BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027618
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVI 74
P N + +VLVG+TG GKSATGNSILGR+ F S ++ +T CE + + K+ ++V V+
Sbjct: 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 83
Query: 75 DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGK 134
DTPG+FD + KEI++CI + G HA+L +EE A + FG+
Sbjct: 84 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALL-LVVPLGRYTEEEHKATEKILKXFGE 142
Query: 135 KIFDYMIVVF 144
+ + I++F
Sbjct: 143 RARSFXILIF 152
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID 75
S E ++LVG+TG GKSA GNSIL ++AF+S+ S +T TC + + ++V +ID
Sbjct: 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 77
Query: 76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKK 135
TP +F + E + KE+ +C ++ G H +L Q+++AA ++ +FG+
Sbjct: 78 TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGED 136
Query: 136 IFDYMIVVF 144
+ IV+F
Sbjct: 137 AMGHTIVLF 145
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID 75
S E ++LVG+TG GKSA GNSIL ++AF+S+ S +T TC + + ++V +ID
Sbjct: 2 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 60
Query: 76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKK 135
TP +F + E + KE+ +C ++ G H +L Q+++AA ++ +FG+
Sbjct: 61 TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGED 119
Query: 136 IFDYMIVVF 144
+ IV+F
Sbjct: 120 AMGHTIVLF 128
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Query: 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPG 78
E ++LVG+TG GKSA GNSIL ++AF+S+ S +T TC + + ++V +IDTP
Sbjct: 2 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPD 60
Query: 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFD 138
+F + E + KE+ +C ++ G H +L Q+++AA ++ +FG+
Sbjct: 61 MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGEDAMG 119
Query: 139 YMIVVF 144
+ IV+F
Sbjct: 120 HTIVLF 125
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID 75
S E ++LVG+TG GKSA GNSIL ++AF+S+ S +T TC + + ++V +ID
Sbjct: 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 77
Query: 76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKK 135
TP F + E + KE+ +C ++ G H +L Q+++AA ++ +FG+
Sbjct: 78 TPDXFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGED 136
Query: 136 IFDYMIVVF 144
+ IV+F
Sbjct: 137 AXGHTIVLF 145
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79
R ++LVGRTG GKSATGNSILG+R F SR ++ VT C + D V V+DTP +
Sbjct: 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTG-SRRWDKCHVEVVDTPDI 80
Query: 80 FDFSAGSEFVG-KEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFD 138
F G +E C ++ G HA+L Q+++ A+ ++ +FG+ +
Sbjct: 81 FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQ-AVRQVRDMFGEDVLK 139
Query: 139 YMIVVF 144
+M++VF
Sbjct: 140 WMVIVF 145
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
TV+++G+ G GKS+T NS++G + + + + RT+ G +N+IDTPGL
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81 DFSAGSEFVGKEIVKCIG--MAKDGIHAVLXXXXXXXXXXQE-EEAALHSLQTLFGKKIF 137
+ AG +V + ++ I + I +L E ++ + ++ FGK+I+
Sbjct: 96 E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK--KGATKLRDQQFE 182
++V + + + LK + +K+R Q+FE
Sbjct: 152 CKTLLVLTHAQFSPPDELSYETFSSKRSDELLKTIRAGSKMRKQEFE 198
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
TV+++G+ G GKS+T NS++G + + + + RT+ G +N+IDTPGL
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81 DFSAGSEFVGKEIVKCIG--MAKDGIHAVLXXXXXXXXXXQE-EEAALHSLQTLFGKKIF 137
+ AG +V + ++ I + I +L E ++ + ++ FGK+I+
Sbjct: 96 E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK--KGATKLRDQQFE 182
++V + + LK + +K+R Q+FE
Sbjct: 152 CKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFE 198
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
TV+++G+ G GKS+T NS++G + + + + RT+ G +N+IDTPGL
Sbjct: 37 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 94
Query: 81 DFSAGSEFVGKEIVKCIG--MAKDGIHAVLXXXXXXXXXXQE-EEAALHSLQTLFGKKIF 137
+ AG +V + ++ I + I +L E ++ + ++ FGK+I+
Sbjct: 95 E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 150
Query: 138 DYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK--KGATKLRDQQFE 182
++V + + LK + +K+R Q+FE
Sbjct: 151 CKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFE 197
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
TV+++G+ G GKS+T NS++G + + + + RT+ G +N+IDTPGL
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81 DFSAGSEFVGKEIVKCIG--MAKDGIHAVLXXXXXXXXXXQE-EEAALHSLQTLFGKKIF 137
+ AG +V + ++ I + I +L E ++ + ++ FGK+I+
Sbjct: 96 E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK--KGATKLRDQQFE 182
++V + + LK + +K+R Q+FE
Sbjct: 152 CKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFE 198
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGL 79
V +VG+ GKS N++LG K S +T + R +L +G Q+V +DTPGL
Sbjct: 10 VAIVGKPNVGKSTLLNNLLG---VKVAPISPRPQTTRKRLRGILTEGRRQIV-FVDTPGL 65
Query: 80 F-DFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGK 134
A EF+ +E+ + + ++AV+ E+E +L+ L GK
Sbjct: 66 HKPMDALGEFMDQEVYEALA----DVNAVVWVVDLRHPPTPEDELVARALKPLVGK 117
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
T++++G+ G GKS+T NSI+G R S + R+ + G +N+IDTPGL
Sbjct: 41 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRS--RAGFTLNIIDTPGLI 98
Query: 81 D 81
+
Sbjct: 99 E 99
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
T+++ G+ G GKS+T NSI+G R S + R+ + G +N+IDTPGL
Sbjct: 41 TILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRS--RAGFTLNIIDTPGLI 98
Query: 81 D 81
+
Sbjct: 99 E 99
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 12/76 (15%)
Query: 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----DGQVVNVIDT 76
VV+ GR GKS+ N++ GR A + VT R VL+ DG +++IDT
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREA-------AIVTDIAGTTRDVLREHIHIDGMPLHIIDT 62
Query: 77 PGLFDFSAGSEFVGKE 92
GL + S E +G E
Sbjct: 63 AGLREASDEVERIGIE 78
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 12/76 (15%)
Query: 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----DGQVVNVIDT 76
VV+ GR GKS+ N++ GR A + VT R VL+ DG +++IDT
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREA-------AIVTDIAGTTRDVLREHIHIDGMPLHIIDT 59
Query: 77 PGLFDFSAGSEFVGKE 92
GL + S E +G E
Sbjct: 60 AGLREASDEVERIGIE 75
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
Length = 172
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 12/76 (15%)
Query: 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----DGQVVNVIDT 76
VV+ GR GKS+ N++ GR A + VT R VL+ DG +++IDT
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREA-------AIVTDIAGTTRDVLREHIHIDGXPLHIIDT 59
Query: 77 PGLFDFSAGSEFVGKE 92
GL + S E +G E
Sbjct: 60 AGLREASDEVERIGIE 75
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 32.7 bits (73), Expect = 0.15, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 15/78 (19%)
Query: 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR-------ASSSGVTSTCEMQRTVLKD----- 67
RTV LVG G+GK+ ++L + K R +++ T ++ RT ++
Sbjct: 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL 69
Query: 68 ---GQVVNVIDTPGLFDF 82
G V ++D PG DF
Sbjct: 70 LFRGHRVFLLDAPGYGDF 87
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVI 74
P G + L GR+ GKS+ NS++ R+ +S G T T ++ D ++ +
Sbjct: 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--IINDE--LHFV 74
Query: 75 DTPG 78
D PG
Sbjct: 75 DVPG 78
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 17/80 (21%)
Query: 20 RTVVLVGRTGNGKSATGNSIL---GR-------------RAFKSRASSSGVTSTCEMQRT 63
R +V+ GK+ T IL GR F + G+T T +
Sbjct: 13 RNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC 72
Query: 64 VLKDGQVVNVIDTPGLFDFS 83
KD ++ N+IDTPG DF+
Sbjct: 73 FWKDHRI-NIIDTPGHVDFT 91
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 1 MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
+ SAI D L + V + G TG+GKS+ N++ G + A+ +GV M
Sbjct: 53 LTNSAISD--ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-M 109
Query: 61 QRTVLKDGQVVNVI--DTPGL 79
+R K + NV+ D PG+
Sbjct: 110 ERHPYKHPNIPNVVFWDLPGI 130
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 1 MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
+ SAI D L + V + G TG+GKS+ N++ G + A+ +GV M
Sbjct: 53 LTNSAISD--ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-M 109
Query: 61 QRTVLKDGQVVNVI--DTPGL 79
+R K + NV+ D PG+
Sbjct: 110 ERHPYKHPNIPNVVFWDLPGI 130
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 1 MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
+ SAI D L + V + G TG+GKS+ N++ G + A+ +GV M
Sbjct: 53 LTNSAISD--ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-M 109
Query: 61 QRTVLKDGQVVNVI--DTPGL 79
+R K + NV+ D PG+
Sbjct: 110 ERHPYKHPNIPNVVFWDLPGI 130
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 1 MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
+ SAI D L + V + G TG+GKS+ N++ G + A+ +GV M
Sbjct: 53 LTNSAISD--ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-M 109
Query: 61 QRTVLKDGQVVNVI--DTPGL 79
+R K + NV+ D PG+
Sbjct: 110 ERHPYKHPNIPNVVFWDLPGI 130
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
V++VG GKS N + G+RA S + G+T +Q L++G V ++DTPG+
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRA-SSVGAQPGITKG--IQWFSLENG--VKILDTPGIL 155
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 10 WELTSPSNG-ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV-LKD 67
+ + P G R +V+ GR GKS+ N+++G+ S S T+T + +++ L
Sbjct: 24 YTMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNV--SIVSDYAGTTTDPVYKSMELHP 81
Query: 68 GQVVNVIDTPGLFD 81
V ++DTPGL D
Sbjct: 82 IGPVTLVDTPGLDD 95
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 19 ERTVVLVGRTGNGKSATGNSI----LGRRAFKSRASSSGVTSTCEMQRTVLKDGQV---V 71
E T+++VG +G GKS NS+ L + + T E + ++K+G V +
Sbjct: 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 67
Query: 72 NVIDTPGLFD 81
++DTPG D
Sbjct: 68 TIVDTPGFGD 77
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 45 FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83
F + G+T T + KD ++ N+IDTPG DF+
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRI-NIIDTPGHVDFT 91
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With
Ef-G, Gdp And Fusidic Acid
Length = 691
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 45 FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83
F + G+T T + KD ++ N+IDTPG DF+
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRI-NIIDTPGHVDFT 91
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With
The Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of
4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of
4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And
Mld-Loading (30s Subunit)
Length = 691
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 45 FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83
F + G+T T + KD ++ N+IDTPG DF+
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRI-NIIDTPGHVDFT 91
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 45 FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83
F + G+T T + KD ++ N+IDTPG DF+
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRI-NIIDTPGHVDFT 91
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 19 ERTVVLVGRTGNGKSATGNSI----LGRRAFKSRASSSGVTSTCEMQRTVLKDGQV---V 71
E T+++VG +G GKS NS+ L + + T E + ++K+G V +
Sbjct: 3 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 62
Query: 72 NVIDTPGLFD 81
++DTPG D
Sbjct: 63 TIVDTPGFGD 72
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80
TV++VGR GKS N ++ ++ K+ + +Q TV G+ ++DT G+F
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKK--KAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVF 60
Query: 81 D 81
D
Sbjct: 61 D 61
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE--MQRTVLKDGQVVNVIDTPGL 79
V +VGR GKS N+IL K RA S + T + V DG+ +DT GL
Sbjct: 183 VAIVGRPNVGKSTLFNAILN----KERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL 238
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In
Complex With Dna
Length = 387
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGV 54
PSN +L G TG GK+A +L R ++RASS GV
Sbjct: 44 PSNA----LLYGLTGTGKTAVARLVL--RRLEARASSLGV 77
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 25/91 (27%)
Query: 25 VGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84
+G G + T N++L R+ + +G+TS + VN+IDTPG DF A
Sbjct: 32 LGSVDKGTTRTDNTLLERQ--RGITIQTGITS-------FQWENTKVNIIDTPGHMDFLA 82
Query: 85 GSEFVGKEIVKCIGM---------AKDGIHA 106
E+ + + + AKDG+ A
Sbjct: 83 -------EVYRSLSVLDGAILLISAKDGVQA 106
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 19 ERTVVLVGRTGNGKSATGNSI----LGRRAFKSRASSSGVTSTCEMQRTVLKDGQV---V 71
E T+++VG +G GKS NS+ L + + T E + ++K+G V +
Sbjct: 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 90
Query: 72 NVIDTPGLFD 81
++DTPG D
Sbjct: 91 TIVDTPGFGD 100
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 12/71 (16%)
Query: 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-----VTSTCEMQRT--VLKDGQV--- 70
+++VG++G GKS N++ + SR +SS + T E++ V+++G V
Sbjct: 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMK 61
Query: 71 VNVIDTPGLFD 81
+ VIDTPG D
Sbjct: 62 LTVIDTPGFGD 72
>pdb|2WUJ|A Chain A, Diviva N-Terminal Domain
pdb|2WUJ|B Chain B, Diviva N-Terminal Domain
Length = 57
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 185 SLKGYSKREISELKEQMHKSYEDQLKRITEM 215
S +GY + E++E Q+ K YE L++ TE+
Sbjct: 16 SFRGYDEDEVNEFLAQVRKDYEIVLRKKTEL 46
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTP 77
G +T+VL+G +G G+S N++L + K V T R +DG+ + I T
Sbjct: 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYP---VPYTTRPPRKSEEDGKEYHFISTE 74
Query: 78 GLFDFSAGSEFV 89
+ + +EF+
Sbjct: 75 EMTRNISANEFL 86
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLKDGQVVNVIDTPGL 79
V +VG+ GKS N++LG + S S T+ + + + + Q++ +DTPG+
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKV--SIISPKAGTTRMRVLGVKNIPNEAQII-FLDTPGI 68
Query: 80 FDFSAGSEFVGKEIVKC 96
++ S+ +G +V+
Sbjct: 69 YE-PKKSDVLGHSMVEI 84
>pdb|2WUK|A Chain A, Diviva N-Terminal Domain, F17a Mutant
pdb|2WUK|B Chain B, Diviva N-Terminal Domain, F17a Mutant
pdb|2WUK|C Chain C, Diviva N-Terminal Domain, F17a Mutant
pdb|2WUK|D Chain D, Diviva N-Terminal Domain, F17a Mutant
Length = 57
Score = 28.1 bits (61), Expect = 4.0, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 185 SLKGYSKREISELKEQMHKSYEDQLKRITEM 215
S +GY + E++E Q+ K YE L++ TE+
Sbjct: 16 SARGYDEDEVNEFLAQVRKDYEIVLRKKTEL 46
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS-------SGVTSTCEMQRTV 64
++ P G+ T+ G S+ R+A + S G++ T + +
Sbjct: 37 ISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFP 96
Query: 65 LKDGQVVNVIDTPGLFDFS 83
+D +VVN++DTPG DFS
Sbjct: 97 YRD-RVVNLLDTPGHQDFS 114
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The
3' End Of 16s Rrna
Length = 308
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLKDGQVVNVIDTPGL 79
V +VG+ GKS N++LG + S S T+ + + + + Q++ +DTPG+
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKV--SIISPKAGTTRMRVLGVKNIPNEAQII-FLDTPGI 69
Query: 80 FDFSAGSEFVGKEIVKC 96
++ S+ +G +V+
Sbjct: 70 YE-PKKSDVLGHSMVEI 85
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVV-----N 72
G + V +VG T GKS + + R + + V +T T L + +
Sbjct: 159 GGKDVYVVGCTNVGKS----TFINRXIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 214
Query: 73 VIDTPGLFDFSAGSEFVGKEIVKCIGMAKD 102
+ DTPG+ + + +VGK+ +K I K+
Sbjct: 215 LYDTPGIINHHQXAHYVGKQSLKLITPTKE 244
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 27.3 bits (59), Expect = 5.9, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 17 NGERTVVLVGRTGNGKSATGNSI---LGRRAF 45
+GER V L+G TG GK+ T + LGR A
Sbjct: 27 DGERFVTLLGATGTGKTVTMAKVIEALGRPAL 58
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 27.3 bits (59), Expect = 5.9, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 17 NGERTVVLVGRTGNGKSATGNSI---LGRRAF 45
+GER V L+G TG GK+ T + LGR A
Sbjct: 26 DGERFVTLLGATGTGKTVTMAKVIEALGRPAL 57
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 67 DGQVVNVIDTPGLFDFS 83
+G VN+IDTPG DF+
Sbjct: 73 EGHRVNIIDTPGHVDFT 89
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 67 DGQVVNVIDTPGLFDFS 83
+G VN+IDTPG DF+
Sbjct: 73 EGHRVNIIDTPGHVDFT 89
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 20 RTVVLVGRTGNGKSATGN 37
+TV LVGR+G+GKS N
Sbjct: 370 KTVALVGRSGSGKSTIAN 387
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLF 80
+ L+G GKS N++ G + + GVT E + + +G+ V+D PG++
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVY--IGNWPGVT--VEKKEGEFEYNGEKFKVVDLPGVY 65
Query: 81 DFSAGS 86
+A S
Sbjct: 66 SLTANS 71
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVI 74
VVL+G G GKS N G S S V +RT++ DG+ +I
Sbjct: 9 VVLIGEQGVGKSTLANIFAG--VHDSMDSDXEVLGEDTYERTLMVDGESATII 59
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVI 74
VVL+G G GKS N G S S V +RT++ DG+ +I
Sbjct: 9 VVLIGEQGVGKSTLANIFAG--VHDSMDSDXEVLGEDTYERTLMVDGESATII 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,618,374
Number of Sequences: 62578
Number of extensions: 192293
Number of successful extensions: 591
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 556
Number of HSP's gapped (non-prelim): 66
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)