Query 027617
Match_columns 221
No_of_seqs 140 out of 808
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 21:29:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027617.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027617hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qyw_A Vesicle transport throu 99.8 2E-20 6.7E-25 131.6 11.5 89 1-89 13-102 (102)
2 1vcs_A Vesicle transport throu 99.8 2.7E-20 9.2E-25 131.0 9.3 94 1-94 3-96 (102)
3 3onj_A T-snare VTI1; helix, HA 99.8 3.1E-19 1.1E-23 124.4 12.3 91 3-93 1-94 (97)
4 2nps_C Vesicle transport throu 99.8 5.4E-19 1.9E-23 118.8 6.9 80 118-197 2-81 (81)
5 1gl2_C VTI1B, vesicle transpor 99.5 1.3E-14 4.6E-19 93.3 5.9 64 128-191 2-65 (65)
6 1n7s_C SNAP-25A; neuronal snar 99.3 4.1E-11 1.4E-15 79.8 9.4 66 126-191 14-79 (79)
7 1nhl_A Synaptosomal-associated 99.0 1.3E-09 4.5E-14 67.1 5.6 52 138-189 3-54 (54)
8 3b5n_C Protein transport prote 98.5 6.3E-07 2.1E-11 57.8 8.3 61 131-191 8-68 (70)
9 1l4a_C S-SNAP25 fusion protein 98.4 2.5E-07 8.4E-12 61.7 4.0 63 128-190 20-82 (83)
10 3hd7_B Syntaxin-1A; membrane p 97.9 0.00035 1.2E-08 49.1 12.2 84 131-214 17-103 (109)
11 3hd7_A Vesicle-associated memb 97.8 0.00079 2.7E-08 45.6 12.0 63 134-196 4-66 (91)
12 2kog_A Vesicle-associated memb 97.0 0.00047 1.6E-08 49.1 3.6 79 133-211 31-109 (119)
13 3hd7_A Vesicle-associated memb 96.4 0.05 1.7E-06 36.6 10.0 52 155-212 35-86 (91)
14 1gl2_D Syntaxin 8, vesicle tra 95.8 0.029 1E-06 35.2 6.0 61 130-190 4-64 (65)
15 2nps_D Syntaxin-6; vesicle fus 95.3 0.055 1.9E-06 35.6 6.4 65 129-193 13-77 (82)
16 3b5n_D Protein transport prote 95.2 0.11 3.8E-06 32.5 7.2 56 133-188 8-63 (64)
17 1sfc_D Protein (SNAP-25B), pro 95.2 0.087 3E-06 35.1 7.0 62 130-191 24-85 (87)
18 1n7s_D SNAP-25A; neuronal snar 95.0 0.15 5.3E-06 31.9 7.4 58 132-189 7-64 (66)
19 1l4a_D S-SNAP25 fusion protein 94.3 0.12 4E-06 34.5 5.9 60 132-191 27-86 (87)
20 1dn1_B Syntaxin 1A, syntaxin b 92.9 2.7 9.2E-05 33.7 12.8 55 133-187 198-252 (267)
21 2c5k_T Syntaxin TLG1, T-snare 91.2 2.4 8.1E-05 28.5 9.5 84 1-88 3-91 (95)
22 2xhe_B Syntaxin1; exocytosis, 85.8 12 0.00042 29.9 12.1 56 134-189 216-271 (279)
23 3c98_B Syntaxin-1A; protein co 84.3 10 0.00035 29.6 10.4 60 128-187 205-264 (279)
24 3ghg_A Fibrinogen alpha chain; 82.7 9 0.00031 33.6 9.6 25 3-27 53-77 (562)
25 2jee_A YIIU; FTSZ, septum, coi 82.6 7.7 0.00026 25.1 9.7 19 1-19 3-22 (81)
26 2kog_A Vesicle-associated memb 82.5 2.2 7.4E-05 30.0 4.8 82 128-215 33-117 (119)
27 1jth_B Syntaxin 1A; coiled-coi 79.2 9.8 0.00033 24.2 8.2 59 134-192 9-67 (77)
28 1fjk_A Cardiac phospholamban; 79.2 4.6 0.00016 22.9 4.4 26 190-215 24-49 (52)
29 1deq_A Fibrinogen (alpha chain 74.9 22 0.00075 29.9 9.3 27 3-29 56-82 (390)
30 1sfc_A VAMP 2, protein (synapt 73.4 18 0.0006 24.2 7.8 63 132-194 27-89 (96)
31 2nps_B Syntaxin 13, vesicle-as 72.5 15 0.0005 22.9 7.4 57 136-192 7-63 (71)
32 3b5n_A Synaptobrevin homolog 1 70.7 15 0.00051 22.2 7.9 58 135-192 2-59 (61)
33 2knc_B Integrin beta-3; transm 68.4 5.5 0.00019 25.7 3.5 20 200-219 15-34 (79)
34 1gl2_B Syntaxin 7; membrane pr 68.3 18 0.00061 22.1 7.4 53 136-188 10-62 (65)
35 3b5n_B Protein SSO1; snare com 66.1 21 0.0007 22.1 8.3 57 134-190 9-65 (69)
36 4dnd_A Syntaxin-10, SYN10; str 65.7 33 0.0011 24.2 11.7 89 3-92 27-125 (130)
37 1n7s_A Vesicle-associated memb 65.6 20 0.00068 21.7 8.0 59 134-192 3-61 (63)
38 1n7s_B Syntaxin 1A; neuronal s 65.1 21 0.00073 21.9 8.3 55 134-188 11-65 (68)
39 1m1j_B Fibrinogen beta chain; 64.9 69 0.0024 27.7 11.6 27 3-29 89-115 (464)
40 2k9j_B Integrin beta-3; transm 63.8 9.7 0.00033 21.4 3.5 19 201-219 15-33 (43)
41 3vkg_A Dynein heavy chain, cyt 62.0 1.9E+02 0.0063 31.7 25.2 98 122-219 2015-2119(3245)
42 3na7_A HP0958; flagellar bioge 61.0 58 0.002 25.5 14.3 15 40-54 36-50 (256)
43 4afl_A P29ING4, inhibitor of g 60.5 35 0.0012 22.8 7.3 24 4-27 5-28 (104)
44 2jwa_A Receptor tyrosine-prote 59.9 9.3 0.00032 21.7 2.9 8 210-217 28-35 (44)
45 3j1r_A Archaeal adhesion filam 55.6 18 0.0006 17.8 3.3 17 203-219 8-24 (26)
46 1m1j_A Fibrinogen alpha subuni 55.5 1E+02 0.0035 26.6 10.6 89 3-92 54-152 (491)
47 3ol1_A Vimentin; structural ge 54.7 50 0.0017 22.8 10.1 20 1-20 11-30 (119)
48 2rpa_A Katanin P60 ATPase-cont 54.3 40 0.0014 21.5 6.1 51 36-86 23-74 (78)
49 3mq9_A Bone marrow stromal ant 53.9 1E+02 0.0035 26.2 11.0 18 69-86 401-418 (471)
50 1pi7_A VPU protein, U ORF prot 53.5 20 0.00068 19.4 3.4 7 213-219 26-32 (36)
51 1jdm_A Sarcolipin; helix, memb 52.8 14 0.00049 18.7 2.6 15 199-213 10-24 (31)
52 1yod_A Water-solublized phosph 52.5 22 0.00074 17.9 4.6 25 191-215 4-28 (30)
53 1t3j_A Mitofusin 1; coiled coi 52.4 49 0.0017 22.0 7.1 50 39-88 43-94 (96)
54 3gwk_C SAG1039, putative uncha 50.2 48 0.0017 21.3 7.9 48 40-90 26-73 (98)
55 3tul_A Cell invasion protein S 50.0 69 0.0024 23.1 9.9 55 38-92 71-127 (158)
56 3lay_A Zinc resistance-associa 49.8 77 0.0026 23.5 7.7 41 50-90 96-138 (175)
57 2lk9_A Bone marrow stromal ant 49.6 18 0.00061 19.1 2.7 13 197-209 4-16 (35)
58 2db7_A Hairy/enhancer-OF-split 49.0 42 0.0014 20.5 4.9 42 4-45 15-59 (64)
59 1afo_A Glycophorin A; integral 48.6 27 0.00091 19.1 3.4 19 198-216 14-32 (40)
60 2k1a_A Integrin alpha-IIB; sin 48.3 27 0.00093 19.5 3.6 18 201-218 16-33 (42)
61 2l3l_A Tubulin-specific chaper 48.0 63 0.0022 22.0 9.5 67 7-86 35-105 (111)
62 1q90_R Cytochrome B6-F complex 47.7 39 0.0013 19.5 4.9 23 188-210 8-30 (49)
63 4afl_A P29ING4, inhibitor of g 47.2 60 0.0021 21.6 7.6 16 36-51 25-40 (104)
64 2jee_A YIIU; FTSZ, septum, coi 46.3 57 0.0019 21.0 7.2 25 37-61 7-31 (81)
65 1sfc_B Protein (syntaxin 1A), 46.3 55 0.0019 20.9 8.5 58 133-190 19-76 (83)
66 3ghg_A Fibrinogen alpha chain; 46.0 1E+02 0.0035 27.1 8.5 43 46-89 113-155 (562)
67 1v54_D Cytochrome C oxidase su 44.9 22 0.00077 25.7 3.7 24 197-220 79-102 (147)
68 1vp7_A Exodeoxyribonuclease VI 44.8 68 0.0023 21.5 7.1 52 40-91 31-84 (100)
69 1nlw_A MAD protein, MAX dimeri 44.8 58 0.002 20.7 6.9 15 9-23 13-27 (80)
70 3nmd_A CGMP dependent protein 44.7 56 0.0019 20.5 7.3 24 69-92 44-67 (72)
71 2l6w_A Beta-type platelet-deri 50.6 4.6 0.00016 22.2 0.0 12 206-217 22-33 (39)
72 1l4a_A Synaptobrevin; snare, s 44.4 18 0.00063 23.1 2.9 58 135-192 15-72 (80)
73 1m56_D Cytochrome C oxidase; m 44.4 29 0.00098 20.3 3.5 18 198-215 31-48 (51)
74 3vou_A ION transport 2 domain 44.2 52 0.0018 23.3 5.7 39 179-217 8-46 (148)
75 3arc_I Photosystem II reaction 43.8 25 0.00085 19.0 2.8 18 195-212 3-20 (38)
76 1t3j_A Mitofusin 1; coiled coi 43.4 70 0.0024 21.3 7.9 7 55-61 52-58 (96)
77 4i0x_B ESAT-6-like protein MAB 43.4 68 0.0023 21.1 7.9 51 39-92 28-80 (103)
78 1u2m_A Histone-like protein HL 42.8 13 0.00043 26.5 2.1 23 4-26 31-53 (143)
79 1qle_D Cytochrome AA3, ccytoch 42.6 26 0.00088 19.7 2.9 15 199-213 24-38 (43)
80 1deq_A Fibrinogen (alpha chain 42.6 83 0.0029 26.4 7.2 20 40-59 138-157 (390)
81 1gl2_A Endobrevin; membrane pr 42.5 55 0.0019 19.8 5.5 45 134-178 8-52 (65)
82 3fav_A ESAT-6-like protein ESX 42.5 68 0.0023 20.8 8.7 62 31-92 9-74 (101)
83 3arc_L Photosystem II reaction 41.9 37 0.0013 18.1 3.3 19 199-217 17-35 (37)
84 1m1j_C Fibrinogen gamma chain; 41.9 1.6E+02 0.0055 25.0 10.9 27 3-29 27-53 (409)
85 1urq_A M-tomosyn isoform; tran 41.9 57 0.002 19.8 6.8 49 136-184 5-53 (63)
86 2nps_A VAMP-4, vesicle-associa 41.0 64 0.0022 20.1 6.2 59 135-193 8-66 (74)
87 2lx0_A Membrane fusion protein 41.0 35 0.0012 17.1 3.3 18 201-219 11-28 (32)
88 1hs7_A Syntaxin VAM3; UP-and-D 40.3 80 0.0027 21.0 10.0 50 40-89 37-88 (97)
89 3fav_B ESAT-6, 6 kDa early sec 40.3 70 0.0024 20.3 8.5 60 32-91 8-71 (94)
90 3i00_A HIP-I, huntingtin-inter 40.0 91 0.0031 21.6 6.7 53 31-87 10-62 (120)
91 3ghg_C Fibrinogen gamma chain; 39.8 1.7E+02 0.006 24.8 9.0 27 3-29 27-53 (411)
92 3zbh_A ESXA; unknown function, 39.2 73 0.0025 20.3 9.3 61 31-91 11-75 (99)
93 3arc_X Photosystem II PSBX pro 38.1 49 0.0017 18.1 3.5 17 201-217 15-31 (39)
94 2y69_D Cytochrome C oxidase su 37.9 33 0.0011 25.4 3.7 24 197-220 101-124 (169)
95 3trt_A Vimentin; cytoskeleton, 36.5 77 0.0026 19.7 6.5 15 74-88 58-72 (77)
96 4ioe_A Secreted protein ESXB; 36.3 80 0.0027 19.9 9.5 61 29-89 9-73 (93)
97 2vs0_A Virulence factor ESXA; 36.1 82 0.0028 19.9 7.9 61 31-91 8-72 (97)
98 3ajm_A Programmed cell death p 35.9 1.5E+02 0.005 22.8 10.5 71 10-88 94-167 (213)
99 2v71_A Nuclear distribution pr 35.1 1.4E+02 0.0049 22.4 16.5 27 34-60 40-66 (189)
100 2klu_A T-cell surface glycopro 34.6 56 0.0019 20.2 3.7 12 199-210 13-24 (70)
101 4i0x_A ESAT-6-like protein MAB 32.8 98 0.0034 19.8 8.4 62 31-92 2-67 (94)
102 2l34_A TYRO protein tyrosine k 32.8 40 0.0014 17.7 2.5 7 201-207 15-21 (33)
103 3ghg_B Fibrinogen beta chain; 32.1 2.5E+02 0.0084 24.3 10.3 50 3-53 84-133 (461)
104 2q67_A Potassium channel prote 32.0 99 0.0034 20.8 5.3 37 181-217 7-43 (114)
105 2avr_X Adhesion A; antiparalle 31.8 1.3E+02 0.0044 20.8 11.9 83 4-94 10-97 (119)
106 1v64_A Nucleolar transcription 31.5 1.2E+02 0.004 20.3 6.8 54 50-107 43-96 (108)
107 2qyw_A Vesicle transport throu 31.5 1.2E+02 0.0039 20.2 5.5 10 65-74 45-54 (102)
108 3onj_A T-snare VTI1; helix, HA 31.4 1.1E+02 0.0038 20.1 6.8 50 43-92 34-86 (97)
109 1d7m_A Cortexillin I; coiled-c 31.3 1.1E+02 0.0038 20.0 9.6 66 12-78 23-94 (101)
110 1i6z_A BAG-family molecular ch 31.0 1.4E+02 0.0048 21.1 8.0 82 6-89 24-120 (135)
111 2wwb_C SEC61BETA, protein tran 30.3 13 0.00045 24.8 0.4 24 198-221 72-95 (96)
112 1uk5_A BAG-family molecular ch 30.2 1.3E+02 0.0044 20.6 5.4 40 46-85 59-102 (111)
113 2p2u_A HOST-nuclease inhibitor 30.1 1.6E+02 0.0055 21.5 8.2 64 35-107 19-82 (171)
114 3nmd_A CGMP dependent protein 30.0 1E+02 0.0036 19.3 6.7 24 36-59 40-63 (72)
115 3bz1_X Photosystem II PSBX pro 29.0 63 0.0022 18.7 3.1 17 201-217 25-41 (50)
116 2jo1_A Phospholemman; FXYD1, N 28.6 65 0.0022 20.1 3.3 11 208-218 29-39 (72)
117 1svf_B Protein (fusion glycopr 28.4 29 0.00098 18.9 1.5 19 168-186 17-35 (38)
118 1nkp_A C-MYC, MYC proto-oncoge 28.1 1.2E+02 0.0042 19.5 8.1 44 10-53 19-62 (88)
119 1v54_J Cytochrome C oxidase po 27.5 1E+02 0.0035 18.4 4.2 24 194-217 26-49 (59)
120 3oja_A Leucine-rich immune mol 27.3 1.8E+02 0.0061 24.7 7.3 16 42-57 413-428 (487)
121 1vcs_A Vesicle transport throu 27.3 57 0.0019 21.8 3.3 17 76-92 71-87 (102)
122 2nps_B Syntaxin 13, vesicle-as 26.0 1.2E+02 0.004 18.6 8.2 30 31-60 1-30 (71)
123 3tnu_A Keratin, type I cytoske 25.7 1.7E+02 0.0058 20.3 7.5 53 40-92 35-97 (131)
124 1nfn_A Apolipoprotein E3; lipi 25.6 1.9E+02 0.0066 21.5 6.4 17 5-21 26-42 (191)
125 2y69_J Cytochrome C oxidase po 25.6 1.1E+02 0.0037 19.6 4.2 24 194-217 47-70 (80)
126 4dnd_A Syntaxin-10, SYN10; str 25.4 1.8E+02 0.006 20.3 7.2 55 38-92 33-94 (130)
127 3oa7_A Head morphogenesis prot 25.2 2E+02 0.0068 21.8 6.1 48 46-94 26-73 (206)
128 3etw_A Adhesin A; antiparallel 25.1 1.7E+02 0.0059 20.2 11.6 87 5-94 11-97 (119)
129 1m62_A BAG-family molecular ch 25.0 1.5E+02 0.005 19.3 4.9 19 46-64 40-58 (87)
130 1q90_L Cytochrome B6F complex 24.3 85 0.0029 16.4 3.6 22 198-219 4-25 (32)
131 1ugo_A BCL2-associated athanog 24.1 1.3E+02 0.0045 20.1 4.5 19 46-64 47-65 (99)
132 1ez3_A Syntaxin-1A; three heli 24.1 1.7E+02 0.0058 19.7 11.1 25 36-60 54-78 (127)
133 4h22_A Leucine-rich repeat fli 23.6 1.7E+02 0.0059 19.6 6.9 56 41-107 35-90 (103)
134 3h6p_C ESAT-6-like protein ESX 23.4 1.3E+02 0.0045 19.1 4.6 54 39-92 16-73 (96)
135 3tnu_B Keratin, type II cytosk 23.0 1.9E+02 0.0065 19.9 7.4 23 70-92 73-95 (129)
136 3iox_A AGI/II, PA; alpha helix 23.0 3.8E+02 0.013 23.3 10.7 20 68-87 62-81 (497)
137 1m7k_A Silencer of death domai 22.9 1.7E+02 0.0059 19.4 4.9 20 45-64 52-71 (99)
138 1gd2_E Transcription factor PA 22.6 1.4E+02 0.005 18.4 5.4 13 76-88 54-66 (70)
139 3s8f_C Cytochrome C oxidase po 22.5 97 0.0033 16.4 4.0 20 198-217 9-28 (34)
140 1sz9_A PCF11 protein; RNA poly 22.3 2.1E+02 0.0072 20.2 6.1 55 13-67 6-60 (144)
141 1gax_A Valrs, valyl-tRNA synth 21.7 3.3E+02 0.011 25.4 8.4 57 34-90 798-860 (862)
142 2ww9_C Protein transport prote 21.4 56 0.0019 21.3 2.2 23 197-219 62-84 (87)
143 3zbh_A ESXA; unknown function, 21.2 1.6E+02 0.0056 18.5 7.2 57 38-94 25-85 (99)
144 1oed_B Acetylcholine receptor 21.1 1E+02 0.0034 24.2 4.1 24 193-216 217-240 (250)
145 2prs_A High-affinity zinc upta 21.0 2.8E+02 0.0094 21.8 6.8 48 47-94 124-171 (284)
146 1pq4_A Periplasmic binding pro 20.8 2.8E+02 0.0095 21.9 6.8 50 45-94 138-187 (291)
147 2o1e_A YCDH; alpha-beta protei 20.7 2.7E+02 0.0094 22.3 6.8 48 47-94 140-187 (312)
148 3cx3_A Lipoprotein; zinc-bindi 20.6 2.8E+02 0.0095 21.8 6.8 47 48-94 128-174 (284)
149 3gwk_C SAG1039, putative uncha 20.5 1.7E+02 0.0059 18.5 8.3 22 5-26 20-41 (98)
150 3htk_C E3 SUMO-protein ligase 20.5 3.2E+02 0.011 21.6 8.3 20 2-21 31-50 (267)
151 3gi1_A LBP, laminin-binding pr 20.5 2.9E+02 0.0098 21.8 6.8 48 47-94 129-176 (286)
152 3s4r_A Vimentin; alpha-helix, 20.4 1.9E+02 0.0064 18.9 10.4 26 66-91 50-75 (93)
153 4aj5_A SKA1, spindle and kinet 20.1 1.9E+02 0.0066 18.9 9.5 49 12-60 6-61 (91)
154 4hkr_A Calcium release-activat 20.0 1.1E+02 0.0039 23.3 3.9 33 187-220 106-140 (214)
No 1
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=99.84 E-value=2e-20 Score=131.59 Aligned_cols=89 Identities=25% Similarity=0.365 Sum_probs=85.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhHhhcc-ChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 027617 1 MSDVFERYERQYCEISANLSKKCTAAASL-DGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKS 79 (221)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~ 79 (221)
||++|++||++|+.+..+|..+|++++.. ++++|+..+++++..|++|+++|.+|+.|++++|++.|..|..|++.|+.
T Consensus 13 mSelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~ 92 (102)
T 2qyw_A 13 SSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRK 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999876 77999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 027617 80 DLNNLKSEVK 89 (221)
Q Consensus 80 ~l~~l~~~~~ 89 (221)
+++.++++|+
T Consensus 93 dL~~lk~elk 102 (102)
T 2qyw_A 93 DLAKLHREVR 102 (102)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHhhcC
Confidence 9999998873
No 2
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=99.83 E-value=2.7e-20 Score=130.97 Aligned_cols=94 Identities=28% Similarity=0.517 Sum_probs=90.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 027617 1 MSDVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSD 80 (221)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~ 80 (221)
+|++|++||++|+.+..+|..+|+.++..+|++|+..+.+++..|++|+++|.+|+.|++++|++.|..|..|++.|+.+
T Consensus 3 sSelFe~YE~df~~l~~~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~d 82 (102)
T 1vcs_A 3 SGSSGEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQE 82 (102)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcc
Q 027617 81 LNNLKSEVKRLVSG 94 (221)
Q Consensus 81 l~~l~~~~~~~~~~ 94 (221)
++.++++|+++...
T Consensus 83 L~~lk~elk~~~~~ 96 (102)
T 1vcs_A 83 MGKLETDFKRSRIA 96 (102)
T ss_dssp HHHHHHHTHHHHTC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987653
No 3
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=99.81 E-value=3.1e-19 Score=124.38 Aligned_cols=91 Identities=22% Similarity=0.345 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHH
Q 027617 3 DVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSL--QPNVKAVLLAKLREYKSD 80 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~--~~~~r~~~~~k~~~~r~~ 80 (221)
++|++||.+|+.++.+|..+|+++++.+|++|+..++.++..+++|.++|.+|+.|++++ |++.|..|..|++.|+.+
T Consensus 1 ~lF~~YE~df~~~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~d 80 (97)
T 3onj_A 1 SLLISYESDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKT 80 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHH-HHHHHHHHHc
Q 027617 81 LNN-LKSEVKRLVS 93 (221)
Q Consensus 81 l~~-l~~~~~~~~~ 93 (221)
++. ++++|+++..
T Consensus 81 l~~~lk~~lk~l~d 94 (97)
T 3onj_A 81 IQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 999 9999998764
No 4
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.77 E-value=5.4e-19 Score=118.81 Aligned_cols=80 Identities=34% Similarity=0.581 Sum_probs=76.0
Q ss_pred HHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHH
Q 027617 118 DQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNK 197 (221)
Q Consensus 118 ~~r~~~~~~~~~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk 197 (221)
++|++++.+++.+++++++|.+|.+++.|||++|.+|+.+|+.|||+|.++++++++++++++.|.++|+.|.||+.+||
T Consensus 2 ~qR~~Ll~~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK 81 (81)
T 2nps_C 2 SMRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR 81 (81)
T ss_dssp TTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999886
No 5
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.53 E-value=1.3e-14 Score=93.26 Aligned_cols=64 Identities=36% Similarity=0.602 Sum_probs=58.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHH
Q 027617 128 ERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSR 191 (221)
Q Consensus 128 ~~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~r 191 (221)
+.|++++++|.+|.+++.|||++|.+|+.+|+.|||+|.+++++++++++++++|.++|+.|.|
T Consensus 2 ~rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R 65 (65)
T 1gl2_C 2 SHMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR 65 (65)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence 4577899999999999999999999999999999999999999999999999999999999975
No 6
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=99.26 E-value=4.1e-11 Score=79.78 Aligned_cols=66 Identities=14% Similarity=0.292 Sum_probs=62.7
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHH
Q 027617 126 STERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSR 191 (221)
Q Consensus 126 ~~~~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~r 191 (221)
..+.++++.+++.++.+++.|++++|..|+..|+.|||+|.++...++++++++.+|.++|+.|.+
T Consensus 14 ~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~k 79 (79)
T 1n7s_C 14 ADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLGK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhcC
Confidence 457788999999999999999999999999999999999999999999999999999999999863
No 7
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=98.95 E-value=1.3e-09 Score=67.13 Aligned_cols=52 Identities=17% Similarity=0.371 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHH
Q 027617 138 KDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAM 189 (221)
Q Consensus 138 ~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i 189 (221)
.++.+++.|++++|..++..|..|||+|.++.+.++++++++..|.++|+.|
T Consensus 3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m 54 (54)
T 1nhl_A 3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence 5788999999999999999999999999999999999999999999998754
No 8
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=98.52 E-value=6.3e-07 Score=57.83 Aligned_cols=61 Identities=13% Similarity=0.210 Sum_probs=56.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHH
Q 027617 131 NQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSR 191 (221)
Q Consensus 131 ~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~r 191 (221)
..+..+-.++-+++.+++++|..++..|..|+|+|.++...++.++.++..|.+.++.+..
T Consensus 8 ~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~ 68 (70)
T 3b5n_C 8 QSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3556778899999999999999999999999999999999999999999999999998864
No 9
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=98.39 E-value=2.5e-07 Score=61.73 Aligned_cols=63 Identities=19% Similarity=0.277 Sum_probs=56.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHH
Q 027617 128 ERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMS 190 (221)
Q Consensus 128 ~~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~ 190 (221)
.....+..+..++.+++.+++++|..++..|..|+|+|.++...++.|+.++..|.+.++.|.
T Consensus 20 ~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~ 82 (83)
T 1l4a_C 20 QVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGME 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC--
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345567788899999999999999999999999999999999999999999999999887664
No 10
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.90 E-value=0.00035 Score=49.06 Aligned_cols=84 Identities=14% Similarity=0.121 Sum_probs=62.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 027617 131 NQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTA---MSRRMSRNKWIIGTVVAVL 207 (221)
Q Consensus 131 ~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~---i~rr~~~dk~Il~~ii~il 207 (221)
..-...+.+..+.+.|..++-.+...-...|.+.+.++..++..+..++..++.-++. ..++.++-+|+++++++++
T Consensus 17 ~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~i~ 96 (109)
T 3hd7_B 17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVIL 96 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHHHHH
Confidence 3444567777888888888899988999999999999999999999999999988854 4455555555555444444
Q ss_pred HHHHHHH
Q 027617 208 VIAIILI 214 (221)
Q Consensus 208 ~i~i~~v 214 (221)
++++.++
T Consensus 97 ~~i~~~~ 103 (109)
T 3hd7_B 97 GIIIAST 103 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4433333
No 11
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.78 E-value=0.00079 Score=45.63 Aligned_cols=63 Identities=10% Similarity=0.141 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHH
Q 027617 134 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRN 196 (221)
Q Consensus 134 ~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~d 196 (221)
.+.|...+..++|+.++-.+-.+.+-+..|.|....++.+++...-..=.+.-+.+.|++.-.
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwk 66 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWK 66 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888889999999999999999999999999888888877766666666666666544
No 12
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=97.04 E-value=0.00047 Score=49.13 Aligned_cols=79 Identities=11% Similarity=0.171 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 133 STDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAI 211 (221)
Q Consensus 133 ~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii~il~i~i 211 (221)
+.+.|...+..++|+..+-.+..+.+-+..|.|....++-+++...-..=.+--+.+.++++-.++-++++++++++++
T Consensus 31 ~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~ii 109 (119)
T 2kog_A 31 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAII 109 (119)
T ss_dssp SCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888889999999999999999999999999988888776666666667777776555444444433333333
No 13
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=96.42 E-value=0.05 Score=36.61 Aligned_cols=52 Identities=19% Similarity=0.337 Sum_probs=35.9
Q ss_pred HHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 155 LQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAII 212 (221)
Q Consensus 155 ~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii~il~i~i~ 212 (221)
++.|....+.|........ ..|+++=+.|-.+.++=++|+++++++++++|+
T Consensus 35 L~~L~~kt~~L~~~s~~F~------~~A~~l~rkmwwkn~K~~iii~~iv~~il~ii~ 86 (91)
T 3hd7_A 35 LSELDDRADALQAGASQFE------TSAAKLKRKYWWKNLKMMIILGVICAIILIIII 86 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777766555444 367777788989988888887766666555544
No 14
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=95.79 E-value=0.029 Score=35.19 Aligned_cols=61 Identities=11% Similarity=0.237 Sum_probs=49.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHH
Q 027617 130 VNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMS 190 (221)
Q Consensus 130 l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~ 190 (221)
+.++...|+.....+....++|.++-.+|..|...|..+...++.+...+..+++-+..+.
T Consensus 4 ~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~ 64 (65)
T 1gl2_D 4 MQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVD 64 (65)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456677888888899999999999999999999999999999999999999987776654
No 15
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=95.35 E-value=0.055 Score=35.62 Aligned_cols=65 Identities=12% Similarity=0.087 Sum_probs=55.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHH
Q 027617 129 RVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRM 193 (221)
Q Consensus 129 ~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~ 193 (221)
.+.++...|+.....+.....+|.+|-.+|..|.+.|..+...++.+...|..+++-+..+.++.
T Consensus 13 ~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~ 77 (82)
T 2nps_D 13 MGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMT 77 (82)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455667888888999999999999999999999999999999999999999999998888764
No 16
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.11 Score=32.46 Aligned_cols=56 Identities=13% Similarity=0.203 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHH
Q 027617 133 STDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTA 188 (221)
Q Consensus 133 ~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~ 188 (221)
....|.....++.-...+|.++-.+|..|.+.|.++..+++.++..+..+++-+.+
T Consensus 8 ~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 8 IDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44567777888888999999999999999999999999999999999998876654
No 17
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=95.17 E-value=0.087 Score=35.09 Aligned_cols=62 Identities=6% Similarity=0.148 Sum_probs=54.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHH
Q 027617 130 VNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSR 191 (221)
Q Consensus 130 l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~r 191 (221)
..+....|+.....+.....+|.++-.+|..|.+.|.++..+++.+...+..+++-++.+.+
T Consensus 24 e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~ 85 (87)
T 1sfc_D 24 ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG 85 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 34556678888889999999999999999999999999999999999999999888776644
No 18
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=94.97 E-value=0.15 Score=31.89 Aligned_cols=58 Identities=5% Similarity=0.165 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHH
Q 027617 132 QSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAM 189 (221)
Q Consensus 132 ~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i 189 (221)
+....|......+.....+|.++-.+|..|...|..+..+++.+...+..+++-++++
T Consensus 7 eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~l 64 (66)
T 1n7s_D 7 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455677778888889999999999999999999999999999999999998777654
No 19
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=94.34 E-value=0.12 Score=34.49 Aligned_cols=60 Identities=8% Similarity=0.217 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHH
Q 027617 132 QSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSR 191 (221)
Q Consensus 132 ~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~r 191 (221)
+....|+.....+.....+|.++-.+|..|.+.|.++..+++.++..+..+++-++.+.+
T Consensus 27 eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~ 86 (87)
T 1l4a_D 27 DMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLK 86 (87)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC-
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456678888888999999999999999999999999999999999999999887776543
No 20
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=92.85 E-value=2.7 Score=33.73 Aligned_cols=55 Identities=11% Similarity=0.074 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHH
Q 027617 133 STDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLT 187 (221)
Q Consensus 133 ~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~ 187 (221)
-...|....+.+.|..++=.+...=...|.+.|.++...+..+...+..|..-+.
T Consensus 198 R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~ 252 (267)
T 1dn1_B 198 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 252 (267)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777777777889999999999999998888887776664
No 21
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=91.20 E-value=2.4 Score=28.52 Aligned_cols=84 Identities=15% Similarity=0.172 Sum_probs=46.3
Q ss_pred Cc-hHHHHHHHHHHHHHHHHHHHHhHhhccC-h---HHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 027617 1 MS-DVFERYERQYCEISANLSKKCTAAASLD-G---ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLR 75 (221)
Q Consensus 1 Ms-~~f~~ye~e~~~~~~~i~~~l~~~~~~~-~---~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~ 75 (221)
|| +.|....++...-+..+...+..-.+.+ + .+-...+.+++..|+++...+.-++.. ++..=..=+.-+.
T Consensus 3 ~s~DPF~~V~~D~~~ql~~l~~~~~~~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~----~~~EI~~Rk~~v~ 78 (95)
T 2c5k_T 3 NSEDPFQQVVKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD----ENEDVSGREAQVK 78 (95)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS----TTCCCHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHH
Confidence 55 7999999999999999999876642211 1 223334445555555555444443322 3221112233345
Q ss_pred HHHHHHHHHHHHH
Q 027617 76 EYKSDLNNLKSEV 88 (221)
Q Consensus 76 ~~r~~l~~l~~~~ 88 (221)
+.+.+++.++..+
T Consensus 79 ~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 79 NIKQQLDALKLRF 91 (95)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666677777666
No 22
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=85.77 E-value=12 Score=29.91 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHH
Q 027617 134 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAM 189 (221)
Q Consensus 134 ~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i 189 (221)
...|....+.+.|..++=.+.-.=...|.+.|.+|...+..+..++..|..-|..-
T Consensus 216 ~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA 271 (279)
T 2xhe_B 216 HKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQA 271 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577777777788777777777778999999999999999999999888776543
No 23
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=84.33 E-value=10 Score=29.63 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=46.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHH
Q 027617 128 ERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLT 187 (221)
Q Consensus 128 ~~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~ 187 (221)
.........|......+.+..++-.++......|.+.+..+...+..+...+..+..-+.
T Consensus 205 ~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~ 264 (279)
T 3c98_B 205 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 264 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666778888888999999999999999999999999999888888766655554443
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.71 E-value=9 Score=33.59 Aligned_cols=25 Identities=4% Similarity=0.121 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhh
Q 027617 3 DVFERYERQYCEISANLSKKCTAAA 27 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~ 27 (221)
.+....+.+|...+++|+..+..+.
T Consensus 53 glLdkqErDltkrINELKnqLEdls 77 (562)
T 3ghg_A 53 GLIDEVNQDFTNRINKLKNSLFEYQ 77 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hhHHhhcCcHHHHHHHHHHHHHHHH
Confidence 5778899999999999999999984
No 25
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=82.59 E-value=7.7 Score=25.12 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=10.7
Q ss_pred Cc-hHHHHHHHHHHHHHHHH
Q 027617 1 MS-DVFERYERQYCEISANL 19 (221)
Q Consensus 1 Ms-~~f~~ye~e~~~~~~~i 19 (221)
|| ++|+..+..+...++.|
T Consensus 3 MS~ElleqLE~KIq~avdtI 22 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI 22 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 45 56666666555555544
No 26
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=82.47 E-value=2.2 Score=29.99 Aligned_cols=82 Identities=16% Similarity=0.244 Sum_probs=48.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 128 ERVNQSTDRIKDSRRTMLETEELGVS---ILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVV 204 (221)
Q Consensus 128 ~~l~~~~~~L~~s~~~~~ete~~g~~---~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~dk~Il~~ii 204 (221)
+.+.+....+++.+.++.+..+--.+ -++.|....+.|...-.. --..|+++-+.|-.+.++=++|+++++
T Consensus 33 d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~------F~k~A~kl~rkmwwkn~K~~iii~~iv 106 (119)
T 2kog_A 33 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQ------FETSAAKLKRKYWWKNLKMMIILGVIC 106 (119)
T ss_dssp SHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHH------HHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666665542211 134455555544433322 223567777888888888888888777
Q ss_pred HHHHHHHHHHH
Q 027617 205 AVLVIAIILIL 215 (221)
Q Consensus 205 ~il~i~i~~vl 215 (221)
++++++|++++
T Consensus 107 ~iii~iIi~~~ 117 (119)
T 2kog_A 107 AIILIIIIVYF 117 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhhhe
Confidence 77776665443
No 27
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=79.25 E-value=9.8 Score=24.16 Aligned_cols=59 Identities=10% Similarity=0.064 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHH
Q 027617 134 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRR 192 (221)
Q Consensus 134 ~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr 192 (221)
...+....+.+.|..++=.+...=...|.+.+.++...+..+..++..|..-+..=.+.
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 67 (77)
T 1jth_B 9 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466667777788888888777888999999999999999999999999888765553
No 28
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=79.16 E-value=4.6 Score=22.91 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 190 SRRMSRNKWIIGTVVAVLVIAIILIL 215 (221)
Q Consensus 190 ~rr~~~dk~Il~~ii~il~i~i~~vl 215 (221)
.|+..++-++=+..|++|++.|++++
T Consensus 24 arqnlqelfvnfclilicllli~iiv 49 (52)
T 1fjk_A 24 ARQNLQNLFINFCLILIFLLLICIIV 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666676777777776666554
No 29
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=74.92 E-value=22 Score=29.86 Aligned_cols=27 Identities=4% Similarity=0.079 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhcc
Q 027617 3 DVFERYERQYCEISANLSKKCTAAASL 29 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~ 29 (221)
.++.+.+++|..-+++|+..|..+...
T Consensus 56 g~Ldk~er~~~~rIe~L~~~L~~~s~s 82 (390)
T 1deq_A 56 GLIDEVDQDFTSRINKLRDSLFNYQKN 82 (390)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 467888899999999999988888544
No 30
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=73.41 E-value=18 Score=24.17 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHH
Q 027617 132 QSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMS 194 (221)
Q Consensus 132 ~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~ 194 (221)
.+.+.|...+..++|+..+-...++.+-...|.|....++..++...-..=.+--+.+.++++
T Consensus 27 ~~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmw 89 (96)
T 1sfc_A 27 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 89 (96)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888999999999999999999999999999988888877766655555566666543
No 31
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=72.50 E-value=15 Score=22.90 Aligned_cols=57 Identities=9% Similarity=0.123 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHH
Q 027617 136 RIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRR 192 (221)
Q Consensus 136 ~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr 192 (221)
.+....+.+.|..++=.+...=...|.+.|.++...+..+..++..+..-+..=.+-
T Consensus 7 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 63 (71)
T 2nps_B 7 AIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556667777777777777778999999999999999999999999887655443
No 32
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=70.74 E-value=15 Score=22.18 Aligned_cols=58 Identities=7% Similarity=0.091 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHH
Q 027617 135 DRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRR 192 (221)
Q Consensus 135 ~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr 192 (221)
+.|...+..++|+..+-...++.+-...|.|....++-.++...-..=.+--+.+.|+
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~ 59 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKA 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577778888888888888888888888888888877776665544444444444443
No 33
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=68.45 E-value=5.5 Score=25.70 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 027617 200 IGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 200 l~~ii~il~i~i~~vl~~k~ 219 (221)
++++.+++++++++++.+|+
T Consensus 15 ~gvi~gilliGllllliwk~ 34 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWKL 34 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555543
No 34
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=68.27 E-value=18 Score=22.12 Aligned_cols=53 Identities=9% Similarity=0.167 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHH
Q 027617 136 RIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTA 188 (221)
Q Consensus 136 ~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~ 188 (221)
.+.+..+.+.+..++=.+...=...|.+.|.++...+..+..++..+..-+..
T Consensus 10 ~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k 62 (65)
T 1gl2_B 10 SIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSR 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666677777777777777899999999999999999999999877653
No 35
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=66.10 E-value=21 Score=22.08 Aligned_cols=57 Identities=9% Similarity=0.053 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHH
Q 027617 134 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMS 190 (221)
Q Consensus 134 ~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~ 190 (221)
...+.+..+.+.|..++=.+...=...|.+.|.++...+..+..++..+..-+..=.
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 65 (69)
T 3b5n_B 9 HQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAV 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777888887787778889999999999999999999999998776543
No 36
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=65.70 E-value=33 Score=24.23 Aligned_cols=89 Identities=15% Similarity=0.152 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhcc-------ChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHH---HH
Q 027617 3 DVFERYERQYCEISANLSKKCTAAASL-------DGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVL---LA 72 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~---~~ 72 (221)
+.|-.-.+|....+..++..+.+.... +.++-..+-.++...|+.++..|..++.-+.-+..+ ...| ..
T Consensus 27 DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~n-p~kF~l~~~ 105 (130)
T 4dnd_A 27 DPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEAN-PGKFKLPAG 105 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHCCCHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHhcCCCHH
Confidence 578888888888888888888775211 112444555666666666666666666555532110 0111 23
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027617 73 KLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 73 k~~~~r~~l~~l~~~~~~~~ 92 (221)
.+.+.|.-+..++.++..++
T Consensus 106 Ei~~Rr~fV~~~r~~I~~mk 125 (130)
T 4dnd_A 106 DLQERKVFVERMREAVQEMK 125 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666554
No 37
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=65.63 E-value=20 Score=21.71 Aligned_cols=59 Identities=10% Similarity=0.181 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHH
Q 027617 134 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRR 192 (221)
Q Consensus 134 ~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr 192 (221)
.+.|...+..++++..+-...++.+-...|.|....++-.++...-..=.+--+.+.++
T Consensus 3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~ 61 (63)
T 1n7s_A 3 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677778888888888888888888888888888887777666544444444444433
No 38
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=65.08 E-value=21 Score=21.91 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHH
Q 027617 134 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTA 188 (221)
Q Consensus 134 ~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~ 188 (221)
...+.+..+.+.+..++=.+...=...|.+.+.++...+..+..++..|..-+..
T Consensus 11 ~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~k 65 (68)
T 1n7s_B 11 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777778888877777778899999999999999999999999877654
No 39
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=64.91 E-value=69 Score=27.74 Aligned_cols=27 Identities=7% Similarity=0.128 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhcc
Q 027617 3 DVFERYERQYCEISANLSKKCTAAASL 29 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~ 29 (221)
+.|..|+...+.-+++|+..+..++..
T Consensus 89 D~L~k~q~~V~~~LqeLe~~l~~lsn~ 115 (464)
T 1m1j_B 89 TTLLKQEKTVKPVLRDLKDRVAKFSDT 115 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHhHHHHHHHHHHHHhhh
Confidence 567889999999999999999998654
No 40
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=63.79 E-value=9.7 Score=21.45 Aligned_cols=19 Identities=32% Similarity=0.565 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027617 201 GTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 201 ~~ii~il~i~i~~vl~~k~ 219 (221)
+.+.+++++.+++++.+|+
T Consensus 15 gvi~~ivliGl~lLliwk~ 33 (43)
T 2k9j_B 15 SVMGAILLIGLAALLIWKL 33 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555554
No 41
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=62.04 E-value=1.9e+02 Score=31.69 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=62.4
Q ss_pred HHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHHHHH-----
Q 027617 122 RLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRN----- 196 (221)
Q Consensus 122 ~~~~~~~~l~~~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~~~d----- 196 (221)
.+......+......|...+..+.+.++-=...-.++..-...-.....++..+...+.+|.+++....--..+=
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~ 2094 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSE 2094 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHH
Confidence 344444556677777777777777777666665666666556666777888889999999999998887643221
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHh
Q 027617 197 --KWIIGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 197 --k~Il~~ii~il~i~i~~vl~~k~ 219 (221)
+--+-.+++=++++-++|.|...
T Consensus 2095 ~l~~~~~~L~GD~LLaaafisY~G~ 2119 (3245)
T 3vkg_A 2095 NFNTQMSTVVGDVVLASAFLAYIGF 2119 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHhccHHHHHHHHHHHHcCC
Confidence 11122334444555556666543
No 42
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=60.97 E-value=58 Score=25.52 Aligned_cols=15 Identities=7% Similarity=0.047 Sum_probs=5.6
Q ss_pred HHHhhHHHHHHHHHH
Q 027617 40 EIQTGLDEAESLIRK 54 (221)
Q Consensus 40 ~i~~~l~~~~~~l~~ 54 (221)
.++..+..+..-+..
T Consensus 36 ~le~~~~~l~~~~~~ 50 (256)
T 3na7_A 36 KALNDKEAKNKAILN 50 (256)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 43
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=60.47 E-value=35 Score=22.79 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhh
Q 027617 4 VFERYERQYCEISANLSKKCTAAA 27 (221)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~~ 27 (221)
.+++|-+.+..+=.+++..++.+.
T Consensus 5 yledyld~ie~LP~El~r~~~~ir 28 (104)
T 4afl_A 5 YLEHYLDSIENLPFELQRNFQLMR 28 (104)
T ss_dssp HHHHHHHSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHH
Confidence 445555555555555555444443
No 44
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=59.93 E-value=9.3 Score=21.69 Aligned_cols=8 Identities=0% Similarity=0.335 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 027617 210 AIILILYF 217 (221)
Q Consensus 210 ~i~~vl~~ 217 (221)
++.+++|.
T Consensus 28 ~l~~~~~~ 35 (44)
T 2jwa_A 28 GVVFGILI 35 (44)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhe
Confidence 33334443
No 45
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=55.58 E-value=18 Score=17.84 Aligned_cols=17 Identities=12% Similarity=0.407 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027617 203 VVAVLVIAIILILYFKL 219 (221)
Q Consensus 203 ii~il~i~i~~vl~~k~ 219 (221)
++++++.+...|+.|-|
T Consensus 8 ~lLIviav~aaVllylW 24 (26)
T 3j1r_A 8 LLLILIAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 46
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=55.45 E-value=1e+02 Score=26.60 Aligned_cols=89 Identities=11% Similarity=0.190 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhccChH------HHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC----hhHHHHHHH
Q 027617 3 DVFERYERQYCEISANLSKKCTAAASLDGE------RKKQKVSEIQTGLDEAESLIRKMDLEARSLQ----PNVKAVLLA 72 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~------~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~----~~~r~~~~~ 72 (221)
.+....+++|..-+++|+..+..+...+.+ .-.+.++.-....+.-++.+.++-.+++.-- ...-..+ +
T Consensus 54 glL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi-~ 132 (491)
T 1m1j_A 54 GIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQV-N 132 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 467888999999999999999998644321 1122333333344444444444444443211 1111112 4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027617 73 KLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 73 k~~~~r~~l~~l~~~~~~~~ 92 (221)
.++-++..+..+..+++++.
T Consensus 133 ~IrvLq~~l~~q~skIQRLE 152 (491)
T 1m1j_A 133 RIKALQNSIQEQVVEMKRLE 152 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554
No 47
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=54.66 E-value=50 Score=22.79 Aligned_cols=20 Identities=25% Similarity=0.384 Sum_probs=10.8
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 027617 1 MSDVFERYERQYCEISANLS 20 (221)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~ 20 (221)
||.++.-|+.++..+-.+|.
T Consensus 11 ~~~~~~~ye~~I~~LR~qid 30 (119)
T 3ol1_A 11 MSRLGDLYEEEMRELRRQVD 30 (119)
T ss_dssp --CCTHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 55566667766655555553
No 48
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=54.33 E-value=40 Score=21.55 Aligned_cols=51 Identities=8% Similarity=0.141 Sum_probs=37.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHHHHHH
Q 027617 36 QKVSEIQTGLDEAESLIRKMDLEARSL-QPNVKAVLLAKLREYKSDLNNLKS 86 (221)
Q Consensus 36 ~~~~~i~~~l~~~~~~l~~me~e~~~~-~~~~r~~~~~k~~~~r~~l~~l~~ 86 (221)
+++-.-+..+-=.+..+.++...+.++ +|+.|.+|+.-..+..++++..+.
T Consensus 23 Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~E~~~Vk~ 74 (78)
T 2rpa_A 23 ALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAKQVKD 74 (78)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334444566666777888888888887 567788999888888888776653
No 49
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=53.90 E-value=1e+02 Score=26.16 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027617 69 VLLAKLREYKSDLNNLKS 86 (221)
Q Consensus 69 ~~~~k~~~~r~~l~~l~~ 86 (221)
.+++++.++++.+.+++.
T Consensus 401 ~~~~~~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEA 418 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHH
Confidence 344444444444444443
No 50
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=53.49 E-value=20 Score=19.36 Aligned_cols=7 Identities=14% Similarity=-0.410 Sum_probs=2.8
Q ss_pred HHHHHHh
Q 027617 213 LILYFKL 219 (221)
Q Consensus 213 ~vl~~k~ 219 (221)
++-|.|+
T Consensus 26 ~ieYrk~ 32 (36)
T 1pi7_A 26 IIEGRGG 32 (36)
T ss_pred HHHHHHH
Confidence 3334443
No 51
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=52.81 E-value=14 Score=18.74 Aligned_cols=15 Identities=33% Similarity=0.341 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 027617 199 IIGTVVAVLVIAIIL 213 (221)
Q Consensus 199 Il~~ii~il~i~i~~ 213 (221)
+=+.+++++++.+++
T Consensus 10 ~NFt~vLI~vlLi~l 24 (31)
T 1jdm_A 10 LNFTIVLITVILMWL 24 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345556666655543
No 52
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=52.48 E-value=22 Score=17.95 Aligned_cols=25 Identities=12% Similarity=-0.007 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 191 RRMSRNKWIIGTVVAVLVIAIILIL 215 (221)
Q Consensus 191 rr~~~dk~Il~~ii~il~i~i~~vl 215 (221)
|+..++-++=+..+.+|+..+.+++
T Consensus 4 rqNlQ~LfvNfcLilICllLi~Iiv 28 (30)
T 1yod_A 4 RQNLQNLYINRCLREICQELKEIRA 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666667777766665554
No 53
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=52.43 E-value=49 Score=22.05 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=25.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhcCChhH--HHHHHHHHHHHHHHHHHHHHHH
Q 027617 39 SEIQTGLDEAESLIRKMDLEARSLQPNV--KAVLLAKLREYKSDLNNLKSEV 88 (221)
Q Consensus 39 ~~i~~~l~~~~~~l~~me~e~~~~~~~~--r~~~~~k~~~~r~~l~~l~~~~ 88 (221)
..++..-.+++.-+++|+.++..+..-. -..+++|..-...+|+.+...|
T Consensus 43 ~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~~y 94 (96)
T 1t3j_A 43 QQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSKQF 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444445555555555555443221 2246666666666666666655
No 54
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=50.22 E-value=48 Score=21.33 Aligned_cols=48 Identities=8% Similarity=0.063 Sum_probs=22.7
Q ss_pred HHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 40 EIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKR 90 (221)
Q Consensus 40 ~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~ 90 (221)
+++..+..+...+..|...+. ......|.....+++..+..+...+..
T Consensus 26 ~i~~~l~~L~~~~~~l~~~W~---G~a~~aF~~~~~~~~~~~~~~~~~L~~ 73 (98)
T 3gwk_C 26 QVTEVLNLLTQEQAVIDENWD---GSTFDSFEAQFNELSPKITEFAQLLED 73 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHBC---SSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccC---cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333 223345555555555555555554443
No 55
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=50.04 E-value=69 Score=23.06 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=34.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhcCChh--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 38 VSEIQTGLDEAESLIRKMDLEARSLQPN--VKAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 38 ~~~i~~~l~~~~~~l~~me~e~~~~~~~--~r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
+..++..++.++.-+++.+.++..+.|. ...+.+.-+.+.+.++.+.++.+.++.
T Consensus 71 ~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~ 127 (158)
T 3tul_A 71 TDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKAT 127 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666677777777776552 345666777778888888887777665
No 56
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=49.76 E-value=77 Score=23.53 Aligned_cols=41 Identities=5% Similarity=-0.014 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 50 SLIRKMDLEARSLQ--PNVKAVLLAKLREYKSDLNNLKSEVKR 90 (221)
Q Consensus 50 ~~l~~me~e~~~~~--~~~r~~~~~k~~~~r~~l~~l~~~~~~ 90 (221)
..-.+|..++..-+ +..-.++..++...+.++...+.+++.
T Consensus 96 akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~ 138 (175)
T 3lay_A 96 SKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDV 138 (175)
T ss_dssp HHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344554444322 222345666667777777666655543
No 57
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=49.63 E-value=18 Score=19.12 Aligned_cols=13 Identities=38% Similarity=0.664 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 027617 197 KWIIGTVVAVLVI 209 (221)
Q Consensus 197 k~Il~~ii~il~i 209 (221)
|+.++.+++++++
T Consensus 4 KL~lg~Gvl~LLv 16 (35)
T 2lk9_A 4 KLLLGIGILVLLI 16 (35)
T ss_dssp -CHHHHHHHHHHH
T ss_pred eeeecccHHHHHH
Confidence 3444444444333
No 58
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=48.95 E-value=42 Score=20.55 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=30.9
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhHhhccChH--HHHHHHHHHHhhH
Q 027617 4 VFERYER-QYCEISANLSKKCTAAASLDGE--RKKQKVSEIQTGL 45 (221)
Q Consensus 4 ~f~~ye~-e~~~~~~~i~~~l~~~~~~~~~--~~~~~~~~i~~~l 45 (221)
+..+|.. -|.....++.+.|..++..++. -+..++..+...+
T Consensus 15 ~~~~yrs~Gf~eC~~EV~rfLs~~eg~d~~d~~r~rLl~HL~~~~ 59 (64)
T 2db7_A 15 LAMDYRSLGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYA 59 (64)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHh
Confidence 4577885 9999999999999999877654 4555555554444
No 59
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=48.62 E-value=27 Score=19.13 Aligned_cols=19 Identities=42% Similarity=0.468 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027617 198 WIIGTVVAVLVIAIILILY 216 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~ 216 (221)
+|++++++-.+..|+++-|
T Consensus 14 lII~~vmaGiIG~IllI~y 32 (40)
T 1afo_A 14 LIIFGVMAGVIGTILLISY 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444443
No 60
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=48.32 E-value=27 Score=19.50 Aligned_cols=18 Identities=22% Similarity=0.619 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027617 201 GTVVAVLVIAIILILYFK 218 (221)
Q Consensus 201 ~~ii~il~i~i~~vl~~k 218 (221)
.++..++++++++++.+|
T Consensus 16 s~l~GLllL~li~~~LwK 33 (42)
T 2k1a_A 16 GVLGGLLLLTILVLAMWK 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444433333333
No 61
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=47.96 E-value=63 Score=22.04 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc----CChhHHHHHHHHHHHHHHHHH
Q 027617 7 RYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARS----LQPNVKAVLLAKLREYKSDLN 82 (221)
Q Consensus 7 ~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~----~~~~~r~~~~~k~~~~r~~l~ 82 (221)
.+...|..-...|...|+.++ +... ++++..-|..|+.++.. +|+-+...+..-+...+..++
T Consensus 35 ~F~~~F~~~~~~Ie~~l~~~~------~~~~-------ld~i~~~I~~Lqk~v~das~fLp~YD~R~~q~~i~~L~~~l~ 101 (111)
T 2l3l_A 35 FFVATFARERAAVEELLERAE------SVER-------LEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALA 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC------SHHH-------HHHHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCc------hhhH-------HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 344455555555655555432 2223 44444444555555543 465544445555555554444
Q ss_pred HHHH
Q 027617 83 NLKS 86 (221)
Q Consensus 83 ~l~~ 86 (221)
..+.
T Consensus 102 e~r~ 105 (111)
T 2l3l_A 102 ERRR 105 (111)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 62
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=47.69 E-value=39 Score=19.53 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027617 188 AMSRRMSRNKWIIGTVVAVLVIA 210 (221)
Q Consensus 188 ~i~rr~~~dk~Il~~ii~il~i~ 210 (221)
.|.||..-+.+.+..+-++...+
T Consensus 8 dm~RRqfln~l~~G~~a~~a~~~ 30 (49)
T 1q90_R 8 DMNKRNIMNLILAGGAGLPITTL 30 (49)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999988875544443333
No 63
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=47.24 E-value=60 Score=21.56 Aligned_cols=16 Identities=6% Similarity=0.206 Sum_probs=7.2
Q ss_pred HHHHHHHhhHHHHHHH
Q 027617 36 QKVSEIQTGLDEAESL 51 (221)
Q Consensus 36 ~~~~~i~~~l~~~~~~ 51 (221)
..+++++....++...
T Consensus 25 ~~irelD~~~~~~~~~ 40 (104)
T 4afl_A 25 QLMRDLDQRTEDLKAE 40 (104)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555444443333
No 64
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=46.33 E-value=57 Score=21.01 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=14.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhc
Q 027617 37 KVSEIQTGLDEAESLIRKMDLEARS 61 (221)
Q Consensus 37 ~~~~i~~~l~~~~~~l~~me~e~~~ 61 (221)
.+..++.++++|=+.|..|..|+..
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieE 31 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEE 31 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666555553
No 65
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=46.33 E-value=55 Score=20.87 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHH
Q 027617 133 STDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMS 190 (221)
Q Consensus 133 ~~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~ 190 (221)
-...+....+.+.|..++=.+.-.=...|.+.|.++...+..+..++..+..-+..=.
T Consensus 19 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 76 (83)
T 1sfc_B 19 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777888888887778889999999999999999999999988776543
No 66
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=45.98 E-value=1e+02 Score=27.06 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 46 DEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVK 89 (221)
Q Consensus 46 ~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~ 89 (221)
++++..+..|+.++.+-- +..+.|+..|+..+.+++.|+.++.
T Consensus 113 ~ELRRrIqyLKekVdnQl-snIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666777666422 2334666666777777776666653
No 67
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=44.90 E-value=22 Score=25.70 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 027617 197 KWIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 197 k~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
|-|++++++++.+.++++++.+.+
T Consensus 79 K~v~g~v~~~i~~s~~~f~~~r~~ 102 (147)
T 1v54_D 79 KTVVGAAMFFIGFTALLLIWEKHY 102 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447777777777777777776643
No 68
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=44.79 E-value=68 Score=21.51 Aligned_cols=52 Identities=25% Similarity=0.292 Sum_probs=29.2
Q ss_pred HHHhhHHHHHHHHHHHHHHhhcCChhH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 40 EIQTGLDEAESLIRKMDLEARSLQPNV--KAVLLAKLREYKSDLNNLKSEVKRL 91 (221)
Q Consensus 40 ~i~~~l~~~~~~l~~me~e~~~~~~~~--r~~~~~k~~~~r~~l~~l~~~~~~~ 91 (221)
.++..+.+++.++.+|+..--.+..+. -..-..-++.|+..|+..+..+..+
T Consensus 31 sFEeal~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~L~~AE~kV~~L 84 (100)
T 1vp7_A 31 DFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVL 84 (100)
T ss_dssp SHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777764211111221 1223344566777777777777665
No 69
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=44.76 E-value=58 Score=20.72 Aligned_cols=15 Identities=7% Similarity=-0.135 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 027617 9 ERQYCEISANLSKKC 23 (221)
Q Consensus 9 e~e~~~~~~~i~~~l 23 (221)
...++..+..+...+
T Consensus 13 R~~lk~~f~~Lr~~v 27 (80)
T 1nlw_A 13 RAHLRLSLEKLKGLV 27 (80)
T ss_dssp HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHc
Confidence 344555555555544
No 70
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.67 E-value=56 Score=20.51 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 69 VLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 69 ~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
.+..++.+...++..|+.++.+++
T Consensus 44 eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 44 ELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555556666666666665543
No 71
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=50.57 E-value=4.6 Score=22.20 Aligned_cols=12 Identities=17% Similarity=0.681 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 027617 206 VLVIAIILILYF 217 (221)
Q Consensus 206 il~i~i~~vl~~ 217 (221)
++++++.+++|.
T Consensus 22 iisLIiLi~~w~ 33 (39)
T 2l6w_A 22 IISLIILIMLWQ 33 (39)
Confidence 333333444443
No 72
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=44.45 E-value=18 Score=23.11 Aligned_cols=58 Identities=7% Similarity=0.159 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHH
Q 027617 135 DRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRR 192 (221)
Q Consensus 135 ~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr 192 (221)
+.|...+..++|+..+-...++.+-...|.|....++..++...-..=.+--+.+.++
T Consensus 15 d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk 72 (80)
T 1l4a_A 15 KRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRK 72 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888888888888888888888777776655443333333444433
No 73
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=44.42 E-value=29 Score=20.28 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027617 198 WIIGTVVAVLVIAIILIL 215 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl 215 (221)
+..|+.+++.++++++.+
T Consensus 31 ~~k~gt~~~~~~ll~lai 48 (51)
T 1m56_D 31 MVTWAAVVIVAALIFLAL 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 74
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=44.23 E-value=52 Score=23.32 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 179 VSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 179 l~~s~~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl~~ 217 (221)
+...+++++.+.+-.....+++++++++++++++.++|.
T Consensus 8 ~~~l~rl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 46 (148)
T 3vou_A 8 ILTLKRMLKACLRAWKDKEFQVLFVLTFLTLTSGTIFYS 46 (148)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777776665555555556666666666655554
No 75
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=43.75 E-value=25 Score=19.03 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027617 195 RNKWIIGTVVAVLVIAII 212 (221)
Q Consensus 195 ~dk~Il~~ii~il~i~i~ 212 (221)
+=|++.|.++++++.+++
T Consensus 3 tLKi~Vy~vV~ffvsLFi 20 (38)
T 3arc_I 3 TLKITVYIVVTFFVLLFV 20 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eEEeeehhHHHHHHHHHH
Confidence 447777777776665544
No 76
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=43.44 E-value=70 Score=21.28 Aligned_cols=7 Identities=14% Similarity=0.226 Sum_probs=2.7
Q ss_pred HHHHhhc
Q 027617 55 MDLEARS 61 (221)
Q Consensus 55 me~e~~~ 61 (221)
|+.|+..
T Consensus 52 L~~EI~~ 58 (96)
T 1t3j_A 52 LEEEIAR 58 (96)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 77
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=43.40 E-value=68 Score=21.06 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=26.7
Q ss_pred HHHHhhHHHHHHHHHHHHHH--hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 39 SEIQTGLDEAESLIRKMDLE--ARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 39 ~~i~~~l~~~~~~l~~me~e--~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
..|+..|++++..+..+... +. ......|.....+.+....++...|..+.
T Consensus 28 ~~i~~~l~~L~~~v~~L~~~g~W~---G~A~~ay~~~~~~W~~~a~~l~~~L~~i~ 80 (103)
T 4i0x_B 28 EFVTENLDQLESRAQKLVQSGQWA---GAAAAAYSQAHKEWMDAARELVEGLSQME 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCee---chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556665555555544 33 33344555555555555555555554443
No 78
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=42.84 E-value=13 Score=26.45 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHh
Q 027617 4 VFERYERQYCEISANLSKKCTAA 26 (221)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~ 26 (221)
.|..|..++.....+++.....+
T Consensus 31 ~~~~~~~el~~~~~el~~~~~~l 53 (143)
T 1u2m_A 31 EFKGRASELQRMETDLQAKMKKL 53 (143)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444433
No 79
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=42.60 E-value=26 Score=19.70 Aligned_cols=15 Identities=7% Similarity=0.166 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 027617 199 IIGTVVAVLVIAIIL 213 (221)
Q Consensus 199 Il~~ii~il~i~i~~ 213 (221)
..|+.+++.++++++
T Consensus 24 ~k~gt~~~~~~ll~m 38 (43)
T 1qle_D 24 ATWVSILSIAVLVFL 38 (43)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 80
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=42.59 E-value=83 Score=26.40 Aligned_cols=20 Identities=5% Similarity=0.277 Sum_probs=8.3
Q ss_pred HHHhhHHHHHHHHHHHHHHh
Q 027617 40 EIQTGLDEAESLIRKMDLEA 59 (221)
Q Consensus 40 ~i~~~l~~~~~~l~~me~e~ 59 (221)
-++..|+....-+++||..+
T Consensus 138 ~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 138 LLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 81
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=42.52 E-value=55 Score=19.82 Aligned_cols=45 Identities=11% Similarity=0.262 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhh
Q 027617 134 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDN 178 (221)
Q Consensus 134 ~~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~ 178 (221)
.+.|...+..++|+..+-...++.+-...|.|....++-.++...
T Consensus 8 ~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~ 52 (65)
T 1gl2_A 8 NDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEAT 52 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345666777777787888887888888888887777666655433
No 82
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=42.47 E-value=68 Score=20.81 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 31 GERKKQKVSEIQTGLDEAESLIRKMDLEARSLQ----PNVKAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 31 ~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~----~~~r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
+++-.....++...-.+++..+..|+..+..+. ......|.....+++.....+...|..+.
T Consensus 9 ~~~l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~ 74 (101)
T 3fav_A 9 AATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEIS 74 (101)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556667777778888888887776654 33455666666666666666666655543
No 83
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=41.93 E-value=37 Score=18.13 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027617 199 IIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 199 Il~~ii~il~i~i~~vl~~ 217 (221)
+.|+.++++++++.|--|+
T Consensus 17 Ly~GLLlifvlavlFssyf 35 (37)
T 3arc_L 17 LYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhc
Confidence 3456666666666555543
No 84
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=41.92 E-value=1.6e+02 Score=24.97 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhcc
Q 027617 3 DVFERYERQYCEISANLSKKCTAAASL 29 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~ 29 (221)
+.+..|+..+..-+.+|+..+.++.+.
T Consensus 27 d~L~k~e~~V~~~l~~LE~~l~elsn~ 53 (409)
T 1m1j_C 27 DFFNKYRLTTDGELLEIEGLLQQATNS 53 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 456777777777777777777766543
No 85
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=41.90 E-value=57 Score=19.80 Aligned_cols=49 Identities=10% Similarity=-0.018 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHH
Q 027617 136 RIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKK 184 (221)
Q Consensus 136 ~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~ 184 (221)
.|...+..+.++.++.....+.+.+-.|.|....++..++...-..=.+
T Consensus 5 ~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~ 53 (63)
T 1urq_A 5 GIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSK 53 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677788888888888888888888888888887776655444333
No 86
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=41.01 E-value=64 Score=20.09 Aligned_cols=59 Identities=15% Similarity=0.212 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHhHHHHhcchhchhhhHHHHHHHHHHHHHHH
Q 027617 135 DRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRM 193 (221)
Q Consensus 135 ~~L~~s~~~~~ete~~g~~~~~~L~~Qre~l~~~~~~~~~i~~~l~~s~~~l~~i~rr~ 193 (221)
+.|...+..++|+..+-...++.+-...|.|....++-.++...-..=.+--+.+.|++
T Consensus 8 d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ 66 (74)
T 2nps_A 8 DKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQM 66 (74)
T ss_dssp SSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777778888888887777777766655554444445555444
No 87
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=40.96 E-value=35 Score=17.07 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 027617 201 GTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 201 ~~ii~il~i~i~~vl~~k~ 219 (221)
.++.++.+++++ ++.+|+
T Consensus 11 glvalltflafg-fwlfky 28 (32)
T 2lx0_A 11 GLVALLTFLAFG-FWLFKY 28 (32)
T ss_dssp HHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHH
Confidence 333333444443 444444
No 88
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=40.31 E-value=80 Score=21.02 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=26.1
Q ss_pred HHHhhHH-HHHHHHHHHHHHhhcCCh-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 40 EIQTGLD-EAESLIRKMDLEARSLQP-NVKAVLLAKLREYKSDLNNLKSEVK 89 (221)
Q Consensus 40 ~i~~~l~-~~~~~l~~me~e~~~~~~-~~r~~~~~k~~~~r~~l~~l~~~~~ 89 (221)
++...|+ ++...+.+|.-+++.++. +.+..+...+......+..+++.+.
T Consensus 37 ~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~~qr~y~ 88 (97)
T 1hs7_A 37 ELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQSLQQSYN 88 (97)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555 555555666666654443 2344555555555555555555443
No 89
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=40.26 E-value=70 Score=20.32 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 32 ERKKQKVSEIQTGLDEAESLIRKMDLEARSLQ----PNVKAVLLAKLREYKSDLNNLKSEVKRL 91 (221)
Q Consensus 32 ~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~----~~~r~~~~~k~~~~r~~l~~l~~~~~~~ 91 (221)
+.-......+...-.+++..+..|+..+..+. ......|.....+++.....+...|..+
T Consensus 8 ~~l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i 71 (94)
T 3fav_B 8 AGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNL 71 (94)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455556666666666666666665543 2233455555555555555555555444
No 90
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=39.95 E-value=91 Score=21.59 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 027617 31 GERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSE 87 (221)
Q Consensus 31 ~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~ 87 (221)
+++|..+|..+...++.+..-++.+-.|.+..+. .|..++.....++..-+..
T Consensus 10 ~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~----ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 10 KDEKDHLIERLYREISGLKAQLENMKTESQRVVL----QLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888888777765443 3555555555555555433
No 91
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=39.83 E-value=1.7e+02 Score=24.79 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhcc
Q 027617 3 DVFERYERQYCEISANLSKKCTAAASL 29 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~ 29 (221)
+.+..|+...+.-+++++..|..+.+.
T Consensus 27 d~L~kye~~V~~~l~~L~~~l~~isn~ 53 (411)
T 3ghg_C 27 DFLSTYQTKVDKDLQSLEDILHQVENK 53 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchhhHHHHHHHHHHHHHhh
Confidence 567889999999999999988888543
No 92
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=39.18 E-value=73 Score=20.25 Aligned_cols=61 Identities=8% Similarity=0.210 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc----CChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 31 GERKKQKVSEIQTGLDEAESLIRKMDLEARS----LQPNVKAVLLAKLREYKSDLNNLKSEVKRL 91 (221)
Q Consensus 31 ~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~----~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~ 91 (221)
|++-......+...-.+++..+..|...+.. ........|.....+++..+..+...+..+
T Consensus 11 ~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i 75 (99)
T 3zbh_A 11 PEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEV 75 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443 233445566666666666666666555444
No 93
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=38.08 E-value=49 Score=18.10 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027617 201 GTVVAVLVIAIILILYF 217 (221)
Q Consensus 201 ~~ii~il~i~i~~vl~~ 217 (221)
++.+++.++++.++...
T Consensus 15 aG~vvvv~i~~ali~VS 31 (39)
T 3arc_X 15 SGAVVLGLTFAVLIAIS 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHheeEe
Confidence 34443433554444443
No 94
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=37.88 E-value=33 Score=25.45 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 027617 197 KWIIGTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 197 k~Il~~ii~il~i~i~~vl~~k~~ 220 (221)
|-|++++++++.+.++++++.+.+
T Consensus 101 K~V~ggv~~~i~~s~~~f~~~r~~ 124 (169)
T 2y69_D 101 KTVVGAAMFFIGFTALLLIWEKHY 124 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447777777777777777776643
No 95
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=36.47 E-value=77 Score=19.69 Aligned_cols=15 Identities=33% Similarity=0.570 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 027617 74 LREYKSDLNNLKSEV 88 (221)
Q Consensus 74 ~~~~r~~l~~l~~~~ 88 (221)
+.+++..+..|+.++
T Consensus 58 i~elrr~iq~L~~el 72 (77)
T 3trt_A 58 STEYRRQVQSLTMEV 72 (77)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 96
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=36.32 E-value=80 Score=19.88 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=36.7
Q ss_pred cChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 29 LDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQ----PNVKAVLLAKLREYKSDLNNLKSEVK 89 (221)
Q Consensus 29 ~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~----~~~r~~~~~k~~~~r~~l~~l~~~~~ 89 (221)
.+|++-......+...-.+++..+..|...+..+. ......+.....+.+..+..+...+.
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~ 73 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILE 73 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666777777777777777777776653 34455666655444444444444443
No 97
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=36.10 E-value=82 Score=19.91 Aligned_cols=61 Identities=7% Similarity=0.193 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC----ChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 31 GERKKQKVSEIQTGLDEAESLIRKMDLEARSL----QPNVKAVLLAKLREYKSDLNNLKSEVKRL 91 (221)
Q Consensus 31 ~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~----~~~~r~~~~~k~~~~r~~l~~l~~~~~~~ 91 (221)
|++-......+...-.+++..+..|...+..+ .......|.....+++..+..+...+..+
T Consensus 8 ~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i 72 (97)
T 2vs0_A 8 PEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEI 72 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444332 12223345555555555555555444443
No 98
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=35.94 E-value=1.5e+02 Score=22.75 Aligned_cols=71 Identities=10% Similarity=0.125 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhHhhccChHHHHH---HHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 027617 10 RQYCEISANLSKKCTAAASLDGERKKQ---KVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKS 86 (221)
Q Consensus 10 ~e~~~~~~~i~~~l~~~~~~~~~~~~~---~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~ 86 (221)
+++..--..+..+|+++|..=++ |.. ++++|-..|+++-+.++. -....|+.. +..+.+.|.++-.+.+
T Consensus 94 qel~~rA~~LK~iLSrIPdEI~d-R~~FL~tIKeIAsaIKklLDAvn~---v~~~~~~~~----k~~le~~KreFVkySK 165 (213)
T 3ajm_A 94 QDLNEKARALKQILSKIPDEIND-RVRFLQTIKDIASAIKELLDTVNN---VFKKYQYQN----RRALEHQKKEFVKYSK 165 (213)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHH---HHHHSCCSC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhhcc-hHHHHHHHHHHHHHHHHHHHHHHH---HHhhcchhH----HHHHHHHHHHHHHHhh
Confidence 45555557778888888854333 333 344444444444333333 333445543 3334455555555555
Q ss_pred HH
Q 027617 87 EV 88 (221)
Q Consensus 87 ~~ 88 (221)
.|
T Consensus 166 rF 167 (213)
T 3ajm_A 166 SF 167 (213)
T ss_dssp HH
T ss_pred Hh
Confidence 55
No 99
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=35.10 E-value=1.4e+02 Score=22.40 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 027617 34 KKQKVSEIQTGLDEAESLIRKMDLEAR 60 (221)
Q Consensus 34 ~~~~~~~i~~~l~~~~~~l~~me~e~~ 60 (221)
.+.+-.+++..|..++.-+..+...+.
T Consensus 40 SrELE~ELE~eL~~~Ek~~~~L~~~~~ 66 (189)
T 2v71_A 40 SRELEAELEAQLVQAEQRNRDLQADNQ 66 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556555555555544443
No 100
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=34.59 E-value=56 Score=20.18 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 027617 199 IIGTVVAVLVIA 210 (221)
Q Consensus 199 Il~~ii~il~i~ 210 (221)
++.+++.+++++
T Consensus 13 vlGg~~~lll~~ 24 (70)
T 2klu_A 13 VLGGVAGLLLFI 24 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhHHHHHHHHH
Confidence 444444444443
No 101
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=32.81 E-value=98 Score=19.85 Aligned_cols=62 Identities=8% Similarity=0.019 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 31 GERKKQKVSEIQTGLDEAESLIRKMDLEARSLQ----PNVKAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 31 ~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~----~~~r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
|++-......+...-.+++..+..|+..+..+. ......|.....+++....++...|..+.
T Consensus 2 peel~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~Aa~af~~~~~~w~~~a~~l~~~L~~i~ 67 (94)
T 4i0x_A 2 IDEVGALSKFAASLADQMRAGSNSLDRDVQSLFGVWKGSAADAYRSGWDEMQDGATKVWNALTDIA 67 (94)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555666666677777777777766554 34455677777777777776666665544
No 102
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=32.78 E-value=40 Score=17.70 Aligned_cols=7 Identities=29% Similarity=0.591 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 027617 201 GTVVAVL 207 (221)
Q Consensus 201 ~~ii~il 207 (221)
.-+++.+
T Consensus 15 gdi~~t~ 21 (33)
T 2l34_A 15 GDLVLTV 21 (33)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 103
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=32.11 E-value=2.5e+02 Score=24.25 Aligned_cols=50 Identities=10% Similarity=0.111 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHHHHHHHH
Q 027617 3 DVFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIR 53 (221)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~ 53 (221)
+.+..|+...+.-+++++..|..+++.+. +....+..++..+...+....
T Consensus 84 d~L~kye~~V~~dl~~Le~~l~~isn~Ts-~a~~~v~~ik~s~~~~q~~~~ 133 (461)
T 3ghg_B 84 EALLQQERPIRNSVDELNNNVEAVSQTSS-SSFQYMYLLKDLWQKRQKQVK 133 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchhhHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhccccCCCC
Confidence 56889999999999999999999975432 334455555555444443333
No 104
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=32.04 E-value=99 Score=20.81 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 181 KSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 181 ~s~~~l~~i~rr~~~dk~Il~~ii~il~i~i~~vl~~ 217 (221)
...++++.+.+......+...+++++++++++.++|.
T Consensus 7 ~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 43 (114)
T 2q67_A 7 TLKRMLRACLRAWKDKEFQVLFVLTILTLISGTIFYS 43 (114)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456666665554444444444444444555555544
No 105
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=31.82 E-value=1.3e+02 Score=20.85 Aligned_cols=83 Identities=11% Similarity=0.226 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc---C-Ch-hHHHHHHHHHHHHH
Q 027617 4 VFERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARS---L-QP-NVKAVLLAKLREYK 78 (221)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~---~-~~-~~r~~~~~k~~~~r 78 (221)
.|+..|.+|..|...=..... +.++....+...|.+...+-...+--+.. + +. -.+..|...++.|+
T Consensus 10 ~l~~LEaeyq~L~~kE~qryn--------qeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk 81 (119)
T 2avr_X 10 ELQALDAEYQNLANQEEARFN--------EERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYE 81 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 455666666555543333322 23333344444444443333333222221 1 22 23788999999999
Q ss_pred HHHHHHHHHHHHHHcc
Q 027617 79 SDLNNLKSEVKRLVSG 94 (221)
Q Consensus 79 ~~l~~l~~~~~~~~~~ 94 (221)
.-+..|..+.+.....
T Consensus 82 ~~~~~Ld~eI~~qe~i 97 (119)
T 2avr_X 82 DALKKLEAEMEQQKAV 97 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999888765533
No 106
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=31.51 E-value=1.2e+02 Score=20.30 Aligned_cols=54 Identities=11% Similarity=0.021 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhHhhhc
Q 027617 50 SLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLES 107 (221)
Q Consensus 50 ~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~ 107 (221)
++-..+-..++.++..++..|.......+..+..--..+..-. .+.+|.+|++.
T Consensus 43 eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~----~~~~r~~~~~~ 96 (108)
T 1v64_A 43 ERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESL----PEEEQQRVLGE 96 (108)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----CHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CHHHHHHHHhc
Confidence 3445566678889999999998877655544444333333221 13468888754
No 107
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=31.48 E-value=1.2e+02 Score=20.23 Aligned_cols=10 Identities=20% Similarity=0.262 Sum_probs=3.9
Q ss_pred hHHHHHHHHH
Q 027617 65 NVKAVLLAKL 74 (221)
Q Consensus 65 ~~r~~~~~k~ 74 (221)
..|......+
T Consensus 45 e~rk~~i~~i 54 (102)
T 2qyw_A 45 EEKKKLVRDF 54 (102)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444333333
No 108
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=31.45 E-value=1.1e+02 Score=20.06 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHhhcCChhHHHH--HHHHHHHHHHHHHHHHHHHHH-HH
Q 027617 43 TGLDEAESLIRKMDLEARSLQPNVKAV--LLAKLREYKSDLNNLKSEVKR-LV 92 (221)
Q Consensus 43 ~~l~~~~~~l~~me~e~~~~~~~~r~~--~~~k~~~~r~~l~~l~~~~~~-~~ 92 (221)
..+.+++..++..+..+..|.-..+.. =-..=..|...+..|++++.+ ++
T Consensus 34 ~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk 86 (97)
T 3onj_A 34 TTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIK 86 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666666555444433 112224566666666666665 54
No 109
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=31.33 E-value=1.1e+02 Score=19.97 Aligned_cols=66 Identities=26% Similarity=0.352 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHHHHHHHH-----HHHHHhhcCCh-hHHHHHHHHHHHHH
Q 027617 12 YCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIR-----KMDLEARSLQP-NVKAVLLAKLREYK 78 (221)
Q Consensus 12 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~-----~me~e~~~~~~-~~r~~~~~k~~~~r 78 (221)
+-..-.++.+.+..+... .++|...+.+++..|+++-..++ .|+.|.|...+ .+++.+.-++++..
T Consensus 23 L~kQk~eL~~~l~~l~~e-~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~RLsKtEKDkAiLELkLaE~~ 94 (101)
T 1d7m_A 23 LIKQKDQLNSLLASLESE-GAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKTEKDRAILELKLAEAI 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Confidence 334445555555555432 45788888888888877754443 34444443222 12344444444443
No 110
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=31.05 E-value=1.4e+02 Score=21.11 Aligned_cols=82 Identities=10% Similarity=0.124 Sum_probs=40.5
Q ss_pred HHHHHHHHH---HHHHHHHHHhHhhccC------hHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChh------HHHHH
Q 027617 6 ERYERQYCE---ISANLSKKCTAAASLD------GERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPN------VKAVL 70 (221)
Q Consensus 6 ~~ye~e~~~---~~~~i~~~l~~~~~~~------~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~------~r~~~ 70 (221)
.+++..... .++++...+..+...- .+.-...-+.+...-.++-..+..|+. -.+|++ .|..+
T Consensus 24 ~dveksv~~~~k~l~~l~~el~~iekGFL~k~l~~ea~~kl~Krik~~~E~~Mk~LE~LDs--~~ip~~~~~~R~kRK~l 101 (135)
T 1i6z_A 24 KDLEVSAEKIANHLQELNKELSGIQQGFLAKELQAEALCKLDRKVKATIEQFMKILEEIDT--MVLPEQFKDSRLKRKNL 101 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCccHHHHHHHHHHH
Confidence 344444444 5555666666664321 132233334444444455555555442 234542 24456
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027617 71 LAKLREYKSDLNNLKSEVK 89 (221)
Q Consensus 71 ~~k~~~~r~~l~~l~~~~~ 89 (221)
..++..+-...+.+...+.
T Consensus 102 V~~iQ~~L~~~D~l~~~~~ 120 (135)
T 1i6z_A 102 VKKVQVFLAECDTVEQYIC 120 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665
No 111
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=30.29 E-value=13 Score=24.85 Aligned_cols=24 Identities=8% Similarity=0.160 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 027617 198 WIIGTVVAVLVIAIILILYFKLAK 221 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~~~ 221 (221)
.++++.+++.++++++-+|.||.|
T Consensus 72 ~VLv~sl~Fi~~Vi~Lhi~~K~~r 95 (96)
T 2wwb_C 72 PVLVMSLLFIASVFMLHIWGKYTR 95 (96)
T ss_dssp SHHHHHHHHHHHHHHHSCSSSCCC
T ss_pred EehhhHHHHHHHHHHHHHhhhhcc
Confidence 344444444444455556666543
No 112
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=30.22 E-value=1.3e+02 Score=20.56 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhhcCChh----HHHHHHHHHHHHHHHHHHHH
Q 027617 46 DEAESLIRKMDLEARSLQPN----VKAVLLAKLREYKSDLNNLK 85 (221)
Q Consensus 46 ~~~~~~l~~me~e~~~~~~~----~r~~~~~k~~~~r~~l~~l~ 85 (221)
..+.+++.+.=+.+.++++. .|..-+.-++....-++.|.
T Consensus 59 ~~L~E~L~k~LLkLD~IeteG~~~vR~aRK~aVk~iQ~~l~~LD 102 (111)
T 1uk5_A 59 LMIEEYLTKELLALDSVDPEGRADVRQARRDGVRKVQTILEKLE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555432 23333344444444444444
No 113
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=30.12 E-value=1.6e+02 Score=21.52 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=37.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhHhhhc
Q 027617 35 KQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLES 107 (221)
Q Consensus 35 ~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~ 107 (221)
...++++-..-.++..+-..|..++. ..+..|...++.+....+.+...+..+.. .+|++||+.
T Consensus 19 ~~alr~ia~l~r~~~~i~~~~n~eI~----~ik~~~~~~~~~l~~~i~~l~~~l~~y~e-----~~r~elf~k 82 (171)
T 2p2u_A 19 EGALAEIATIDRKVGEIEAQMNEAID----AAKARASQKSAPLLARRKELEDGVATFAT-----LNKTEMFKD 82 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHhcCC
Confidence 33344333333333333334444443 33567888888888888888888877763 367888653
No 114
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=30.03 E-value=1e+02 Score=19.27 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=11.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHh
Q 027617 36 QKVSEIQTGLDEAESLIRKMDLEA 59 (221)
Q Consensus 36 ~~~~~i~~~l~~~~~~l~~me~e~ 59 (221)
..+...+..|.+.+..+..+..++
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 115
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=28.98 E-value=63 Score=18.66 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027617 201 GTVVAVLVIAIILILYF 217 (221)
Q Consensus 201 ~~ii~il~i~i~~vl~~ 217 (221)
++.+++.++++.+++..
T Consensus 25 aG~vVvv~i~~aLi~VS 41 (50)
T 3bz1_X 25 SGAVVLGLTFAVLIAIS 41 (50)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHheeee
Confidence 34443333444444433
No 116
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=28.62 E-value=65 Score=20.08 Aligned_cols=11 Identities=18% Similarity=0.627 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 027617 208 VIAIILILYFK 218 (221)
Q Consensus 208 ~i~i~~vl~~k 218 (221)
++.|++++.-|
T Consensus 29 i~GI~iilS~K 39 (72)
T 2jo1_A 29 ILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHcCc
Confidence 33333444433
No 117
>1svf_B Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=28.36 E-value=29 Score=18.89 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=7.3
Q ss_pred HhcchhchhhhHHHHHHHH
Q 027617 168 AHNTLHGVDDNVSKSKKVL 186 (221)
Q Consensus 168 ~~~~~~~i~~~l~~s~~~l 186 (221)
+...+.+....+..|+.++
T Consensus 17 ~n~sl~~A~~~l~~Sn~~L 35 (38)
T 1svf_B 17 VNKSLSDALQHLAQSDTYL 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444333
No 118
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=28.14 E-value=1.2e+02 Score=19.50 Aligned_cols=44 Identities=5% Similarity=-0.078 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHHHHHHHH
Q 027617 10 RQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIR 53 (221)
Q Consensus 10 ~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~ 53 (221)
..++..+..+...+-.++......+-..+..+-.-|..++....
T Consensus 19 ~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~ 62 (88)
T 1nkp_A 19 NELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQ 62 (88)
T ss_dssp HHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333211122333444444444444433333
No 119
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=27.51 E-value=1e+02 Score=18.41 Aligned_cols=24 Identities=8% Similarity=0.209 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 194 SRNKWIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 194 ~~dk~Il~~ii~il~i~i~~vl~~ 217 (221)
..|.++..+.++++++.++..+|.
T Consensus 26 ~sd~~Ly~~t~~l~~~g~~~~~y~ 49 (59)
T 1v54_J 26 ATDNILYRVTMTLCLGGTLYSLYC 49 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceeHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777666665
No 120
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.34 E-value=1.8e+02 Score=24.74 Aligned_cols=16 Identities=6% Similarity=0.023 Sum_probs=6.5
Q ss_pred HhhHHHHHHHHHHHHH
Q 027617 42 QTGLDEAESLIRKMDL 57 (221)
Q Consensus 42 ~~~l~~~~~~l~~me~ 57 (221)
...+++.++...+++.
T Consensus 413 ~~~~~~~~~~~~~~~~ 428 (487)
T 3oja_A 413 RAIVKRYEEMYVEQQS 428 (487)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 121
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=27.27 E-value=57 Score=21.77 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027617 76 EYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 76 ~~r~~l~~l~~~~~~~~ 92 (221)
.|...+..|+.++.+++
T Consensus 71 ~~~~klr~Yk~dL~~lk 87 (102)
T 1vcs_A 71 MYSNRMRSYKQEMGKLE 87 (102)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444555555554443
No 122
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=25.98 E-value=1.2e+02 Score=18.56 Aligned_cols=30 Identities=3% Similarity=0.353 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 027617 31 GERKKQKVSEIQTGLDEAESLIRKMDLEAR 60 (221)
Q Consensus 31 ~~~~~~~~~~i~~~l~~~~~~l~~me~e~~ 60 (221)
|.+|...+..|+..+.++..++..|...+.
T Consensus 1 ~~eR~~ei~~ie~~i~eL~~iF~dla~lV~ 30 (71)
T 2nps_B 1 GSMRETAIQQLEADILDVNQIFKDLAMMIH 30 (71)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888999999999999888887765
No 123
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.68 E-value=1.7e+02 Score=20.27 Aligned_cols=53 Identities=11% Similarity=0.220 Sum_probs=21.6
Q ss_pred HHHhhHHHHHHHHHHHHHHhhcCChh----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 40 EIQTGLDEAESLIRKMDLEARSLQPN----------VKAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 40 ~i~~~l~~~~~~l~~me~e~~~~~~~----------~r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
.....+.++...+..++.|+.++... ....|...+..++..+..+..++.+++
T Consensus 35 ~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r 97 (131)
T 3tnu_A 35 SGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLR 97 (131)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555554433110 012344445555555555555555443
No 124
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=25.65 E-value=1.9e+02 Score=21.50 Aligned_cols=17 Identities=6% Similarity=0.049 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027617 5 FERYERQYCEISANLSK 21 (221)
Q Consensus 5 f~~ye~e~~~~~~~i~~ 21 (221)
|+....-|..+++++..
T Consensus 26 ~e~v~~~~~~y~~~l~~ 42 (191)
T 1nfn_A 26 WELALGRFWDYLRWVQT 42 (191)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 125
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=25.60 E-value=1.1e+02 Score=19.61 Aligned_cols=24 Identities=8% Similarity=0.209 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 194 SRNKWIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 194 ~~dk~Il~~ii~il~i~i~~vl~~ 217 (221)
..|.++..+.+++++++++..+|.
T Consensus 47 rsd~~Ly~~t~~l~~~G~~~~ly~ 70 (80)
T 2y69_J 47 ATDNILYRVTMTLCLGGTLYSLYC 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777766665
No 126
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=25.38 E-value=1.8e+02 Score=20.35 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=32.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhcCCh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 38 VSEIQTGLDEAESLIRKMDLEARSLQP-------NVKAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 38 ~~~i~~~l~~~~~~l~~me~e~~~~~~-------~~r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
-.+++..++.++.++..........++ ..+..+..-+.....++.+|.+.+.-..
T Consensus 33 k~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE 94 (130)
T 4dnd_A 33 RGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVE 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347778888888888776544332221 1244566666777777777776665543
No 127
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=25.15 E-value=2e+02 Score=21.78 Aligned_cols=48 Identities=17% Similarity=0.238 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 027617 46 DEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 94 (221)
Q Consensus 46 ~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~~ 94 (221)
.+-.+.+++++.+..+.-+. -+.+.......+.++.+++..++++...
T Consensus 26 ~~~~~~~~~~~a~~~s~~s~-~~dl~~s~~~l~ae~~~L~~~l~kLeGn 73 (206)
T 3oa7_A 26 SERTEALQQLRVNYGSFVSE-YNDLTKSHNTLSKELDNLRSRFGNLEGN 73 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHccCC
Confidence 34445566677766654332 3567777888999999999999998754
No 128
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=25.13 E-value=1.7e+02 Score=20.18 Aligned_cols=87 Identities=11% Similarity=0.220 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHH
Q 027617 5 FERYERQYCEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNL 84 (221)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l 84 (221)
|+..+.+|..+...=+..+..-... .+.....+.+-...-.++..-+..+...... .-.+..|...+++|...++.|
T Consensus 11 l~~Leae~q~L~~~E~qry~~eka~-AE~A~~~La~~~~l~~~i~er~~~i~~~~~~--~~yk~~y~~l~k~Y~~~~keL 87 (119)
T 3etw_A 11 LQALDAEYQNLANQEEARFNEERAQ-ADAARQALAQNEQVYNELSQRAQRLQAEANT--RFYKSQYQELASKYEDALKKL 87 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--CTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554433333332110 1122223333333334444444444433321 122568999999999999999
Q ss_pred HHHHHHHHcc
Q 027617 85 KSEVKRLVSG 94 (221)
Q Consensus 85 ~~~~~~~~~~ 94 (221)
..+++.-...
T Consensus 88 d~~ik~qeki 97 (119)
T 3etw_A 88 EAEMEQQKAV 97 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888776543
No 129
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=24.99 E-value=1.5e+02 Score=19.30 Aligned_cols=19 Identities=26% Similarity=0.162 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhhcCCh
Q 027617 46 DEAESLIRKMDLEARSLQP 64 (221)
Q Consensus 46 ~~~~~~l~~me~e~~~~~~ 64 (221)
..+.+.+.+.=+.+.++++
T Consensus 40 ~~L~E~L~k~LLkLD~Ie~ 58 (87)
T 1m62_A 40 WLLEEMLTKELLELDSVET 58 (87)
T ss_dssp HHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHCCcCc
Confidence 3334444444455555543
No 130
>1q90_L Cytochrome B6F complex subunit PETL; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.24.1
Probab=24.31 E-value=85 Score=16.35 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027617 198 WIIGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~k~ 219 (221)
++-|+++++..+++..++|..+
T Consensus 4 iisYf~fL~~al~~t~~lfiGL 25 (32)
T 1q90_L 4 ITSYVGLLIGALVFTLGIYLGL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666544
No 131
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=24.08 E-value=1.3e+02 Score=20.07 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhhcCCh
Q 027617 46 DEAESLIRKMDLEARSLQP 64 (221)
Q Consensus 46 ~~~~~~l~~me~e~~~~~~ 64 (221)
..+.+.+.+.=+.+.++++
T Consensus 47 ~~L~E~L~k~LLkLD~Iet 65 (99)
T 1ugo_A 47 KRLERILTKQLFEIDSVDT 65 (99)
T ss_dssp HHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHcCcCc
Confidence 3334444444444445443
No 132
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=24.08 E-value=1.7e+02 Score=19.71 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=17.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhh
Q 027617 36 QKVSEIQTGLDEAESLIRKMDLEAR 60 (221)
Q Consensus 36 ~~~~~i~~~l~~~~~~l~~me~e~~ 60 (221)
....++......++..|+.|+....
T Consensus 54 ~l~~~i~~~a~~ik~~Lk~l~~~~~ 78 (127)
T 1ez3_A 54 ELMSDIKKTANKVRSKLKSIEQSIE 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777776654
No 133
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=23.56 E-value=1.7e+02 Score=19.62 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=24.5
Q ss_pred HHhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhHhhhc
Q 027617 41 IQTGLDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLES 107 (221)
Q Consensus 41 i~~~l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~~~~~~~~r~~Ll~~ 107 (221)
+...|.+.++.+.++..|.+.- ...+...+..+..++.++..++... .+|++|+..
T Consensus 35 LKD~LEe~eE~~aql~Re~~eK--------~re~e~~Kr~~~~L~~~~~~lk~~L---~qRD~LI~E 90 (103)
T 4h22_A 35 LKDMLLELEEQLAESRRQYEEK--------NKEFEREKHAHSILQFQFAEVKEAL---KQREEMLEP 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH---HTTTSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3344555555555544444321 1113334444444555554444332 467777653
No 134
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=23.45 E-value=1.3e+02 Score=19.11 Aligned_cols=54 Identities=11% Similarity=0.109 Sum_probs=26.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHhhcCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 39 SEIQTGLDEAESLIRKMDLEARSLQ----PNVKAVLLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 39 ~~i~~~l~~~~~~l~~me~e~~~~~----~~~r~~~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
.++.....+++..+..|+..+..+. ......|.....+......++...+..+.
T Consensus 16 ~~i~~~~~~i~~~l~~l~~~v~~L~~~W~G~A~~ay~~~~~~W~~~~~~l~~~L~~i~ 73 (96)
T 3h6p_C 16 GDMAGYAGTLQSLGADIASEQAVLSSAWQGDTGITYQGWQTQWNQALEDLVRAYQSMS 73 (96)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHTGGGCCTTSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555554432 22234566666666666666666665554
No 135
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.03 E-value=1.9e+02 Score=19.92 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027617 70 LLAKLREYKSDLNNLKSEVKRLV 92 (221)
Q Consensus 70 ~~~k~~~~r~~l~~l~~~~~~~~ 92 (221)
|...+..++..+..+..++.+++
T Consensus 73 ~~~~l~~~q~~i~~lE~eL~~~r 95 (129)
T 3tnu_B 73 GELALKDARNKLAELEEALQKAK 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 44444555555555555554443
No 136
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=23.01 E-value=3.8e+02 Score=23.34 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027617 68 AVLLAKLREYKSDLNNLKSE 87 (221)
Q Consensus 68 ~~~~~k~~~~r~~l~~l~~~ 87 (221)
+.|..++.+|..++..++++
T Consensus 62 a~Ye~~l~kY~~dlakY~~~ 81 (497)
T 3iox_A 62 ADYEAKLAKYQADLAKYQKD 81 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 137
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=22.95 E-value=1.7e+02 Score=19.45 Aligned_cols=20 Identities=25% Similarity=0.154 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHhhcCCh
Q 027617 45 LDEAESLIRKMDLEARSLQP 64 (221)
Q Consensus 45 l~~~~~~l~~me~e~~~~~~ 64 (221)
...+.+.+.+.=+.+-++++
T Consensus 52 y~~L~E~L~k~LLkLD~Iet 71 (99)
T 1m7k_A 52 YWLLEEMLTKELLELDSVET 71 (99)
T ss_dssp HHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHCCcCc
Confidence 33344445554455555543
No 138
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.62 E-value=1.4e+02 Score=18.42 Aligned_cols=13 Identities=15% Similarity=0.480 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 027617 76 EYKSDLNNLKSEV 88 (221)
Q Consensus 76 ~~r~~l~~l~~~~ 88 (221)
.++..+..|..++
T Consensus 54 ~Lr~~i~~L~~El 66 (70)
T 1gd2_E 54 QLRQKVRQLEEEL 66 (70)
T ss_dssp HHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444333
No 139
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=22.45 E-value=97 Score=16.36 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027617 198 WIIGTVVAVLVIAIILILYF 217 (221)
Q Consensus 198 ~Il~~ii~il~i~i~~vl~~ 217 (221)
+...+++.+++++..+.+|.
T Consensus 9 l~~V~ilg~~I~i~W~~vf~ 28 (34)
T 3s8f_C 9 LAVILVLTLTILVFWLGVYA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHHHHe
Confidence 33344444444444444443
No 140
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=22.29 E-value=2.1e+02 Score=20.16 Aligned_cols=55 Identities=7% Similarity=0.012 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhHhhccChHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCChhHH
Q 027617 13 CEISANLSKKCTAAASLDGERKKQKVSEIQTGLDEAESLIRKMDLEARSLQPNVK 67 (221)
Q Consensus 13 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~me~e~~~~~~~~r 67 (221)
..+.++....|..+...++..-..+-.-+..-.+.++.+++-.+..+...||+.+
T Consensus 6 ~~~~~~f~~~L~~L~~nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~K 60 (144)
T 1sz9_A 6 EVIVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQK 60 (144)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhH
Confidence 3344444444444432223233333334445677888888888988988888765
No 141
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=21.69 E-value=3.3e+02 Score=25.43 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhhc------CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 34 KKQKVSEIQTGLDEAESLIRKMDLEARS------LQPNVKAVLLAKLREYKSDLNNLKSEVKR 90 (221)
Q Consensus 34 ~~~~~~~i~~~l~~~~~~l~~me~e~~~------~~~~~r~~~~~k~~~~r~~l~~l~~~~~~ 90 (221)
..+...++...+..++.-+..++..+.+ .|+.....-+.|+..++.+++.++..+..
T Consensus 798 ~~~~~~rl~k~~~~~~~~~~~~~~~l~~~~f~~~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (862)
T 1gax_A 798 VEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQ 860 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566777777777777777666544 57777778888889998888888877754
No 142
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=21.38 E-value=56 Score=21.33 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027617 197 KWIIGTVVAVLVIAIILILYFKL 219 (221)
Q Consensus 197 k~Il~~ii~il~i~i~~vl~~k~ 219 (221)
+.++.+.+++..+++++-+|-||
T Consensus 62 ~~VLv~sl~FIa~VilLHI~gK~ 84 (87)
T 2ww9_C 62 LVVLFLSVGFIFSVIALHLLTKF 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred eeehhhHHHHHHHHHHHHHhhhh
Confidence 34455444555555555566555
No 143
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=21.24 E-value=1.6e+02 Score=18.47 Aligned_cols=57 Identities=7% Similarity=0.029 Sum_probs=35.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhcCChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 027617 38 VSEIQTGLDEAESLIRKMDLEARSLQPN----VKAVLLAKLREYKSDLNNLKSEVKRLVSG 94 (221)
Q Consensus 38 ~~~i~~~l~~~~~~l~~me~e~~~~~~~----~r~~~~~k~~~~r~~l~~l~~~~~~~~~~ 94 (221)
...++..+..+...+..|...+...... .-..|...+.++..-|..+...++.....
T Consensus 25 ~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~ 85 (99)
T 3zbh_A 25 SSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATI 85 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777776666654431 23456677777777777777777665543
No 144
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=21.09 E-value=1e+02 Score=24.23 Aligned_cols=24 Identities=13% Similarity=0.229 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 193 MSRNKWIIGTVVAVLVIAIILILY 216 (221)
Q Consensus 193 ~~~dk~Il~~ii~il~i~i~~vl~ 216 (221)
+.-||+++|+.+++++++.+.+++
T Consensus 217 mVlDRlfL~iF~i~~i~gT~~I~l 240 (250)
T 1oed_B 217 MVADRLFLYVFFVICSIGTFSIFL 240 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899998887777777665554
No 145
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=20.96 E-value=2.8e+02 Score=21.77 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 027617 47 EAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 94 (221)
Q Consensus 47 ~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~~ 94 (221)
.+......+...+..+.|..+..|....+.|..++..+..+++..-..
T Consensus 124 ~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~ 171 (284)
T 2prs_A 124 IARATAVAIHGKLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAP 171 (284)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444455678888899999999999999999998876543
No 146
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=20.81 E-value=2.8e+02 Score=21.92 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 027617 45 LDEAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 94 (221)
Q Consensus 45 l~~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~~ 94 (221)
...+......+...+..+.|..+..|....+.|..++..+..+++..-..
T Consensus 138 p~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~ 187 (291)
T 1pq4_A 138 PTLVKRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELGQILQP 187 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444445555555555678888899999999999999999999876543
No 147
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=20.69 E-value=2.7e+02 Score=22.26 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 027617 47 EAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 94 (221)
Q Consensus 47 ~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~~ 94 (221)
.+....+.+...+..+.|..+..|....+.|..++..+..+++..-..
T Consensus 140 n~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~Ld~~~~~~l~~ 187 (312)
T 2o1e_A 140 LAQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDKLYRTTAKK 187 (312)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444444555678888899999999999999999998876543
No 148
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=20.56 E-value=2.8e+02 Score=21.76 Aligned_cols=47 Identities=6% Similarity=0.054 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 027617 48 AESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 94 (221)
Q Consensus 48 ~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~~ 94 (221)
+....+.+...+..+.|..+..|....+.|..++..+..+++..-..
T Consensus 128 ~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~ 174 (284)
T 3cx3_A 128 AGEEAQIIADKLSEVDSEHKETYQKNAQAFIKKAQELTKKFQPKFEK 174 (284)
T ss_dssp HHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444444445578888899999999999999999998776543
No 149
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=20.52 E-value=1.7e+02 Score=18.48 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHh
Q 027617 5 FERYERQYCEISANLSKKCTAA 26 (221)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~ 26 (221)
|...-.++...+..|...+..+
T Consensus 20 ~~~~~~~i~~~l~~L~~~~~~l 41 (98)
T 3gwk_C 20 YTAGSQQVTEVLNLLTQEQAVI 41 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 150
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=20.46 E-value=3.2e+02 Score=21.64 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=14.3
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 027617 2 SDVFERYERQYCEISANLSK 21 (221)
Q Consensus 2 s~~f~~ye~e~~~~~~~i~~ 21 (221)
|..|...+.+|...+.+|-.
T Consensus 31 s~~~~~~~~q~~~~l~~~~~ 50 (267)
T 3htk_C 31 SNIYQQCYKQIDETINQLVD 50 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45777788888777777744
No 151
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=20.45 E-value=2.9e+02 Score=21.79 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 027617 47 EAESLIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 94 (221)
Q Consensus 47 ~~~~~l~~me~e~~~~~~~~r~~~~~k~~~~r~~l~~l~~~~~~~~~~ 94 (221)
.+....+.+...+..+.|..+..|....+.|..++..+..+++..-..
T Consensus 129 ~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~ 176 (286)
T 3gi1_A 129 LAGEEAVNIAKELGRLDPKHKDSYTKNAKAFKKEAEQLTEEYTQKFKK 176 (286)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344444444445678888899999999999999999999876543
No 152
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=20.35 E-value=1.9e+02 Score=18.86 Aligned_cols=26 Identities=15% Similarity=0.410 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027617 66 VKAVLLAKLREYKSDLNNLKSEVKRL 91 (221)
Q Consensus 66 ~r~~~~~k~~~~r~~l~~l~~~~~~~ 91 (221)
....|...+...|..+..+..+-.++
T Consensus 50 ~~~~ye~~i~~Lr~~i~~~~~ek~~l 75 (93)
T 3s4r_A 50 LGDLYEEEMRELRRQVDQLTNDKARV 75 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554443333
No 153
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=20.10 E-value=1.9e+02 Score=18.87 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhHhhcc------C-hHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 027617 12 YCEISANLSKKCTAAASL------D-GERKKQKVSEIQTGLDEAESLIRKMDLEAR 60 (221)
Q Consensus 12 ~~~~~~~i~~~l~~~~~~------~-~~~~~~~~~~i~~~l~~~~~~l~~me~e~~ 60 (221)
+..++.-|..+++.+... . ....+..+.++-..+--+.++++.||.|+.
T Consensus 6 LEdlc~hineKIs~ikk~L~Lr~~gqdP~lk~~L~Kig~Ei~~l~eLLn~~E~eV~ 61 (91)
T 4aj5_A 6 LEQLCSHVNEKIGNIKKTLSLRNCGQEPTLKTVLNKIGDEIIVINELLNKLELEIQ 61 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666655321 1 123556788888888899999999998886
No 154
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=20.01 E-value=1.1e+02 Score=23.29 Aligned_cols=33 Identities=9% Similarity=0.305 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhc
Q 027617 187 TAMSRRMSRNKWII--GTVVAVLVIAIILILYFKLA 220 (221)
Q Consensus 187 ~~i~rr~~~dk~Il--~~ii~il~i~i~~vl~~k~~ 220 (221)
.+|.+.+-.. |++ .++++++++-+.++.|.||+
T Consensus 106 ~r~~~yIE~A-W~fST~lGi~LFL~evall~WVKF~ 140 (214)
T 4hkr_A 106 ERLHWYIETA-WAFSTLLGLILFLLEIAILCWVKFY 140 (214)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhheEEee
Confidence 3454443333 444 34556677778888999986
Done!