFFSLAIYPCF 47 (97)
T ss_pred HHHHHHHHHhhhhee
Confidence 334445566777765
No 197
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=43.28 E-value=93 Score=20.34 Aligned_cols=17 Identities=12% Similarity=0.339 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 027617 3 DVFERYERQYCEISANL 19 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i 19 (221)
++|+..+..+..+++.|
T Consensus 4 E~l~~LE~ki~~aveti 20 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETI 20 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555444444444433
No 198
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=43.20 E-value=27 Score=31.96 Aligned_cols=26 Identities=23% Similarity=0.631 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027617 195 RNKWIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 195 ~dk~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
.+.-++.++++++++++++++||+++
T Consensus 342 i~~gi~Agl~g~~~V~vfm~~~Yr~~ 367 (506)
T COG0342 342 IKAGLIAGLIGLALVAVFMLLYYRLA 367 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788888889999999999864
No 199
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=43.15 E-value=1.1e+02 Score=20.97 Aligned_cols=11 Identities=36% Similarity=0.628 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 027617 45 LDEAESLIRKM 55 (221)
Q Consensus 45 l~~~~~~l~~m 55 (221)
+.+++..+..+
T Consensus 35 ~~~~~~~~~~~ 45 (105)
T PF12998_consen 35 LEELDQQIQKF 45 (105)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 200
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=42.89 E-value=1.3e+02 Score=27.31 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=37.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 36 QKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 36 ~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
..+.+.+....+++.-+..++.|+..+.. .++.+..+++.+..++..|+.++..+.
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~sa-q~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNK-QRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555566666666666666655553322 345788889999999999998885433
No 201
>PF01848 HOK_GEF: Hok/gef family; InterPro: IPR000021 The hok/gef family of Gram-negative bacterial proteins are toxic to cells when over-expressed, killing the cells from within by interfering with a vital function in the cell membrane []. Some family members (flm) increase the stability of unstable RNA [], some (pnd) induce the degradation of stable RNA at higher than optimum growth temperatures [], while others affect the release of cellular magnesium by membrane alterations []. The proteins are short (50-70 residues), consisting of an N-terminal hydrophobic (possibly membrane spanning) domain, and a C-terminal periplasmic region, which contains the toxic domain. The C-terminal region contains a conserved cysteine residue that mediates homo-dimerisation in the gef protein, although dimerisation is not necessary for the toxic effect [].; GO: 0016020 membrane
Probab=42.63 E-value=15 Score=21.48 Aligned_cols=19 Identities=5% Similarity=0.205 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027617 199 IIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 199 Il~~ii~il~i~i~~vl~~ 217 (221)
.+++++++|+.++++.+..
T Consensus 3 ~l~~liviCiTvl~~~~l~ 21 (43)
T PF01848_consen 3 ALLCLIVICITVLIFTWLT 21 (43)
T ss_pred eehhHHHHHHHHHHHHHHh
Confidence 3556666666666655543
No 202
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=42.46 E-value=6.3 Score=27.42 Aligned_cols=9 Identities=0% Similarity=0.146 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 027617 209 IAIILILYF 217 (221)
Q Consensus 209 i~i~~vl~~ 217 (221)
+++.+++|+
T Consensus 81 ~lv~~l~w~ 89 (96)
T PTZ00382 81 GLVGFLCWW 89 (96)
T ss_pred HHHHHHhhe
Confidence 333344444
No 203
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=42.37 E-value=40 Score=25.21 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 027617 196 NKWIIGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 196 dk~Il~~ii~il~i~i~~vl~~k~ 219 (221)
-|.|+.++++++.+.++++++.+.
T Consensus 74 wk~v~~~~~~~i~~s~~l~~~~r~ 97 (142)
T PF02936_consen 74 WKKVFGGVFIFIGFSVLLFIWQRS 97 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777777777777663
No 204
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=42.35 E-value=40 Score=25.02 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027617 197 KWIIGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 197 k~Il~~ii~il~i~i~~vl~~k~ 219 (221)
|.++.++++++.+.++++++.+.
T Consensus 75 k~v~~~~~~~i~~s~~~~~~~r~ 97 (136)
T cd00922 75 KTVFGGVLAFIGITGVIFGLQRA 97 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777766666666654
No 205
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=41.86 E-value=1e+02 Score=20.37 Aligned_cols=18 Identities=11% Similarity=0.267 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027617 74 LREYKSDLNNLKSEVKRL 91 (221)
Q Consensus 74 ~~~~r~~l~~l~~~~~~~ 91 (221)
++.|+..|+..+..+..+
T Consensus 42 ~k~C~~~L~~aE~ki~~l 59 (76)
T PRK14063 42 SKLCDEKLKNVQEQMAVI 59 (76)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555443
No 206
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=41.76 E-value=30 Score=20.34 Aligned_cols=15 Identities=27% Similarity=0.257 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 027617 199 IIGTVVAVLVIAIIL 213 (221)
Q Consensus 199 Il~~ii~il~i~i~~ 213 (221)
..|+.+++.++++++
T Consensus 25 ~k~~~~~~~~~li~l 39 (44)
T PF07835_consen 25 TKWGTIAIAAILIFL 39 (44)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 207
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=41.68 E-value=30 Score=23.25 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=2.2
Q ss_pred HHHHHHHHHHHHh
Q 027617 207 LVIAIILILYFKL 219 (221)
Q Consensus 207 l~i~i~~vl~~k~ 219 (221)
++-.++++-|.|.
T Consensus 21 vvW~iv~ieYrk~ 33 (81)
T PF00558_consen 21 VVWTIVYIEYRKI 33 (81)
T ss_dssp HHHHHH-------
T ss_pred HHHHHHHHHHHHH
Confidence 3333333334443
No 208
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=41.64 E-value=88 Score=24.40 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=26.0
Q ss_pred HhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 163 QSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVA 205 (221)
Q Consensus 163 e~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii~ 205 (221)
+++.++...+...+.++. +..+++.+.++.-..|..+..++.
T Consensus 3 ~~l~~is~aM~~l~~t~~-~~piL~~ie~~~~~~k~Y~~~~as 44 (186)
T COG5052 3 GQLVNISVAMLVLDNTLQ-AFPILREIENLYNRYKKYFMAGAS 44 (186)
T ss_pred hHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCcchhhHHHHHH
Confidence 455666667776666664 457778888877555544443333
No 209
>PRK10404 hypothetical protein; Provisional
Probab=41.30 E-value=1.2e+02 Score=21.18 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 184 KVLTAMSRRMSRNKWIIGTVVAVLVIAIILILY 216 (221)
Q Consensus 184 ~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl~ 216 (221)
.....-..=+..|-|--.+|.+.+.+++++++.
T Consensus 67 ~aa~~td~yV~e~Pw~avGiaagvGlllG~Ll~ 99 (101)
T PRK10404 67 QAVYRADDYVHEKPWQGIGVGAAVGLVLGLLLA 99 (101)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 333333333444666666666666666665544
No 210
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=41.17 E-value=77 Score=18.81 Aligned_cols=33 Identities=15% Similarity=0.367 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhHhhhccc
Q 027617 69 VLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGM 109 (221)
Q Consensus 69 ~~~~k~~~~r~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~~~ 109 (221)
.+++++......+..|+..|.+. .+.+||++|.
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~y--------KKa~lFp~G~ 35 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQY--------KKAELFPNGR 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHTTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHCCCch
Confidence 45666666777777777777554 3568887754
No 211
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=41.09 E-value=3.5e+02 Score=26.34 Aligned_cols=9 Identities=33% Similarity=0.431 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 027617 11 QYCEISANL 19 (221)
Q Consensus 11 e~~~~~~~i 19 (221)
++..+++++
T Consensus 517 ~~~~li~~l 525 (782)
T PRK00409 517 KLNELIASL 525 (782)
T ss_pred HHHHHHHHH
Confidence 333333333
No 212
>PRK10780 periplasmic chaperone; Provisional
Probab=40.90 E-value=1.6e+02 Score=22.34 Aligned_cols=37 Identities=5% Similarity=0.211 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHH
Q 027617 46 DEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLN 82 (221)
Q Consensus 46 ~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~ 82 (221)
.+++.....+......+++..+.....++.....++.
T Consensus 64 ~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q 100 (165)
T PRK10780 64 TDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFS 100 (165)
T ss_pred HHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555555555544433333
No 213
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=40.75 E-value=2.2e+02 Score=23.84 Aligned_cols=87 Identities=18% Similarity=0.286 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhccCh--HHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCh------hHHHHHHHHH
Q 027617 3 DVFERYERQYCEISANLSKKCTAAASLDG--ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQP------NVKAVLLAKL 74 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~~~--~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~------~~r~~~~~k~ 74 (221)
.++..|+.++..+-..|......-..... +.-...+..+...+.........|+.++..+-. ..+..+..++
T Consensus 47 ~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i 126 (312)
T PF00038_consen 47 RIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQI 126 (312)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHH
Confidence 46677777777666666554443322211 112233445555566566666666666554422 1244566666
Q ss_pred HHHHHHHHHHHHHHH
Q 027617 75 REYKSDLNNLKSEVK 89 (221)
Q Consensus 75 ~~~r~~l~~l~~~~~ 89 (221)
...+.++.-++....
T Consensus 127 ~~L~eEl~fl~~~he 141 (312)
T PF00038_consen 127 QSLKEELEFLKQNHE 141 (312)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh
Confidence 666666665555443
No 214
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=40.57 E-value=1.5e+02 Score=21.80 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhc
Q 027617 137 IKDSRRTMLETEELGVSILQDLSSQRQSLLHAHN 170 (221)
Q Consensus 137 L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~ 170 (221)
|++-..-+++..++...|.+++..=++.+..++.
T Consensus 70 Id~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~ 103 (126)
T PF07889_consen 70 IDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGD 103 (126)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3333444444444444444444333333333333
No 215
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=40.34 E-value=1.5e+02 Score=21.94 Aligned_cols=28 Identities=11% Similarity=0.267 Sum_probs=12.2
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 61 SLQPNVKAVLLAKLREYKSDLNNLKSEV 88 (221)
Q Consensus 61 ~~~~~~r~~~~~k~~~~r~~l~~l~~~~ 88 (221)
.+++..++.....+.....++..+....
T Consensus 72 ~ls~~~~~~~~~~l~~~~~~l~~~~~~~ 99 (158)
T PF03938_consen 72 TLSEEERQKRQQELQQKEQELQQFQQQA 99 (158)
T ss_dssp --SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444545555554544444444444333
No 216
>PHA03240 envelope glycoprotein M; Provisional
Probab=40.29 E-value=30 Score=27.75 Aligned_cols=18 Identities=22% Similarity=0.733 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027617 197 KWIIGTVVAVLVIAIILI 214 (221)
Q Consensus 197 k~Il~~ii~il~i~i~~v 214 (221)
-||+.+||++.+|+++++
T Consensus 214 ~WIiilIIiIiIIIL~cf 231 (258)
T PHA03240 214 AWIFIAIIIIIVIILFFF 231 (258)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 355555554544444443
No 217
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=40.13 E-value=5.3e+02 Score=28.12 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=50.4
Q ss_pred HhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHH
Q 027617 123 LMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVL 186 (221)
Q Consensus 123 ~~~~~~~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l 186 (221)
.....+..++.+..+..=++.+.++++++...+...+.-.-.+..+.++.+...+.+..-+...
T Consensus 1852 ~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~ele~a~erad~~e~~~~~lr~k~ 1915 (1930)
T KOG0161|consen 1852 IERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQRELEEAEERADTAESELNKLRSKL 1915 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566778888999999999999999999999988888888888888877777666554433
No 218
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=40.08 E-value=1.2e+02 Score=20.66 Aligned_cols=46 Identities=9% Similarity=0.164 Sum_probs=31.3
Q ss_pred hhHhHHHHhcchhchhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 027617 161 QRQSLLHAHNTLHGVDDNVSKSKKVLTAMS---RRMSRNKWIIGTVVAV 206 (221)
Q Consensus 161 Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~---rr~~~dk~Il~~ii~i 206 (221)
-++.+..+..++......+.....-.+... |+.+++++|--|+++=
T Consensus 6 l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~eRK~RtHRLi~rGa~lE 54 (86)
T PF12958_consen 6 LQAEIEKAEKKLEQAEHKIKQLENRKKKLEKKERKERTHRLIERGAILE 54 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344455566666666666666666666665 8899999988777653
No 219
>KOG3443 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.06 E-value=1.7e+02 Score=22.53 Aligned_cols=49 Identities=20% Similarity=0.128 Sum_probs=39.0
Q ss_pred HHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 153 SILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIG 201 (221)
Q Consensus 153 ~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~ 201 (221)
++++-++.|++.+++....-..+.+-...+.+.+..+.+|-.+++..+.
T Consensus 32 tv~~iI~aqkQml~rfektnemllNc~~l~~~rl~~as~r~l~H~~tL~ 80 (184)
T KOG3443|consen 32 TVLEIIHAQKQMLERFEKTNEMLLNCNKLSVKRLDLASERFLQHLITLT 80 (184)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888888888888888888888888888888888888876654
No 220
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=39.14 E-value=1.1e+02 Score=20.11 Aligned_cols=18 Identities=6% Similarity=0.231 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027617 74 LREYKSDLNNLKSEVKRL 91 (221)
Q Consensus 74 ~~~~r~~l~~l~~~~~~~ 91 (221)
++.|+..|+..+..+..+
T Consensus 43 ~k~c~~~L~~ae~kv~~l 60 (75)
T PRK14064 43 TKLCQDKLQSAEKRMAKV 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555444433
No 221
>PRK15058 cytochrome b562; Provisional
Probab=39.06 E-value=1.6e+02 Score=21.72 Aligned_cols=13 Identities=0% Similarity=0.253 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 027617 7 RYERQYCEISANL 19 (221)
Q Consensus 7 ~ye~e~~~~~~~i 19 (221)
.|.+-|..++.+|
T Consensus 82 ~Y~~G~d~Li~qI 94 (128)
T PRK15058 82 DFRHGFDILVGQI 94 (128)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 222
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=38.82 E-value=2.6e+02 Score=25.53 Aligned_cols=13 Identities=15% Similarity=0.463 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 027617 77 YKSDLNNLKSEVK 89 (221)
Q Consensus 77 ~r~~l~~l~~~~~ 89 (221)
.+.+++.++.+..
T Consensus 89 ae~d~~~~E~~i~ 101 (604)
T KOG3564|consen 89 AEADCEKLETQIQ 101 (604)
T ss_pred HhhhHHHHHHHHH
Confidence 3334444444433
No 223
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=38.68 E-value=52 Score=18.54 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027617 199 IIGTVVAVLVIAIILILY 216 (221)
Q Consensus 199 Il~~ii~il~i~i~~vl~ 216 (221)
+.|+.+++++++++|--|
T Consensus 19 Ly~GlLlifvl~vLFssY 36 (39)
T PRK00753 19 LYLGLLLVFVLGILFSSY 36 (39)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345555666666555444
No 224
>COG4640 Predicted membrane protein [Function unknown]
Probab=38.64 E-value=38 Score=29.79 Aligned_cols=17 Identities=35% Similarity=0.272 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027617 196 NKWIIGTVVAVLVIAII 212 (221)
Q Consensus 196 dk~Il~~ii~il~i~i~ 212 (221)
.++|.|.++++.+|+|+
T Consensus 50 K~ii~was~a~~lIlii 66 (465)
T COG4640 50 KKIIPWASGAFILILII 66 (465)
T ss_pred ceeehhHHHHHHHHHHH
Confidence 35777766655544443
No 225
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=38.61 E-value=1.2e+02 Score=20.12 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027617 75 REYKSDLNNLKSEVKRL 91 (221)
Q Consensus 75 ~~~r~~l~~l~~~~~~~ 91 (221)
+.|+..|...+..+..+
T Consensus 44 k~C~~~L~~ae~kv~~l 60 (76)
T PRK14068 44 AACDTTLKNAEKKVNDL 60 (76)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 226
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.44 E-value=3.9e+02 Score=26.17 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhccChHH------HHHHHHHHHhhHHHHHHHHHHHHHHhhcCCh------hHHHHHHHHHH
Q 027617 8 YERQYCEISANLSKKCTAAASLDGER------KKQKVSEIQTGLDEAESLIRKMDLEARSLQP------NVKAVLLAKLR 75 (221)
Q Consensus 8 ye~e~~~~~~~i~~~l~~~~~~~~~~------~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~------~~r~~~~~k~~ 75 (221)
++-+|..+..++...+.++-+.++++ ..+...+.+.....+.+++..|+.++.++.. .....+..++.
T Consensus 616 lD~~f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq 695 (970)
T KOG0946|consen 616 LDFEFKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQ 695 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467777777777776664333321 2233344445555555555555555544321 12334555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027617 76 EYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 76 ~~r~~l~~l~~~~~~~~ 92 (221)
.......++++++.-++
T Consensus 696 ~~~s~hsql~~q~~~Lk 712 (970)
T KOG0946|consen 696 DFISEHSQLKDQLDLLK 712 (970)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555444
No 227
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.32 E-value=1.1e+02 Score=24.47 Aligned_cols=22 Identities=5% Similarity=0.249 Sum_probs=8.5
Q ss_pred HhcchhchhhhHHHHHHHHHHH
Q 027617 168 AHNTLHGVDDNVSKSKKVLTAM 189 (221)
Q Consensus 168 ~~~~~~~i~~~l~~s~~~l~~i 189 (221)
+++-+++|......+..+-..|
T Consensus 126 Vdd~MdeI~eQqe~a~eIseAi 147 (221)
T KOG1656|consen 126 VDDLMDEIAEQQEVAEEISEAI 147 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444443333333
No 228
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=38.31 E-value=98 Score=19.15 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 027617 48 AESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSE 87 (221)
Q Consensus 48 ~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~ 87 (221)
..++...+....+++|+..|..|.......+..+..-...
T Consensus 28 ~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~~~ 67 (69)
T PF00505_consen 28 NKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEMPE 67 (69)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556666788899999999988887776666554443
No 229
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=38.29 E-value=11 Score=24.11 Aligned_cols=6 Identities=17% Similarity=0.827 Sum_probs=0.0
Q ss_pred HHHHHh
Q 027617 214 ILYFKL 219 (221)
Q Consensus 214 vl~~k~ 219 (221)
++.|++
T Consensus 31 f~iyR~ 36 (64)
T PF01034_consen 31 FLIYRM 36 (64)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333444
No 230
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=37.63 E-value=1.2e+02 Score=19.99 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027617 74 LREYKSDLNNLKSEVKRL 91 (221)
Q Consensus 74 ~~~~r~~l~~l~~~~~~~ 91 (221)
++.|+..|...+..+..+
T Consensus 41 ~k~C~~~L~~ae~kv~~l 58 (75)
T PRK14066 41 AAFCSKKLDEAERRVEVL 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555554444
No 231
>PF08196 UL2: UL2 protein; InterPro: IPR013269 This entry contains Orf UL2 of Human cytomegalovirus (HHV-5) (Human herpesvirus 5), which is a short protein of unknown function [].
Probab=37.55 E-value=81 Score=19.21 Aligned_cols=20 Identities=15% Similarity=0.424 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 027617 202 TVVAVLVIAIILILYFKLAK 221 (221)
Q Consensus 202 ~ii~il~i~i~~vl~~k~~~ 221 (221)
-+|.+..++|..++|.|+.|
T Consensus 37 rgif~itlviwt~vwlkllr 56 (60)
T PF08196_consen 37 RGIFLITLVIWTVVWLKLLR 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555667788888754
No 232
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=37.48 E-value=3.2e+02 Score=24.82 Aligned_cols=80 Identities=15% Similarity=0.301 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHh-hcCChhH-HH---HHHHHHHHHHHHHHH
Q 027617 9 ERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEA-RSLQPNV-KA---VLLAKLREYKSDLNN 83 (221)
Q Consensus 9 e~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~-~~~~~~~-r~---~~~~k~~~~r~~l~~ 83 (221)
+.-++.++..|...-... +.+| ...+..++..+++++.-|..++.=- ..+++.. +. ....-+++.-.|+..
T Consensus 121 eSRl~tv~~~l~~la~~~-~~Dp---~~Ri~~Le~e~~~i~~EI~~l~aG~~~~ld~~~~~er~~~i~~la~~L~~DFr~ 196 (478)
T PF11855_consen 121 ESRLNTVFDALRQLAEGT-DPDP---ERRIAELEREIAEIDAEIDRLEAGDVPVLDDTQARERARQILQLARELPADFRR 196 (478)
T ss_pred HHHHHHHHHHHHHHHHhc-CCCH---HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554433332 2223 3445667777777777777665321 1112211 11 122334455555555
Q ss_pred HHHHHHHHH
Q 027617 84 LKSEVKRLV 92 (221)
Q Consensus 84 l~~~~~~~~ 92 (221)
+..+|+.+.
T Consensus 197 V~~~~r~l~ 205 (478)
T PF11855_consen 197 VEDNFRELD 205 (478)
T ss_pred HHHHHHHHH
Confidence 555555554
No 233
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=37.25 E-value=59 Score=22.20 Aligned_cols=18 Identities=11% Similarity=0.144 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027617 201 GTVVAVLVIAIILILYFK 218 (221)
Q Consensus 201 ~~ii~il~i~i~~vl~~k 218 (221)
..++++|+++.+++.+.|
T Consensus 40 I~~iFil~VilwfvCC~k 57 (94)
T PF05393_consen 40 ICGIFILLVILWFVCCKK 57 (94)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444455555555443
No 234
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=36.43 E-value=3.2e+02 Score=24.50 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHh
Q 027617 3 DVFERYERQYCEISANLSKKCTAA 26 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~ 26 (221)
++|+..|+|=..+.+.+=..++++
T Consensus 190 ~lentlEQEqEalvN~LwKrmdkL 213 (552)
T KOG2129|consen 190 QLENTLEQEQEALVNSLWKRMDKL 213 (552)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544444444444433
No 235
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=36.39 E-value=2e+02 Score=22.14 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 67 KAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 67 r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
...+..++...+..++.+.+++..+.
T Consensus 125 ~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 125 LKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666665
No 236
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=35.72 E-value=2.1e+02 Score=22.20 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHhhcCChhH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 44 GLDEAESLIRKMDLEARSLQPNV--KAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 44 ~l~~~~~~l~~me~e~~~~~~~~--r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
.-.+.+..-..|+.|+..+.... -+....+.+..|.....+..++....
T Consensus 114 L~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~ 164 (171)
T PF04799_consen 114 LCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQ 164 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566677776665432 24566666777777777777776655
No 237
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=35.67 E-value=1.2e+02 Score=19.37 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHH
Q 027617 48 AESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNN 83 (221)
Q Consensus 48 ~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~ 83 (221)
..++...+-...+.+++++|..|..+.+..+..+..
T Consensus 32 ~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~~ 67 (73)
T PF09011_consen 32 FREVMKEISERWKSLSEEEKEPYEERAKEDKERYER 67 (73)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 344556667788899999999999988877666553
No 238
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=35.33 E-value=2.8e+02 Score=23.49 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=27.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHH
Q 027617 128 ERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHA 168 (221)
Q Consensus 128 ~~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~ 168 (221)
+.++++.+.| .|+....++-..|.+.-..+..=|||++++
T Consensus 250 QE~nREaNTl-~SKS~~~~it~~~vElK~~IEqmREQVQNi 289 (290)
T COG1561 250 QEFNREANTL-GSKSNAAEITAAVVELKVLIEQMREQVQNI 289 (290)
T ss_pred HHHhHHHHhh-hhccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455555555 457777788888888777777778887764
No 239
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=35.22 E-value=1.3e+02 Score=25.95 Aligned_cols=30 Identities=7% Similarity=0.172 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 027617 30 DGERKKQKVSEIQTGLDEAESLIRKMDLEA 59 (221)
Q Consensus 30 ~~~~~~~~~~~i~~~l~~~~~~l~~me~e~ 59 (221)
.+.+..+.+.+++..+++++..+..||..+
T Consensus 62 ~~~e~~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 62 LSAEERELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred CChhHHHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 345667889999999999999999999665
No 240
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=35.13 E-value=4.7e+02 Score=26.15 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=6.0
Q ss_pred hhhHHHHHHHHHHHHH
Q 027617 176 DDNVSKSKKVLTAMSR 191 (221)
Q Consensus 176 ~~~l~~s~~~l~~i~r 191 (221)
...+.....-+.....
T Consensus 475 ~~~l~~l~~~l~~l~~ 490 (1164)
T TIGR02169 475 KEEYDRVEKELSKLQR 490 (1164)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 241
>PF15202 Adipogenin: Adipogenin
Probab=35.07 E-value=72 Score=20.61 Aligned_cols=23 Identities=13% Similarity=0.375 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 027617 198 WIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
+++|+.+-+-+++++.|+|.+|.
T Consensus 17 lvfwlclpv~lllfl~ivwlrfl 39 (81)
T PF15202_consen 17 LVFWLCLPVGLLLFLLIVWLRFL 39 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555567777763
No 242
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=35.02 E-value=4.2e+02 Score=25.45 Aligned_cols=169 Identities=14% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhcCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhHhhhccccCcc
Q 027617 35 KQKVSEIQTGLDEAESLIRKMDLEARSLQPNV-KAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADAL 113 (221)
Q Consensus 35 ~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~-r~~~~~k~~~~r~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~~~~~~~ 113 (221)
.+.+..++..|+.++.-+..+..+-..+++.. -..+..++.+++.++..++.....+...+
T Consensus 273 ~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~------------------ 334 (726)
T PRK09841 273 QRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLY------------------ 334 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------
Q ss_pred cccHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHH
Q 027617 114 TASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRM 193 (221)
Q Consensus 114 ~~~~~~r~~~~~~~~~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~ 193 (221)
+++.-.-..+......+.+....+..-...+-+.+..-.....+....++.....-.+..++.-.......-++-+..-.
T Consensus 335 ~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a~~~~~~rIid~A~ 414 (726)
T PRK09841 335 KKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSAIGNVRIIDPAV 414 (726)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeccCCC
Q ss_pred H--------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027617 194 S--------RNKWIIGTVVAVLVIAIILILYFKLAK 221 (221)
Q Consensus 194 ~--------~dk~Il~~ii~il~i~i~~vl~~k~~~ 221 (221)
. +-.+++.++++-++++++++++.-++.
T Consensus 415 ~p~~P~~P~~~~~~~~g~~lGl~lg~~~~~~~~~l~ 450 (726)
T PRK09841 415 TQPQPVKPKKALNVVLGFILGLFISVGAVLARAMLR 450 (726)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 243
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=34.69 E-value=2.1e+02 Score=21.95 Aligned_cols=46 Identities=22% Similarity=0.572 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhhcCChhH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 45 LDEAESLIRKMDLEARSLQPNV--KAVLLAKLREYKSDLNNLKSEVKR 90 (221)
Q Consensus 45 l~~~~~~l~~me~e~~~~~~~~--r~~~~~k~~~~r~~l~~l~~~~~~ 90 (221)
|.++.+-+..++.+...++... .......++....++..++..++.
T Consensus 113 L~e~snki~kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I~d~iK~ 160 (163)
T PF03233_consen 113 LEEISNKIRKLETEVKKLKDNIVTEKLIEELIKDFDERLKEIRDKIKK 160 (163)
T ss_pred HHHHHHHHHHHHHHHHhHhhhccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444443221 235666677777777777766654
No 244
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=34.54 E-value=38 Score=29.00 Aligned_cols=11 Identities=18% Similarity=0.652 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 027617 207 LVIAIILILYF 217 (221)
Q Consensus 207 l~i~i~~vl~~ 217 (221)
++++|++|||.
T Consensus 164 ~l~vla~ivY~ 174 (318)
T PF06682_consen 164 FLLVLAFIVYS 174 (318)
T ss_pred HHHHHHHHHHH
Confidence 33333444544
No 245
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=34.46 E-value=69 Score=16.90 Aligned_cols=10 Identities=20% Similarity=0.424 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 027617 200 IGTVVAVLVI 209 (221)
Q Consensus 200 l~~ii~il~i 209 (221)
++++++++++
T Consensus 6 i~g~llv~lL 15 (29)
T PRK14750 6 VCGALLVLLL 15 (29)
T ss_pred HHHHHHHHHH
Confidence 3344443333
No 246
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=34.46 E-value=1.4e+02 Score=19.89 Aligned_cols=6 Identities=0% Similarity=0.080 Sum_probs=2.3
Q ss_pred HHHHHH
Q 027617 16 SANLSK 21 (221)
Q Consensus 16 ~~~i~~ 21 (221)
++.|+.
T Consensus 6 Ld~ir~ 11 (79)
T PF08581_consen 6 LDAIRQ 11 (79)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 247
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=33.80 E-value=2.7e+02 Score=24.63 Aligned_cols=52 Identities=19% Similarity=0.276 Sum_probs=32.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 36 QKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 36 ~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
+.+..++..+.+++.-+..++..+...| +...++++....++.+.+.+..+.
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~-----k~~~k~~~~~~q~~~~~k~~~~~~ 293 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNP-----KKKNKLKELEEQLASLEKRIEEAE 293 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc-----chhhHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888887776666 344455555555555555554443
No 248
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=33.64 E-value=1.3e+02 Score=24.00 Aligned_cols=57 Identities=12% Similarity=0.285 Sum_probs=43.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 027617 38 VSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 94 (221)
Q Consensus 38 ~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~~ 94 (221)
..+++..++....-++.|+.-+..+..-....++.....+++++..+-..|..+...
T Consensus 7 ~~~Ve~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~kkEyqkiG~af~~Lsqa 63 (207)
T cd07669 7 LQDVEERVDVFKAFSKKMDDSVLQLSNVASELVRKHLGGFRKEFQKLGNAFQAISHS 63 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHH
Confidence 457888888899999999888876655444556666788888888888888777643
No 249
>COG3149 PulM Type II secretory pathway, component PulM [Intracellular trafficking and secretion]
Probab=33.64 E-value=61 Score=25.10 Aligned_cols=23 Identities=17% Similarity=0.494 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027617 194 SRNKWIIGTVVAVLVIAIILILY 216 (221)
Q Consensus 194 ~~dk~Il~~ii~il~i~i~~vl~ 216 (221)
+-.|++++++.++|+++.++++|
T Consensus 34 REr~mL~g~Ga~L~Lvi~Y~~~W 56 (181)
T COG3149 34 RERKMLLGGGAFLLLVILYLLIW 56 (181)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHh
Confidence 33456666666666666555555
No 250
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=33.35 E-value=38 Score=25.64 Aligned_cols=19 Identities=21% Similarity=0.581 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 027617 202 TVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 202 ~ii~il~i~i~~vl~~k~~ 220 (221)
.++=+-.|+|++++.|+|+
T Consensus 84 ~imPlYtiGI~~f~lY~l~ 102 (152)
T PF15361_consen 84 QIMPLYTIGIVLFILYTLF 102 (152)
T ss_pred hHhHHHHHHHHHHHHHHHH
Confidence 3333344444444444444
No 251
>PF13864 Enkurin: Calmodulin-binding
Probab=33.13 E-value=1.6e+02 Score=20.19 Aligned_cols=57 Identities=18% Similarity=0.332 Sum_probs=28.2
Q ss_pred cChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 29 LDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91 (221)
Q Consensus 29 ~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~ 91 (221)
++.++|..++..+....+++..-+..|-.-+. ......+-..+-.++..+..++..+
T Consensus 37 l~eeER~~lL~~Lk~~~~el~~ey~~lp~~~D------T~~~~~rK~~lE~~L~qlE~dI~~l 93 (98)
T PF13864_consen 37 LSEEERQELLEGLKKNWDELNKEYQKLPFSID------TLRKKRRKEELEKELKQLEKDIKKL 93 (98)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCcccC------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777776666666655554444433222 1223333344445555555555443
No 252
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=32.99 E-value=4.1e+02 Score=24.76 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=20.6
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 027617 30 DGERKKQKVSEIQTGLDEAESLIRKMDLEARS 61 (221)
Q Consensus 30 ~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~ 61 (221)
+..+|.++...+...|+.++.+-+|...=+.+
T Consensus 36 n~sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss 67 (575)
T KOG2150|consen 36 NVSQKEKLESDLKKEIKKLQRLRDQIKTWQSS 67 (575)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 45566677777777777776666666554443
No 253
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=32.96 E-value=1.6e+02 Score=20.09 Aligned_cols=54 Identities=28% Similarity=0.327 Sum_probs=36.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhcCC-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 39 SEIQTGLDEAESLIRKMDLEARSLQ-----PNVKAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 39 ~~i~~~l~~~~~~l~~me~e~~~~~-----~~~r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
.+++..++.++.++..........+ ...+..+...+.....++.+|.+.+.-..
T Consensus 8 ~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive 66 (97)
T PF09177_consen 8 DEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVE 66 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888776666544 12345666777777777777777766544
No 254
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=32.96 E-value=1.3e+02 Score=20.46 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHhhc--CChhHHHHHHHHHHHHHH
Q 027617 43 TGLDEAESLIRKMDLEARS--LQPNVKAVLLAKLREYKS 79 (221)
Q Consensus 43 ~~l~~~~~~l~~me~e~~~--~~~~~r~~~~~k~~~~r~ 79 (221)
.++..+.+++.-++....+ +++..++.+..-+++|++
T Consensus 7 tK~rni~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~y~~ 45 (85)
T PF07240_consen 7 TKIRNIQELIAFYEKYSPRLPLTPQDRQRIDRFIRRYKE 45 (85)
T ss_pred HHHhhHHHHHHHHHHcCccCCCCHHHHHHHHHHHHHHHH
Confidence 4566777788888888777 456667777777777753
No 255
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=32.94 E-value=1.5e+02 Score=23.79 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=42.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 027617 38 VSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVS 93 (221)
Q Consensus 38 ~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~ 93 (221)
..+++..++....-++.|+.-+..+..-....++.....+++++..+-..|..+..
T Consensus 7 ~~~VE~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~KkEyqkiG~af~~Lsq 62 (210)
T cd07668 7 LVEIEQKCEAVGRFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLAT 62 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHH
Confidence 35778888888888888888877665544455666678888888888888877654
No 256
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=32.83 E-value=1.4e+02 Score=19.47 Aligned_cols=85 Identities=18% Similarity=0.238 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhcc----ChHH---HHHHHHHHHhhHHHHHHHHHHHHHHhhc---CChhHHHHHHHHH
Q 027617 5 FERYERQYCEISANLSKKCTAAASL----DGER---KKQKVSEIQTGLDEAESLIRKMDLEARS---LQPNVKAVLLAKL 74 (221)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~~~~----~~~~---~~~~~~~i~~~l~~~~~~l~~me~e~~~---~~~~~r~~~~~k~ 74 (221)
+..|..++..+..=|...-..+... +++. .......+...+......++.+...... .+|.....+..++
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~ 82 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKL 82 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 5566666666666555555554221 2222 2233334444444444444444333322 2344456677777
Q ss_pred HHHHHHHHHHHHHHH
Q 027617 75 REYKSDLNNLKSEVK 89 (221)
Q Consensus 75 ~~~r~~l~~l~~~~~ 89 (221)
......+..+.....
T Consensus 83 ~~l~~~w~~l~~~~~ 97 (105)
T PF00435_consen 83 EELNQRWEALCELVE 97 (105)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777666554
No 257
>PF09057 Smac_DIABLO: Second Mitochondria-derived Activator of Caspases; InterPro: IPR015142 This entry represents Smac (Second Mitochondria-derived Activator of Caspases) and DIABLO (Direct IAP-Binding protein with Low PI) proteins and their homologues. Smac promotes apoptosis by activating caspases in the cytochrome c/Apaf-1/caspase-9 pathway, and by opposing the inhibitory activity of inhibitor of apoptosis proteins (XIAP-BIR3). The protein assumes an elongated three-helix bundle structure, and forms a dimer in solution []. ; GO: 0006917 induction of apoptosis, 0006919 activation of caspase activity, 0005739 mitochondrion; PDB: 1XB0_I 1G73_B 3UIH_P 1XB1_H 3UIJ_Q 3D9U_B 1FEW_A 1TW6_D 1G3F_B.
Probab=32.81 E-value=2.7e+02 Score=22.60 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 027617 43 TGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNL 96 (221)
Q Consensus 43 ~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~~~~ 96 (221)
..+..+-.+.+++...+..+.++.-..+.+-+-..|.+..+.+.++.++.+.+.
T Consensus 97 kav~tLisL~k~Y~~~lgKl~~~EeD~vWqvIIg~R~E~~dk~~e~~rlEs~w~ 150 (234)
T PF09057_consen 97 KAVHTLISLQKRYLSSLGKLNSAEEDAVWQVIIGQRVEMNDKQQECLRLESTWM 150 (234)
T ss_dssp HHHHHHHHHHHHHHHCTTTSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555566666777778888888999999999999998887664
No 258
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=32.77 E-value=2.2e+02 Score=21.62 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 67 KAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 67 r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
++.+..++..|+.+.++++++-+.+.
T Consensus 68 ~~~~~~~i~~Y~~~~~~~~~e~~~l~ 93 (157)
T PF14235_consen 68 RAAYQKKIARYKKEKARYKSEAEELE 93 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888755554
No 259
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=32.66 E-value=2e+02 Score=21.06 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=31.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhcCC-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 37 KVSEIQTGLDEAESLIRKMDLEARSLQ-----PNVKAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 37 ~~~~i~~~l~~~~~~l~~me~e~~~~~-----~~~r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
....++..|.+........+--+..++ .-.+..|.+-++.|..-++.|.++...-.
T Consensus 53 ~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e 113 (126)
T PF09403_consen 53 EAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLDKEIAEQE 113 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555444444433332222 12367788888888877777777775543
No 260
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=32.58 E-value=2.4e+02 Score=21.91 Aligned_cols=17 Identities=12% Similarity=0.237 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027617 7 RYERQYCEISANLSKKC 23 (221)
Q Consensus 7 ~ye~e~~~~~~~i~~~l 23 (221)
.|...|..+...|...+
T Consensus 84 ~Y~~~f~syY~~L~~~i 100 (184)
T PF05791_consen 84 NYNTTFQSYYDTLVEAI 100 (184)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555554444
No 261
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=32.20 E-value=1.5e+02 Score=19.40 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=14.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhc
Q 027617 37 KVSEIQTGLDEAESLIRKMDLEARS 61 (221)
Q Consensus 37 ~~~~i~~~l~~~~~~l~~me~e~~~ 61 (221)
.+..++..+..|=+.|..+..|+..
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~ee 29 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEE 29 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666555543
No 262
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=32.09 E-value=45 Score=27.02 Aligned_cols=13 Identities=38% Similarity=0.618 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 027617 198 WIIGTVVAVLVIA 210 (221)
Q Consensus 198 ~Il~~ii~il~i~ 210 (221)
+|+-++|+++++.
T Consensus 189 vilpvvIaliVit 201 (259)
T PF07010_consen 189 VILPVVIALIVIT 201 (259)
T ss_pred hhHHHHHHHHHHH
Confidence 3444444333333
No 263
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=32.08 E-value=2.8e+02 Score=22.61 Aligned_cols=23 Identities=9% Similarity=0.442 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 027617 198 WIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
|++.++-+++++++.+|-|.|+.
T Consensus 201 Wv~l~iG~iIi~tLtYvGwRKYr 223 (232)
T PF09577_consen 201 WVMLSIGGIIIATLTYVGWRKYR 223 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555666788888863
No 264
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=32.06 E-value=1.1e+02 Score=22.22 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCh
Q 027617 32 ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQP 64 (221)
Q Consensus 32 ~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~ 64 (221)
+...+.+.+++..++.++.-+.+||.-+-+-..
T Consensus 77 ~s~~~~l~~~~~~~~~~e~Rlr~mE~yVTS~~f 109 (118)
T PRK10697 77 PSSSELLDEVDRELAAGEQRLREMERYVTSDTF 109 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 356678899999999999999999988876443
No 265
>PF14282 FlxA: FlxA-like protein
Probab=31.87 E-value=1.8e+02 Score=20.37 Aligned_cols=55 Identities=9% Similarity=0.333 Sum_probs=29.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 027617 35 KQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVS 93 (221)
Q Consensus 35 ~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~ 93 (221)
...+..++..+..+..-|..+... ..+|+.. -..+...+...+..|...+..+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~-~~~~~e~---k~~q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQD-SDLDAEQ---KQQQIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc-cCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777666654432 1234332 234455555555555555555543
No 266
>MTH00158 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=31.21 E-value=92 Score=16.75 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027617 198 WIIGTVVAVLVIAIILILYFK 218 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k 218 (221)
+++++...+++.++...+|+.
T Consensus 10 ~~l~~~f~~~~~~~~~~~~f~ 30 (32)
T MTH00158 10 LILFILFLITFILFNILNYFI 30 (32)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 445555555555555555553
No 267
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=31.12 E-value=2.2e+02 Score=21.00 Aligned_cols=128 Identities=13% Similarity=0.120 Sum_probs=67.1
Q ss_pred HHHhhHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhHhhhccccCcccccHH
Q 027617 40 EIQTGLDEAESLIRKMDLEARSLQ-PNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASAD 118 (221)
Q Consensus 40 ~i~~~l~~~~~~l~~me~e~~~~~-~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~~~~~~~~~~~~ 118 (221)
.++..|.-..+-+..++.-+..+. |..+..+.....+++.-...|...+..+-... .+...+.|.-. ..-.+
T Consensus 4 ~Ln~Lie~~~D~~~gY~~aae~v~~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p---~~~gs~~g~lh----r~w~~ 76 (139)
T TIGR02284 4 SLNDLIEISIDGKDGFEESAEEVKDPELATLFRRIAGEKSAIVSELQQVVASLGGKP---EDHGSMVGSLH----QFWGK 76 (139)
T ss_pred HHHHHHHHcccHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---CCCCcHHHHHH----HHHHH
Confidence 445555555555566666666555 45566777777777777777777776543221 11111111000 00000
Q ss_pred HHHHHhhh-----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhc
Q 027617 119 QRSRLMMS-----TERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHG 174 (221)
Q Consensus 119 ~r~~~~~~-----~~~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~ 174 (221)
-+.-+..+ .+...++.+.....-.-+-+-.....++..-|..|...+++.++.+..
T Consensus 77 lks~~~~~~d~aiL~~~e~gEd~~~~~y~~aL~~~~l~~~~r~~l~~q~~~i~~~~d~i~~ 137 (139)
T TIGR02284 77 IRATLTPNDDYVVLEEAERGEDRAKKAYDETLADQDTPAAARDVALRQYPGVRACHDVIRA 137 (139)
T ss_pred HHHHHcCCChHHHHHHHHHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 00111100 122334444444444444444467888888999999999988887764
No 268
>PRK14082 hypothetical protein; Provisional
Probab=30.95 E-value=1.5e+02 Score=19.01 Aligned_cols=39 Identities=8% Similarity=0.082 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHhH-hhccChHHHHHHHHHHHhhH
Q 027617 7 RYERQYCEISANLSKKCTA-AASLDGERKKQKVSEIQTGL 45 (221)
Q Consensus 7 ~ye~e~~~~~~~i~~~l~~-~~~~~~~~~~~~~~~i~~~l 45 (221)
+++.++..+++.+.-++.+ +.+++..+|.++.+++.-.+
T Consensus 6 ~~~~e~e~ii~~FepkIkKsL~~T~yqeREDLeQElk~Ki 45 (65)
T PRK14082 6 DDTEEIEHLIENFSPMIKKKLSNTSYQEREDLEQELKIKI 45 (65)
T ss_pred hhHHHHHHHHHHccHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 5667777777777766655 56677788888888776544
No 269
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=30.86 E-value=2.5e+02 Score=21.65 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhhcCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 46 DEAESLIRKMDLEARSLQP----NVKAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 46 ~~~~~~l~~me~e~~~~~~----~~r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
.++...+.++-..+...|. ..-..+...+......+...+..|...-
T Consensus 95 ~~l~~al~~l~~~~e~yP~Lka~~~~~~l~~~l~~~E~~I~~aR~~YN~av 145 (186)
T PF04011_consen 95 AELSQALSRLLAVVENYPELKADENFQQLMAQLEETENRIAAARRAYNDAV 145 (186)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444442 1112344444444444444444444443
No 270
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=30.86 E-value=1.9e+02 Score=20.13 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=31.3
Q ss_pred HHHhhHHHHHHHHHHHHHHhhcCChhH--HHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 027617 40 EIQTGLDEAESLIRKMDLEARSLQPNV--KAVLLAKLREYKSDLNNLKSEVKRLVS 93 (221)
Q Consensus 40 ~i~~~l~~~~~~l~~me~e~~~~~~~~--r~~~~~k~~~~r~~l~~l~~~~~~~~~ 93 (221)
.++..+.+++.++.+|+..=-++..+. -..-..-++.|+..|+..+..+..+..
T Consensus 9 sFEeal~~LEeIV~~LEsgdl~LEesl~lyeeGv~L~k~C~~~L~~AE~kV~~L~~ 64 (95)
T PRK14069 9 SFEDALRELEQIAEKLERQDFSLEESLKAYERGMELKKICSGILDDAEGKIEALTK 64 (95)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355667777777777764322222222 223344557777778877777776653
No 271
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=30.53 E-value=5.8e+02 Score=25.73 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=14.1
Q ss_pred HHHHHHHhHHhhHhHHHHhcchhch
Q 027617 151 GVSILQDLSSQRQSLLHAHNTLHGV 175 (221)
Q Consensus 151 g~~~~~~L~~Qre~l~~~~~~~~~i 175 (221)
-+....+|..+...|....+.+.+.
T Consensus 819 e~~l~~kL~~r~~~l~~ei~~~~d~ 843 (1200)
T KOG0964|consen 819 EANLNTKLYKRVNELEQEIGDLNDS 843 (1200)
T ss_pred HHHHHHHHHhhhhHHHHHhhhcccc
Confidence 3444566666666665555555444
No 272
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.47 E-value=2.5e+02 Score=22.73 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=16.0
Q ss_pred HHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHH
Q 027617 166 LHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWI 199 (221)
Q Consensus 166 ~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~I 199 (221)
+.+.+.+..|..++..+...-.-..-|.++|+.+
T Consensus 156 ~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L 189 (236)
T KOG3287|consen 156 DDIEDSIGTIKNNLNKMWQYQALLRAREARDRNL 189 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3444444444445555544444444455555543
No 273
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=30.46 E-value=3.2e+02 Score=22.78 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=10.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhh
Q 027617 38 VSEIQTGLDEAESLIRKMDLEAR 60 (221)
Q Consensus 38 ~~~i~~~l~~~~~~l~~me~e~~ 60 (221)
+..+...+.++...+..+..++.
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~ 233 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELE 233 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhh
Confidence 33444444455555555444444
No 274
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=30.44 E-value=2.9e+02 Score=27.17 Aligned_cols=57 Identities=23% Similarity=0.349 Sum_probs=39.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhh------cCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 35 KQKVSEIQTGLDEAESLIRKMDLEAR------SLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91 (221)
Q Consensus 35 ~~~~~~i~~~l~~~~~~l~~me~e~~------~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~ 91 (221)
.+...+++..+..++.-+..++.-+. ..|+.....-+.++.++..++..++..+..+
T Consensus 810 ~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l 872 (874)
T PRK05729 810 EAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARL 872 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666666666665554 3577777788888888888888888777654
No 275
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=30.43 E-value=3e+02 Score=22.45 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=38.3
Q ss_pred cChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 29 LDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91 (221)
Q Consensus 29 ~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~ 91 (221)
.++.++..+...+...|+.++.+-+|+..=+.+-....+ ..+..+|.-+..-=..|+..
T Consensus 35 ~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diKdk----~~L~e~Rk~IE~~MErFK~v 93 (233)
T PF04065_consen 35 TNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIKDK----KKLLENRKLIEEQMERFKVV 93 (233)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccH----HHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999998888888766654333323 33555555555433344333
No 276
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.42 E-value=1.8e+02 Score=25.85 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhHhh
Q 027617 67 KAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELL 105 (221)
Q Consensus 67 r~~~~~k~~~~r~~l~~l~~~~~~~~~~~~~~~~r~~Ll 105 (221)
+++|......++.+|++=+.+|++-.... .++-++++
T Consensus 274 k~kyqeEfe~~q~elek~k~efkk~hpd~--~~e~ee~~ 310 (497)
T KOG3838|consen 274 KAKYQEEFEWAQLELEKRKDEFKKSHPDA--QGEGEELF 310 (497)
T ss_pred HHHHHHHHHHHHHHHhhhHhhhccCCchh--hcchhhhh
Confidence 45677777777777777777776654332 33445555
No 277
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=30.31 E-value=61 Score=28.41 Aligned_cols=31 Identities=3% Similarity=0.074 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 188 AMSRRMSRNKWIIGTVVAVLVIAIILILYFK 218 (221)
Q Consensus 188 ~i~rr~~~dk~Il~~ii~il~i~i~~vl~~k 218 (221)
.|.||..+..++=.++++.+++++++++|.+
T Consensus 77 ~~~rrsvrEg~VGlfvL~gi~ll~~~~~~L~ 107 (370)
T PLN03094 77 GFGKRSVWEGGVGLFLLSGAALLALTLAWLR 107 (370)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3667777777766666666665656666654
No 278
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=30.26 E-value=2.6e+02 Score=21.56 Aligned_cols=11 Identities=0% Similarity=0.383 Sum_probs=5.7
Q ss_pred chHHHHHHHHH
Q 027617 2 SDVFERYERQY 12 (221)
Q Consensus 2 s~~f~~ye~e~ 12 (221)
..+|+.|..-+
T Consensus 11 da~w~~~~~sl 21 (165)
T PF09602_consen 11 DAFWKQWSQSL 21 (165)
T ss_pred HHHHHHHHHHH
Confidence 34555555544
No 279
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=30.15 E-value=1.1e+02 Score=19.04 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027617 198 WIIGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~ 219 (221)
+|+.++++..+++..++...++
T Consensus 33 ~Ii~gii~~~~fV~~Lv~lV~~ 54 (56)
T PF11174_consen 33 FIIVGIILAALFVAGLVLLVNL 54 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554443
No 280
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=30.03 E-value=3.1e+02 Score=22.53 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=21.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhc
Q 027617 36 QKVSEIQTGLDEAESLIRKMDLEARS 61 (221)
Q Consensus 36 ~~~~~i~~~l~~~~~~l~~me~e~~~ 61 (221)
.-+..|....++++.++..+|..+..
T Consensus 134 q~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 134 QELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44667778889999999999988876
No 281
>cd00928 Cyt_c_Oxidase_VIIa Cytochrome c oxidase subunit VIIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIIa has two tissue-specific isoforms that are expressed in a developmental manner. VIIa-H is expressed in heart and skeletal muscle but not smooth muscle. VIIa-L is expressed in liver and non-muscle tissues.
Probab=29.94 E-value=1.2e+02 Score=18.76 Aligned_cols=26 Identities=15% Similarity=0.209 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027617 194 SRNKWIIGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 194 ~~dk~Il~~ii~il~i~i~~vl~~k~ 219 (221)
..|+++.-+.+++|++.+++.+|.-|
T Consensus 26 ~~D~~LYr~Tm~L~~vG~~~~~~~l~ 51 (55)
T cd00928 26 VVDRILYRLTMALTVVGTGYSLYLLY 51 (55)
T ss_pred chhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35777777888888888887777643
No 282
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=29.85 E-value=3.1e+02 Score=22.34 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=21.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 38 VSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 38 ~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
++.|...+..++..+++.+.| +......+..+-.+|..++.+...+.
T Consensus 55 LrqI~~DIn~lE~iIkqa~~e--------r~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 55 LRQINQDINTLENIIKQAESE--------RNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555444333 33344444444455555555554443
No 283
>PF10140 YukC: WXG100 protein secretion system (Wss), protein YukC; InterPro: IPR018778 Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This protein is designated YukC in Bacillus subtilis and EssB is Staphylococcus aureus. ; PDB: 4ANN_A.
Probab=29.76 E-value=18 Score=31.56 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027617 191 RRMSRNKWIIGTVVAVLVIAIILILYFKLAK 221 (221)
Q Consensus 191 rr~~~dk~Il~~ii~il~i~i~~vl~~k~~~ 221 (221)
++...-|++.+++++++++++++++|+-|++
T Consensus 189 k~~k~~K~~~i~l~~l~v~l~~~~~Y~~f~~ 219 (359)
T PF10140_consen 189 KKWKIFKYASIGLSILLVLLLIPLGYLYFFK 219 (359)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455667888888888888888888887763
No 284
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=29.59 E-value=96 Score=20.51 Aligned_cols=8 Identities=50% Similarity=0.725 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 027617 210 AIILILYF 217 (221)
Q Consensus 210 ~i~~vl~~ 217 (221)
.+.+++.|
T Consensus 19 p~WL~lHY 26 (75)
T PF06667_consen 19 PIWLILHY 26 (75)
T ss_pred HHHHHHHH
Confidence 33334443
No 285
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=29.51 E-value=2.2e+02 Score=20.64 Aligned_cols=61 Identities=21% Similarity=0.307 Sum_probs=35.3
Q ss_pred ccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 28 SLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91 (221)
Q Consensus 28 ~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~ 91 (221)
..+++++.....++......+.+.+..++.... ++..++ ...++...-..+.....++-.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~y~~~~~~~~~~ 131 (181)
T PF12729_consen 71 ATDPEERQEIEKEIDEARAEIDEALEEYEKLIL--SPEEKQ-LLEEFKEAWKAYRKLRDQVIEL 131 (181)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777788888888888888887764322 333332 3344444444444444444333
No 286
>KOG2736 consensus Presenilin [Signal transduction mechanisms]
Probab=29.48 E-value=71 Score=27.94 Aligned_cols=27 Identities=15% Similarity=0.378 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027617 194 SRNKWIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 194 ~~dk~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
..|.+++..+|+++.++.++..+|||.
T Consensus 70 l~N~li~i~viv~~Tfllv~ly~~rfy 96 (406)
T KOG2736|consen 70 LLNALIMISVIVVMTFLLVVLYKYRFY 96 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678887777777776666666664
No 287
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=29.44 E-value=1.9e+02 Score=20.97 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 195 RNKWIIGTVVAVLVIAIILILYFK 218 (221)
Q Consensus 195 ~dk~Il~~ii~il~i~i~~vl~~k 218 (221)
..|++...+++..+++.++++|.+
T Consensus 36 ~EKvly~~~~va~L~vai~ii~~q 59 (120)
T COG4839 36 VEKVLYTTLAVAALVVAISIISVQ 59 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367776666666555555666653
No 288
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=29.36 E-value=1.9e+02 Score=19.92 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhcc--------Ch-----HHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 027617 5 FERYERQYCEISANLSKKCTAAASL--------DG-----ERKKQKVSEIQTGLDEAESLIRKMDLEAR 60 (221)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~~~~--------~~-----~~~~~~~~~i~~~l~~~~~~l~~me~e~~ 60 (221)
|-+--++++.-+..|+..+..+... ++ +.-......+.....++...|+.|+....
T Consensus 6 F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~ 74 (117)
T smart00503 6 FFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENL 74 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3344555666666666656555221 11 12235566667777777777777776554
No 289
>PHA02655 hypothetical protein; Provisional
Probab=29.17 E-value=34 Score=22.25 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 027617 202 TVVAVLVIAIILILYFKLAK 221 (221)
Q Consensus 202 ~ii~il~i~i~~vl~~k~~~ 221 (221)
++|+...+++++++|.|++|
T Consensus 72 fvivmisciflviiyikyhk 91 (94)
T PHA02655 72 FVIVMISCIFLVIIYIKYHK 91 (94)
T ss_pred HHHHHHHHHHhhheeeeecc
Confidence 45555555566667766653
No 290
>COG3116 FtsL Cell division protein [Cell division and chromosome partitioning]
Probab=29.16 E-value=67 Score=22.59 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027617 195 RNKWIIGTVVAVLVIAIILIL 215 (221)
Q Consensus 195 ~dk~Il~~ii~il~i~i~~vl 215 (221)
.+|+.+++.+++++.++++|+
T Consensus 20 ~~kl~l~LLi~ivlsAi~vv~ 40 (105)
T COG3116 20 SGKLPLLLLIAIVLSAIGVVY 40 (105)
T ss_pred cCcHHHHHHHHHHHHHHHHHH
Confidence 457777777777777776554
No 291
>KOG3046 consensus Transcription factor, subunit of SRB subcomplex of RNA polymerase II [Transcription]
Probab=29.12 E-value=2.5e+02 Score=21.04 Aligned_cols=56 Identities=18% Similarity=0.372 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 027617 31 GERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKS 86 (221)
Q Consensus 31 ~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~ 86 (221)
-++-...+..++..+.+.-+.+-++-.-+.+.+|.....+.+++...-..+..+-+
T Consensus 7 ~~q~~ekl~~l~~~le~~~e~~~~Lgl~vs~F~~tsq~~L~qrl~tLv~~L~~l~~ 62 (147)
T KOG3046|consen 7 NDQMQEKLAQLENSLEKFLENFRQLGLIVSNFQPTSQDALNQRLNTLVRGLQDLDK 62 (147)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcHHHHHHHHHHHHHHhhhhHH
Confidence 34556677788888888889999999999999887777888888777666555443
No 292
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=29.05 E-value=90 Score=30.92 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 184 KVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 184 ~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl~~ 217 (221)
+....|--+.++-.+|++++|+|+++++++++|.
T Consensus 1060 K~~~~i~W~~yr~~il~~l~ililll~l~~fly~ 1093 (1105)
T KOG1326|consen 1060 KSFKFILWHRYRWYILLLLLILILLLLLALFLYS 1093 (1105)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677777777778787777777777777664
No 293
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=28.99 E-value=1.8e+02 Score=19.41 Aligned_cols=7 Identities=14% Similarity=0.188 Sum_probs=2.5
Q ss_pred HHHHhcc
Q 027617 165 LLHAHNT 171 (221)
Q Consensus 165 l~~~~~~ 171 (221)
+..++.+
T Consensus 60 ~~dv~~k 66 (90)
T PF06103_consen 60 LEDVNEK 66 (90)
T ss_pred HHHHHHH
Confidence 3333333
No 294
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=28.97 E-value=1.7e+02 Score=26.55 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=33.8
Q ss_pred HHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 153 SILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFK 218 (221)
Q Consensus 153 ~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl~~k 218 (221)
+++..++.-.+.+..-. ..-...+..+++..+.|..|+...++.-..++++++++++.+++|-
T Consensus 222 ~Tl~sfr~~Nee~~~k~---~~~~~~lk~~dk~Ck~il~K~~~~~c~w~~l~llllvliaG~l~yD 284 (469)
T PF10151_consen 222 ETLKSFRLKNEELLKKG---KAKDESLKECDKACKVILGKMSGSSCPWTRLLLLLLVLIAGFLAYD 284 (469)
T ss_pred HHHHHHHHhHHHHHhcc---ccchHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHh
Confidence 34445555555442211 1233456778888888888877766544443344444444555554
No 295
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=28.93 E-value=60 Score=22.38 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027617 198 WIIGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~ 219 (221)
.|-+.+|+.++++|++.-+|.+
T Consensus 60 ~is~a~i~alViaIY~YTfYSi 81 (108)
T KOG4782|consen 60 HISFAGIGALVIAIYGYTFYSI 81 (108)
T ss_pred hhhhHHHHHHHHHhhhheeeeh
Confidence 5666677777777766655543
No 296
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=28.78 E-value=1e+02 Score=16.53 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027617 198 WIIGTVVAVLVIAIILI 214 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~v 214 (221)
+|+.+.+++++.++..+
T Consensus 6 WilG~~lA~~~~v~~a~ 22 (30)
T TIGR02106 6 WILGTLLACAFGVLNAM 22 (30)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55655555555554433
No 297
>PTZ00464 SNF-7-like protein; Provisional
Probab=28.75 E-value=3.1e+02 Score=21.99 Aligned_cols=47 Identities=6% Similarity=0.100 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHH
Q 027617 143 TMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMS 190 (221)
Q Consensus 143 ~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~ 190 (221)
.+.++-..|..+|..++.+= .+..+.+-++++...+..++.+=..+.
T Consensus 102 ~vv~amk~g~kaLK~~~k~i-~id~Vd~l~Dei~E~~e~~~EI~e~Ls 148 (211)
T PTZ00464 102 VQVDAMKQAAKTLKKQFKKL-NVDKVEDLQDELADLYEDTQEIQEIMG 148 (211)
T ss_pred HHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666666664 456666655666555555555444443
No 298
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.72 E-value=2e+02 Score=22.98 Aligned_cols=56 Identities=14% Similarity=0.307 Sum_probs=42.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 027617 38 VSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVS 93 (221)
Q Consensus 38 ~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~ 93 (221)
..+++..++....-.+.|+.-+..+..-....++..+..+++++..+-..|..+..
T Consensus 7 ~~~VE~kid~f~~F~k~Md~sv~~l~~~~~e~~kk~~~~~KkEyqkiG~af~~Lsq 62 (207)
T cd07670 7 LQDVESRIDGFKAFTKKMDESVLQLNHTANEFARKQVTGFKKEYQKVGQSFKGLSQ 62 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 45778888888888888888877665544456777778888888888888877653
No 299
>PF14899 DUF4492: Domain of unknown function (DUF4492)
Probab=28.70 E-value=1e+02 Score=19.73 Aligned_cols=21 Identities=5% Similarity=0.206 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027617 199 IIGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 199 Il~~ii~il~i~i~~vl~~k~ 219 (221)
.+|.||++=++++++|+-.-|
T Consensus 20 tLW~IIliKLfImF~vLK~Ff 40 (64)
T PF14899_consen 20 TLWLIILIKLFIMFAVLKLFF 40 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578888887777666664433
No 300
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=28.64 E-value=4.1e+02 Score=23.41 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=9.2
Q ss_pred HHHHHHhhHHHHHHHHHHH
Q 027617 37 KVSEIQTGLDEAESLIRKM 55 (221)
Q Consensus 37 ~~~~i~~~l~~~~~~l~~m 55 (221)
.+..+...+.+++.-+..+
T Consensus 255 ~i~~l~~~l~~le~~l~~l 273 (444)
T TIGR03017 255 IIQNLKTDIARAESKLAEL 273 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555444444
No 301
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=28.64 E-value=4.2e+02 Score=23.53 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHh
Q 027617 206 VLVIAIILILYFKL 219 (221)
Q Consensus 206 il~i~i~~vl~~k~ 219 (221)
++++++++++|.+|
T Consensus 379 ~~~v~l~~~~~~~w 392 (395)
T PF10267_consen 379 LLLVGLGAILWQNW 392 (395)
T ss_pred HHHHHHHHHHHhcc
Confidence 33444445555554
No 302
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=28.61 E-value=24 Score=25.25 Aligned_cols=7 Identities=29% Similarity=0.852 Sum_probs=3.4
Q ss_pred HHHHHHH
Q 027617 211 IILILYF 217 (221)
Q Consensus 211 i~~vl~~ 217 (221)
++||||.
T Consensus 75 iffviy~ 81 (150)
T PF06084_consen 75 IFFVIYS 81 (150)
T ss_pred HhheeEe
Confidence 3455554
No 303
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=28.54 E-value=3.5e+02 Score=22.60 Aligned_cols=54 Identities=15% Similarity=0.283 Sum_probs=35.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 38 VSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 38 ~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
.+.+...+..+...+.++...+.++... -..+..|+..-+.+++..++.+..++
T Consensus 164 E~~l~~ai~~~~~~~~~~~~~l~~l~~d-e~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 164 EKALKEAIKAVQQQLQQTQQQLNNLASD-EANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666554432 35788888888888888888887776
No 304
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=28.30 E-value=1.3e+02 Score=21.81 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCh
Q 027617 32 ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQP 64 (221)
Q Consensus 32 ~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~ 64 (221)
+...+.+.+++..++.++.-+.+||.-+-+-..
T Consensus 80 ~~~~~~l~~~~~~~~~~e~Rl~~mE~yVTS~~f 112 (121)
T TIGR02978 80 QSPRQALREVKREFRDLERRLRNMERYVTSDTF 112 (121)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 345677888888899999888888888766443
No 305
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=28.23 E-value=1.4e+02 Score=19.48 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027617 189 MSRRMSRNKWIIGTVVAV 206 (221)
Q Consensus 189 i~rr~~~dk~Il~~ii~i 206 (221)
..||-+..-+++.+..++
T Consensus 9 Y~rrSr~~efLF~ilfIv 26 (72)
T PF13198_consen 9 YPRRSRKTEFLFFILFIV 26 (72)
T ss_pred ccchhHHHHHHHHHHHHH
Confidence 445555554444433333
No 306
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=28.04 E-value=1.6e+02 Score=20.27 Aligned_cols=38 Identities=32% Similarity=0.287 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027617 183 KKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 183 ~~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
..-+++|..=..+||.-+.++-++..++-++.+.++++
T Consensus 55 ~~k~k~~~~FV~RNk~W~T~~S~~tS~isIL~LV~~~~ 92 (100)
T PF06363_consen 55 KNKMKSMLSFVERNKAWFTVVSAVTSFISILLLVTKIF 92 (100)
T ss_pred HHHHHHHHHHHHHcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 34456666667778765555555544444444444444
No 307
>PF15125 TMEM238: TMEM238 protein family
Probab=28.02 E-value=1.2e+02 Score=19.45 Aligned_cols=26 Identities=0% Similarity=0.137 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 193 MSRNKWIIGTVVAVLVIAIILILYFK 218 (221)
Q Consensus 193 ~~~dk~Il~~ii~il~i~i~~vl~~k 218 (221)
..-|-++-.+.+++++-++++|+||.
T Consensus 30 ~f~D~lvY~GaliiflSL~~Wv~WYt 55 (65)
T PF15125_consen 30 DFYDFLVYTGALIIFLSLLWWVFWYT 55 (65)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 55666666677777777788888875
No 308
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=27.97 E-value=31 Score=30.46 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 027617 201 GTVVAVLVIAIILILYFKLAK 221 (221)
Q Consensus 201 ~~ii~il~i~i~~vl~~k~~~ 221 (221)
..+|+|+..+++|+.||-+.|
T Consensus 374 vavvvvVgglvGfLcWwf~cr 394 (397)
T PF03302_consen 374 VAVVVVVGGLVGFLCWWFICR 394 (397)
T ss_pred ehhHHHHHHHHHHHhhheeec
Confidence 455556666666666664543
No 309
>PF02238 COX7a: Cytochrome c oxidase subunit VIIa; InterPro: IPR003177 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. This family is composed of the heart and liver isoforms of cytochrome c oxidase subunit VIIa. ; GO: 0004129 cytochrome-c oxidase activity, 0009055 electron carrier activity, 0005746 mitochondrial respiratory chain; PDB: 2DYS_J 3AG3_W 3AG1_J 1OCC_J 3ABL_J 3AG4_J 3ABM_J 2EIL_W 3AG2_W 2EIM_W ....
Probab=27.85 E-value=1.4e+02 Score=18.50 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 194 SRNKWIIGTVVAVLVIAIILILYFK 218 (221)
Q Consensus 194 ~~dk~Il~~ii~il~i~i~~vl~~k 218 (221)
..|.++.-+.+.++++..++.+|..
T Consensus 24 ~~D~~Ly~~Tm~L~~~gt~~~l~~l 48 (56)
T PF02238_consen 24 YMDDILYRVTMPLTVAGTSYCLYGL 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666543
No 310
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=27.75 E-value=4.6e+02 Score=23.70 Aligned_cols=77 Identities=14% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHH
Q 027617 6 ERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLK 85 (221)
Q Consensus 6 ~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~ 85 (221)
+.++.........++..++++...+.++ .++..++.+...++.++.+.+..-...-.....--.....++..|.
T Consensus 380 ~~~~~~~q~~E~~Ld~~~d~lRq~s~ee------~L~~~l~~~~~~Ld~Ie~~Y~~fh~~~~~~~~~yP~~i~~e~~~Y~ 453 (473)
T PF14643_consen 380 EKHDQENQEKEAKLDIALDRLRQASSEE------KLKEHLEKALDLLDQIEEEYEDFHKKQTAIVMEYPEMILKELESYS 453 (473)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 027617 86 SEV 88 (221)
Q Consensus 86 ~~~ 88 (221)
..+
T Consensus 454 ~~l 456 (473)
T PF14643_consen 454 ESL 456 (473)
T ss_pred HHH
No 311
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=27.70 E-value=3.2e+02 Score=21.88 Aligned_cols=10 Identities=30% Similarity=0.418 Sum_probs=6.3
Q ss_pred hhhhhHhhhc
Q 027617 98 AAARDELLES 107 (221)
Q Consensus 98 ~~~r~~Ll~~ 107 (221)
+++-.+||..
T Consensus 73 QrEvn~LLqR 82 (207)
T PF05546_consen 73 QREVNELLQR 82 (207)
T ss_pred HHHHHHHHhc
Confidence 3456677765
No 312
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=27.66 E-value=72 Score=24.04 Aligned_cols=11 Identities=27% Similarity=0.211 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 027617 193 MSRNKWIIGTV 203 (221)
Q Consensus 193 ~~~dk~Il~~i 203 (221)
-+.+|+|+.+.
T Consensus 116 gY~nklilais 126 (154)
T PF14914_consen 116 GYNNKLILAIS 126 (154)
T ss_pred cccchhHHHHH
Confidence 34556666533
No 313
>PTZ00087 thrombosponding-related protein; Provisional
Probab=27.56 E-value=51 Score=27.48 Aligned_cols=20 Identities=20% Similarity=0.610 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027617 199 IIGTVVAVLVIAIILILYFK 218 (221)
Q Consensus 199 Il~~ii~il~i~i~~vl~~k 218 (221)
++-+|+++++++|++-+|||
T Consensus 302 ~~piv~vi~v~~ily~ify~ 321 (340)
T PTZ00087 302 LLPIVLIICVMGILYHIFYK 321 (340)
T ss_pred ehhHHHHHHHHHHHHHHhhh
Confidence 34456666666666666665
No 314
>PRK10772 cell division protein FtsL; Provisional
Probab=27.42 E-value=1.7e+02 Score=20.87 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=15.5
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 027617 189 MSRRMSR-NKWIIGTVVAVLVIAIILI 214 (221)
Q Consensus 189 i~rr~~~-dk~Il~~ii~il~i~i~~v 214 (221)
|..=... +|+.+.+++++++.++++|
T Consensus 15 I~~Dl~~~~kl~l~Ll~~vv~SAl~VV 41 (108)
T PRK10772 15 IGDDLLRNGKLPLCLFIAVIVSAVTVV 41 (108)
T ss_pred HHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 3333444 6777777777776666543
No 315
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.11 E-value=62 Score=27.30 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=10.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHH
Q 027617 36 QKVSEIQTGLDEAESLIRKMD 56 (221)
Q Consensus 36 ~~~~~i~~~l~~~~~~l~~me 56 (221)
....+++..+.+++..++++.
T Consensus 61 d~~~ev~~~l~rvrrk~~eLg 81 (305)
T KOG0809|consen 61 DVAEEVDYYLSRVRRKIDELG 81 (305)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555543
No 316
>PLN02943 aminoacyl-tRNA ligase
Probab=27.04 E-value=3.9e+02 Score=26.71 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=40.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhc------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 36 QKVSEIQTGLDEAESLIRKMDLEARS------LQPNVKAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 36 ~~~~~i~~~l~~~~~~l~~me~e~~~------~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
+...+++..++.++.-+..++..+.+ .|+.....-..|++++..++..++..+..+.
T Consensus 889 ~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~ 951 (958)
T PLN02943 889 AEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLK 951 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556667777777777776666553 5667777788888888888888888776654
No 317
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=26.87 E-value=67 Score=26.62 Aligned_cols=18 Identities=0% Similarity=0.196 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027617 198 WIIGTVVAVLVIAIILIL 215 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl 215 (221)
|+.|++|+++++++++++
T Consensus 202 ~f~wl~i~~~l~~~~Y~i 219 (268)
T PF09451_consen 202 FFTWLFIILFLFLAAYLI 219 (268)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344444444444433433
No 318
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=26.83 E-value=1.2e+02 Score=29.26 Aligned_cols=69 Identities=22% Similarity=0.310 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027617 144 MLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 144 ~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
-.+.+..+.+++.++..+-.... +...+....-+...|..-+.....+..++.+++++++++++|.++.
T Consensus 525 ~~~~~~~~~~~~~~i~~~~~~~g--------v~~~vtG~~vi~~~m~~~i~~sq~~~t~l~~~~V~~ll~i~fRs~~ 593 (727)
T COG1033 525 QGELEDVGREILRDIEKENIPTG--------VKVYVTGESVIYVEMNELLTSSQLISTVLGIILVFALLLIIFRSPL 593 (727)
T ss_pred hhHHHHHHHHHHHHHHhhcCCCC--------cEEEEcCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhchH
Confidence 34566666666666665544433 2234445556677788888888888888888888888888887764
No 319
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=26.81 E-value=91 Score=24.32 Aligned_cols=28 Identities=18% Similarity=0.502 Sum_probs=14.5
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 027617 189 MSRRMSRNK-WIIGTVVAVLVIAIILILY 216 (221)
Q Consensus 189 i~rr~~~dk-~Il~~ii~il~i~i~~vl~ 216 (221)
...+.-+++ ++.+++++++++++++++|
T Consensus 29 W~~ls~REq~ll~~~g~vL~l~i~Y~~iW 57 (178)
T PRK09731 29 LAGRSPREKGMLLAAVVFLFSVGYYVLIW 57 (178)
T ss_pred HccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444 4445555555555555555
No 320
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=26.52 E-value=1.7e+02 Score=22.19 Aligned_cols=31 Identities=23% Similarity=0.421 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 183 KKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 183 ~~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl~~ 217 (221)
..+-.+|.|| -.+++++=.++.++++.+.|+
T Consensus 55 ~~Vs~RM~rR----m~~~~GiP~~lG~~~f~~~y~ 85 (153)
T PF11947_consen 55 EVVSNRMLRR----MAVFVGIPTALGVAVFVVFYY 85 (153)
T ss_pred HHHHHHHHHH----HHHHhchHHHHHHHHHHHHHH
Confidence 3455555555 356666666666666555555
No 321
>PF12008 EcoR124_C: Type I restriction and modification enzyme - subunit R C terminal; InterPro: IPR022625 EcoR124 is made up of three subunits, HsdR, HsdS and HsdM. The R subunit has ATPase and restriction endonuclease activity. The enzyme has been characterised and shown to belong to a new family of the type I class of restriction and modification enzymes. These enzymes are involved in bacterial defence by making double strand breaks in specific double stranded DNA sequences, e.g. that of invading bacteriophages. This entry represents the domain found in the C terminus of Type I restriction and modification enzymes. The domain is found in association with PF04851 from PFAM and PF04313 from PFAM. []. ; PDB: 2Y3T_B 2W74_B 3EVY_B 2W00_B.
Probab=26.35 E-value=2.1e+02 Score=23.34 Aligned_cols=88 Identities=15% Similarity=0.249 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH---hHhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHH-HHHHHHHHHH
Q 027617 3 DVFERYERQYCEISANLSKKC---TAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKA-VLLAKLREYK 78 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l---~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~-~~~~k~~~~r 78 (221)
.-|+.|..+|...+.+|.... +.+....+++.+..+.++-..+..+.+.++.+.- ... +...-. .-...+..|+
T Consensus 5 ~~y~e~~~~f~~~v~~L~~~~~~~~~~~~l~~e~~~~~Fvk~F~~~~~~~~~lk~y~e-fd~-d~~~~~~~~~~~~~dy~ 82 (270)
T PF12008_consen 5 PSYEEYKEEFKEAVEELKEIFPTPGDFDDLESEEEQKEFVKLFRELNRLLNALKQYDE-FDE-DDEELGFLSEQEFEDYQ 82 (270)
T ss_dssp -HHHHHHHHEEHHHHHHHHH--SSHHHCTS-SHHHHHHHHHHHHHHHHHHHHHTTSHH-HH---HHHHHHS-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCccchhccCCHHHHHHHHHHHHHHHHHHHHHhccch-hcc-chhhhcccchhHHHHHH
Confidence 458899999999999998877 4344454555555555555555555555555443 110 100000 2234456666
Q ss_pred HHHHHHHHHHHHHH
Q 027617 79 SDLNNLKSEVKRLV 92 (221)
Q Consensus 79 ~~l~~l~~~~~~~~ 92 (221)
..+..+..+++...
T Consensus 83 ~~Y~~l~~~~k~~~ 96 (270)
T PF12008_consen 83 SKYLDLYDELKEER 96 (270)
T ss_dssp HHHHHHHHCHCHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 66666666665544
No 322
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=26.26 E-value=91 Score=23.95 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 027617 201 GTVVAVLVIAIILILY 216 (221)
Q Consensus 201 ~~ii~il~i~i~~vl~ 216 (221)
|++++++.++++++++
T Consensus 99 ~Vl~g~s~l~i~yfvi 114 (163)
T PF06679_consen 99 YVLVGLSALAILYFVI 114 (163)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 323
>PF10808 DUF2542: Protein of unknown function (DUF2542) ; InterPro: IPR020155 This entry represents transmembrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=25.96 E-value=49 Score=21.82 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 027617 198 WIIGTVVAVLVIAIILILYFKLAK 221 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~~~ 221 (221)
+++|++++++.++ .++|+-|.|
T Consensus 58 i~~Y~G~gil~~g--m~IyllFyR 79 (79)
T PF10808_consen 58 IFAYFGCGILSLG--MIIYLLFYR 79 (79)
T ss_pred HHHHHHHHHHHHH--HhheeEEeC
Confidence 4556666665544 566665554
No 324
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=25.94 E-value=82 Score=29.66 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027617 198 WIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~ 217 (221)
+|+++||+++.++|.+++|.
T Consensus 395 ~~f~~if~iva~ii~~~L~R 414 (807)
T KOG1094|consen 395 IIFVAIFLIVALIIALMLWR 414 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665
No 325
>PRK11820 hypothetical protein; Provisional
Probab=25.72 E-value=4.1e+02 Score=22.41 Aligned_cols=38 Identities=16% Similarity=0.234 Sum_probs=24.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHH
Q 027617 130 VNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHA 168 (221)
Q Consensus 130 l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~ 168 (221)
++++.+.| .|+..-.+.-..+.++-..|..=|||++++
T Consensus 250 m~RE~NTi-gSKs~~~~is~~vVe~K~elEkiREQVQNI 287 (288)
T PRK11820 250 LNREANTL-GSKSNDAEITNLVVELKVLIEQMREQVQNI 287 (288)
T ss_pred HhHHHHHH-HHccCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44444444 345555667777777777777778877764
No 326
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=25.69 E-value=87 Score=25.27 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027617 197 KWIIGTVVAVLVIAIILIL 215 (221)
Q Consensus 197 k~Il~~ii~il~i~i~~vl 215 (221)
++|++.++++++++++.+-
T Consensus 187 W~i~~~v~~i~~i~vv~i~ 205 (226)
T PHA02662 187 WTLLLAVAAVTVLGVVAVS 205 (226)
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 3444455536655555443
No 327
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=25.42 E-value=7.2e+02 Score=25.16 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhHhhhcc
Q 027617 67 KAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESG 108 (221)
Q Consensus 67 r~~~~~k~~~~r~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~~ 108 (221)
+..+.+.+..+..+-+..++....+..++.--.+-..+||..
T Consensus 908 ~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~ 949 (1174)
T KOG0933|consen 908 RKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKK 949 (1174)
T ss_pred HHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCC
Confidence 566777777777777777777766655443223445778754
No 328
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.24 E-value=2.8e+02 Score=20.37 Aligned_cols=8 Identities=25% Similarity=0.393 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 027617 45 LDEAESLI 52 (221)
Q Consensus 45 l~~~~~~l 52 (221)
|.++...+
T Consensus 59 L~eI~~~l 66 (134)
T cd04779 59 LAEIKDQL 66 (134)
T ss_pred HHHHHHHH
Confidence 33443333
No 329
>PHA02562 46 endonuclease subunit; Provisional
Probab=25.23 E-value=5.2e+02 Score=23.51 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=7.7
Q ss_pred chhhhHHHHHHHHHHHHHH
Q 027617 174 GVDDNVSKSKKVLTAMSRR 192 (221)
Q Consensus 174 ~i~~~l~~s~~~l~~i~rr 192 (221)
.+...+...+.-+..+.+.
T Consensus 383 ~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 383 KLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333
No 330
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=25.19 E-value=3.1e+02 Score=22.14 Aligned_cols=46 Identities=17% Similarity=0.301 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 027617 49 ESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 94 (221)
Q Consensus 49 ~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~~ 94 (221)
......+...+..+.|..++.|...++.|..++..+...++..-..
T Consensus 102 ~~~~~~Ia~~L~~~~P~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~ 147 (256)
T PF01297_consen 102 KKMAEAIADALSELDPANKDYYEKNAEKYLKELDELDAEIKEKLAK 147 (256)
T ss_dssp HHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333444444444578888899999999999999999998776543
No 331
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=25.16 E-value=1.8e+02 Score=18.09 Aligned_cols=22 Identities=5% Similarity=0.271 Sum_probs=10.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHhh
Q 027617 39 SEIQTGLDEAESLIRKMDLEAR 60 (221)
Q Consensus 39 ~~i~~~l~~~~~~l~~me~e~~ 60 (221)
.++...+..+..-+.+|..++.
T Consensus 6 d~Ls~dVq~L~~kvdqLs~dv~ 27 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSSDVN 27 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 332
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=24.93 E-value=4.1e+02 Score=22.13 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhc-cChHHHHHHHHHHHh
Q 027617 4 VFERYERQYCEISANLSKKCTAAAS-LDGERKKQKVSEIQT 43 (221)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~i~~ 43 (221)
.|+.|.+.++....+....+...++ ..+++-+.+.++++.
T Consensus 200 ~~ee~K~slr~ir~~~~kk~~k~~~~~~~D~vkkae~~l~~ 240 (263)
T KOG4759|consen 200 YFEEYKQSLRKIRTKSIKKSKKNKKSLSEDEVKKAEAELQK 240 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHH
Confidence 4667777777666666665555544 445544444444443
No 333
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=24.89 E-value=93 Score=28.75 Aligned_cols=24 Identities=17% Similarity=0.204 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 027617 198 WIIGTVVAVLVIAIILILYFKLAK 221 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~~~ 221 (221)
++.++++++++++++|++|.++.|
T Consensus 440 ~~~~~~~~l~~l~l~~~v~rp~~~ 463 (542)
T PRK06007 440 LIKLAAGALLILILIFFVLRPRLR 463 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555666666666777776543
No 334
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.80 E-value=2.2e+02 Score=19.01 Aligned_cols=49 Identities=18% Similarity=0.032 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhHhh--ccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 027617 12 YCEISANLSKKCTAAA--SLDGERKKQKVSEIQTGLDEAESLIRKMDLEAR 60 (221)
Q Consensus 12 ~~~~~~~i~~~l~~~~--~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~ 60 (221)
|...+..|..++.++. ..+.++.-..+.+.-..++.++..|...+..+.
T Consensus 9 fEeal~~LEeIV~~LE~~~l~Lees~~lyeeG~~L~k~C~~~L~~ae~kI~ 59 (80)
T PRK14067 9 FEQQLARLQEIVDALEGGDLPLEESVALYKEGLGLARACREQLAKARNEIR 59 (80)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777774 344566666666666666666666666555443
No 335
>MTH00260 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=24.75 E-value=1.6e+02 Score=17.96 Aligned_cols=20 Identities=0% Similarity=0.117 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027617 198 WIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~ 217 (221)
+++++.+.++++++...+|+
T Consensus 10 ~~l~~~f~~~~~~~~~~~~~ 29 (53)
T MTH00260 10 LTAMIIFWFILLIFASSMWW 29 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444445554
No 336
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=24.65 E-value=2.2e+02 Score=19.09 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027617 183 KKVLTAMSRRMSRNKWIIGTV 203 (221)
Q Consensus 183 ~~~l~~i~rr~~~dk~Il~~i 203 (221)
...-+.|.+...++|.+++..
T Consensus 40 k~~d~~i~kK~k~kK~iiiS~ 60 (84)
T PF09716_consen 40 KKIDDKIEKKKKNKKKIIIST 60 (84)
T ss_pred hhhhHHHHHHHhccchhhHHH
Confidence 344477777777777766533
No 337
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=24.62 E-value=3.8e+02 Score=21.69 Aligned_cols=51 Identities=22% Similarity=0.316 Sum_probs=29.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 38 VSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91 (221)
Q Consensus 38 ~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~ 91 (221)
+......++.++..++.++..+...+. .....++...+..+..+++.+...
T Consensus 120 ~~~~~~~l~~l~~~l~~le~~~~~~~~---~~~~~~l~~l~~~l~~l~~~l~~~ 170 (292)
T PF01544_consen 120 VDDYFEVLEELEDELDELEDELDDRPS---NELLRELFDLRRELSRLRRSLSPL 170 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHTTT---HHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccc---hhhHHHHHHHHHHHHHHHHHhhhH
Confidence 345555666666666666666633332 244455556666666666666543
No 338
>PRK10807 paraquat-inducible protein B; Provisional
Probab=24.57 E-value=5.7e+02 Score=23.71 Aligned_cols=45 Identities=13% Similarity=0.222 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 027617 13 CEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEAR 60 (221)
Q Consensus 13 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~ 60 (221)
..+.+++...++++...+-+ +.+.+++..|.+++..+.+++..+.
T Consensus 416 ~~l~~~~~~il~kin~lple---~i~~~l~~tL~~~~~tl~~l~~~l~ 460 (547)
T PRK10807 416 AQIQQKLMEALDKINNLPLN---PMIEQATSTLSESQRTMRELQTTLD 460 (547)
T ss_pred HHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666655433 2444566666666666666665554
No 339
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=24.56 E-value=2.2e+02 Score=18.95 Aligned_cols=59 Identities=8% Similarity=0.200 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 027617 30 DGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVS 93 (221)
Q Consensus 30 ~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~ 93 (221)
++.+-......+..+|+.|...+..|.- +..+ -..+...+++++..+...+.-+.++..
T Consensus 22 ~~kd~~~~~~~lk~Klq~ar~~i~~lpg----i~~s-~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 22 SSKDLDTATGSLKHKLQKARAAIRELPG----IDRS-VEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCC----ccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566777777777777766543 1111 245666677777777766666666554
No 340
>PF05115 PetL: Cytochrome B6-F complex subunit VI (PetL); InterPro: IPR007802 This family consists of several Cytochrome B6-F complex subunit VI (PetL) proteins found in a number of plant species. PetL is one of the small subunits which make up the cytochrome b(6)f complex. PetL is not absolutely required for either the accumulation or for the function of cytochrome b6f; in its absence, however, the complex becomes unstable in vivo in aging cells and labile in vitro. It has been suggested that the N terminus of the protein is likely to lie in the thylakoid lumen [].; GO: 0009055 electron carrier activity, 0009512 cytochrome b6f complex; PDB: 2ZT9_E 1Q90_L.
Probab=24.54 E-value=1.3e+02 Score=16.28 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027617 198 WIIGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~ 219 (221)
++-|+++++..+++..++|..+
T Consensus 4 iisYf~fL~~al~~t~~lfiGL 25 (31)
T PF05115_consen 4 IISYFGFLLAALTLTLVLFIGL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666665555556665543
No 341
>PHA02955 hypothetical protein; Provisional
Probab=24.45 E-value=95 Score=24.90 Aligned_cols=19 Identities=0% Similarity=-0.039 Sum_probs=10.2
Q ss_pred HHHHHHhhcCChhHHHHHH
Q 027617 53 RKMDLEARSLQPNVKAVLL 71 (221)
Q Consensus 53 ~~me~e~~~~~~~~r~~~~ 71 (221)
+.+.--...+|+.+|...-
T Consensus 68 ~a~~Et~~~Lp~~qk~~ia 86 (213)
T PHA02955 68 EALIETIENFPEKEQKEIA 86 (213)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 3333333556877776653
No 342
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=24.41 E-value=5.1e+02 Score=23.13 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027617 70 LLAKLREYKSDLNNLKSEVKRL 91 (221)
Q Consensus 70 ~~~k~~~~r~~l~~l~~~~~~~ 91 (221)
+......+...++.+..++..+
T Consensus 380 l~~~~~~l~~~~~~l~~~~~~l 401 (451)
T PF03961_consen 380 LKEKKKELKEELKELKEELKEL 401 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 343
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.39 E-value=5.1e+02 Score=23.10 Aligned_cols=29 Identities=10% Similarity=0.133 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhccChHH
Q 027617 5 FERYERQYCEISANLSKKCTAAASLDGER 33 (221)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~~~~~~~~ 33 (221)
-+.|.+||.....++...=...++..|+.
T Consensus 274 k~kyqeEfe~~q~elek~k~efkk~hpd~ 302 (497)
T KOG3838|consen 274 KAKYQEEFEWAQLELEKRKDEFKKSHPDA 302 (497)
T ss_pred HHHHHHHHHHHHHHHhhhHhhhccCCchh
Confidence 34788888888888888777777766653
No 344
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=24.39 E-value=93 Score=24.97 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=7.6
Q ss_pred HhhcCChhHHHHH
Q 027617 58 EARSLQPNVKAVL 70 (221)
Q Consensus 58 e~~~~~~~~r~~~ 70 (221)
-...+|+.+|...
T Consensus 73 t~~~Lp~~qk~~i 85 (215)
T PHA02947 73 VISTLPEKERREL 85 (215)
T ss_pred HHHhCCHHHHHHH
Confidence 3345677766555
No 345
>PRK02224 chromosome segregation protein; Provisional
Probab=24.30 E-value=6.7e+02 Score=24.45 Aligned_cols=179 Identities=13% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhccCh--HHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHH
Q 027617 5 FERYERQYCEISANLSKKCTAAASLDG--ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLN 82 (221)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~~~~~~--~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~ 82 (221)
++.+.+++..+..++............ .+-...+..+...+.++..-+..++ ++..+..... .+...+..++..+.
T Consensus 539 ~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~-~~~~~~~~~~~~~~ 616 (880)
T PRK02224 539 AEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIA-DAEDEIERLREKRE 616 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHccccchhhhhHhhhccccCcccccHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 027617 83 NLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQR 162 (221)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~r~~Ll~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qr 162 (221)
.++..-..+........++-+=+...+ +......+....+.+...-..+......+.+....-..-+..+..+-
T Consensus 617 ~l~~~~~~~~~~l~~~r~~i~~l~~~~------~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~ 690 (880)
T PRK02224 617 ALAELNDERRERLAEKRERKRELEAEF------DEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENEL 690 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHhcchhchhhhHHHHHHHHHHHHH
Q 027617 163 QSLLHAHNTLHGVDDNVSKSKKVLTAMSR 191 (221)
Q Consensus 163 e~l~~~~~~~~~i~~~l~~s~~~l~~i~r 191 (221)
+.+.....++..+...+.....+......
T Consensus 691 e~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 719 (880)
T PRK02224 691 EELEELRERREALENRVEALEALYDEAEE 719 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 346
>PRK11901 hypothetical protein; Reviewed
Probab=24.24 E-value=1e+02 Score=26.46 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027617 197 KWIIGTVVAVLVIAIILI 214 (221)
Q Consensus 197 k~Il~~ii~il~i~i~~v 214 (221)
.+.+.++|+||+++|+.|
T Consensus 37 h~MiGiGilVLlLLIi~I 54 (327)
T PRK11901 37 HMMIGIGILVLLLLIIAI 54 (327)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555554433
No 347
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=24.20 E-value=52 Score=19.00 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027617 197 KWIIGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 197 k~Il~~ii~il~i~i~~vl~~k~ 219 (221)
.-++|+++++++=.++.++|+-+
T Consensus 21 ~k~~W~~~i~~~P~iG~i~Yl~~ 43 (46)
T PF13396_consen 21 SKILWLIVILFFPIIGPILYLIF 43 (46)
T ss_pred hhhHHHHHHHHHHHHHHhheEEE
Confidence 45677778888888888888743
No 348
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=24.15 E-value=4.7e+02 Score=26.20 Aligned_cols=57 Identities=11% Similarity=0.251 Sum_probs=39.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhc------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 36 QKVSEIQTGLDEAESLIRKMDLEARS------LQPNVKAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 36 ~~~~~i~~~l~~~~~~l~~me~e~~~------~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
+...+++..++.++.-+...+..+.+ .|+...+.-+.++.++..+++.++..+..+.
T Consensus 929 ~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~ 991 (995)
T PTZ00419 929 KELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELK 991 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666555543 5677777888888888888888888776654
No 349
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=24.08 E-value=2.1e+02 Score=18.40 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 69 VLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 69 ~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
.+...+.+...++.++....+++-
T Consensus 31 ~~e~~i~~~~~~l~~I~~n~kW~~ 54 (71)
T PF10779_consen 31 ANEKDIKNLNKQLEKIKSNTKWIW 54 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666777766666553
No 350
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=24.05 E-value=5e+02 Score=22.86 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=15.5
Q ss_pred HHHHhcchhchhhhHHHHHHHHHHHHHHH
Q 027617 165 LLHAHNTLHGVDDNVSKSKKVLTAMSRRM 193 (221)
Q Consensus 165 l~~~~~~~~~i~~~l~~s~~~l~~i~rr~ 193 (221)
+......+..+..++..+..+...+..|.
T Consensus 337 l~~~~~~~~~L~r~~~~~~~~y~~ll~r~ 365 (444)
T TIGR03017 337 LNRQRDEMSVLQRDVENAQRAYDAAMQRY 365 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555556666666655555543
No 351
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=23.92 E-value=3.3e+02 Score=21.25 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 027617 46 DEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVS 93 (221)
Q Consensus 46 ~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~ 93 (221)
..+......+...+..+.|..+..|....+.|.+++..+.+.++..-.
T Consensus 115 ~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~l~ 162 (203)
T cd01145 115 NNAPALAKALADALIELDPSEQEEYKENLRVFLAKLNKLLREWERQFE 162 (203)
T ss_pred HHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555555555566777889999999999999999988876543
No 352
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=23.87 E-value=6e+02 Score=23.69 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhh
Q 027617 6 ERYERQYCEISANLSKKCTAAA 27 (221)
Q Consensus 6 ~~ye~e~~~~~~~i~~~l~~~~ 27 (221)
+..+..++...+..+.....+|
T Consensus 167 ~~~~~~~k~~~~~w~~~~~~Lp 188 (555)
T TIGR03545 167 EEIEKSLKAMQQKWKKRKKDLP 188 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444444444444444444
No 353
>COG3462 Predicted membrane protein [Function unknown]
Probab=23.84 E-value=1.3e+02 Score=21.45 Aligned_cols=7 Identities=29% Similarity=0.301 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 027617 200 IGTVVAV 206 (221)
Q Consensus 200 l~~ii~i 206 (221)
+++++++
T Consensus 56 ~~~vvli 62 (117)
T COG3462 56 FWAVVLI 62 (117)
T ss_pred HHHHHHH
Confidence 3333333
No 354
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=23.82 E-value=1.1e+02 Score=20.63 Aligned_cols=21 Identities=19% Similarity=0.513 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027617 197 KWIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 197 k~Il~~ii~il~i~i~~vl~~ 217 (221)
-++++..++++++++++-+||
T Consensus 25 ~li~~~LilfviF~~~L~~yy 45 (83)
T PF05814_consen 25 ELIITLLILFVIFFCVLQVYY 45 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444344443
No 355
>PF15431 TMEM190: Transmembrane protein 190
Probab=23.68 E-value=2.4e+02 Score=20.14 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027617 200 IGTVVAVLVIAIILILYFK 218 (221)
Q Consensus 200 l~~ii~il~i~i~~vl~~k 218 (221)
.++.++++++.|.+++|-|
T Consensus 67 tC~gll~Li~~iclFWWAk 85 (134)
T PF15431_consen 67 TCGGLLLLICSICLFWWAK 85 (134)
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 3566667777777777754
No 356
>PF12409 P5-ATPase: P5-type ATPase cation transporter
Probab=23.60 E-value=1.1e+02 Score=21.85 Aligned_cols=20 Identities=10% Similarity=0.471 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027617 197 KWIIGTVVAVLVIAIILILY 216 (221)
Q Consensus 197 k~Il~~ii~il~i~i~~vl~ 216 (221)
|.+++.++.++.++++++++
T Consensus 16 r~~l~~~l~ilT~Gll~L~~ 35 (119)
T PF12409_consen 16 RTILYYFLCILTLGLLYLVF 35 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45565555555555544443
No 357
>KOG4075 consensus Cytochrome c oxidase, subunit IV/COX5b [Energy production and conversion]
Probab=23.55 E-value=89 Score=24.00 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027617 192 RMSRNKWIIGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 192 r~~~dk~Il~~ii~il~i~i~~vl~~k~ 219 (221)
..-.-|.++.+...++.++|++++|.+.
T Consensus 95 ~~~ewKtv~g~~~~f~Gl~~~v~l~~~v 122 (167)
T KOG4075|consen 95 GSNEWKTVFGVAGFFLGLTISVILFGKV 122 (167)
T ss_pred CCCcccchhhHHHHHHHHHHHHHHHHhh
Confidence 3334467777777788888888877664
No 358
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=23.53 E-value=2.7e+02 Score=20.14 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=21.3
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 58 EARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91 (221)
Q Consensus 58 e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~ 91 (221)
..+.+|+..+..+..-++.....++.+-.++-+.
T Consensus 95 ~~~~L~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 128 (135)
T PRK09706 95 LFDALPESEQDAQLSEMRARVENFNKLFEELLKA 128 (135)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788877777766666666666655555443
No 359
>PF09815 XK-related: XK-related protein; InterPro: IPR018629 This entry is represented by the multipass membrane protein XK, which may be involved in sodium-dependent transport of neutral amino acids or oligopeptides. It forms a heterodimer with Kell. In humans, Kell is an 93kDa type II membrane glycoprotein with endothelin-3-converting enzyme activity that is linked by a single disulphide bond to XK, that spans the membrane ten times. An absence of XK leads to clinical symptoms termed the McLeod syndrome [MIM:314850], an X-linked multi-system disorder characterised by late onset abnormalities in the neuromuscular and hematopoietic systems [, ].
Probab=23.49 E-value=1e+02 Score=26.36 Aligned_cols=23 Identities=13% Similarity=0.405 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 027617 199 IIGTVVAVLVIAIILILYFKLAK 221 (221)
Q Consensus 199 Il~~ii~il~i~i~~vl~~k~~~ 221 (221)
....++..++.+++.++||+++|
T Consensus 308 ~~~v~~~~~lGi~~m~~YY~~~H 330 (332)
T PF09815_consen 308 LVVVLGGFLLGIAFMLLYYRFFH 330 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Confidence 33455556677777888888875
No 360
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=23.23 E-value=20 Score=27.00 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=0.0
Q ss_pred hHhHHHHhcchhchhhhHHHHHHHHHHHHHH
Q 027617 162 RQSLLHAHNTLHGVDDNVSKSKKVLTAMSRR 192 (221)
Q Consensus 162 re~l~~~~~~~~~i~~~l~~s~~~l~~i~rr 192 (221)
.+.+..+...+..+...+.......+.+..|
T Consensus 111 ~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r 141 (183)
T PF01105_consen 111 KEHLDPLEESLEKLESNLKEIKDEQKYLRER 141 (183)
T ss_dssp -------------------------------
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333333
No 361
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=23.18 E-value=1.1e+02 Score=26.71 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027617 197 KWIIGTVVAVLVIAIILILYFK 218 (221)
Q Consensus 197 k~Il~~ii~il~i~i~~vl~~k 218 (221)
.+|..+||++..++|++|+=|+
T Consensus 315 SiIAIvvIVLIMvIIYLILRYR 336 (353)
T TIGR01477 315 SIIAILIIVLIMVIIYLILRYR 336 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4666666666667777777664
No 362
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=23.15 E-value=2.3e+02 Score=18.55 Aligned_cols=44 Identities=9% Similarity=0.076 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 45 LDEAESLIRKMDLEARSL-QPNVKAVLLAKLREYKSDLNNLKSEV 88 (221)
Q Consensus 45 l~~~~~~l~~me~e~~~~-~~~~r~~~~~k~~~~r~~l~~l~~~~ 88 (221)
+.-..+-++.+-.-+... ++..|..++.|+.+|-..-+.+...+
T Consensus 26 ~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RAE~i~~~~ 70 (75)
T cd02677 26 FEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRAEEILRLH 70 (75)
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344433333322 34456778888888877666665543
No 363
>PF07664 FeoB_C: Ferrous iron transport protein B C terminus; InterPro: IPR011640 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions []. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus has been previously erroneously described as being ATP-binding []. Recent work shows that it is similar to eukaryotic G-proteins and that it is a GTPase [].; GO: 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane
Probab=23.11 E-value=1.5e+02 Score=17.83 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027617 199 IIGTVVAVLVIAIILILY 216 (221)
Q Consensus 199 Il~~ii~il~i~i~~vl~ 216 (221)
.+|++.+++.++.++++-
T Consensus 4 ~~y~~~~~~~l~~~~il~ 21 (54)
T PF07664_consen 4 SLYLLGILVALLVGLILK 21 (54)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 364
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=22.91 E-value=1.4e+02 Score=20.85 Aligned_cols=21 Identities=19% Similarity=0.146 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027617 193 MSRNKWIIGTVVAVLVIAIIL 213 (221)
Q Consensus 193 ~~~dk~Il~~ii~il~i~i~~ 213 (221)
..+|-.|+++.+++++++.++
T Consensus 48 ~WRN~GIli~f~i~f~~~~~~ 68 (103)
T PF06422_consen 48 RWRNFGILIAFWIFFIVLTLL 68 (103)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 455655665555444444333
No 365
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=22.89 E-value=3e+02 Score=22.47 Aligned_cols=59 Identities=8% Similarity=0.211 Sum_probs=41.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 027617 35 KQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVS 93 (221)
Q Consensus 35 ~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~ 93 (221)
.-...+++..++.....++.|+.-++.+........+.-...+++++..+-..|..+..
T Consensus 33 ~ld~~~ve~~~e~f~~F~k~Md~sv~~l~~~~~~~~kk~~~~~kkE~qkiG~af~~Ls~ 91 (237)
T PF10456_consen 33 PLDPQDVESQVESFKKFTKSMDDSVKQLSSVANEFAKKHQGPFKKEYQKIGQAFQSLSQ 91 (237)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHH
Confidence 34467888888888888888988877665443334444557889999998888877764
No 366
>PF14071 YlbD_coat: Putative coat protein
Probab=22.87 E-value=3.1e+02 Score=20.05 Aligned_cols=14 Identities=7% Similarity=0.076 Sum_probs=5.8
Q ss_pred HHHHHHhhcCChhH
Q 027617 53 RKMDLEARSLQPNV 66 (221)
Q Consensus 53 ~~me~e~~~~~~~~ 66 (221)
.+|=.-+..++++.
T Consensus 68 ~ql~~~vKkmD~nq 81 (124)
T PF14071_consen 68 SQLLSMVKKMDVNQ 81 (124)
T ss_pred HHHHHHHHHCCHHH
Confidence 33333334444443
No 367
>COG1422 Predicted membrane protein [Function unknown]
Probab=22.77 E-value=4e+02 Score=21.24 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHH
Q 027617 147 TEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKK 184 (221)
Q Consensus 147 te~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~ 184 (221)
+.++=.+++..+--..|.+++.++.+++.+.....|.+
T Consensus 56 i~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~ 93 (201)
T COG1422 56 ITGLYITILQKLLIDQEKMKELQKMMKEFQKEFREAQE 93 (201)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666666666666666666655554
No 368
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.56 E-value=8.8e+02 Score=25.18 Aligned_cols=32 Identities=9% Similarity=0.084 Sum_probs=14.5
Q ss_pred HHHhHHhhHhHHHHhcchhchhhhHHHHHHHH
Q 027617 155 LQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVL 186 (221)
Q Consensus 155 ~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l 186 (221)
...+..+++.+..+...+..+...+..+..-.
T Consensus 894 ~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1311)
T TIGR00606 894 STEVQSLIREIKDAKEQDSPLETFLEKDQQEK 925 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 34444444444444444444444444444333
No 369
>PTZ00046 rifin; Provisional
Probab=22.55 E-value=1.1e+02 Score=26.67 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027617 197 KWIIGTVVAVLVIAIILILYFK 218 (221)
Q Consensus 197 k~Il~~ii~il~i~i~~vl~~k 218 (221)
.+|..+||++..++|++|+=|+
T Consensus 320 SiiAIvVIVLIMvIIYLILRYR 341 (358)
T PTZ00046 320 SIVAIVVIVLIMVIIYLILRYR 341 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4666666666667777777654
No 370
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=22.46 E-value=4.3e+02 Score=21.50 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 027617 67 KAVLLAKLREYKSDLNNLKSEVKRLVS 93 (221)
Q Consensus 67 r~~~~~k~~~~r~~l~~l~~~~~~~~~ 93 (221)
|..+...++....|++.+...++.+..
T Consensus 48 r~~h~eeLrqI~~DIn~lE~iIkqa~~ 74 (230)
T PF10146_consen 48 RMAHVEELRQINQDINTLENIIKQAES 74 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777778888887777776653
No 371
>CHL00106 petL cytochrome b6/f complex subunit VI
Probab=22.46 E-value=1.5e+02 Score=16.09 Aligned_cols=21 Identities=10% Similarity=-0.075 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027617 198 WIIGTVVAVLVIAIILILYFK 218 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k 218 (221)
++-|+++++..+++..++|..
T Consensus 4 iisYf~~L~~a~~~t~~lfig 24 (31)
T CHL00106 4 ITSYFGFLLAALTITSGLFIG 24 (31)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555543
No 372
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=22.27 E-value=2.6e+02 Score=18.87 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=10.2
Q ss_pred HHHHHhHHhhHhHHHHhcchh
Q 027617 153 SILQDLSSQRQSLLHAHNTLH 173 (221)
Q Consensus 153 ~~~~~L~~Qre~l~~~~~~~~ 173 (221)
.+-.++..+...|...+.-+.
T Consensus 40 ~~~~e~~~~~~~l~~s~~ll~ 60 (92)
T PF03908_consen 40 STNDEYDGQSSLLKKSRKLLK 60 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555554444
No 373
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=22.18 E-value=4.1e+02 Score=21.19 Aligned_cols=80 Identities=13% Similarity=0.248 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHhHh---hccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHH----HHHHHHHH
Q 027617 7 RYERQYCEISANLSKKCTAA---ASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLL----AKLREYKS 79 (221)
Q Consensus 7 ~ye~e~~~~~~~i~~~l~~~---~~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~----~k~~~~r~ 79 (221)
+|..|++.+...+.-.+-.+ -...|+.+...+.+|...+-.+..+|+.+. |-..|..+. .++++-+.
T Consensus 74 d~K~ELRkLnrslllnfleL~~ILi~~P~~~e~Kvedi~tifvnlHHLiNeyR------PhQaResLi~lmE~Qi~~~~~ 147 (223)
T KOG0570|consen 74 DYKKELRKLNRSLLLNFLELLDILIRAPDMREEKVEDIRTIFVNLHHLINEYR------PHQARESLIMLMERQIEQRSD 147 (223)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhccC------chhHHHHHHHHHHHHHHHHHH
Confidence 57788888877665432222 123456676777777777777777776553 444455433 34444444
Q ss_pred HHHHHHHHHHHHH
Q 027617 80 DLNNLKSEVKRLV 92 (221)
Q Consensus 80 ~l~~l~~~~~~~~ 92 (221)
.++.+++-+++..
T Consensus 148 ~ve~~kk~~~~~~ 160 (223)
T KOG0570|consen 148 IVEDFKKHLRQVR 160 (223)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 374
>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Probab=22.09 E-value=2.1e+02 Score=18.65 Aligned_cols=15 Identities=13% Similarity=0.076 Sum_probs=7.4
Q ss_pred hhhHHHHHHHHHHHH
Q 027617 176 DDNVSKSKKVLTAMS 190 (221)
Q Consensus 176 ~~~l~~s~~~l~~i~ 190 (221)
-.-+..+...++++.
T Consensus 21 ~~f~~~~~~E~~KV~ 35 (73)
T COG0690 21 FNFFKEVRKELKKVV 35 (73)
T ss_pred HHHHHHHHHHHHhcc
Confidence 334445555555553
No 375
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=22.04 E-value=1.3e+02 Score=23.93 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027617 196 NKWIIGTVVAVLVIAIILILYFK 218 (221)
Q Consensus 196 dk~Il~~ii~il~i~i~~vl~~k 218 (221)
+.+.++++++++++++++++-++
T Consensus 183 n~lgiG~v~I~~l~~~~~~l~~~ 205 (209)
T PF11353_consen 183 NPLGIGTVLIVLLILLGFLLRRR 205 (209)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555554444443
No 376
>PF13163 DUF3999: Protein of unknown function (DUF3999)
Probab=21.99 E-value=72 Score=28.48 Aligned_cols=23 Identities=9% Similarity=0.216 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027617 195 RNKWIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 195 ~dk~Il~~ii~il~i~i~~vl~~ 217 (221)
.+||+||+++++-+++++++.|+
T Consensus 406 ~~~~~LW~~Lv~gV~vL~~mA~r 428 (429)
T PF13163_consen 406 WKRWLLWGALVLGVAVLGGMAWR 428 (429)
T ss_pred hhhhHHHHHHHHHHHHHHHHhee
Confidence 56899999999888888877664
No 377
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=21.93 E-value=8.7e+02 Score=24.86 Aligned_cols=11 Identities=9% Similarity=0.356 Sum_probs=3.9
Q ss_pred hhchhhhHHHH
Q 027617 172 LHGVDDNVSKS 182 (221)
Q Consensus 172 ~~~i~~~l~~s 182 (221)
+..+...+...
T Consensus 893 l~~~~~~~~~~ 903 (1163)
T COG1196 893 LRELESELAEL 903 (1163)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 378
>PF03994 DUF350: Domain of Unknown Function (DUF350) ; InterPro: IPR007140 This motif occurs in a small set of bacterial proteins. It has two transmembrane regions, and often occurs as tandem repeats. The are no conserved catalytic residues.
Probab=21.92 E-value=1.1e+02 Score=18.34 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027617 201 GTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 201 ~~ii~il~i~i~~vl~~k~ 219 (221)
|+++++++..+++.++-++
T Consensus 1 y~~~g~~l~~~~~~~~~~~ 19 (54)
T PF03994_consen 1 YGLVGIVLLLLGFFVFDLL 19 (54)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555544
No 379
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=21.88 E-value=1.4e+02 Score=15.72 Aligned_cols=15 Identities=27% Similarity=0.605 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 027617 198 WIIGTVVAVLVIAII 212 (221)
Q Consensus 198 ~Il~~ii~il~i~i~ 212 (221)
+|+.+.+++.+.++.
T Consensus 6 WilG~~lA~~~~i~~ 20 (28)
T PF08173_consen 6 WILGVLLACAFGILN 20 (28)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555544443
No 380
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=21.81 E-value=2.2e+02 Score=23.91 Aligned_cols=49 Identities=8% Similarity=0.193 Sum_probs=29.9
Q ss_pred hHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 164 SLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILIL 215 (221)
Q Consensus 164 ~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl 215 (221)
-|.++...+......|.+|..-=++-.++. .+.|.++++++++++.++.
T Consensus 231 Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~---~~~Llil~vv~lfv~l~~k 279 (283)
T COG5325 231 NIENTSDNLKNANKELEKAPAHQRRTKKCR---FYLLLILLVVLLFVSLIKK 279 (283)
T ss_pred hhhhhhHHHHhhHHHHHHhHHHHhhhccch---hhHHHHHHHHHHHHHHHHH
Confidence 456777788888888888887776655554 3444444444444444443
No 381
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=21.79 E-value=2.7e+02 Score=18.85 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=14.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH
Q 027617 36 QKVSEIQTGLDEAESLIRKMDL 57 (221)
Q Consensus 36 ~~~~~i~~~l~~~~~~l~~me~ 57 (221)
.-+..|...|+.+..+++.+|.
T Consensus 26 ~E~~~ins~LD~Lns~LD~LE~ 47 (83)
T PF03670_consen 26 EEYAAINSMLDQLNSCLDHLEQ 47 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777653
No 382
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.69 E-value=3.3e+02 Score=19.84 Aligned_cols=49 Identities=14% Similarity=0.286 Sum_probs=33.2
Q ss_pred HhhHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 42 QTGLDEAESLIRKMDLEARSLQ-PNVKAVLLAKLREYKSDLNNLKSEVKR 90 (221)
Q Consensus 42 ~~~l~~~~~~l~~me~e~~~~~-~~~r~~~~~k~~~~r~~l~~l~~~~~~ 90 (221)
+..|+++-+.+-++...+.... ++.+..+..++..+-..+..+.+.-..
T Consensus 2 e~~l~~~i~~l~el~~~v~d~~~~~s~~~L~~ki~~lv~~L~~l~~~~~~ 51 (128)
T PF09748_consen 2 EQQLEDVIQSLYELGVIVSDFQGPPSQEALNQKINQLVTSLQELDKLAQQ 51 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455666666677777777775 555678888888887777766654433
No 383
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=21.59 E-value=3.8e+02 Score=20.64 Aligned_cols=64 Identities=11% Similarity=0.070 Sum_probs=27.1
Q ss_pred HHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 150 LGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILY 216 (221)
Q Consensus 150 ~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl~ 216 (221)
++.........=+..|.....++......-...+.....-.+|.. +..++.+++-.++++...|
T Consensus 51 ~~~~~~~~~~~l~~~l~~~~~el~~le~~k~~id~~A~~~~~~~~---w~gl~~l~~q~~~l~rLTf 114 (180)
T PF04678_consen 51 VEEYQNSRERQLRKRLEELRQELAPLEKIKQEIDEKAEKRARRLL---WGGLALLVVQFGILARLTF 114 (180)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 333333333333444445555554444444444444444444443 3333333344444444444
No 384
>PF08649 DASH_Dad1: DASH complex subunit Dad1; InterPro: IPR013958 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules []. Throughout the cell cycle Dad1 remains bound to kinetochores and its association is dependent on the Mis6 and Mal2 [].
Probab=21.47 E-value=2.2e+02 Score=17.81 Aligned_cols=14 Identities=14% Similarity=0.057 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 027617 137 IKDSRRTMLETEEL 150 (221)
Q Consensus 137 L~~s~~~~~ete~~ 150 (221)
|+.+..+..|.+.+
T Consensus 32 LE~~i~VGkEF~~V 45 (58)
T PF08649_consen 32 LESVISVGKEFESV 45 (58)
T ss_pred HHHHHHHhhhHHHH
Confidence 44444444444333
No 385
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion]
Probab=21.35 E-value=94 Score=28.79 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 027617 198 WIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
++..+++.+|+++++|++|++++
T Consensus 444 ~~~~~~~~l~~~lv~~~~~r~~i 466 (545)
T COG1766 444 SLIPVALYLVVFLVLFIIVRPVI 466 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555667776654
No 386
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=21.34 E-value=3.4e+02 Score=19.98 Aligned_cols=18 Identities=11% Similarity=0.250 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhHh
Q 027617 9 ERQYCEISANLSKKCTAA 26 (221)
Q Consensus 9 e~e~~~~~~~i~~~l~~~ 26 (221)
..+|..+.+.+...|..+
T Consensus 42 ~~~f~~~~~~~~~~L~~v 59 (142)
T PF04048_consen 42 YQEFEELKKRIEKALQEV 59 (142)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444445554444443
No 387
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.26 E-value=2e+02 Score=23.69 Aligned_cols=40 Identities=15% Similarity=0.368 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 027617 178 NVSKSKKVLTAMSRRMSRNK---WIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 178 ~l~~s~~~l~~i~rr~~~dk---~Il~~ii~il~i~i~~vl~~ 217 (221)
.|+-..+++=.+.|=++.+| .++++-++++=+++++++|+
T Consensus 197 ~L~~~eR~~ls~~r~vL~nr~~R~~f~~Y~l~LH~lvf~~l~~ 239 (248)
T PF08172_consen 197 RLSPPERIFLSLTRFVLSNRTTRMLFFFYCLGLHLLVFFVLYY 239 (248)
T ss_pred cCChHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554 23333333333333445554
No 388
>PF11146 DUF2905: Protein of unknown function (DUF2905); InterPro: IPR021320 This is a family of bacterial proteins conserved of unknown function.
Probab=21.23 E-value=1.8e+02 Score=18.61 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027617 197 KWIIGTVVAVLVIAIILILYFK 218 (221)
Q Consensus 197 k~Il~~ii~il~i~i~~vl~~k 218 (221)
|+++.++++++++..++.+.-|
T Consensus 3 k~li~~gl~l~v~G~l~~~~~k 24 (64)
T PF11146_consen 3 KWLIVIGLILIVLGLLLPWLGK 24 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4556555555555544444333
No 389
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=21.20 E-value=4.9e+02 Score=21.74 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 027617 4 VFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLE 58 (221)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e 58 (221)
++.--.++|.++..+++-.++...+.+.. -+..+..-+.-|++.+.++..|...
T Consensus 86 L~~lgkeelqkl~~eLe~vLs~~q~Knek-Lke~LerEq~wL~Eqqql~~sL~~r 139 (268)
T PF11802_consen 86 LLTLGKEELQKLISELEMVLSTVQSKNEK-LKEDLEREQQWLDEQQQLLESLNKR 139 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888888888887777543321 1122333344444444444444333
No 390
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=21.19 E-value=3.7e+02 Score=20.34 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChh-HHHHHHHHHHHHHHHH
Q 027617 3 DVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPN-VKAVLLAKLREYKSDL 81 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~-~r~~~~~k~~~~r~~l 81 (221)
+.|..|++++..--..+..++..-- ..+.+....|.++..-+. +..-|.. .-..+..++.....+|
T Consensus 34 s~f~AkEeeIErkKmeVrekVq~~L--------grveEetkrLa~ireeLE-----~l~dP~RkEv~~vRkkID~vNreL 100 (159)
T PF04949_consen 34 SAFRAKEEEIERKKMEVREKVQAQL--------GRVEEETKRLAEIREELE-----VLADPMRKEVEMVRKKIDSVNREL 100 (159)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHH-----hhccchHHHHHHHHHHHHHHHHHh
Confidence 4688888887766655544333210 011122233333332222 2222321 1235677777777788
Q ss_pred HHHHHHHHHHH
Q 027617 82 NNLKSEVKRLV 92 (221)
Q Consensus 82 ~~l~~~~~~~~ 92 (221)
+.+...+++..
T Consensus 101 kpl~~~cqKKE 111 (159)
T PF04949_consen 101 KPLGQSCQKKE 111 (159)
T ss_pred hHHHHHHHHHH
Confidence 87777776654
No 391
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=21.06 E-value=3.9e+02 Score=22.20 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhh
Q 027617 49 ESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAA 100 (221)
Q Consensus 49 ~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~~~~~~~~ 100 (221)
+.+|..++..+.-.|.. .+..++..++..+..+..++..+...+..+..
T Consensus 160 evLL~~ae~L~~vYP~~---ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~ 208 (259)
T PF08657_consen 160 EVLLRGAEKLCNVYPLP---GAREKIAALRQRYNQLSNSIAYLEAEVAEQEA 208 (259)
T ss_pred HHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555643 57788888888888888888777766543333
No 392
>PRK15324 type III secretion system lipoprotein PrgK; Provisional
Probab=21.05 E-value=1.3e+02 Score=24.90 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027617 70 LLAKLREYKSDLNNLKSEVKRL 91 (221)
Q Consensus 70 ~~~k~~~~r~~l~~l~~~~~~~ 91 (221)
..++++-++.-=.+|.+.+..+
T Consensus 99 ~~Ek~r~~~ALe~ELarTI~~I 120 (252)
T PRK15324 99 RAEKARLYSAIEQRLEQSLQTM 120 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444443334444444443
No 393
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=21.00 E-value=1.7e+02 Score=27.03 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 194 SRNKWIIGTVVAVLVIAIILILYFK 218 (221)
Q Consensus 194 ~~dk~Il~~ii~il~i~i~~vl~~k 218 (221)
..-+++.++++.++++++++++|++
T Consensus 522 ~~~~~~~i~~pp~~~l~~G~~~~~~ 546 (552)
T TIGR03521 522 TTWQLINIGLPILLLLLFGLSFTYI 546 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666656666677777754
No 394
>PF13997 YqjK: YqjK-like protein
Probab=20.98 E-value=2.5e+02 Score=18.28 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=30.2
Q ss_pred HHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHH
Q 027617 155 LQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSR 191 (221)
Q Consensus 155 ~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~r 191 (221)
+.++..||..|-.......++-+-++++-..+..+.+
T Consensus 2 l~qi~qQR~~La~~~~~w~~~ta~~Dr~w~~l~~lr~ 38 (73)
T PF13997_consen 2 LRQIQQQRLDLAANAEPWLEATAPYDRGWQTLRSLRR 38 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHH
Confidence 3567889999999999999999999998887775544
No 395
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=20.92 E-value=5.1e+02 Score=21.84 Aligned_cols=38 Identities=11% Similarity=0.231 Sum_probs=23.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHH
Q 027617 130 VNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHA 168 (221)
Q Consensus 130 l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~ 168 (221)
++++.+.| .|+..-.++-..+.++-..|..=|||++++
T Consensus 253 mnRE~NTi-gSKs~d~~is~~vVe~K~eiEkiREQVQNI 290 (291)
T TIGR00255 253 LNRESNTL-ASKAIDADITNLAVEMKVLIEKIKEQIQNI 290 (291)
T ss_pred HhHHHHHH-HHccCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444433 235555566777777777777777777764
No 396
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=20.83 E-value=4.8e+02 Score=21.42 Aligned_cols=26 Identities=8% Similarity=0.342 Sum_probs=13.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhh
Q 027617 35 KQKVSEIQTGLDEAESLIRKMDLEAR 60 (221)
Q Consensus 35 ~~~~~~i~~~l~~~~~~l~~me~e~~ 60 (221)
...+..++..+..+..-+...+.++.
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e 55 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELE 55 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444444
No 397
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=20.76 E-value=1.1e+02 Score=29.66 Aligned_cols=20 Identities=20% Similarity=0.534 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027617 198 WIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~ 217 (221)
.||.++++++++++++++||
T Consensus 277 ~ILG~~~livl~lL~vLl~y 296 (807)
T PF10577_consen 277 AILGGTALIVLILLCVLLCY 296 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35555555555555555554
No 398
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=20.74 E-value=29 Score=23.73 Aligned_cols=19 Identities=5% Similarity=0.315 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 027617 202 TVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 202 ~ii~il~i~i~~vl~~k~~ 220 (221)
++++++.+++++.+|.-|.
T Consensus 41 ~i~~lvaVg~~YL~y~~fL 59 (91)
T PF01708_consen 41 AIFTLVAVGCLYLAYTWFL 59 (91)
T ss_pred eehHHHHHHHHHHHHHHHH
Confidence 3444444444555555443
No 399
>PRK12659 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=20.74 E-value=1.6e+02 Score=21.20 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 027617 198 WIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
++..++|++.+.+.+++++++.+
T Consensus 77 vLTaIVIg~Av~a~~lvl~~r~~ 99 (117)
T PRK12659 77 ILTAIVIGFGVQAFAIVLIKRAY 99 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777777777777654
No 400
>PF15339 Afaf: Acrosome formation-associated factor
Probab=20.64 E-value=3.2e+02 Score=21.28 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 027617 199 IIGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 199 Il~~ii~il~i~i~~vl~~k~ 219 (221)
+|.+++++.++++++...||+
T Consensus 138 LmTl~lfv~Ll~~c~atlykl 158 (200)
T PF15339_consen 138 LMTLFLFVILLAFCSATLYKL 158 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555554
No 401
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=20.63 E-value=2e+02 Score=17.39 Aligned_cols=7 Identities=0% Similarity=0.078 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 027617 204 VAVLVIA 210 (221)
Q Consensus 204 i~il~i~ 210 (221)
+.++..+
T Consensus 30 ~tivfa~ 36 (51)
T PF14715_consen 30 GTIVFAV 36 (51)
T ss_pred HHHHHHH
Confidence 3333333
No 402
>PRK08343 secD preprotein translocase subunit SecD; Reviewed
Probab=20.62 E-value=1.4e+02 Score=26.57 Aligned_cols=23 Identities=22% Similarity=0.509 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027617 197 KWIIGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 197 k~Il~~ii~il~i~i~~vl~~k~ 219 (221)
+.+..+++++++++++.++||+.
T Consensus 262 ~~l~a~ii~~ilVl~~m~~~yr~ 284 (417)
T PRK08343 262 GSLIAGLLALLAVALVVFLRYRE 284 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777777777765
No 403
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=20.61 E-value=1.1e+02 Score=17.98 Aligned_cols=19 Identities=16% Similarity=0.118 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027617 201 GTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 201 ~~ii~il~i~i~~vl~~k~ 219 (221)
+++.++++.+.++-+|.-|
T Consensus 9 i~i~~~lv~~Tgy~iYtaF 27 (43)
T PF02468_consen 9 IFISCLLVSITGYAIYTAF 27 (43)
T ss_pred HHHHHHHHHHHhhhhhhee
Confidence 3444444555556666544
No 404
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=20.57 E-value=33 Score=25.35 Aligned_cols=9 Identities=11% Similarity=0.006 Sum_probs=0.0
Q ss_pred hhHhHHHHh
Q 027617 161 QRQSLLHAH 169 (221)
Q Consensus 161 Qre~l~~~~ 169 (221)
-.+.+..+.
T Consensus 29 ~~~~~~~~~ 37 (138)
T PF06009_consen 29 WSENLGEIN 37 (138)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 333333333
No 405
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=20.51 E-value=3.5e+02 Score=24.98 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC
Q 027617 32 ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQ 63 (221)
Q Consensus 32 ~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~ 63 (221)
.+....++++...|+=+..+...+..-+..+.
T Consensus 251 ~e~~e~~~kl~~~l~~l~~~~~rvss~AE~lG 282 (538)
T PF05781_consen 251 NESREIIQKLQKSLDVLHQCATRVSSRAEMLG 282 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777888888888888888777765555443
No 406
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=20.48 E-value=4.7e+02 Score=21.20 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 027617 74 LREYKSDLNNLKSEV 88 (221)
Q Consensus 74 ~~~~r~~l~~l~~~~ 88 (221)
...+..++..+...|
T Consensus 123 ~~~l~~~l~~l~~~~ 137 (247)
T PF06705_consen 123 NQELVRELNELQEAF 137 (247)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444444
No 407
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=20.38 E-value=2.8e+02 Score=18.51 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 67 KAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 67 r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
...|..|+...+.++..+...+.+++
T Consensus 59 ~~~y~~KL~~ikkrm~~l~~~l~~lk 84 (92)
T PF14712_consen 59 LDPYVKKLVNIKKRMSNLHERLQKLK 84 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34499999999999999998888776
No 408
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.30 E-value=5.4e+02 Score=21.83 Aligned_cols=66 Identities=23% Similarity=0.267 Sum_probs=42.6
Q ss_pred HHHhHHhhHhHHHHh-cchhchhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhc
Q 027617 155 LQDLSSQRQSLLHAH-NTLHGVDDNVSKSKKVLTAMSRRMSRNKW----IIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 155 ~~~L~~Qre~l~~~~-~~~~~i~~~l~~s~~~l~~i~rr~~~dk~----Il~~ii~il~i~i~~vl~~k~~ 220 (221)
++.+-.|=..+..-. .-+..||.+++.+...|..=.+-+++..= =-|+++=|+.++|+|+++|-+|
T Consensus 239 lG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvfvlf 309 (311)
T KOG0812|consen 239 LGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLVFVLF 309 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444443 34567788888888777765555444321 2389999999999998887665
No 409
>PTZ00464 SNF-7-like protein; Provisional
Probab=20.23 E-value=4.6e+02 Score=21.00 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=22.2
Q ss_pred HHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHH
Q 027617 151 GVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSR 191 (221)
Q Consensus 151 g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~r 191 (221)
...++..|..-...|+.++..+ ++.....++..|.-
T Consensus 100 ~~~vv~amk~g~kaLK~~~k~i-----~id~Vd~l~Dei~E 135 (211)
T PTZ00464 100 TKVQVDAMKQAAKTLKKQFKKL-----NVDKVEDLQDELAD 135 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHH
Confidence 4566777777788888877665 24444444444443
No 410
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=20.22 E-value=2.3e+02 Score=21.69 Aligned_cols=29 Identities=14% Similarity=0.338 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 027617 49 ESLIRKMDLEARSLQPNVKAVLLAKLREY 77 (221)
Q Consensus 49 ~~~l~~me~e~~~~~~~~r~~~~~k~~~~ 77 (221)
++-+++++.+++.+|+++++...+-.++|
T Consensus 4 ~efL~~L~~~L~~lp~~e~~e~l~~Y~e~ 32 (181)
T PF08006_consen 4 NEFLNELEKYLKKLPEEEREEILEYYEEY 32 (181)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34567777777778887766555444444
No 411
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=20.15 E-value=4.7e+02 Score=21.14 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHh
Q 027617 6 ERYERQYCEISANLSKKCTAA 26 (221)
Q Consensus 6 ~~ye~e~~~~~~~i~~~l~~~ 26 (221)
+.|=.+|+.++..+..+..++
T Consensus 24 EkhFg~lC~~~a~ytRKtArL 44 (219)
T PF06730_consen 24 EKHFGELCQLFAAYTRKTARL 44 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555
No 412
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.06 E-value=4.6e+02 Score=20.91 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=41.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhc----C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 027617 35 KQKVSEIQTGLDEAESLIRKMDLEARS----L-QPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 94 (221)
Q Consensus 35 ~~~~~~i~~~l~~~~~~l~~me~e~~~----~-~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~~ 94 (221)
.+....+...|+.+++.-+.+-.|+.. . .|+-|..=..+++.-+..|..+-+.++++..+
T Consensus 77 ~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y~~~sLR~~S~~kL~~tr~~Y~~L~~aM~~Ae~k 141 (201)
T PF11172_consen 77 EDAAEEVSDRIDAVEDVADALFDEWEQELDQYSNASLRRASEQKLAETRRRYAQLIKAMRRAESK 141 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666777776666666555543 2 45667788888888888888888888887644
No 413
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=20.01 E-value=3.2e+02 Score=19.15 Aligned_cols=38 Identities=11% Similarity=0.104 Sum_probs=23.5
Q ss_pred HhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 168 AHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVA 205 (221)
Q Consensus 168 ~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii~ 205 (221)
.-+.+++...+..-+++..+.+.-+...=.+++.+++.
T Consensus 19 ~~~~I~k~~~~~n~~kk~fkki~~KKyg~~~il~~l~~ 56 (104)
T PF12420_consen 19 KIDYIDKLKKDPNIDKKKFKKIIFKKYGLIFILPFLVP 56 (104)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34556666666667777777776666665555544444
No 414
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=20.00 E-value=1.7e+02 Score=15.84 Aligned_cols=9 Identities=44% Similarity=0.977 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 027617 210 AIILILYFK 218 (221)
Q Consensus 210 ~i~~vl~~k 218 (221)
++++++|.|
T Consensus 20 ~FLiilyvq 28 (31)
T PF05151_consen 20 AFLIILYVQ 28 (31)
T ss_dssp HHHHHHHHH
T ss_pred HHHhheEee
Confidence 344455544
Done!