Query 027618
Match_columns 221
No_of_seqs 199 out of 2291
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 12:39:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04548 AIG1: AIG1 family; I 100.0 3.1E-31 6.7E-36 202.2 16.8 179 20-202 1-206 (212)
2 cd01852 AIG1 AIG1 (avrRpt2-ind 100.0 4E-28 8.7E-33 183.3 18.1 140 20-163 1-140 (196)
3 TIGR00991 3a0901s02IAP34 GTP-b 99.9 6.5E-23 1.4E-27 161.3 16.1 156 13-173 32-188 (313)
4 TIGR00993 3a0901s04IAP86 chlor 99.9 6.3E-21 1.4E-25 161.4 18.6 153 18-174 117-277 (763)
5 cd01853 Toc34_like Toc34-like 99.9 1.7E-20 3.7E-25 145.6 16.1 136 16-154 28-166 (249)
6 COG1160 Predicted GTPases [Gen 99.9 2.7E-20 5.8E-25 151.3 15.8 156 20-185 4-159 (444)
7 COG1159 Era GTPase [General fu 99.8 6.9E-20 1.5E-24 141.5 15.4 124 20-153 7-130 (298)
8 PF01926 MMR_HSR1: 50S ribosom 99.8 2E-18 4.3E-23 119.5 14.7 116 21-146 1-116 (116)
9 COG0218 Predicted GTPase [Gene 99.8 1.8E-17 4E-22 121.7 15.7 125 17-151 22-149 (200)
10 PF02421 FeoB_N: Ferrous iron 99.8 5.6E-18 1.2E-22 121.7 12.7 120 20-152 1-120 (156)
11 TIGR00436 era GTP-binding prot 99.8 1.7E-17 3.6E-22 131.2 15.9 120 21-151 2-121 (270)
12 PRK15494 era GTPase Era; Provi 99.8 2.2E-17 4.9E-22 134.2 16.5 156 20-185 53-210 (339)
13 cd01897 NOG NOG1 is a nucleola 99.8 1.9E-17 4.2E-22 121.7 14.6 157 20-185 1-162 (168)
14 cd01894 EngA1 EngA1 subfamily. 99.8 2E-17 4.4E-22 120.0 13.6 119 23-151 1-119 (157)
15 PRK00089 era GTPase Era; Revie 99.8 4.2E-17 9E-22 130.5 16.4 123 19-151 5-127 (292)
16 COG1084 Predicted GTPase [Gene 99.8 3E-17 6.5E-22 128.2 14.6 130 13-151 162-294 (346)
17 PRK03003 GTP-binding protein D 99.8 3.8E-17 8.2E-22 138.6 16.2 158 17-185 36-193 (472)
18 TIGR03594 GTPase_EngA ribosome 99.8 4.5E-17 9.8E-22 137.0 16.0 153 21-184 1-153 (429)
19 cd01898 Obg Obg subfamily. Th 99.8 3.8E-17 8.3E-22 120.3 13.8 157 21-184 2-164 (170)
20 cd01878 HflX HflX subfamily. 99.7 7.3E-17 1.6E-21 122.5 15.3 158 18-184 40-198 (204)
21 TIGR03598 GTPase_YsxC ribosome 99.7 2.2E-16 4.9E-21 117.5 17.0 125 17-151 16-143 (179)
22 PRK12299 obgE GTPase CgtA; Rev 99.7 1.1E-16 2.4E-21 129.4 16.5 125 21-151 160-285 (335)
23 cd01895 EngA2 EngA2 subfamily. 99.7 1.6E-16 3.4E-21 117.0 15.8 127 19-152 2-128 (174)
24 cd04124 RabL2 RabL2 subfamily. 99.7 3.3E-17 7.3E-22 119.8 11.6 150 20-185 1-152 (161)
25 PRK00093 GTP-binding protein D 99.7 1.2E-16 2.7E-21 134.5 16.4 154 20-184 2-155 (435)
26 cd04119 RJL RJL (RabJ-Like) su 99.7 9.5E-17 2.1E-21 117.7 13.2 152 20-184 1-160 (168)
27 cd04163 Era Era subfamily. Er 99.7 2.3E-16 5E-21 115.2 15.2 123 19-151 3-125 (168)
28 TIGR03156 GTP_HflX GTP-binding 99.7 1.9E-16 4.2E-21 129.0 16.1 157 18-184 188-345 (351)
29 cd04164 trmE TrmE (MnmE, ThdF, 99.7 2.7E-16 6E-21 113.9 15.1 121 19-151 1-121 (157)
30 cd01866 Rab2 Rab2 subfamily. 99.7 2.7E-16 5.8E-21 115.8 14.5 119 19-151 4-123 (168)
31 KOG0084 GTPase Rab1/YPT1, smal 99.7 2.2E-16 4.7E-21 114.6 13.5 155 17-185 7-166 (205)
32 COG1160 Predicted GTPases [Gen 99.7 2.4E-16 5.1E-21 128.5 14.6 136 18-160 177-312 (444)
33 PRK12298 obgE GTPase CgtA; Rev 99.7 5.7E-16 1.2E-20 127.7 16.8 125 21-151 161-289 (390)
34 cd00877 Ran Ran (Ras-related n 99.7 2.4E-16 5.3E-21 115.8 13.0 148 20-185 1-153 (166)
35 PTZ00369 Ras-like protein; Pro 99.7 3.2E-16 6.9E-21 117.6 13.8 152 19-185 5-161 (189)
36 cd04171 SelB SelB subfamily. 99.7 6.5E-16 1.4E-20 112.9 15.0 116 21-151 2-118 (164)
37 cd04122 Rab14 Rab14 subfamily. 99.7 4.4E-16 9.5E-21 114.4 14.0 150 20-185 3-158 (166)
38 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 3.8E-16 8.3E-21 118.3 13.9 153 20-185 1-162 (201)
39 PRK12297 obgE GTPase CgtA; Rev 99.7 1.3E-15 2.7E-20 126.4 17.8 157 21-184 160-320 (424)
40 cd04140 ARHI_like ARHI subfami 99.7 2.4E-16 5.3E-21 115.7 12.2 153 20-185 2-159 (165)
41 PRK00093 GTP-binding protein D 99.7 9.5E-16 2.1E-20 129.2 17.4 127 18-151 172-298 (435)
42 cd04120 Rab12 Rab12 subfamily. 99.7 2.8E-16 6.1E-21 118.8 12.7 149 21-185 2-157 (202)
43 cd01881 Obg_like The Obg-like 99.7 3.2E-16 6.9E-21 115.9 12.6 121 24-151 1-134 (176)
44 cd01867 Rab8_Rab10_Rab13_like 99.7 8.3E-16 1.8E-20 113.1 14.6 150 19-184 3-158 (167)
45 TIGR03594 GTPase_EngA ribosome 99.7 1.5E-15 3.2E-20 127.9 17.8 126 18-150 171-296 (429)
46 TIGR00450 mnmE_trmE_thdF tRNA 99.7 1.6E-15 3.5E-20 127.0 17.3 123 18-151 202-324 (442)
47 cd01865 Rab3 Rab3 subfamily. 99.7 5.9E-16 1.3E-20 113.6 13.1 150 20-185 2-157 (165)
48 cd04145 M_R_Ras_like M-Ras/R-R 99.7 7E-16 1.5E-20 112.8 13.4 151 19-185 2-158 (164)
49 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 4.9E-16 1.1E-20 114.1 12.5 150 20-185 3-158 (166)
50 cd04113 Rab4 Rab4 subfamily. 99.7 4.8E-16 1E-20 113.5 12.4 150 20-184 1-155 (161)
51 cd04127 Rab27A Rab27a subfamil 99.7 1.2E-15 2.7E-20 113.4 14.7 153 19-185 4-171 (180)
52 cd01863 Rab18 Rab18 subfamily. 99.7 4.8E-16 1E-20 113.5 12.1 151 20-184 1-155 (161)
53 PRK09518 bifunctional cytidyla 99.7 1.5E-15 3.3E-20 134.5 17.1 157 18-185 274-430 (712)
54 cd04142 RRP22 RRP22 subfamily. 99.7 8.5E-16 1.8E-20 116.1 13.4 160 20-185 1-168 (198)
55 cd04121 Rab40 Rab40 subfamily. 99.7 8.9E-16 1.9E-20 115.0 13.3 151 18-185 5-161 (189)
56 PRK03003 GTP-binding protein D 99.7 6.4E-15 1.4E-19 125.1 20.1 125 18-151 210-336 (472)
57 cd04110 Rab35 Rab35 subfamily. 99.7 7.3E-16 1.6E-20 116.6 12.9 151 18-185 5-161 (199)
58 PRK11058 GTPase HflX; Provisio 99.7 1.6E-15 3.5E-20 126.3 16.1 125 20-151 198-323 (426)
59 cd01864 Rab19 Rab19 subfamily. 99.7 1.4E-15 3.1E-20 111.5 14.1 150 19-184 3-159 (165)
60 cd01850 CDC_Septin CDC/Septin. 99.7 2.7E-15 6E-20 118.6 16.3 125 19-151 4-157 (276)
61 cd04125 RabA_like RabA-like su 99.7 6.8E-16 1.5E-20 115.7 12.3 151 20-185 1-156 (188)
62 PRK04213 GTP-binding protein; 99.7 3.3E-15 7.1E-20 113.2 16.0 122 18-151 8-144 (201)
63 smart00175 RAB Rab subfamily o 99.7 1.3E-15 2.8E-20 111.4 13.4 116 20-151 1-119 (164)
64 cd01861 Rab6 Rab6 subfamily. 99.7 9.5E-16 2.1E-20 111.8 12.5 116 20-151 1-119 (161)
65 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 1.1E-15 2.4E-20 112.2 12.8 114 20-151 1-116 (168)
66 cd04109 Rab28 Rab28 subfamily. 99.7 5.9E-16 1.3E-20 118.5 11.8 153 20-185 1-160 (215)
67 TIGR02729 Obg_CgtA Obg family 99.7 2.4E-15 5.1E-20 121.6 15.8 125 21-151 159-287 (329)
68 PLN03071 GTP-binding nuclear p 99.7 1.3E-15 2.8E-20 116.9 13.4 152 17-185 11-166 (219)
69 smart00173 RAS Ras subfamily o 99.7 9.9E-16 2.2E-20 112.1 12.2 150 20-185 1-156 (164)
70 cd01868 Rab11_like Rab11-like. 99.7 1.5E-15 3.2E-20 111.3 13.2 117 19-151 3-122 (165)
71 PRK00454 engB GTP-binding prot 99.7 8.3E-15 1.8E-19 110.4 17.5 125 17-151 22-149 (196)
72 cd01860 Rab5_related Rab5-rela 99.7 1.7E-15 3.6E-20 110.8 13.1 118 20-151 2-120 (163)
73 cd00154 Rab Rab family. Rab G 99.7 1.4E-15 3E-20 110.1 12.6 117 20-150 1-118 (159)
74 cd04115 Rab33B_Rab33A Rab33B/R 99.7 3.2E-15 6.9E-20 110.3 14.5 119 19-151 2-123 (170)
75 cd04154 Arl2 Arl2 subfamily. 99.7 1.7E-15 3.6E-20 112.1 13.1 153 15-185 10-169 (173)
76 cd04136 Rap_like Rap-like subf 99.7 1.3E-15 2.7E-20 111.4 12.0 116 20-151 2-120 (163)
77 cd04112 Rab26 Rab26 subfamily. 99.7 3.3E-15 7.1E-20 112.3 14.4 152 20-185 1-157 (191)
78 PLN03110 Rab GTPase; Provision 99.7 4E-15 8.6E-20 114.0 15.0 153 18-185 11-168 (216)
79 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 1.2E-15 2.6E-20 113.8 11.6 116 17-150 3-122 (182)
80 cd04106 Rab23_lke Rab23-like s 99.7 2.2E-15 4.9E-20 110.0 12.7 115 21-151 2-120 (162)
81 cd04144 Ras2 Ras2 subfamily. 99.7 1.2E-15 2.7E-20 114.5 11.6 150 21-185 1-157 (190)
82 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 2E-15 4.4E-20 111.6 12.6 150 20-185 3-158 (172)
83 cd04131 Rnd Rnd subfamily. Th 99.7 1.6E-15 3.4E-20 112.7 12.0 113 20-150 2-118 (178)
84 cd04104 p47_IIGP_like p47 (47- 99.7 2.1E-15 4.5E-20 113.9 12.7 117 20-151 2-121 (197)
85 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 1.4E-15 3.1E-20 112.2 11.5 117 21-151 2-120 (170)
86 PRK12296 obgE GTPase CgtA; Rev 99.7 4E-15 8.6E-20 125.0 15.4 124 21-151 161-298 (500)
87 cd01884 EF_Tu EF-Tu subfamily. 99.7 3.2E-15 7E-20 112.4 13.5 117 19-151 2-132 (195)
88 cd04132 Rho4_like Rho4-like su 99.7 2E-15 4.4E-20 113.0 12.2 148 20-185 1-161 (187)
89 COG0486 ThdF Predicted GTPase 99.7 3.8E-15 8.3E-20 121.8 14.7 124 17-151 215-338 (454)
90 cd04133 Rop_like Rop subfamily 99.7 3.9E-15 8.5E-20 110.3 13.6 149 20-185 2-167 (176)
91 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 4.3E-15 9.4E-20 110.9 13.9 152 19-185 3-164 (183)
92 cd04138 H_N_K_Ras_like H-Ras/N 99.7 3.5E-15 7.5E-20 108.7 13.1 150 20-185 2-156 (162)
93 cd04117 Rab15 Rab15 subfamily. 99.7 2E-15 4.3E-20 110.4 11.7 149 21-185 2-156 (161)
94 cd00881 GTP_translation_factor 99.7 1.9E-15 4E-20 113.0 11.7 114 21-151 1-128 (189)
95 cd04123 Rab21 Rab21 subfamily. 99.7 3.5E-15 7.5E-20 108.7 12.8 117 20-151 1-119 (162)
96 cd01862 Rab7 Rab7 subfamily. 99.7 2.6E-15 5.6E-20 110.7 12.2 151 20-184 1-160 (172)
97 cd01891 TypA_BipA TypA (tyrosi 99.7 3.2E-15 6.9E-20 112.7 12.8 116 19-151 2-131 (194)
98 PRK05291 trmE tRNA modificatio 99.7 3E-15 6.5E-20 126.0 14.0 122 18-151 214-335 (449)
99 cd04126 Rab20 Rab20 subfamily. 99.7 6.7E-15 1.5E-19 112.6 14.7 113 20-151 1-114 (220)
100 cd04116 Rab9 Rab9 subfamily. 99.6 5.1E-15 1.1E-19 109.1 13.5 154 18-185 4-165 (170)
101 cd01886 EF-G Elongation factor 99.6 3E-15 6.4E-20 118.0 12.8 115 21-152 1-131 (270)
102 cd01896 DRG The developmentall 99.6 1E-14 2.2E-19 112.8 15.5 88 21-115 2-89 (233)
103 cd04118 Rab24 Rab24 subfamily. 99.6 3.3E-15 7.2E-20 112.4 12.6 114 20-151 1-119 (193)
104 cd04111 Rab39 Rab39 subfamily. 99.6 5.3E-15 1.2E-19 112.9 13.7 153 19-185 2-160 (211)
105 PLN03108 Rab family protein; P 99.6 9.4E-15 2E-19 111.5 14.9 151 19-185 6-162 (210)
106 cd04175 Rap1 Rap1 subgroup. T 99.6 2.6E-15 5.5E-20 110.0 11.2 149 20-184 2-156 (164)
107 PF00009 GTP_EFTU: Elongation 99.6 2.9E-15 6.3E-20 112.3 11.6 117 18-151 2-136 (188)
108 cd04101 RabL4 RabL4 (Rab-like4 99.6 7.3E-15 1.6E-19 107.5 13.4 117 20-151 1-121 (164)
109 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 2.2E-14 4.8E-19 105.2 15.9 111 22-151 2-113 (164)
110 cd04160 Arfrp1 Arfrp1 subfamil 99.6 4.5E-15 9.7E-20 109.0 12.0 129 21-162 1-133 (167)
111 PLN03118 Rab family protein; P 99.6 1.1E-14 2.3E-19 111.3 13.9 157 14-185 9-171 (211)
112 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 8.2E-15 1.8E-19 112.8 13.3 151 18-185 12-182 (232)
113 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.6 8.7E-15 1.9E-19 106.1 12.5 124 16-152 19-143 (221)
114 cd01879 FeoB Ferrous iron tran 99.6 8.1E-15 1.7E-19 106.5 12.5 115 24-151 1-115 (158)
115 cd04146 RERG_RasL11_like RERG/ 99.6 5.2E-15 1.1E-19 108.5 11.6 117 21-151 1-120 (165)
116 cd04157 Arl6 Arl6 subfamily. 99.6 7.4E-15 1.6E-19 107.2 12.3 116 21-151 1-118 (162)
117 cd04168 TetM_like Tet(M)-like 99.6 8E-15 1.7E-19 113.6 13.1 115 21-152 1-131 (237)
118 KOG0092 GTPase Rab5/YPT51 and 99.6 4.3E-15 9.2E-20 107.6 10.5 154 18-185 4-161 (200)
119 cd04114 Rab30 Rab30 subfamily. 99.6 3.8E-15 8.3E-20 109.5 10.6 118 18-151 6-126 (169)
120 cd00157 Rho Rho (Ras homology) 99.6 7.2E-15 1.6E-19 108.2 11.9 115 20-151 1-118 (171)
121 cd04166 CysN_ATPS CysN_ATPS su 99.6 1.2E-14 2.7E-19 110.6 13.5 115 21-151 1-144 (208)
122 smart00174 RHO Rho (Ras homolo 99.6 4.7E-15 1E-19 109.6 10.9 112 22-151 1-116 (174)
123 cd00879 Sar1 Sar1 subfamily. 99.6 1.2E-14 2.7E-19 109.0 13.3 128 17-162 17-146 (190)
124 KOG0078 GTP-binding protein SE 99.6 1.1E-14 2.4E-19 107.1 12.5 157 15-185 8-168 (207)
125 cd04158 ARD1 ARD1 subfamily. 99.6 1.5E-14 3.3E-19 106.6 13.3 147 21-185 1-155 (169)
126 cd01890 LepA LepA subfamily. 99.6 5.1E-15 1.1E-19 109.9 10.8 116 20-151 1-133 (179)
127 PF08477 Miro: Miro-like prote 99.6 1.2E-15 2.7E-20 105.8 7.0 116 21-148 1-119 (119)
128 KOG0098 GTPase Rab2, small G p 99.6 3.2E-14 6.8E-19 102.5 14.1 154 18-185 5-162 (216)
129 cd04128 Spg1 Spg1p. Spg1p (se 99.6 1E-14 2.2E-19 108.8 12.3 114 20-150 1-117 (182)
130 cd04151 Arl1 Arl1 subfamily. 99.6 9.7E-15 2.1E-19 106.4 11.8 145 21-184 1-153 (158)
131 cd04148 RGK RGK subfamily. Th 99.6 1.4E-14 3.1E-19 111.3 13.2 117 20-151 1-120 (221)
132 PRK09554 feoB ferrous iron tra 99.6 2.8E-14 6.1E-19 126.4 16.9 122 19-151 3-126 (772)
133 PRK09518 bifunctional cytidyla 99.6 3E-14 6.5E-19 126.4 17.1 125 18-151 449-575 (712)
134 cd01893 Miro1 Miro1 subfamily. 99.6 1.2E-14 2.5E-19 106.9 12.2 114 21-151 2-117 (166)
135 cd04161 Arl2l1_Arl13_like Arl2 99.6 2.6E-14 5.6E-19 105.2 14.0 113 21-151 1-114 (167)
136 cd04139 RalA_RalB RalA/RalB su 99.6 1.8E-14 3.9E-19 105.2 13.0 118 20-151 1-119 (164)
137 cd00880 Era_like Era (E. coli 99.6 4.2E-14 9.1E-19 102.2 14.8 118 24-151 1-118 (163)
138 COG3596 Predicted GTPase [Gene 99.6 3.9E-15 8.5E-20 113.9 9.5 127 16-152 36-163 (296)
139 PRK15467 ethanolamine utilizat 99.6 5.8E-15 1.3E-19 107.6 10.1 138 20-185 2-141 (158)
140 cd04169 RF3 RF3 subfamily. Pe 99.6 2.2E-14 4.8E-19 112.9 14.0 117 19-152 2-138 (267)
141 cd04176 Rap2 Rap2 subgroup. T 99.6 1.3E-14 2.8E-19 106.1 11.9 116 20-151 2-120 (163)
142 cd04134 Rho3 Rho3 subfamily. 99.6 1E-14 2.3E-19 109.4 11.6 114 20-151 1-118 (189)
143 cd01876 YihA_EngB The YihA (En 99.6 5.2E-14 1.1E-18 102.9 15.1 120 22-151 2-124 (170)
144 cd04170 EF-G_bact Elongation f 99.6 3.8E-14 8.2E-19 112.1 15.2 115 21-152 1-131 (268)
145 PTZ00133 ADP-ribosylation fact 99.6 2.2E-14 4.8E-19 107.0 13.0 149 18-185 16-172 (182)
146 cd01874 Cdc42 Cdc42 subfamily. 99.6 1.2E-14 2.6E-19 107.7 11.5 113 20-151 2-119 (175)
147 PF00735 Septin: Septin; Inte 99.6 3.4E-14 7.3E-19 112.3 14.3 132 19-159 4-162 (281)
148 cd01871 Rac1_like Rac1-like su 99.6 1.6E-14 3.5E-19 107.0 11.8 114 20-151 2-119 (174)
149 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 3.6E-14 7.8E-19 105.1 13.6 115 19-151 15-130 (174)
150 KOG0087 GTPase Rab11/YPT3, sma 99.6 2.3E-14 5.1E-19 105.2 12.2 121 17-151 12-133 (222)
151 cd04149 Arf6 Arf6 subfamily. 99.6 3.1E-14 6.7E-19 104.9 12.9 147 19-184 9-163 (168)
152 PLN00223 ADP-ribosylation fact 99.6 5.7E-14 1.2E-18 104.7 14.5 149 18-185 16-172 (181)
153 smart00177 ARF ARF-like small 99.6 3.3E-14 7.1E-19 105.4 13.1 115 19-151 13-128 (175)
154 cd01875 RhoG RhoG subfamily. 99.6 1.3E-14 2.7E-19 109.1 11.0 115 19-151 3-121 (191)
155 TIGR00487 IF-2 translation ini 99.6 2.9E-14 6.2E-19 123.0 14.6 128 17-162 85-212 (587)
156 smart00178 SAR Sar1p-like memb 99.6 2E-14 4.3E-19 107.5 11.9 127 17-161 15-143 (184)
157 cd00878 Arf_Arl Arf (ADP-ribos 99.6 3.1E-14 6.8E-19 103.5 12.5 113 21-151 1-114 (158)
158 cd04177 RSR1 RSR1 subgroup. R 99.6 2.6E-14 5.5E-19 105.2 12.0 117 20-151 2-120 (168)
159 cd01889 SelB_euk SelB subfamil 99.6 4.6E-14 1E-18 106.2 13.6 115 21-151 2-134 (192)
160 cd04155 Arl3 Arl3 subfamily. 99.6 4.1E-14 8.8E-19 104.5 12.9 117 17-151 12-129 (173)
161 cd01888 eIF2_gamma eIF2-gamma 99.6 5E-14 1.1E-18 106.9 13.5 117 20-151 1-151 (203)
162 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 4.7E-14 1E-18 108.1 13.3 115 20-151 2-119 (222)
163 TIGR02528 EutP ethanolamine ut 99.6 1.2E-14 2.6E-19 104.0 9.5 134 21-184 2-138 (142)
164 PF00071 Ras: Ras family; Int 99.6 9.9E-15 2.1E-19 106.6 9.3 150 21-185 1-155 (162)
165 CHL00071 tufA elongation facto 99.6 3.1E-14 6.8E-19 118.7 13.3 120 16-151 9-142 (409)
166 PRK05306 infB translation init 99.6 3.8E-14 8.2E-19 125.2 14.4 117 16-151 287-403 (787)
167 cd04130 Wrch_1 Wrch-1 subfamil 99.6 2.4E-14 5.2E-19 105.9 11.2 114 20-151 1-118 (173)
168 cd04156 ARLTS1 ARLTS1 subfamil 99.6 4.6E-14 1E-18 102.8 12.3 114 21-151 1-115 (160)
169 KOG0095 GTPase Rab30, small G 99.6 2E-13 4.4E-18 94.8 14.5 152 20-185 8-163 (213)
170 cd04135 Tc10 TC10 subfamily. 99.6 4.5E-14 9.7E-19 104.4 12.1 114 20-151 1-118 (174)
171 cd04102 RabL3 RabL3 (Rab-like3 99.6 7E-14 1.5E-18 105.7 13.2 118 21-151 2-143 (202)
172 cd04150 Arf1_5_like Arf1-Arf5- 99.6 6.1E-14 1.3E-18 102.4 12.5 112 21-151 2-115 (159)
173 PF00350 Dynamin_N: Dynamin fa 99.6 2.6E-14 5.7E-19 105.1 10.6 115 22-147 1-168 (168)
174 cd04137 RheB Rheb (Ras Homolog 99.6 3.4E-14 7.4E-19 105.7 11.2 116 20-151 2-120 (180)
175 COG2262 HflX GTPases [General 99.6 8.8E-14 1.9E-18 112.0 14.1 128 17-151 190-318 (411)
176 KOG0079 GTP-binding protein H- 99.6 2.3E-13 5E-18 94.4 14.0 150 20-185 9-163 (198)
177 cd00876 Ras Ras family. The R 99.6 8.6E-14 1.9E-18 101.1 12.8 148 21-184 1-154 (160)
178 cd04159 Arl10_like Arl10-like 99.6 9.2E-14 2E-18 100.6 12.8 113 22-151 2-115 (159)
179 cd04143 Rhes_like Rhes_like su 99.6 2.2E-14 4.9E-19 111.7 10.0 151 20-185 1-165 (247)
180 smart00053 DYNc Dynamin, GTPas 99.6 3.9E-13 8.4E-18 103.6 16.5 140 18-163 25-217 (240)
181 TIGR00491 aIF-2 translation in 99.6 2.3E-13 5E-18 117.3 16.9 116 18-151 3-135 (590)
182 PRK12317 elongation factor 1-a 99.6 7.1E-14 1.5E-18 117.4 13.0 120 16-151 3-153 (425)
183 cd01892 Miro2 Miro2 subfamily. 99.6 1.8E-13 3.9E-18 100.9 13.6 118 18-151 3-122 (169)
184 smart00176 RAN Ran (Ras-relate 99.5 5.4E-14 1.2E-18 106.2 10.7 143 25-185 1-148 (200)
185 cd01885 EF2 EF2 (for archaea a 99.5 8.1E-14 1.8E-18 106.6 11.2 115 20-150 1-138 (222)
186 cd04147 Ras_dva Ras-dva subfam 99.5 9.5E-14 2.1E-18 105.0 11.4 115 21-151 1-118 (198)
187 KOG0080 GTPase Rab18, small G 99.5 1.9E-13 4.1E-18 96.1 11.8 156 17-185 9-168 (209)
188 PLN00023 GTP-binding protein; 99.5 2.1E-13 4.6E-18 108.4 13.1 123 16-151 18-165 (334)
189 TIGR01394 TypA_BipA GTP-bindin 99.5 1.8E-13 3.9E-18 118.4 13.5 115 20-151 2-130 (594)
190 CHL00189 infB translation init 99.5 3.4E-13 7.5E-18 118.3 15.3 117 17-151 242-361 (742)
191 PRK12735 elongation factor Tu; 99.5 2.6E-13 5.7E-18 112.8 13.9 119 17-151 10-142 (396)
192 PRK04004 translation initiatio 99.5 9.1E-13 2E-17 114.0 17.3 116 17-150 4-136 (586)
193 TIGR00484 EF-G translation elo 99.5 2.3E-13 5E-18 120.4 13.9 121 15-152 6-142 (689)
194 KOG1547 Septin CDC10 and relat 99.5 6.5E-13 1.4E-17 99.7 14.1 126 19-151 46-198 (336)
195 PRK00007 elongation factor G; 99.5 1.9E-13 4.1E-18 120.9 13.2 121 16-153 7-143 (693)
196 cd01870 RhoA_like RhoA-like su 99.5 1.8E-13 4E-18 101.2 11.2 114 20-151 2-119 (175)
197 KOG1489 Predicted GTP-binding 99.5 1.9E-13 4.2E-18 106.4 11.4 124 21-151 198-326 (366)
198 TIGR00231 small_GTP small GTP- 99.5 6.1E-13 1.3E-17 96.0 13.6 116 20-151 2-122 (161)
199 cd04105 SR_beta Signal recogni 99.5 3.4E-13 7.5E-18 102.2 12.7 115 20-151 1-123 (203)
200 cd04103 Centaurin_gamma Centau 99.5 2.4E-13 5.2E-18 99.1 11.1 144 20-185 1-153 (158)
201 cd04167 Snu114p Snu114p subfam 99.5 1.9E-13 4.2E-18 104.5 11.0 115 20-150 1-136 (213)
202 PRK09866 hypothetical protein; 99.5 8.6E-13 1.9E-17 112.4 15.8 85 69-162 230-317 (741)
203 PLN03127 Elongation factor Tu; 99.5 4.8E-13 1E-17 112.4 14.3 121 15-151 57-191 (447)
204 cd01873 RhoBTB RhoBTB subfamil 99.5 3.4E-13 7.4E-18 101.6 12.0 116 19-151 2-134 (195)
205 PRK00049 elongation factor Tu; 99.5 3.4E-13 7.3E-18 112.1 13.0 118 17-151 10-142 (396)
206 KOG1423 Ras-like GTPase ERA [C 99.5 3E-13 6.5E-18 104.9 11.6 129 17-151 70-199 (379)
207 PRK10512 selenocysteinyl-tRNA- 99.5 8.6E-13 1.9E-17 114.7 15.8 116 21-151 2-118 (614)
208 COG5019 CDC3 Septin family pro 99.5 1.1E-12 2.3E-17 104.4 14.9 128 17-151 21-176 (373)
209 PF10662 PduV-EutP: Ethanolami 99.5 1.4E-13 3E-18 96.9 8.7 132 20-181 2-136 (143)
210 PRK12739 elongation factor G; 99.5 4.1E-13 9E-18 118.8 13.9 120 16-152 5-140 (691)
211 PRK10218 GTP-binding protein; 99.5 7.7E-13 1.7E-17 114.5 15.1 116 19-151 5-134 (607)
212 PRK12736 elongation factor Tu; 99.5 5.6E-13 1.2E-17 110.8 13.7 120 16-151 9-142 (394)
213 TIGR00475 selB selenocysteine- 99.5 1.3E-12 2.7E-17 113.3 16.2 115 21-151 2-117 (581)
214 TIGR00503 prfC peptide chain r 99.5 6.8E-13 1.5E-17 113.4 14.2 119 16-151 8-146 (527)
215 TIGR00485 EF-Tu translation el 99.5 6.6E-13 1.4E-17 110.4 13.3 120 16-151 9-142 (394)
216 PRK05124 cysN sulfate adenylyl 99.5 4E-13 8.8E-18 113.7 11.9 123 13-151 21-174 (474)
217 PTZ00132 GTP-binding nuclear p 99.5 6.6E-13 1.4E-17 101.7 12.0 120 17-151 7-127 (215)
218 KOG0394 Ras-related GTPase [Ge 99.5 2.8E-13 6.1E-18 97.4 9.0 156 18-185 8-172 (210)
219 cd00882 Ras_like_GTPase Ras-li 99.5 2.5E-13 5.4E-18 97.1 8.7 113 24-151 1-116 (157)
220 cd04129 Rho2 Rho2 subfamily. 99.5 8.1E-13 1.7E-17 99.0 11.8 113 20-150 2-118 (187)
221 KOG1191 Mitochondrial GTPase [ 99.5 5.8E-13 1.2E-17 109.2 11.6 131 17-151 266-403 (531)
222 PRK00741 prfC peptide chain re 99.5 1.1E-12 2.5E-17 112.0 13.8 120 17-153 8-147 (526)
223 KOG0088 GTPase Rab21, small G 99.5 9.4E-14 2E-18 97.4 5.8 153 19-185 13-169 (218)
224 PLN03126 Elongation factor Tu; 99.5 1.7E-12 3.6E-17 109.8 14.5 120 16-151 78-211 (478)
225 TIGR01393 lepA GTP-binding pro 99.5 1.1E-12 2.4E-17 113.8 13.0 117 19-151 3-136 (595)
226 PF00025 Arf: ADP-ribosylation 99.5 9.7E-13 2.1E-17 97.5 10.9 127 17-162 12-141 (175)
227 cd01883 EF1_alpha Eukaryotic e 99.4 1.5E-12 3.2E-17 100.0 11.8 115 21-151 1-151 (219)
228 COG0370 FeoB Fe2+ transport sy 99.4 1.7E-12 3.6E-17 110.8 12.6 121 19-152 3-123 (653)
229 PRK13351 elongation factor G; 99.4 1.6E-12 3.5E-17 115.3 13.1 119 17-152 6-140 (687)
230 KOG0086 GTPase Rab4, small G p 99.4 4.6E-12 9.9E-17 88.5 12.4 151 19-183 9-163 (214)
231 cd04165 GTPBP1_like GTPBP1-lik 99.4 6.1E-12 1.3E-16 96.6 14.4 116 21-151 1-152 (224)
232 KOG0093 GTPase Rab3, small G p 99.4 9.5E-12 2.1E-16 86.4 13.6 121 17-152 19-141 (193)
233 COG0536 Obg Predicted GTPase [ 99.4 4.6E-12 1E-16 99.9 13.3 123 22-151 162-289 (369)
234 KOG1490 GTP-binding protein CR 99.4 3.3E-13 7.3E-18 110.7 7.2 133 12-152 161-296 (620)
235 COG1100 GTPase SAR1 and relate 99.4 5.8E-12 1.3E-16 96.5 13.6 119 20-152 6-126 (219)
236 TIGR02034 CysN sulfate adenyly 99.4 3.9E-12 8.5E-17 106.1 13.3 116 20-151 1-147 (406)
237 PRK05506 bifunctional sulfate 99.4 3.7E-12 8E-17 111.9 13.7 121 15-151 20-171 (632)
238 TIGR00483 EF-1_alpha translati 99.4 4.8E-12 1E-16 106.4 13.7 120 16-151 4-155 (426)
239 TIGR00437 feoB ferrous iron tr 99.4 3E-12 6.6E-17 111.0 12.8 113 26-151 1-113 (591)
240 KOG2655 Septin family protein 99.4 6.3E-12 1.4E-16 100.8 13.2 127 18-151 20-172 (366)
241 KOG0073 GTP-binding ADP-ribosy 99.4 6.2E-12 1.3E-16 88.9 11.4 114 18-150 15-130 (185)
242 PRK05433 GTP-binding protein L 99.4 4.9E-12 1.1E-16 109.8 13.0 119 17-151 5-140 (600)
243 KOG1145 Mitochondrial translat 99.4 3.6E-12 7.9E-17 105.7 11.3 123 17-157 151-273 (683)
244 COG1163 DRG Predicted GTPase [ 99.4 2.5E-12 5.4E-17 100.6 9.6 88 20-114 64-151 (365)
245 PTZ00416 elongation factor 2; 99.4 2.2E-12 4.7E-17 116.1 10.4 120 15-150 15-157 (836)
246 COG0532 InfB Translation initi 99.4 5.5E-12 1.2E-16 104.8 11.9 127 18-162 4-132 (509)
247 PF05049 IIGP: Interferon-indu 99.4 1.8E-12 3.9E-17 105.1 8.5 119 18-149 34-153 (376)
248 cd01882 BMS1 Bms1. Bms1 is an 99.4 1.5E-11 3.3E-16 94.6 12.8 112 16-151 36-147 (225)
249 PTZ00141 elongation factor 1- 99.4 1.4E-11 3E-16 103.7 13.6 118 16-149 4-157 (446)
250 PF09439 SRPRB: Signal recogni 99.4 2E-12 4.4E-17 95.0 7.2 119 19-151 3-126 (181)
251 COG2229 Predicted GTPase [Gene 99.4 6.4E-11 1.4E-15 85.6 14.7 132 17-163 8-148 (187)
252 TIGR00490 aEF-2 translation el 99.4 3.3E-12 7.2E-17 113.4 9.9 120 15-151 15-152 (720)
253 PRK04000 translation initiatio 99.3 2.6E-11 5.7E-16 101.2 13.8 122 15-151 5-153 (411)
254 PLN00116 translation elongatio 99.3 5.3E-12 1.2E-16 113.8 10.2 121 14-150 14-163 (843)
255 TIGR03680 eif2g_arch translati 99.3 2.4E-11 5.2E-16 101.4 12.9 119 18-151 3-148 (406)
256 KOG1707 Predicted Ras related/ 99.3 9.9E-12 2.1E-16 103.9 10.0 123 16-152 6-130 (625)
257 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 5.5E-11 1.2E-15 91.2 12.9 124 21-151 1-125 (232)
258 KOG0395 Ras-related GTPase [Ge 99.3 2.2E-11 4.8E-16 91.5 9.4 153 19-185 3-159 (196)
259 COG0480 FusA Translation elong 99.3 3.5E-11 7.5E-16 105.2 11.7 121 16-153 7-144 (697)
260 cd01900 YchF YchF subfamily. 99.3 2.9E-11 6.3E-16 95.0 10.1 87 22-114 1-103 (274)
261 KOG0091 GTPase Rab39, small G 99.3 5.6E-11 1.2E-15 84.0 10.3 155 19-184 8-166 (213)
262 PTZ00258 GTP-binding protein; 99.3 5E-11 1.1E-15 97.8 11.4 92 17-114 19-126 (390)
263 KOG0462 Elongation factor-type 99.3 6E-11 1.3E-15 98.6 11.0 153 15-184 56-228 (650)
264 PRK09601 GTP-binding protein Y 99.3 7.2E-11 1.6E-15 95.8 11.3 89 20-114 3-107 (364)
265 TIGR02836 spore_IV_A stage IV 99.3 1.1E-10 2.4E-15 95.1 11.9 131 16-151 14-194 (492)
266 PRK07560 elongation factor EF- 99.2 2.5E-11 5.4E-16 108.2 7.9 122 14-151 15-153 (731)
267 COG1217 TypA Predicted membran 99.2 1.7E-10 3.7E-15 94.3 11.2 119 19-154 5-137 (603)
268 KOG0081 GTPase Rab27, small G 99.2 2.7E-11 5.9E-16 85.2 5.5 169 20-207 10-190 (219)
269 PRK12740 elongation factor G; 99.2 1.7E-10 3.7E-15 102.2 11.9 111 25-152 1-127 (668)
270 PLN00043 elongation factor 1-a 99.2 4.1E-10 8.9E-15 94.9 12.9 119 16-150 4-158 (447)
271 TIGR03348 VI_IcmF type VI secr 99.2 2.9E-10 6.2E-15 105.9 13.0 131 20-162 112-264 (1169)
272 KOG0393 Ras-related small GTPa 99.2 1.1E-10 2.4E-15 86.4 7.8 116 19-151 4-123 (198)
273 PF03193 DUF258: Protein of un 99.2 2.5E-11 5.3E-16 87.6 3.5 62 19-84 35-102 (161)
274 cd01858 NGP_1 NGP-1. Autoanti 99.2 1.3E-10 2.8E-15 84.6 7.2 57 18-79 101-157 (157)
275 PTZ00327 eukaryotic translatio 99.1 9.3E-10 2E-14 92.7 13.3 121 16-151 31-185 (460)
276 KOG1954 Endocytosis/signaling 99.1 2.6E-10 5.7E-15 90.8 8.9 130 17-151 56-225 (532)
277 PRK09602 translation-associate 99.1 6.2E-10 1.3E-14 92.2 11.4 89 20-114 2-113 (396)
278 cd01899 Ygr210 Ygr210 subfamil 99.1 7.1E-10 1.5E-14 89.3 10.9 87 22-114 1-110 (318)
279 KOG4252 GTP-binding protein [S 99.1 2E-10 4.3E-15 82.5 6.5 119 18-151 19-138 (246)
280 COG4917 EutP Ethanolamine util 99.1 1.4E-10 3.1E-15 78.4 5.4 115 20-163 2-117 (148)
281 cd01851 GBP Guanylate-binding 99.1 6.4E-09 1.4E-13 80.0 15.2 95 17-114 5-102 (224)
282 KOG0448 Mitofusin 1 GTPase, in 99.1 1.1E-09 2.4E-14 93.3 10.9 129 19-160 109-284 (749)
283 KOG2486 Predicted GTPase [Gene 99.1 2E-09 4.4E-14 82.8 10.8 126 16-151 133-262 (320)
284 COG5256 TEF1 Translation elong 99.1 4.4E-09 9.5E-14 85.3 13.1 131 16-162 4-170 (428)
285 KOG0074 GTP-binding ADP-ribosy 99.1 1.5E-09 3.2E-14 75.1 8.5 122 12-151 10-133 (185)
286 KOG0097 GTPase Rab14, small G 99.1 3.7E-09 8E-14 73.1 10.4 151 17-181 9-163 (215)
287 COG3523 IcmF Type VI protein s 99.0 2.2E-09 4.7E-14 98.0 11.8 132 20-163 126-278 (1188)
288 cd04178 Nucleostemin_like Nucl 99.0 6.5E-10 1.4E-14 81.9 6.9 57 18-79 116-172 (172)
289 KOG0071 GTP-binding ADP-ribosy 99.0 1.6E-08 3.5E-13 69.9 12.6 127 17-162 15-144 (180)
290 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 1.1E-09 2.4E-14 78.2 7.0 57 19-80 83-139 (141)
291 PRK13768 GTPase; Provisional 99.0 2.9E-09 6.4E-14 83.4 9.8 79 70-151 98-176 (253)
292 TIGR01425 SRP54_euk signal rec 99.0 6.4E-08 1.4E-12 80.5 18.0 123 17-151 98-253 (429)
293 PRK09563 rbgA GTPase YlqF; Rev 99.0 4.2E-09 9E-14 84.1 9.6 66 17-87 119-184 (287)
294 KOG3883 Ras family small GTPas 99.0 1.4E-08 3E-13 71.3 10.7 120 17-151 7-132 (198)
295 COG1162 Predicted GTPases [Gen 99.0 1.1E-09 2.3E-14 86.1 5.8 63 19-83 164-230 (301)
296 cd01855 YqeH YqeH. YqeH is an 99.0 1.5E-09 3.3E-14 81.4 6.1 57 19-79 127-190 (190)
297 cd01849 YlqF_related_GTPase Yl 98.9 2.8E-09 6E-14 77.4 6.9 58 17-79 98-155 (155)
298 COG4108 PrfC Peptide chain rel 98.9 1.3E-08 2.8E-13 83.0 10.7 121 17-154 10-150 (528)
299 PF00448 SRP54: SRP54-type pro 98.9 3.6E-09 7.8E-14 79.6 7.1 75 69-155 84-158 (196)
300 KOG0468 U5 snRNP-specific prot 98.9 6.1E-09 1.3E-13 88.6 8.9 121 14-150 123-262 (971)
301 TIGR03596 GTPase_YlqF ribosome 98.9 9.1E-09 2E-13 81.7 9.4 63 17-84 116-178 (276)
302 KOG0083 GTPase Rab26/Rab37, sm 98.9 5.9E-10 1.3E-14 76.3 2.1 115 23-151 1-117 (192)
303 PRK12288 GTPase RsgA; Reviewed 98.9 3.1E-09 6.8E-14 86.6 6.5 60 20-83 206-271 (347)
304 KOG0070 GTP-binding ADP-ribosy 98.9 9.9E-09 2.1E-13 74.4 8.3 117 16-151 14-132 (181)
305 KOG0410 Predicted GTP binding 98.9 7.6E-09 1.7E-13 81.3 8.2 127 20-151 179-308 (410)
306 cd01856 YlqF YlqF. Proteins o 98.9 6.2E-09 1.3E-13 76.8 7.4 58 18-80 114-171 (171)
307 KOG0090 Signal recognition par 98.9 1.4E-08 3.1E-13 75.2 9.1 117 20-151 39-159 (238)
308 PRK12289 GTPase RsgA; Reviewed 98.9 5.3E-09 1.1E-13 85.3 6.5 61 20-84 173-239 (352)
309 cd01854 YjeQ_engC YjeQ/EngC. 98.8 1.6E-08 3.5E-13 80.6 8.8 60 20-83 162-227 (287)
310 KOG0075 GTP-binding ADP-ribosy 98.8 7.1E-09 1.5E-13 72.2 5.5 115 19-151 20-136 (186)
311 TIGR00157 ribosome small subun 98.8 5.8E-09 1.3E-13 81.3 5.7 59 20-83 121-185 (245)
312 COG5192 BMS1 GTP-binding prote 98.8 2.1E-08 4.6E-13 84.2 9.1 110 17-151 67-177 (1077)
313 KOG0447 Dynamin-like GTP bindi 98.8 2.2E-07 4.7E-12 78.0 14.9 143 17-162 306-507 (980)
314 COG3276 SelB Selenocysteine-sp 98.8 6.5E-08 1.4E-12 79.2 11.5 123 21-161 2-125 (447)
315 PRK00098 GTPase RsgA; Reviewed 98.8 2.6E-08 5.6E-13 79.9 9.0 60 19-82 164-229 (298)
316 PRK14845 translation initiatio 98.8 2E-08 4.3E-13 91.5 9.1 103 31-151 473-592 (1049)
317 KOG0467 Translation elongation 98.8 1.6E-08 3.5E-13 87.2 7.6 122 12-150 2-137 (887)
318 TIGR03597 GTPase_YqeH ribosome 98.8 1.7E-08 3.7E-13 83.0 7.5 123 19-151 154-280 (360)
319 KOG3859 Septins (P-loop GTPase 98.8 1E-07 2.2E-12 73.7 10.9 127 19-151 42-190 (406)
320 COG0481 LepA Membrane GTPase L 98.8 3.1E-08 6.7E-13 81.6 8.3 154 16-185 6-180 (603)
321 KOG1532 GTPase XAB1, interacts 98.8 1.5E-07 3.2E-12 72.6 11.2 27 16-42 16-42 (366)
322 COG0050 TufB GTPases - transla 98.8 1.1E-07 2.4E-12 74.0 10.5 120 16-151 9-142 (394)
323 KOG1144 Translation initiation 98.8 1.1E-07 2.4E-12 82.1 11.4 116 18-151 474-606 (1064)
324 KOG1486 GTP-binding protein DR 98.7 4E-08 8.6E-13 74.8 7.3 105 20-133 63-167 (364)
325 KOG0458 Elongation factor 1 al 98.7 1.5E-07 3.3E-12 79.2 11.4 133 14-162 172-340 (603)
326 TIGR00092 GTP-binding protein 98.7 6.6E-08 1.4E-12 78.8 9.0 89 20-114 3-108 (368)
327 COG1161 Predicted GTPases [Gen 98.7 3.5E-08 7.6E-13 79.8 7.2 63 18-85 131-193 (322)
328 PRK11889 flhF flagellar biosyn 98.7 1.1E-07 2.5E-12 77.8 10.0 123 18-152 240-392 (436)
329 COG1419 FlhF Flagellar GTP-bin 98.7 6.2E-08 1.3E-12 79.1 8.3 121 18-151 202-352 (407)
330 PRK14722 flhF flagellar biosyn 98.7 1.9E-07 4.2E-12 76.5 11.0 129 17-152 135-296 (374)
331 cd01859 MJ1464 MJ1464. This f 98.7 6.5E-08 1.4E-12 70.2 7.4 57 18-79 100-156 (156)
332 KOG0077 Vesicle coat complex C 98.7 1.7E-07 3.7E-12 66.8 9.1 116 18-151 19-135 (193)
333 PRK09435 membrane ATPase/prote 98.7 1.2E-06 2.7E-11 70.8 15.3 26 16-41 53-78 (332)
334 COG2895 CysN GTPases - Sulfate 98.7 3.8E-07 8.3E-12 72.7 11.3 130 16-161 3-163 (431)
335 PRK10416 signal recognition pa 98.7 2.2E-07 4.7E-12 75.0 10.2 125 17-151 112-273 (318)
336 PRK14723 flhF flagellar biosyn 98.7 1.3E-07 2.8E-12 83.6 9.4 123 19-151 185-337 (767)
337 PTZ00099 rab6; Provisional 98.7 1.9E-07 4.1E-12 69.2 9.0 105 68-185 28-136 (176)
338 TIGR00064 ftsY signal recognit 98.7 7.6E-07 1.6E-11 70.4 12.6 76 67-152 153-232 (272)
339 KOG1424 Predicted GTP-binding 98.7 6.1E-08 1.3E-12 80.5 6.5 62 19-85 314-375 (562)
340 COG0012 Predicted GTPase, prob 98.6 1.5E-07 3.2E-12 75.9 8.5 89 20-114 3-108 (372)
341 PRK14721 flhF flagellar biosyn 98.6 2.4E-07 5.2E-12 77.1 9.4 123 17-152 189-341 (420)
342 PRK13796 GTPase YqeH; Provisio 98.6 6.3E-08 1.4E-12 79.8 5.5 59 19-81 160-222 (365)
343 KOG0096 GTPase Ran/TC4/GSP1 (n 98.6 4.9E-07 1.1E-11 65.9 8.9 120 17-151 8-128 (216)
344 KOG3886 GTP-binding protein [S 98.6 2.3E-07 5E-12 69.8 7.2 124 19-152 4-131 (295)
345 KOG0465 Mitochondrial elongati 98.6 5.7E-07 1.2E-11 76.3 10.3 122 16-154 36-173 (721)
346 PRK12724 flagellar biosynthesi 98.6 2.7E-07 5.9E-12 76.3 8.2 124 18-152 222-374 (432)
347 PRK14974 cell division protein 98.6 8.6E-07 1.9E-11 71.9 10.6 73 68-152 222-294 (336)
348 PRK00771 signal recognition pa 98.5 1.6E-06 3.6E-11 72.7 12.4 71 69-151 176-246 (437)
349 KOG1673 Ras GTPases [General f 98.5 2.5E-07 5.4E-12 65.2 6.1 120 17-151 18-138 (205)
350 KOG0461 Selenocysteine-specifi 98.5 3.7E-06 8.1E-11 67.1 12.8 116 20-151 8-136 (522)
351 KOG0076 GTP-binding ADP-ribosy 98.5 3.3E-07 7.2E-12 65.8 6.1 122 17-151 15-140 (197)
352 PRK05703 flhF flagellar biosyn 98.5 6.3E-07 1.4E-11 75.2 8.8 122 19-152 221-372 (424)
353 PRK12726 flagellar biosynthesi 98.5 1.2E-06 2.7E-11 71.5 10.1 124 17-152 204-357 (407)
354 PF03029 ATP_bind_1: Conserved 98.5 1.7E-07 3.8E-12 72.6 5.0 76 70-151 92-170 (238)
355 TIGR00750 lao LAO/AO transport 98.5 1.3E-06 2.8E-11 70.2 9.9 25 17-41 32-56 (300)
356 cd03229 ABC_Class3 This class 98.5 1.2E-06 2.6E-11 65.1 8.8 29 18-46 25-53 (178)
357 KOG0464 Elongation factor G [T 98.5 2.9E-08 6.2E-13 80.6 0.1 117 18-151 36-168 (753)
358 PRK10867 signal recognition pa 98.5 6E-06 1.3E-10 69.2 13.8 71 68-150 183-253 (433)
359 KOG1491 Predicted GTP-binding 98.5 8.4E-07 1.8E-11 70.5 8.1 91 18-114 19-125 (391)
360 PRK06995 flhF flagellar biosyn 98.5 7.9E-07 1.7E-11 75.2 8.5 26 18-43 255-280 (484)
361 KOG0460 Mitochondrial translat 98.5 2.2E-06 4.8E-11 68.2 10.2 120 16-151 51-184 (449)
362 TIGR00959 ffh signal recogniti 98.4 6.9E-06 1.5E-10 68.8 12.5 71 68-150 182-252 (428)
363 PRK12727 flagellar biosynthesi 98.4 3.8E-06 8.2E-11 71.5 10.8 25 17-41 348-372 (559)
364 COG5257 GCD11 Translation init 98.4 3.6E-06 7.8E-11 66.5 9.5 120 17-151 8-154 (415)
365 PRK12723 flagellar biosynthesi 98.4 2.2E-06 4.8E-11 70.9 8.7 123 18-152 173-327 (388)
366 cd03112 CobW_like The function 98.3 5.3E-06 1.1E-10 60.4 9.4 22 21-42 2-23 (158)
367 PF03308 ArgK: ArgK protein; 98.3 5.6E-07 1.2E-11 69.4 4.4 25 17-41 27-51 (266)
368 cd03230 ABC_DR_subfamily_A Thi 98.3 9.2E-06 2E-10 60.0 10.8 29 18-46 25-53 (173)
369 KOG2485 Conserved ATP/GTP bind 98.3 2.3E-06 4.9E-11 67.3 7.5 69 18-87 142-214 (335)
370 cd03222 ABC_RNaseL_inhibitor T 98.3 1.8E-05 4E-10 58.5 12.0 30 17-46 23-52 (177)
371 KOG1487 GTP-binding protein DR 98.3 7.6E-07 1.6E-11 68.3 4.4 121 20-149 60-181 (358)
372 PRK06731 flhF flagellar biosyn 98.3 1E-05 2.2E-10 63.7 10.5 123 18-152 74-226 (270)
373 cd03246 ABCC_Protease_Secretio 98.3 6.2E-06 1.3E-10 60.9 8.7 30 18-47 27-56 (173)
374 COG0488 Uup ATPase components 98.3 7.1E-06 1.5E-10 70.5 10.0 43 4-48 16-58 (530)
375 COG1131 CcmA ABC-type multidru 98.3 3E-06 6.4E-11 67.9 6.9 71 6-81 20-91 (293)
376 COG0541 Ffh Signal recognition 98.2 0.00011 2.3E-09 60.8 14.8 72 68-151 182-253 (451)
377 cd03228 ABCC_MRP_Like The MRP 98.2 1.1E-05 2.3E-10 59.5 8.1 30 18-47 27-56 (171)
378 cd03216 ABC_Carb_Monos_I This 98.2 1.8E-05 3.9E-10 57.9 9.1 30 18-47 25-54 (163)
379 COG3839 MalK ABC-type sugar tr 98.2 8.9E-06 1.9E-10 65.7 7.9 30 19-48 29-58 (338)
380 PRK01889 GTPase RsgA; Reviewed 98.2 2E-06 4.4E-11 70.7 4.3 59 19-81 195-259 (356)
381 COG1116 TauB ABC-type nitrate/ 98.1 2.3E-06 4.9E-11 65.6 3.5 41 6-48 18-58 (248)
382 cd00066 G-alpha G protein alph 98.1 4E-05 8.7E-10 62.1 10.9 77 63-151 156-242 (317)
383 COG4152 ABC-type uncharacteriz 98.1 6.9E-07 1.5E-11 68.1 0.4 39 7-47 18-56 (300)
384 COG0552 FtsY Signal recognitio 98.1 1.2E-05 2.5E-10 64.2 7.2 125 16-150 136-297 (340)
385 KOG2484 GTPase [General functi 98.1 3.1E-06 6.7E-11 68.6 3.8 64 16-84 249-312 (435)
386 COG4559 ABC-type hemin transpo 98.1 3.9E-06 8.5E-11 62.8 4.0 44 2-47 12-55 (259)
387 cd03115 SRP The signal recogni 98.1 0.00031 6.8E-09 51.7 14.3 73 68-152 82-154 (173)
388 COG1120 FepC ABC-type cobalami 98.1 3.2E-06 6.9E-11 65.7 3.5 43 3-47 14-56 (258)
389 COG0488 Uup ATPase components 98.1 5.8E-05 1.2E-09 65.0 11.4 32 17-48 346-377 (530)
390 PF00004 AAA: ATPase family as 98.1 2.9E-05 6.4E-10 54.2 8.2 100 22-148 1-111 (132)
391 cd03213 ABCG_EPDR ABCG transpo 98.1 7.3E-05 1.6E-09 56.2 10.7 26 18-43 34-59 (194)
392 cd03215 ABC_Carb_Monos_II This 98.1 4.2E-05 9.1E-10 56.9 9.2 30 18-47 25-54 (182)
393 cd03114 ArgK-like The function 98.1 2.1E-05 4.6E-10 56.5 7.3 22 21-42 1-22 (148)
394 COG4988 CydD ABC-type transpor 98.0 5.6E-05 1.2E-09 64.4 10.6 40 7-48 337-376 (559)
395 COG3840 ThiQ ABC-type thiamine 98.0 4.9E-06 1.1E-10 60.9 3.6 32 17-48 23-54 (231)
396 cd03243 ABC_MutS_homologs The 98.0 0.00011 2.4E-09 55.6 11.0 24 19-42 29-52 (202)
397 COG1703 ArgK Putative periplas 98.0 6.4E-05 1.4E-09 59.2 9.6 25 16-40 48-72 (323)
398 TIGR02868 CydC thiol reductant 98.0 1.2E-05 2.6E-10 69.8 6.4 31 18-48 360-390 (529)
399 KOG0072 GTP-binding ADP-ribosy 98.0 1.6E-05 3.6E-10 55.5 5.7 115 18-151 17-133 (182)
400 cd00267 ABC_ATPase ABC (ATP-bi 98.0 5.8E-05 1.3E-09 54.7 8.9 27 18-44 24-50 (157)
401 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.0 0.00015 3.2E-09 51.9 10.8 29 17-45 24-52 (144)
402 KOG3887 Predicted small GTPase 98.0 2.3E-05 5E-10 59.7 6.6 126 17-152 25-150 (347)
403 cd03223 ABCD_peroxisomal_ALDP 98.0 7.1E-05 1.5E-09 54.9 9.2 30 18-47 26-55 (166)
404 cd03280 ABC_MutS2 MutS2 homolo 98.0 0.00031 6.7E-09 53.1 12.8 21 20-40 29-49 (200)
405 cd03232 ABC_PDR_domain2 The pl 98.0 0.00017 3.8E-09 54.1 11.2 26 18-43 32-57 (192)
406 COG1126 GlnQ ABC-type polar am 98.0 9.1E-06 2E-10 61.0 3.8 42 5-48 16-57 (240)
407 cd03217 ABC_FeS_Assembly ABC-t 98.0 8.6E-05 1.9E-09 56.1 9.3 27 17-43 24-50 (200)
408 cd03247 ABCC_cytochrome_bd The 97.9 4.8E-05 1E-09 56.4 7.5 30 18-47 27-56 (178)
409 KOG2423 Nucleolar GTPase [Gene 97.9 6.3E-06 1.4E-10 66.9 2.9 65 15-84 303-367 (572)
410 COG0411 LivG ABC-type branched 97.9 2.2E-06 4.7E-11 65.3 0.3 31 18-48 29-59 (250)
411 PF00005 ABC_tran: ABC transpo 97.9 9.2E-06 2E-10 57.4 3.5 30 18-47 10-39 (137)
412 COG4525 TauB ABC-type taurine 97.9 2.6E-05 5.6E-10 57.8 5.4 29 19-47 31-59 (259)
413 COG1136 SalX ABC-type antimicr 97.9 1.3E-05 2.8E-10 61.1 4.0 31 18-48 30-60 (226)
414 cd03281 ABC_MSH5_euk MutS5 hom 97.9 0.00042 9.2E-09 52.9 12.0 36 4-41 16-51 (213)
415 cd03225 ABC_cobalt_CbiO_domain 97.9 1.5E-05 3.3E-10 60.7 4.1 30 18-47 26-55 (211)
416 COG1134 TagH ABC-type polysacc 97.9 1.7E-05 3.7E-10 60.6 4.2 43 6-48 37-82 (249)
417 COG4555 NatA ABC-type Na+ tran 97.9 1.9E-06 4.1E-11 64.0 -0.9 31 18-48 27-57 (245)
418 TIGR01166 cbiO cobalt transpor 97.9 1.5E-05 3.3E-10 59.7 4.0 29 19-47 18-46 (190)
419 cd03261 ABC_Org_Solvent_Resist 97.9 1.5E-05 3.3E-10 61.8 4.0 30 18-47 25-54 (235)
420 COG1121 ZnuC ABC-type Mn/Zn tr 97.9 1.5E-05 3.3E-10 61.7 3.9 41 6-48 19-59 (254)
421 COG1124 DppF ABC-type dipeptid 97.9 3.1E-05 6.8E-10 59.1 5.3 65 17-82 31-97 (252)
422 PRK15177 Vi polysaccharide exp 97.9 1.7E-05 3.7E-10 60.6 4.0 31 18-48 12-42 (213)
423 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.8 1.8E-05 3.8E-10 60.7 4.0 30 18-47 29-58 (218)
424 cd03226 ABC_cobalt_CbiO_domain 97.8 1.8E-05 3.9E-10 60.0 3.9 30 18-47 25-54 (205)
425 TIGR02673 FtsE cell division A 97.8 2E-05 4.3E-10 60.2 4.0 29 18-46 27-55 (214)
426 TIGR00960 3a0501s02 Type II (G 97.8 2E-05 4.3E-10 60.3 4.0 30 18-47 28-57 (216)
427 cd03259 ABC_Carb_Solutes_like 97.8 2E-05 4.4E-10 60.1 4.0 30 18-47 25-54 (213)
428 PF02263 GBP: Guanylate-bindin 97.8 0.00015 3.2E-09 57.2 8.9 67 16-82 18-87 (260)
429 cd03265 ABC_DrrA DrrA is the A 97.8 2.1E-05 4.6E-10 60.3 4.0 30 18-47 25-54 (220)
430 smart00010 small_GTPase Small 97.8 0.00011 2.3E-09 50.7 7.2 23 21-43 2-24 (124)
431 TIGR03608 L_ocin_972_ABC putat 97.8 2.2E-05 4.7E-10 59.6 3.9 30 18-47 23-52 (206)
432 COG3640 CooC CO dehydrogenase 97.8 7.2E-05 1.6E-09 56.9 6.5 45 102-150 154-198 (255)
433 cd03293 ABC_NrtD_SsuB_transpor 97.8 2.1E-05 4.5E-10 60.4 3.8 30 18-47 29-58 (220)
434 PRK11174 cysteine/glutathione 97.8 0.00011 2.5E-09 64.6 8.9 30 18-48 375-404 (588)
435 TIGR02211 LolD_lipo_ex lipopro 97.8 2.3E-05 5.1E-10 60.1 4.0 30 18-47 30-59 (221)
436 cd03262 ABC_HisP_GlnQ_permease 97.8 2.4E-05 5.2E-10 59.7 4.1 30 18-47 25-54 (213)
437 PRK13541 cytochrome c biogenes 97.8 2.5E-05 5.4E-10 58.8 4.0 30 18-47 25-54 (195)
438 cd03292 ABC_FtsE_transporter F 97.8 2.4E-05 5.2E-10 59.7 4.0 30 18-47 26-55 (214)
439 KOG0446 Vacuolar sorting prote 97.8 1.6E-05 3.6E-10 69.9 3.4 132 17-151 27-213 (657)
440 cd03269 ABC_putative_ATPase Th 97.8 2.6E-05 5.6E-10 59.4 4.0 29 18-46 25-53 (210)
441 PRK11248 tauB taurine transpor 97.8 2.5E-05 5.5E-10 61.4 4.1 31 18-48 26-56 (255)
442 KOG1533 Predicted GTPase [Gene 97.8 0.00022 4.7E-09 54.3 8.7 77 68-151 96-177 (290)
443 cd03235 ABC_Metallic_Cations A 97.8 2.5E-05 5.5E-10 59.6 3.9 30 18-47 24-53 (213)
444 KOG0780 Signal recognition par 97.8 0.00016 3.6E-09 58.7 8.6 123 16-150 98-253 (483)
445 cd03263 ABC_subfamily_A The AB 97.8 2.6E-05 5.7E-10 59.8 4.0 30 18-47 27-56 (220)
446 PF13555 AAA_29: P-loop contai 97.8 2.7E-05 5.9E-10 46.8 3.2 22 20-41 24-45 (62)
447 cd03218 ABC_YhbG The ABC trans 97.8 2.7E-05 5.8E-10 60.3 4.1 30 18-47 25-54 (232)
448 PRK13540 cytochrome c biogenes 97.8 2.8E-05 6E-10 58.8 4.0 31 18-48 26-56 (200)
449 cd03224 ABC_TM1139_LivF_branch 97.8 2.8E-05 6E-10 59.7 4.1 30 18-47 25-54 (222)
450 cd03258 ABC_MetN_methionine_tr 97.8 2.7E-05 5.9E-10 60.3 4.1 30 18-47 30-59 (233)
451 cd03111 CpaE_like This protein 97.8 0.00015 3.3E-09 49.0 7.3 99 26-146 7-106 (106)
452 cd03257 ABC_NikE_OppD_transpor 97.8 2.7E-05 5.8E-10 60.0 4.0 30 18-47 30-59 (228)
453 TIGR01189 ccmA heme ABC export 97.8 2.9E-05 6.3E-10 58.6 4.1 30 18-47 25-54 (198)
454 TIGR02315 ABC_phnC phosphonate 97.8 2.7E-05 5.9E-10 60.7 4.0 30 18-47 27-56 (243)
455 TIGR01188 drrA daunorubicin re 97.8 2.7E-05 5.9E-10 62.7 4.0 31 18-48 18-48 (302)
456 TIGR03864 PQQ_ABC_ATP ABC tran 97.8 2.9E-05 6.2E-10 60.3 4.0 31 18-48 26-56 (236)
457 cd03264 ABC_drug_resistance_li 97.8 2.7E-05 5.7E-10 59.4 3.7 27 21-47 27-53 (211)
458 PRK10790 putative multidrug tr 97.8 0.0001 2.3E-09 64.9 8.0 31 18-48 366-396 (592)
459 cd03301 ABC_MalK_N The N-termi 97.8 3.1E-05 6.7E-10 59.1 4.0 30 18-47 25-54 (213)
460 cd03236 ABC_RNaseL_inhibitor_d 97.8 3E-05 6.6E-10 60.9 4.1 33 16-48 23-55 (255)
461 cd03231 ABC_CcmA_heme_exporter 97.8 3.2E-05 6.9E-10 58.5 4.0 30 18-47 25-54 (201)
462 PRK11629 lolD lipoprotein tran 97.8 3E-05 6.6E-10 60.0 4.0 29 18-46 34-62 (233)
463 PRK10584 putative ABC transpor 97.8 3.1E-05 6.7E-10 59.7 4.0 30 18-47 35-64 (228)
464 PRK13539 cytochrome c biogenes 97.8 3.3E-05 7.1E-10 58.7 4.1 30 18-47 27-56 (207)
465 cd03237 ABC_RNaseL_inhibitor_d 97.7 3.2E-05 6.9E-10 60.4 4.1 32 17-48 23-54 (246)
466 cd03296 ABC_CysA_sulfate_impor 97.7 3.1E-05 6.8E-10 60.2 4.0 30 18-47 27-56 (239)
467 cd03238 ABC_UvrA The excision 97.7 2.7E-05 6E-10 57.6 3.4 24 18-41 20-43 (176)
468 PRK10908 cell division protein 97.7 3.3E-05 7.2E-10 59.3 4.0 30 18-47 27-56 (222)
469 TIGR03410 urea_trans_UrtE urea 97.7 3.3E-05 7.2E-10 59.6 4.0 30 18-47 25-54 (230)
470 PRK13538 cytochrome c biogenes 97.7 3.5E-05 7.5E-10 58.5 4.1 30 18-47 26-55 (204)
471 cd03219 ABC_Mj1267_LivG_branch 97.7 3.2E-05 6.9E-10 60.0 3.9 30 18-47 25-54 (236)
472 KOG0066 eIF2-interacting prote 97.7 0.00047 1E-08 57.3 10.7 30 19-48 613-642 (807)
473 cd03256 ABC_PhnC_transporter A 97.7 3.4E-05 7.3E-10 60.0 4.0 30 18-47 26-55 (241)
474 cd03214 ABC_Iron-Siderophores_ 97.7 3.8E-05 8.3E-10 57.1 4.1 28 18-45 24-51 (180)
475 PRK10895 lipopolysaccharide AB 97.7 3.6E-05 7.7E-10 59.9 4.0 30 18-47 28-57 (241)
476 PRK10247 putative ABC transpor 97.7 3.6E-05 7.7E-10 59.3 4.0 30 18-47 32-61 (225)
477 PRK11247 ssuB aliphatic sulfon 97.7 3.5E-05 7.6E-10 60.6 4.0 30 18-47 37-66 (257)
478 TIGR01184 ntrCD nitrate transp 97.7 3.7E-05 8E-10 59.5 4.0 31 18-48 10-40 (230)
479 cd03260 ABC_PstB_phosphate_tra 97.7 3.2E-05 6.9E-10 59.6 3.7 26 18-43 25-50 (227)
480 PRK11124 artP arginine transpo 97.7 3.6E-05 7.9E-10 59.9 4.0 30 18-47 27-56 (242)
481 PRK13536 nodulation factor exp 97.7 3.4E-05 7.4E-10 63.1 4.0 31 18-48 66-96 (340)
482 COG0410 LivF ABC-type branched 97.7 3.9E-05 8.5E-10 58.2 4.0 29 18-46 28-56 (237)
483 cd03298 ABC_ThiQ_thiamine_tran 97.7 3.8E-05 8.2E-10 58.5 4.0 31 17-47 22-52 (211)
484 cd03266 ABC_NatA_sodium_export 97.7 3.9E-05 8.4E-10 58.8 4.0 30 18-47 30-59 (218)
485 cd03268 ABC_BcrA_bacitracin_re 97.7 3.9E-05 8.4E-10 58.3 4.0 30 18-47 25-54 (208)
486 PRK15056 manganese/iron transp 97.7 3.7E-05 8E-10 61.0 4.0 30 18-47 32-61 (272)
487 PRK13638 cbiO cobalt transport 97.7 3.8E-05 8.3E-10 60.9 4.0 31 18-48 26-56 (271)
488 TIGR01288 nodI ATP-binding ABC 97.7 3.7E-05 8.1E-10 62.0 4.0 30 18-47 29-58 (303)
489 cd03254 ABCC_Glucan_exporter_l 97.7 4E-05 8.7E-10 59.1 4.0 31 18-48 28-58 (229)
490 COG0194 Gmk Guanylate kinase [ 97.7 2.5E-05 5.3E-10 57.4 2.6 26 18-43 3-28 (191)
491 COG4586 ABC-type uncharacteriz 97.7 3.1E-05 6.6E-10 60.2 3.2 30 19-48 50-79 (325)
492 PRK13543 cytochrome c biogenes 97.7 4.2E-05 9.1E-10 58.5 4.0 30 18-47 36-65 (214)
493 cd03295 ABC_OpuCA_Osmoprotecti 97.7 4.2E-05 9.1E-10 59.6 4.1 30 18-47 26-55 (242)
494 PRK09544 znuC high-affinity zi 97.7 4.1E-05 8.9E-10 60.0 4.0 30 18-47 29-58 (251)
495 PRK14250 phosphate ABC transpo 97.7 4.3E-05 9.4E-10 59.5 4.0 30 18-47 28-57 (241)
496 cd03251 ABCC_MsbA MsbA is an e 97.7 4.3E-05 9.4E-10 59.2 4.0 31 18-48 27-57 (234)
497 cd03294 ABC_Pro_Gly_Bertaine T 97.7 4.3E-05 9.4E-10 60.5 4.0 30 18-47 49-78 (269)
498 PRK11264 putative amino-acid A 97.7 4.4E-05 9.4E-10 59.8 4.0 29 18-46 28-56 (250)
499 KOG1534 Putative transcription 97.7 0.00014 3.1E-09 54.4 6.3 91 68-163 97-191 (273)
500 PRK13537 nodulation ABC transp 97.7 4.1E-05 8.9E-10 61.8 3.9 31 18-48 32-62 (306)
No 1
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.98 E-value=3.1e-31 Score=202.22 Aligned_cols=179 Identities=41% Similarity=0.682 Sum_probs=142.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
++|+|+|++|+||||++|+|+|...+..+....+.|..+......+ .+..+.||||||+.+.....+++.+++.+++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 5899999999999999999999999888777778888898888877 999999999999999887778889999999998
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhh---------
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK--------- 170 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~--------- 170 (221)
+.+++|++|+|++++ +++..+...++.+.+.||..+|.+++||+|++|.+. +..+++|+++..+..|+
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~--~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELE--DDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGT--TTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccc--cccHHHHHhccCchhHhHHhhhcCCE
Confidence 999999999999999 999999999999999999999999999999999988 55577777743333333
Q ss_pred ----------------hhHHHHHhHHHHHHhcCC--CCHHHHHHHHHHHH
Q 027618 171 ----------------KGATKLRDQQFEVDSLKG--YSKREISELKEQMH 202 (221)
Q Consensus 171 ----------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 202 (221)
.-...+..+.+++.++++ |+++++++.+++..
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~~~ 206 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEERKE 206 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHCCH
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 123444667777777776 99999999887654
No 2
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.96 E-value=4e-28 Score=183.26 Aligned_cols=140 Identities=56% Similarity=0.894 Sum_probs=124.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
++|+++|++|+|||||+|+|+|...+.......+.|..+......+ .+..+.||||||+.++....+.+..++..++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 4799999999999999999999988766666677888888888878 889999999999998876667778888888888
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcc
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR 163 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~ 163 (221)
+.+++|++++|+++. +++..+...++.+++.||...+.++++|+|++|.+. ...+++|+..
T Consensus 80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~--~~~~~~~~~~ 140 (196)
T cd01852 80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE--GGTLEDYLEN 140 (196)
T ss_pred cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC--CCcHHHHHHh
Confidence 889999999999999 499999999999999999988899999999999998 5678888874
No 3
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.91 E-value=6.5e-23 Score=161.30 Aligned_cols=156 Identities=24% Similarity=0.295 Sum_probs=113.6
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 027618 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE 92 (221)
Q Consensus 13 ~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~ 92 (221)
+.......+|+++|.+|+||||++|+|+|........ ..+.+..+....... .+..+.||||||+.+....++... +
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~-f~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~~~e~~~-~ 108 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSA-FQSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGYINDQAV-N 108 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeEEEEEEEE-CCeEEEEEECCCCCchHHHHHHHH-H
Confidence 3444567899999999999999999999987643322 122233333333445 788999999999997533222222 2
Q ss_pred HHHHHHhhcCCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhh
Q 027618 93 IVKCIGMAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKK 171 (221)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~ 171 (221)
..+++. ...++|++|||.+.+ .+++..+...++.+++.||..+|.+++|++||+|...+++.++++|+.+ +.+.++.
T Consensus 109 ~ik~~l-~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~ 186 (313)
T TIGR00991 109 IIKRFL-LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLR 186 (313)
T ss_pred HHHHHh-hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHH
Confidence 222221 224789999997664 3788899999999999999999999999999999886668899999984 6666664
Q ss_pred hH
Q 027618 172 GA 173 (221)
Q Consensus 172 ~~ 173 (221)
..
T Consensus 187 ~i 188 (313)
T TIGR00991 187 VI 188 (313)
T ss_pred HH
Confidence 33
No 4
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.88 E-value=6.3e-21 Score=161.43 Aligned_cols=153 Identities=21% Similarity=0.291 Sum_probs=113.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
-..+|+|+|++|+||||++|+|+|...+....... .|+.+......+ .+..+.||||||+.++.... ....++.+++
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~-~TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~dq-~~neeILk~I 193 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGM-GTTSVQEIEGLV-QGVKIRVIDTPGLKSSASDQ-SKNEKILSSV 193 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCC-CceEEEEEEEEE-CCceEEEEECCCCCccccch-HHHHHHHHHH
Confidence 34789999999999999999999998766553333 344444444444 78899999999999864332 2344555555
Q ss_pred Hhhc--CCCcEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCh-----hhHHHHhcccCCchh
Q 027618 98 GMAK--DGIHAVLVVFSVRSR-FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND-----ETLEDYLGRECPKPL 169 (221)
Q Consensus 98 ~~~~--~~~~~il~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~-----~~~~~~l~~~~~~~l 169 (221)
..++ .++|++|||+.++.. ...++..+++.+++.||..+|.++|||+|++|...+++ .++++|+.+ +++.+
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~L 272 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIV 272 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHH
Confidence 4332 368999999988622 33467899999999999999999999999999997543 689999984 66666
Q ss_pred hhhHH
Q 027618 170 KKGAT 174 (221)
Q Consensus 170 ~~~~~ 174 (221)
+....
T Consensus 273 q~~Ir 277 (763)
T TIGR00993 273 QQAIG 277 (763)
T ss_pred HHHHH
Confidence 64433
No 5
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.86 E-value=1.7e-20 Score=145.65 Aligned_cols=136 Identities=28% Similarity=0.337 Sum_probs=102.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
.....+|+|+|++|+|||||+|+|+|....... ...+.|..+......+ .+..+.||||||+.+...+. ...+.+..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~-~~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~-~~~~~~~~ 104 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATS-AFQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQ-RVNRKILS 104 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhH-HHHHHHHH
Confidence 455699999999999999999999998765443 2334566666666666 78899999999999763221 12223333
Q ss_pred HHHhhc--CCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCh
Q 027618 96 CIGMAK--DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND 154 (221)
Q Consensus 96 ~~~~~~--~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 154 (221)
.+..++ ..+|+++||..++ .+++..+...++.+++.||..+|.++++|+||+|...+++
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 332222 3578999998776 3678888999999999999999999999999999986543
No 6
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=2.7e-20 Score=151.28 Aligned_cols=156 Identities=24% Similarity=0.224 Sum_probs=128.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
++|+++|.|++|||||+|+|+|....... ...|.|+...+....| .+..+.+|||+|+... ..+.+.+++......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~-D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~--~~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVS-DTPGVTRDRIYGDAEW-LGREFILIDTGGLDDG--DEDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEee-cCCCCccCCccceeEE-cCceEEEEECCCCCcC--CchHHHHHHHHHHHH
Confidence 68999999999999999999999876554 5778999999999999 8888999999999862 345678888888888
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHHHhH
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQ 179 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 179 (221)
++..+|++|||+|..+.+++.|....+.|++. .+|+++|+||+|.... ....-+|.+-.-...+..|+.-.+.+
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~-----~kpviLvvNK~D~~~~-e~~~~efyslG~g~~~~ISA~Hg~Gi 153 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRRS-----KKPVILVVNKIDNLKA-EELAYEFYSLGFGEPVPISAEHGRGI 153 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEEcccCchh-hhhHHHHHhcCCCCceEeehhhccCH
Confidence 88999999999999999999999999999853 3489999999998742 33455566555556666777777777
Q ss_pred HHHHHh
Q 027618 180 QFEVDS 185 (221)
Q Consensus 180 ~~~~~~ 185 (221)
.++.+.
T Consensus 154 ~dLld~ 159 (444)
T COG1160 154 GDLLDA 159 (444)
T ss_pred HHHHHH
Confidence 766665
No 7
>COG1159 Era GTPase [General function prediction only]
Probab=99.85 E-value=6.9e-20 Score=141.54 Aligned_cols=124 Identities=22% Similarity=0.306 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
..|+++|+|++|||||+|+|+|.+.... ++.+.|+......+......++.++||||++.+ ...+.+.+.+++..
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIv--S~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a~~ 81 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIV--SPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAARS 81 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEee--cCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHHHH
Confidence 5789999999999999999999998544 344445544444444437889999999999975 45567888888999
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (221)
++..+|+++||+++++.++..+...++.+++. ..|+++++||.|+..++
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~-----~~pvil~iNKID~~~~~ 130 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGDEFILEQLKKT-----KTPVILVVNKIDKVKPK 130 (298)
T ss_pred HhccCcEEEEEEeccccCCccHHHHHHHHhhc-----CCCeEEEEEccccCCcH
Confidence 99999999999999988999999999998872 23899999999998743
No 8
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.81 E-value=2e-18 Score=119.48 Aligned_cols=116 Identities=22% Similarity=0.324 Sum_probs=80.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
+|+++|.+|+|||||+|+|++......+ ...+.|..+......+ .+..+.++||||+.+....... .+.+...+...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~-~~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~-~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVS-NIPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDND-GKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEES-SSTTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHH-HHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccc-ccccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHH-HHHHHHHHHHH
Confidence 6899999999999999999997543333 2345666665556666 8888899999999874322221 12333344444
Q ss_pred cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 027618 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG 146 (221)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk 146 (221)
..+|++++|+++....+..+...+++++ ...|+++|+||
T Consensus 78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASNPITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTSHSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred -HHCCEEEEEEECCCCCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 7889999999987544445566666663 23479999997
No 9
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=1.8e-17 Score=121.67 Aligned_cols=125 Identities=20% Similarity=0.268 Sum_probs=94.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCc---hHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS---EFVGKEI 93 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~---~~~~~~~ 93 (221)
....-|+++|.+++|||||||+|++.+.......++|.|.....+.+. ..+.++|.||++=..... +.+...+
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~----~~~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD----DELRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec----CcEEEEeCCCcccccCCHHHHHHHHHHH
Confidence 355889999999999999999999987443444677888888876653 237899999987433332 2233444
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..++... ....++++++|+...+...|.+.++++.+. + .|++|++||+|++.
T Consensus 98 ~~YL~~R-~~L~~vvlliD~r~~~~~~D~em~~~l~~~-~----i~~~vv~tK~DKi~ 149 (200)
T COG0218 98 EEYLEKR-ANLKGVVLLIDARHPPKDLDREMIEFLLEL-G----IPVIVVLTKADKLK 149 (200)
T ss_pred HHHHhhc-hhheEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCeEEEEEccccCC
Confidence 4444432 336789999999988999999999999885 2 37999999999997
No 10
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.78 E-value=5.6e-18 Score=121.71 Aligned_cols=120 Identities=24% Similarity=0.292 Sum_probs=84.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
.+|+++|.+++|||||+|+|+|.....+ ..++.|.......+.+ .+..+.++|+||+++...... .+++...+.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~--n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~--ee~v~~~~l- 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVG--NWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSE--EERVARDYL- 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEE--ESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSH--HHHHHHHHH-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceec--CCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCc--HHHHHHHHH-
Confidence 3799999999999999999999995433 4577888888888888 889999999999987544322 223322222
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
....+|++++|+|++ .+. .+.....++.+. | .|+++++||+|....
T Consensus 75 ~~~~~D~ii~VvDa~-~l~-r~l~l~~ql~e~-g----~P~vvvlN~~D~a~~ 120 (156)
T PF02421_consen 75 LSEKPDLIIVVVDAT-NLE-RNLYLTLQLLEL-G----IPVVVVLNKMDEAER 120 (156)
T ss_dssp HHTSSSEEEEEEEGG-GHH-HHHHHHHHHHHT-T----SSEEEEEETHHHHHH
T ss_pred hhcCCCEEEEECCCC-CHH-HHHHHHHHHHHc-C----CCEEEEEeCHHHHHH
Confidence 246789999999998 443 234455555554 3 479999999998753
No 11
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.77 E-value=1.7e-17 Score=131.24 Aligned_cols=120 Identities=21% Similarity=0.213 Sum_probs=82.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
+|+++|++|||||||+|+|+|........ ..++|..... ......+.++.++||||+.+.. ....+.+.+.+..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~-~~~TTr~~i~-~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSP-KAQTTRNRIS-GIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCC-CCCcccCcEE-EEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence 68999999999999999999987643321 2233443332 3323256679999999998642 22344455556666
Q ss_pred cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+..+|++++|+|+++..+.. ..+++.+... ..|+++|+||+|+..
T Consensus 77 l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~-----~~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGDG-EFVLTKLQNL-----KRPVVLTRNKLDNKF 121 (270)
T ss_pred HhhCCEEEEEEECCCCCchH-HHHHHHHHhc-----CCCEEEEEECeeCCC
Confidence 78889999999998655443 4445555432 347999999999874
No 12
>PRK15494 era GTPase Era; Provisional
Probab=99.77 E-value=2.2e-17 Score=134.17 Aligned_cols=156 Identities=19% Similarity=0.234 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
.+|+++|.+|+|||||+|+|++........ ..++|.......+.+ .+.++.+|||||+.+... .+...+.+....
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~-k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~~---~l~~~~~r~~~~ 127 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTP-KVQTTRSIITGIITL-KDTQVILYDTPGIFEPKG---SLEKAMVRCAWS 127 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccC-CCCCccCcEEEEEEe-CCeEEEEEECCCcCCCcc---cHHHHHHHHHHH
Confidence 489999999999999999999987643221 223444444444555 677899999999975322 234445555555
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccC--CchhhhhHHHHH
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGREC--PKPLKKGATKLR 177 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~--~~~l~~~~~~~~ 177 (221)
++..+|++++|+|..+.+...+..+++.+++. + .|.++|+||+|+.......+.+++.... ...+..|+....
T Consensus 128 ~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~----~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~ 202 (339)
T PRK15494 128 SLHSADLVLLIIDSLKSFDDITHNILDKLRSL-N----IVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGK 202 (339)
T ss_pred HhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCcc
Confidence 67788999999998877777777777766553 1 2577899999986422234455554322 233445555444
Q ss_pred hHHHHHHh
Q 027618 178 DQQFEVDS 185 (221)
Q Consensus 178 ~~~~~~~~ 185 (221)
++.+.++.
T Consensus 203 gv~eL~~~ 210 (339)
T PRK15494 203 NIDGLLEY 210 (339)
T ss_pred CHHHHHHH
Confidence 44444443
No 13
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.77 E-value=1.9e-17 Score=121.70 Aligned_cols=157 Identities=22% Similarity=0.161 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchH-HHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF-VGKEIVKCIG 98 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~-~~~~~~~~~~ 98 (221)
++|+++|++|+|||||+|++++...... .....|.........+ .+..+.+|||||+.+....... +... .+.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~---~~~ 74 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA--PYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQ---AIT 74 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccC--CCCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHH---HHH
Confidence 4789999999999999999998765321 1223455555555555 6678999999998653222111 1111 111
Q ss_pred hhcCCCcEEEEEEeCCCCCC---HHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChh-hHHHHhcccCCchhhhhHH
Q 027618 99 MAKDGIHAVLVVFSVRSRFS---QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDE-TLEDYLGRECPKPLKKGAT 174 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~-~~~~~l~~~~~~~l~~~~~ 174 (221)
.....+|++++|+|+++..+ .....+++.+++.+. ..|+++|+||+|....... ...++........+..++.
T Consensus 75 ~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~ 151 (168)
T cd01897 75 ALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTL 151 (168)
T ss_pred HHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEec
Confidence 11123589999999985433 222456666655432 3489999999998752211 1223333222234445666
Q ss_pred HHHhHHHHHHh
Q 027618 175 KLRDQQFEVDS 185 (221)
Q Consensus 175 ~~~~~~~~~~~ 185 (221)
...++.+.++.
T Consensus 152 ~~~gi~~l~~~ 162 (168)
T cd01897 152 TEEGVDEVKNK 162 (168)
T ss_pred ccCCHHHHHHH
Confidence 55555555543
No 14
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=2e-17 Score=119.97 Aligned_cols=119 Identities=25% Similarity=0.287 Sum_probs=85.7
Q ss_pred EEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcC
Q 027618 23 VLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKD 102 (221)
Q Consensus 23 ~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (221)
+++|.+|+|||||+|+|++....... ...+.|.........+ .+..+.++||||+.+... ...+.+.........
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVE-DTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeec-CCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence 47899999999999999987643222 2334455555555555 678899999999986432 334445555555567
Q ss_pred CCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 103 GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 103 ~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.+|++++|+++.+..+..+....+.+++. ..|+++|+||+|+..
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-----~~piiiv~nK~D~~~ 119 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRKS-----KKPVILVVNKVDNIK 119 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHhc-----CCCEEEEEECcccCC
Confidence 78999999999877766666666666543 248999999999876
No 15
>PRK00089 era GTPase Era; Reviewed
Probab=99.76 E-value=4.2e-17 Score=130.53 Aligned_cols=123 Identities=21% Similarity=0.296 Sum_probs=87.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
...|+++|++|||||||+|+|+|....... ..+.|+...........+.++.++||||+.+.. ....+.+.....
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs--~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~ 79 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVS--PKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAW 79 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecC--CCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHH
Confidence 367999999999999999999998764332 222233322222222145689999999998643 234445555666
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.++..+|++++|+|+++.++..+...++.+... ..|+++|+||+|+..
T Consensus 80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~~ 127 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV-----KTPVILVLNKIDLVK 127 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc-----CCCEEEEEECCcCCC
Confidence 677889999999999976777776666666531 248999999999984
No 16
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=3e-17 Score=128.19 Aligned_cols=130 Identities=22% Similarity=0.215 Sum_probs=94.6
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 027618 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE 92 (221)
Q Consensus 13 ~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~ 92 (221)
++-....++|++.|.+++|||||+++|++.+. .-.+.+.+|.....++..+ ...++++|||||+.|.+.++. ..-
T Consensus 162 P~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp--EvA~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl~Er--N~I 236 (346)
T COG1084 162 PAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP--EVAPYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPLEER--NEI 236 (346)
T ss_pred CCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC--ccCCCCccccceeEeeeec-CCceEEEecCCcccCCChHHh--cHH
Confidence 44455669999999999999999999999875 3334566788888888887 888999999999998554332 222
Q ss_pred HHHHHHhhcCCCcEEEEEEeCCC--CCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 93 IVKCIGMAKDGIHAVLVVFSVRS--RFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~--~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
-.+++.....-.++|+|++|.++ .++.+. ...++.++..|. .|+++|+||.|...
T Consensus 237 E~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~ 294 (346)
T COG1084 237 ERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIAD 294 (346)
T ss_pred HHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccc
Confidence 22233222233478999999874 455555 466666777655 47999999999875
No 17
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=3.8e-17 Score=138.58 Aligned_cols=158 Identities=22% Similarity=0.174 Sum_probs=109.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
...++|+++|.+|||||||+|+|++....... ...+.|.........+ .+..+.+|||||+... ...+...+...
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~---~~~~~~~~~~~ 110 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPD---AKGLQASVAEQ 110 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCc---chhHHHHHHHH
Confidence 44578999999999999999999987643332 3445666666666777 7888999999998631 22344556666
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHH
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKL 176 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 176 (221)
+..++..+|++|+|+|++++.+..+..+.+.++.. ..|+++|+||+|..... ....++........+..|+...
T Consensus 111 ~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~~~~-~~~~~~~~~g~~~~~~iSA~~g 184 (472)
T PRK03003 111 AEVAMRTADAVLFVVDATVGATATDEAVARVLRRS-----GKPVILAANKVDDERGE-ADAAALWSLGLGEPHPVSALHG 184 (472)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCccc-hhhHHHHhcCCCCeEEEEcCCC
Confidence 66677888999999999988888787777777642 34899999999976421 1222332222233345666655
Q ss_pred HhHHHHHHh
Q 027618 177 RDQQFEVDS 185 (221)
Q Consensus 177 ~~~~~~~~~ 185 (221)
.++.++++.
T Consensus 185 ~gi~eL~~~ 193 (472)
T PRK03003 185 RGVGDLLDA 193 (472)
T ss_pred CCcHHHHHH
Confidence 566555554
No 18
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.75 E-value=4.5e-17 Score=137.02 Aligned_cols=153 Identities=22% Similarity=0.249 Sum_probs=108.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
+|+++|++|+|||||+|+|++....... ...+.|.........+ .+..+.+|||||+... ...+...+...+..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~-~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVS-DTPGVTRDRKYGDAEW-GGREFILIDTGGIEED---DDGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceec-CCCCcccCceEEEEEE-CCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence 4899999999999999999997643222 3456777777777888 8889999999998642 233556666666677
Q ss_pred cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHHHhHH
Q 027618 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQQ 180 (221)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~ 180 (221)
+..+|++++|+|+.++++..+..+.+++++. ..|+++|+||+|...... ...++.+-.....+..|+....++.
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~~~~-~~~~~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-----GKPVILVANKIDGKKEDA-VAAEFYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-----CCCEEEEEECccCCcccc-cHHHHHhcCCCCeEEEeCCcCCChH
Confidence 7888999999999988999988888888763 347999999999875322 2233333223334444554444444
Q ss_pred HHHH
Q 027618 181 FEVD 184 (221)
Q Consensus 181 ~~~~ 184 (221)
+.++
T Consensus 150 ~ll~ 153 (429)
T TIGR03594 150 DLLD 153 (429)
T ss_pred HHHH
Confidence 4444
No 19
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.75 E-value=3.8e-17 Score=120.31 Aligned_cols=157 Identities=18% Similarity=0.151 Sum_probs=90.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc-eEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ-VVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
.|+++|++|||||||+|+|++.... .+ ...+.|..+......+ .+. .+.++||||+.+.......+...+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~-v~-~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~---- 74 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-IA-DYPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFLR---- 74 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc-cc-CCCccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHHH----
Confidence 4899999999999999999986542 11 1223344555555555 444 89999999986432221122222222
Q ss_pred hcCCCcEEEEEEeCCCC-CCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh--hhHHHHhccc-CCchhhhhHH
Q 027618 100 AKDGIHAVLVVFSVRSR-FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND--ETLEDYLGRE-CPKPLKKGAT 174 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~--~~~~~~l~~~-~~~~l~~~~~ 174 (221)
.+..+|++++|+|+++. -+... ..+.+.+.+........|+++|+||+|+..... ..+..+..+. ....+..++.
T Consensus 75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 154 (170)
T cd01898 75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISAL 154 (170)
T ss_pred HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecC
Confidence 23456999999999854 22222 456666665432222458999999999865221 1223333321 2233444554
Q ss_pred HHHhHHHHHH
Q 027618 175 KLRDQQFEVD 184 (221)
Q Consensus 175 ~~~~~~~~~~ 184 (221)
....+.+.++
T Consensus 155 ~~~gi~~l~~ 164 (170)
T cd01898 155 TGEGLDELLR 164 (170)
T ss_pred CCCCHHHHHH
Confidence 4444444443
No 20
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.75 E-value=7.3e-17 Score=122.54 Aligned_cols=158 Identities=25% Similarity=0.227 Sum_probs=95.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
+..+|+++|++|||||||+|++++....... ....|..+......+.....+.+|||||+.+.. .......+...+
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~~~~~~~~~~~~ 115 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAED--QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDL--PHQLVEAFRSTL 115 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCC--ccceeccceeEEEEecCCceEEEeCCCccccCC--CHHHHHHHHHHH
Confidence 3479999999999999999999997643222 122333444444555233489999999986522 122222233222
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHH
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKL 176 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 176 (221)
.....+|++++|+|++++..... ..+.+.+... +.. ..|+++|+||+|+.. ...............+..|+...
T Consensus 116 -~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~~-~~~viiV~NK~Dl~~--~~~~~~~~~~~~~~~~~~Sa~~~ 190 (204)
T cd01878 116 -EEVAEADLLLHVVDASDPDYEEQIETVEKVLKEL-GAE-DIPMILVLNKIDLLD--DEELEERLEAGRPDAVFISAKTG 190 (204)
T ss_pred -HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc-CcC-CCCEEEEEEccccCC--hHHHHHHhhcCCCceEEEEcCCC
Confidence 33567899999999986655544 3444555443 221 248999999999876 33333333323334455555555
Q ss_pred HhHHHHHH
Q 027618 177 RDQQFEVD 184 (221)
Q Consensus 177 ~~~~~~~~ 184 (221)
.++.+.++
T Consensus 191 ~gi~~l~~ 198 (204)
T cd01878 191 EGLDELLE 198 (204)
T ss_pred CCHHHHHH
Confidence 55544443
No 21
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.74 E-value=2.2e-16 Score=117.47 Aligned_cols=125 Identities=17% Similarity=0.284 Sum_probs=81.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchH--HHHHH-
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF--VGKEI- 93 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~--~~~~~- 93 (221)
....+|+++|++|+|||||+|+|++...........+.|..+..+. . +..+.+|||||+......... ....+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE--V--NDGFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE--e--CCcEEEEeCCCCccccCChhHHHHHHHHH
Confidence 5568999999999999999999998752111112333444444332 2 247899999998753322111 11111
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..++. ....++++++|+|++.+++..+...++.+... ..|+++++||+|...
T Consensus 92 ~~~l~-~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 92 EEYLE-KRENLKGVVLLMDIRHPLKELDLEMLEWLRER-----GIPVLIVLTKADKLK 143 (179)
T ss_pred HHHHH-hChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence 12222 22356899999999878888887766666542 347999999999875
No 22
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=1.1e-16 Score=129.43 Aligned_cols=125 Identities=19% Similarity=0.178 Sum_probs=86.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
.|+|+|.++||||||+|+|++.... ......+|..+....+.+..+..++++||||+.+.......+...+.+.+
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~--va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi--- 234 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPK--IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI--- 234 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCc--cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh---
Confidence 5789999999999999999986532 22334567778877777745678999999999864443334444444443
Q ss_pred cCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..++++++|+|+++.-+.++ ..|.+.+......-...|+++|+||+|+..
T Consensus 235 -e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 235 -ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred -hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 44589999999985443344 455555655422112458999999999865
No 23
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=1.6e-16 Score=117.01 Aligned_cols=127 Identities=20% Similarity=0.192 Sum_probs=83.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
.++|+++|.+|+|||||+|+|++........ ..+.+.......... .+..+.+|||||+.+.................
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD-IAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccC-CCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 4789999999999999999999876432221 223333443344444 66778999999998653222221111111222
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
..+..+|++++|+|+.+..+.....++..+... ..|+++++||+|+...
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILEE-----GKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc-----CCCEEEEEeccccCCc
Confidence 345678999999999877776665555444332 2479999999998763
No 24
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.74 E-value=3.3e-17 Score=119.82 Aligned_cols=150 Identities=16% Similarity=0.081 Sum_probs=87.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
.+|+++|.+|+|||||++++++...........+.+. ........ ....+.+|||||...+. ....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~~ 67 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTL--YKHNAKFEGKTILVDFWDTAGQERFQ-----------TMHA 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEE--EEEEEEECCEEEEEEEEeCCCchhhh-----------hhhH
Confidence 3789999999999999999987765322211111111 11122220 23467799999965422 2334
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHHH
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLR 177 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 177 (221)
..+..+|++++|+|++++.+..+ ..|+..+++... ..|+++|+||+|+.........++........+..++....
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 144 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP---EIPCIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGT 144 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 56678899999999986655444 566666665422 34899999999975311111222322212233445555555
Q ss_pred hHHHHHHh
Q 027618 178 DQQFEVDS 185 (221)
Q Consensus 178 ~~~~~~~~ 185 (221)
++.+.++.
T Consensus 145 gv~~l~~~ 152 (161)
T cd04124 145 NVVKLFQD 152 (161)
T ss_pred CHHHHHHH
Confidence 55555443
No 25
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=1.2e-16 Score=134.54 Aligned_cols=154 Identities=21% Similarity=0.217 Sum_probs=107.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
++|+++|.+|+|||||+|+|++....... ...+.|.........+ .+..+.+|||||+.+.. ......+......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~-~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVA-DTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD---DGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCCcccceEEEEEE-CCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 57999999999999999999988753232 2445666677777777 78899999999998622 2244555555666
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHHHhH
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQ 179 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 179 (221)
++..+|++++|+|+.++++..+....+++++. ..|+++|+||+|.... .....++..-.....+..++....++
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~~~-~~~~~~~~~lg~~~~~~iSa~~g~gv 150 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGPDE-EADAYEFYSLGLGEPYPISAEHGRGI 150 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCccc-hhhHHHHHhcCCCCCEEEEeeCCCCH
Confidence 67788999999999988888888777777764 3489999999996541 23334443322223444444444444
Q ss_pred HHHHH
Q 027618 180 QFEVD 184 (221)
Q Consensus 180 ~~~~~ 184 (221)
.+.++
T Consensus 151 ~~l~~ 155 (435)
T PRK00093 151 GDLLD 155 (435)
T ss_pred HHHHH
Confidence 44444
No 26
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.73 E-value=9.5e-17 Score=117.75 Aligned_cols=152 Identities=16% Similarity=0.129 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
.+|+++|++|+|||||+|++++......... ..........+... ....+.+|||||...+ .....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~~~~ 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLP--TIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY-----------LEVRN 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ccceeEEEEEEEECCeEEEEEEEECCccHHH-----------HHHHH
Confidence 3799999999999999999998875432211 11112222223221 2357889999996431 12334
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc---cccccEEEEEecCCCCCC---ChhhHHHHhcccCCchhhh
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK---KIFDYMIVVFTGGDELED---NDETLEDYLGRECPKPLKK 171 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~---~~~~~~ivv~tk~D~~~~---~~~~~~~~l~~~~~~~l~~ 171 (221)
..++.++++++|+|++++.+... ..|+..+.+.... ....|+++|+||+|.... .......+..+.....+..
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFET 147 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEE
Confidence 45678899999999986544333 5666666665432 134589999999998631 1233334444322334445
Q ss_pred hHHHHHhHHHHHH
Q 027618 172 GATKLRDQQFEVD 184 (221)
Q Consensus 172 ~~~~~~~~~~~~~ 184 (221)
++....++.+.++
T Consensus 148 Sa~~~~gi~~l~~ 160 (168)
T cd04119 148 SACTGEGVNEMFQ 160 (168)
T ss_pred ECCCCCCHHHHHH
Confidence 5554444444444
No 27
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.73 E-value=2.3e-16 Score=115.21 Aligned_cols=123 Identities=23% Similarity=0.246 Sum_probs=83.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
..+|+++|++|+|||||+|++++........ ....+.......... .+..+.++||||+.+..... ...+.....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~---~~~~~~~~~ 77 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSP-KPQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKL---GERMVKAAW 77 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccC-CCCceeceEEEEEEc-CCeEEEEEECCCCCcchHHH---HHHHHHHHH
Confidence 4789999999999999999999986533321 112233333333333 55788999999988643221 122333444
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
...+.+|++++|+++.+..+.....+.+.+... ..|+++|+||+|+..
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS-----KTPVILVLNKIDLVK 125 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-----CCCEEEEEEchhccc
Confidence 556778999999999866666666666666543 237999999999873
No 28
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.73 E-value=1.9e-16 Score=128.98 Aligned_cols=157 Identities=21% Similarity=0.175 Sum_probs=97.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
...+|+++|.+++|||||+|+|++...... ...+.|..+....+.++.+..+.++||||+... ...+..+.+...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~--~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~--l~~~lie~f~~tl 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAA--DQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD--LPHELVAAFRATL 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeec--cCCccccCCEEEEEEeCCCceEEEEecCccccc--CCHHHHHHHHHHH
Confidence 347899999999999999999999874322 223445555556666646778999999998531 1222333343332
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHH
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKL 176 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 176 (221)
..+..+|++++|+|++++...... .+.+.+.+. +.. ..|+++|+||+|+.. ...+..... .....+..|+...
T Consensus 264 -e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~~-~~piIlV~NK~Dl~~--~~~v~~~~~-~~~~~i~iSAktg 337 (351)
T TIGR03156 264 -EEVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GAE-DIPQLLVYNKIDLLD--EPRIERLEE-GYPEAVFVSAKTG 337 (351)
T ss_pred -HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-ccC-CCCEEEEEEeecCCC--hHhHHHHHh-CCCCEEEEEccCC
Confidence 345678999999999866554443 334445443 321 348999999999875 333332222 1122344555544
Q ss_pred HhHHHHHH
Q 027618 177 RDQQFEVD 184 (221)
Q Consensus 177 ~~~~~~~~ 184 (221)
.++.+.++
T Consensus 338 ~GI~eL~~ 345 (351)
T TIGR03156 338 EGLDLLLE 345 (351)
T ss_pred CCHHHHHH
Confidence 44444433
No 29
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.73 E-value=2.7e-16 Score=113.93 Aligned_cols=121 Identities=25% Similarity=0.253 Sum_probs=82.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
+.+|+++|++|+|||||+|++++....... ...+.+.........+ .+..+.++||||+.+..... .........
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~---~~~~~~~~~ 75 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVS-DIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEI---EKIGIERAR 75 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEecc-CCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcchH---HHHHHHHHH
Confidence 368999999999999999999987643222 2234444444445555 67789999999998654321 111122223
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.....+|++++|+|+.++.+..+...+.. ....|+++|+||+|+..
T Consensus 76 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 76 EAIEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLP 121 (157)
T ss_pred HHHhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCC
Confidence 44567799999999997776666554433 12348999999999876
No 30
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.72 E-value=2.7e-16 Score=115.82 Aligned_cols=119 Identities=16% Similarity=0.092 Sum_probs=76.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
..+|+++|++|+|||||++++++.........+.+.+.......... ....+.+|||||... +.....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~ 71 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDG-KQIKLQIWDTAGQES-----------FRSITR 71 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEECCCcHH-----------HHHHHH
Confidence 37999999999999999999998765333222222222222222211 234788999999532 222334
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+..+|++++|+|++++.+... ..|+..+++... ...|+++|+||.|+..
T Consensus 72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLES 123 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence 55678899999999985444333 445555554422 2348999999999874
No 31
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.2e-16 Score=114.64 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=108.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
+.-++|+|+|.+|+|||.|+-++.+..+.....++.++........+.. ....+.+|||.|.. +++..
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~g-k~iKlQIWDTAGQE-----------RFrti 74 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDG-KTIKLQIWDTAGQE-----------RFRTI 74 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecc-eEEEEEeeeccccH-----------HHhhh
Confidence 4458999999999999999999998887655544444443333333322 34579999999964 44466
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCc-hhhh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPK-PLKK 171 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~-~l~~ 171 (221)
+...++++|+||+|+|+++.-+... ..|++.+.+..... .|.++|+||+|+.+.. .+..++|....... .+..
T Consensus 75 t~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ET 152 (205)
T KOG0084|consen 75 TSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASEN--VPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLET 152 (205)
T ss_pred hHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCC--CCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeec
Confidence 6678899999999999997666666 67888888764444 3899999999986431 34456666654344 4556
Q ss_pred hHHHHHhHHHHHHh
Q 027618 172 GATKLRDQQFEVDS 185 (221)
Q Consensus 172 ~~~~~~~~~~~~~~ 185 (221)
|++.-.+..+.+..
T Consensus 153 SAK~~~NVe~~F~~ 166 (205)
T KOG0084|consen 153 SAKDSTNVEDAFLT 166 (205)
T ss_pred ccCCccCHHHHHHH
Confidence 66655555555544
No 32
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.72 E-value=2.4e-16 Score=128.46 Aligned_cols=136 Identities=24% Similarity=0.284 Sum_probs=101.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
...+|+++|.|++|||||+|+|+|......+ ...|+|.........+ +++.+.++||.|+-....-.+.+..--....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 5699999999999999999999999875554 4667888888888888 9999999999998753221111100000111
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHH
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDY 160 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~ 160 (221)
..+...++++++|+|+.++++.++.+.+..+.+. |. ++++|+||||....+....+++
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-g~----~~vIvvNKWDl~~~~~~~~~~~ 312 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEA-GR----GIVIVVNKWDLVEEDEATMEEF 312 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-CC----CeEEEEEccccCCchhhHHHHH
Confidence 2334566999999999999999999999988875 33 5999999999987433444444
No 33
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=5.7e-16 Score=127.67 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=85.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
.|+|+|.++||||||+|+|++... .......+|..+....+.+.....++|+||||+.........+...+.+.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~---- 234 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKH---- 234 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHH----
Confidence 689999999999999999998764 22234567777887777773345799999999986443333344444443
Q ss_pred cCCCcEEEEEEeCCC---C-CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 101 KDGIHAVLVVFSVRS---R-FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 101 ~~~~~~il~v~~~~~---~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+..++++++|+|+.. . .......+++.+......-...|.++|+||+|...
T Consensus 235 i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~ 289 (390)
T PRK12298 235 LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD 289 (390)
T ss_pred HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC
Confidence 455699999999871 1 11222455555554322112358999999999875
No 34
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.71 E-value=2.4e-16 Score=115.85 Aligned_cols=148 Identities=18% Similarity=0.078 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEE--Ee-eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRT--VL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
.+|+++|++|||||||+++++........ ..|........ .. .....+.+|||||...+....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~---------- 66 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKY----VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR---------- 66 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCceeeEEEEEEEEECCEEEEEEEEECCCChhhcccc----------
Confidence 37899999999999999999865532111 12222222222 11 023468899999976543221
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh-hhHHHHhcccCCchhhhhHH
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND-ETLEDYLGRECPKPLKKGAT 174 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~-~~~~~~l~~~~~~~l~~~~~ 174 (221)
...+..+|++++|+|+++..+... ..++..+.+..+ ..|+++|+||+|+..... ....++........+..++.
T Consensus 67 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~ 142 (166)
T cd00877 67 -DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAK 142 (166)
T ss_pred -HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCC
Confidence 134567899999999986544443 456666666533 458999999999863221 12223333233345666666
Q ss_pred HHHhHHHHHHh
Q 027618 175 KLRDQQFEVDS 185 (221)
Q Consensus 175 ~~~~~~~~~~~ 185 (221)
...++.++++.
T Consensus 143 ~~~~v~~~f~~ 153 (166)
T cd00877 143 SNYNFEKPFLW 153 (166)
T ss_pred CCCChHHHHHH
Confidence 66666666654
No 35
>PTZ00369 Ras-like protein; Provisional
Probab=99.71 E-value=3.2e-16 Score=117.64 Aligned_cols=152 Identities=20% Similarity=0.136 Sum_probs=91.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
..+|+++|.+|+|||||++++++.........+.+.+ ........ ....+.+|||||..++.. ..
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------l~ 70 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDS---YRKQCVIDEETCLLDILDTAGQEEYSA-----------MR 70 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhE---EEEEEEECCEEEEEEEEeCCCCccchh-----------hH
Confidence 4899999999999999999999876532211111111 11122221 223577899999765321 22
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhH
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGA 173 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~ 173 (221)
...++.++++++|+|++++-+... ..+++.+.+.... ...|+++|+||+|+.... .....++........+..++
T Consensus 71 ~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sa 149 (189)
T PTZ00369 71 DQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSA 149 (189)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeC
Confidence 235567899999999986554333 4556666554322 234899999999975421 11223333322233556666
Q ss_pred HHHHhHHHHHHh
Q 027618 174 TKLRDQQFEVDS 185 (221)
Q Consensus 174 ~~~~~~~~~~~~ 185 (221)
....++.+.++.
T Consensus 150 k~~~gi~~~~~~ 161 (189)
T PTZ00369 150 KQRVNVDEAFYE 161 (189)
T ss_pred CCCCCHHHHHHH
Confidence 666667666665
No 36
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.71 E-value=6.5e-16 Score=112.91 Aligned_cols=116 Identities=22% Similarity=0.306 Sum_probs=76.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccc-cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
.|+++|++|+|||||+|+|++....... ....+.|.........+..+..+.+|||||..+ +...+..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-----------~~~~~~~ 70 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-----------FIKNMLA 70 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-----------HHHHHHh
Confidence 5899999999999999999985421111 112234545554555552267899999999642 1222334
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.+..+|++++|+|+++....+....+..+... +. .|+++++||+|...
T Consensus 71 ~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~---~~~ilv~NK~Dl~~ 118 (164)
T cd04171 71 GAGGIDLVLLVVAADEGIMPQTREHLEILELL-GI---KRGLVVLTKADLVD 118 (164)
T ss_pred hhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-CC---CcEEEEEECccccC
Confidence 56678999999999865545554444444332 32 37999999999875
No 37
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.71 E-value=4.4e-16 Score=114.38 Aligned_cols=150 Identities=13% Similarity=0.122 Sum_probs=88.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|++|+|||||++++++.........+.+ .......+.. .+ ..+.+|||||... +....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~ 68 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG--VEFGTRIIEV-NGQKIKLQIWDTAGQER-----------FRAVT 68 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccc--eeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHH
Confidence 6899999999999999999998764322111111 1111122223 33 3678999999542 22223
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhH
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGA 173 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~ 173 (221)
...++.+|++++|+|++++-+... ..|+..+..... ...|+++|+||+|+.... .....++..+.....+..++
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 146 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSA 146 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEEC
Confidence 445678899999999986544333 455555544322 234799999999986421 12334444332233444555
Q ss_pred HHHHhHHHHHHh
Q 027618 174 TKLRDQQFEVDS 185 (221)
Q Consensus 174 ~~~~~~~~~~~~ 185 (221)
....++.+.+..
T Consensus 147 ~~~~~i~e~f~~ 158 (166)
T cd04122 147 KTGENVEDAFLE 158 (166)
T ss_pred CCCCCHHHHHHH
Confidence 555555555443
No 38
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.71 E-value=3.8e-16 Score=118.34 Aligned_cols=153 Identities=11% Similarity=0.049 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|++|+|||||++++++........ ...........+.+. ....+.+|||||...+. ...
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~--~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~-----------~~~ 67 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYK--ATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG-----------GMT 67 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CceeEEEEEEEEEECCCCEEEEEEEECCCchhhh-----------hhH
Confidence 378999999999999999999875422211 111111222233331 23467899999974321 223
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCC---ChhhHHHHhcccC-Cchhh
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELED---NDETLEDYLGREC-PKPLK 170 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~---~~~~~~~~l~~~~-~~~l~ 170 (221)
...++.++++++|+|++++.+... ..|...+...... ....|+++|+||.|+... ....+.++.+... ...+.
T Consensus 68 ~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e 147 (201)
T cd04107 68 RVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFE 147 (201)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEE
Confidence 456678899999999986554444 4455555543221 234589999999998621 1345566665422 24555
Q ss_pred hhHHHHHhHHHHHHh
Q 027618 171 KGATKLRDQQFEVDS 185 (221)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (221)
.++....++.+.++.
T Consensus 148 ~Sak~~~~v~e~f~~ 162 (201)
T cd04107 148 TSAKEGINIEEAMRF 162 (201)
T ss_pred EeCCCCCCHHHHHHH
Confidence 666655566665554
No 39
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=1.3e-15 Score=126.38 Aligned_cols=157 Identities=20% Similarity=0.159 Sum_probs=97.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
.|+|+|.++||||||+|+|++...-. .....+|..+....+.+..+..++++||||+.........+...+.+.+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kI--a~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi--- 234 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKI--ANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI--- 234 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCcc--ccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH---
Confidence 78999999999999999999876321 2344567777777777733788999999999763333333444444443
Q ss_pred cCCCcEEEEEEeCCCC---CCH-HHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHH
Q 027618 101 KDGIHAVLVVFSVRSR---FSQ-EEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKL 176 (221)
Q Consensus 101 ~~~~~~il~v~~~~~~---~~~-~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 176 (221)
..++++++|+|+++. -.. ....+.+.|......-...|.+||+||+|+.. ....++++.+......+..|+..-
T Consensus 235 -er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~-~~e~l~~l~~~l~~~i~~iSA~tg 312 (424)
T PRK12297 235 -ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE-AEENLEEFKEKLGPKVFPISALTG 312 (424)
T ss_pred -hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC-CHHHHHHHHHHhCCcEEEEeCCCC
Confidence 345999999999732 121 22455556655422223458999999999643 233344444321123344444444
Q ss_pred HhHHHHHH
Q 027618 177 RDQQFEVD 184 (221)
Q Consensus 177 ~~~~~~~~ 184 (221)
..+.++++
T Consensus 313 eGI~eL~~ 320 (424)
T PRK12297 313 QGLDELLY 320 (424)
T ss_pred CCHHHHHH
Confidence 44444433
No 40
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.71 E-value=2.4e-16 Score=115.66 Aligned_cols=153 Identities=18% Similarity=0.119 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
.+|+++|++|+|||||++++++.........+.+ ........... ....+.++||||...+.. ....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~-----------~~~~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCSK-NICTLQITDTTGSHQFPA-----------MQRL 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcch-heEEEEEEECC-EEEEEEEEECCCCCcchH-----------HHHH
Confidence 6899999999999999999998765322211111 11122222222 335678999999865321 1123
Q ss_pred hcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc-ccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhhhhHH
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK-IFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKKGAT 174 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~~~~ 174 (221)
.+..+|++++|++++++.+... ..+++.+++..+.. ...|+++|+||+|...... .....+........+..++.
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~ 148 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAK 148 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecC
Confidence 4567799999999986655544 56667777654422 3458999999999864211 12222332212234445665
Q ss_pred HHHhHHHHHHh
Q 027618 175 KLRDQQFEVDS 185 (221)
Q Consensus 175 ~~~~~~~~~~~ 185 (221)
...++.+.++.
T Consensus 149 ~g~~v~~~f~~ 159 (165)
T cd04140 149 TNHNVQELFQE 159 (165)
T ss_pred CCCCHHHHHHH
Confidence 55555555543
No 41
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=9.5e-16 Score=129.19 Aligned_cols=127 Identities=22% Similarity=0.214 Sum_probs=91.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
...+|+++|++|+|||||+|+|++....... ...+.|.........+ .+..+.++||||+.......+..........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVS-DIAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 4689999999999999999999988754333 2345566665555555 7788999999998764433222221111222
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+++.+|++++|+|+.++.+.++...+..+.+. + .|+++++||+|+..
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-~----~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEA-G----RALVIVVNKWDLVD 298 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCCC
Confidence 2355677999999999988998888777766553 2 37999999999874
No 42
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.70 E-value=2.8e-16 Score=118.83 Aligned_cols=149 Identities=13% Similarity=0.141 Sum_probs=95.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
.|+++|..|+|||||+++++...+.... ....+.......+.+ ++ ..+.+|||+|...+ .....
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~--~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~~-----------~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEAC--KSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQERF-----------NSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcC--CCcceeEEEEEEEEE-CCEEEEEEEEeCCCchhh-----------HHHHH
Confidence 5899999999999999999876642221 111222222233444 43 56789999996532 23334
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhccc-CCchhhhhH
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRE-CPKPLKKGA 173 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~-~~~~l~~~~ 173 (221)
.+++.+|++++|+|++++-+... ..|++.+.+.... ..|+++|+||+|+.... ....+++.++. ...++..|+
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~--~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSA 145 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASA 145 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecC
Confidence 56788899999999997666555 4566666554322 34899999999975321 12334444321 234566777
Q ss_pred HHHHhHHHHHHh
Q 027618 174 TKLRDQQFEVDS 185 (221)
Q Consensus 174 ~~~~~~~~~~~~ 185 (221)
....++.+.++.
T Consensus 146 ktg~gV~e~F~~ 157 (202)
T cd04120 146 KDNFNVDEIFLK 157 (202)
T ss_pred CCCCCHHHHHHH
Confidence 777777777765
No 43
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.70 E-value=3.2e-16 Score=115.93 Aligned_cols=121 Identities=20% Similarity=0.150 Sum_probs=76.1
Q ss_pred EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC-CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcC
Q 027618 24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKD 102 (221)
Q Consensus 24 l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (221)
++|++|||||||+|+|++.... .. ...+.|..+......+ . +..+.++||||+.+.....+.+...+. ..+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~-~~-~~~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~----~~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK-VA-NYPFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQFL----AHIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc-cc-CCCceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHHH----HHHh
Confidence 5899999999999999998641 11 2234455555555656 5 888999999998643222222222222 2345
Q ss_pred CCcEEEEEEeCCCCC-----C-HHH-HHHHHHHHHHhcc-----cccccEEEEEecCCCCC
Q 027618 103 GIHAVLVVFSVRSRF-----S-QEE-EAALHSLQTLFGK-----KIFDYMIVVFTGGDELE 151 (221)
Q Consensus 103 ~~~~il~v~~~~~~~-----~-~~~-~~~~~~l~~~~~~-----~~~~~~ivv~tk~D~~~ 151 (221)
.+|++++|+|+.+.. . ..+ ..+...+...... ....|+++|+||+|+..
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 579999999998552 2 222 3333344332111 12458999999999876
No 44
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.70 E-value=8.3e-16 Score=113.06 Aligned_cols=150 Identities=18% Similarity=0.091 Sum_probs=88.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
..+|+++|++|+|||||++++++.........+. ........+.+ .+ ..+.+|||||...+ ...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~--~~~~~~~~~~~-~~~~~~l~l~D~~g~~~~-----------~~~ 68 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTI--GIDFKIRTIEL-DGKKIKLQIWDTAGQERF-----------RTI 68 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCc--cceEEEEEEEE-CCEEEEEEEEeCCchHHH-----------HHH
Confidence 4799999999999999999999876532221111 12222223333 33 46789999995431 122
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG 172 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~ 172 (221)
....+..+|++++|+|++++.+... ..|+..+..... ...|+++|+||.|+.... .....++........+..+
T Consensus 69 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 146 (167)
T cd01867 69 TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS--EDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETS 146 (167)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEe
Confidence 3345678899999999986544333 455555554322 234899999999987421 1223334332222334445
Q ss_pred HHHHHhHHHHHH
Q 027618 173 ATKLRDQQFEVD 184 (221)
Q Consensus 173 ~~~~~~~~~~~~ 184 (221)
+....++.+.++
T Consensus 147 a~~~~~v~~~~~ 158 (167)
T cd01867 147 AKANINVEEAFF 158 (167)
T ss_pred CCCCCCHHHHHH
Confidence 544444444444
No 45
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.70 E-value=1.5e-15 Score=127.85 Aligned_cols=126 Identities=21% Similarity=0.190 Sum_probs=90.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
...+|+++|.+|+|||||+|+|++....... ...+.|.........+ .+..+.+|||||+.......+.+........
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVS-DIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecC-CCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 4578999999999999999999998643332 2344555555555555 7778999999999765433222221111222
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (221)
..+++.+|++++|+|+.++.+..+..++..+.+. ..|+++|+||+|+.
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLRIAGLILEA-----GKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-----CCcEEEEEECcccC
Confidence 3456778999999999988998888777766553 23799999999987
No 46
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.69 E-value=1.6e-15 Score=127.02 Aligned_cols=123 Identities=18% Similarity=0.173 Sum_probs=85.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+.+|+++|++|+|||||+|+|++....... ...++|.......+.+ .+..+.+|||||+.++....+ ..-....
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs-~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~~~ie---~~gi~~~ 276 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVS-DIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHADFVE---RLGIEKS 276 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccchhHHH---HHHHHHH
Confidence 4589999999999999999999987643222 2345566666667777 788899999999875321111 1111222
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
...+..+|++++|+|++++.+..+. ++..+.. . ..|+++|+||+|+..
T Consensus 277 ~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~---~--~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 277 FKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK---S--KKPFILVLNKIDLKI 324 (442)
T ss_pred HHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh---C--CCCEEEEEECccCCC
Confidence 3455678999999999877766554 4444432 1 247999999999865
No 47
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.69 E-value=5.9e-16 Score=113.61 Aligned_cols=150 Identities=11% Similarity=0.056 Sum_probs=87.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|++|+|||||++++++.........+ ............ ++ ..+.+|||||...+ ....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~~-----------~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVST--VGIDFKVKTVFR-NDKRVKLQIWDTAGQERY-----------RTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--eeeEEEEEEEEE-CCEEEEEEEEECCChHHH-----------HHHH
Confidence 68999999999999999999987652221111 111122222222 22 46889999996431 1223
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhhhhH
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKKGA 173 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~~~ 173 (221)
...++.+|++++|+|.+++-+... ..|++.+.+.... ..|+++|+||+|+..... ....++.....-..+..++
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 145 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASA 145 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEEC
Confidence 456788899999999985433332 4455555443222 347999999999864221 2222333221123444555
Q ss_pred HHHHhHHHHHHh
Q 027618 174 TKLRDQQFEVDS 185 (221)
Q Consensus 174 ~~~~~~~~~~~~ 185 (221)
....++.+.++.
T Consensus 146 ~~~~gv~~l~~~ 157 (165)
T cd01865 146 KENINVKQVFER 157 (165)
T ss_pred CCCCCHHHHHHH
Confidence 544455554443
No 48
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.69 E-value=7e-16 Score=112.84 Aligned_cols=151 Identities=20% Similarity=0.162 Sum_probs=89.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
..+|+++|++|+|||||++++++.... ....+ .+.......... .+ ..+.+|||||..++. ..
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~-~~~~~--t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~ 66 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFV-TDYDP--TIEDSYTKQCEI-DGQWAILDILDTAGQEEFS-----------AM 66 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-cccCC--CccceEEEEEEE-CCEEEEEEEEECCCCcchh-----------HH
Confidence 478999999999999999999987542 21111 111111222223 33 467889999976532 22
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG 172 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~ 172 (221)
....++.+|++++|+++++..+... ..++..+...... ...|+++++||+|+.... .....++........+..+
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 145 (164)
T cd04145 67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDR-DEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETS 145 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEee
Confidence 2234566799999999986544333 4455555543222 234899999999976421 1233444433223445556
Q ss_pred HHHHHhHHHHHHh
Q 027618 173 ATKLRDQQFEVDS 185 (221)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (221)
+....++.+.++.
T Consensus 146 a~~~~~i~~l~~~ 158 (164)
T cd04145 146 AKDRLNVDKAFHD 158 (164)
T ss_pred CCCCCCHHHHHHH
Confidence 6555555555543
No 49
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.69 E-value=4.9e-16 Score=114.08 Aligned_cols=150 Identities=17% Similarity=0.172 Sum_probs=88.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|++|+|||||++++++....... ..+.+.......... .+ ..+.+|||||...+ ....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~-----------~~~~ 68 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERF-----------RTIT 68 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEE-CCEEEEEEEEECCCcHhH-----------HHHH
Confidence 68999999999999999999987653221 112222222233333 33 36789999995431 1222
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhhhhH
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKKGA 173 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~~~ 173 (221)
...++.+|++++|+|++++.+... ..|+..+...... ..|+++|+||.|...... .....+........+..++
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSA 146 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEEC
Confidence 345577899999999985443333 4455555543211 248999999999754211 2233343322223444555
Q ss_pred HHHHhHHHHHHh
Q 027618 174 TKLRDQQFEVDS 185 (221)
Q Consensus 174 ~~~~~~~~~~~~ 185 (221)
....++.+.++.
T Consensus 147 ~~~~~v~~~~~~ 158 (166)
T cd01869 147 KNATNVEQAFMT 158 (166)
T ss_pred CCCcCHHHHHHH
Confidence 555555555543
No 50
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.69 E-value=4.8e-16 Score=113.50 Aligned_cols=150 Identities=15% Similarity=0.113 Sum_probs=88.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
.+|+++|++|+|||||++++++.......... .+........... ....+.+|||||...+ .....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-----------~~~~~ 67 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHT--IGVEFGSKIIRVGGKRVKLQIWDTAGQERF-----------RSVTR 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc--eeeeEEEEEEEECCEEEEEEEEECcchHHH-----------HHhHH
Confidence 37899999999999999999987653322111 1111222222221 2346789999996432 12223
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT 174 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~ 174 (221)
..++.+|++++|+|++++.+... ..++..++..... ..|+++++||+|..... ...+..+........+..++.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASP--NIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSAL 145 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECC
Confidence 45577899999999986555443 4555555544322 34899999999986421 223344444322334445554
Q ss_pred HHHhHHHHHH
Q 027618 175 KLRDQQFEVD 184 (221)
Q Consensus 175 ~~~~~~~~~~ 184 (221)
....+.+.++
T Consensus 146 ~~~~i~~~~~ 155 (161)
T cd04113 146 TGENVEEAFL 155 (161)
T ss_pred CCCCHHHHHH
Confidence 4444444443
No 51
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.69 E-value=1.2e-15 Score=113.39 Aligned_cols=153 Identities=13% Similarity=0.049 Sum_probs=90.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-----------CCceEEEEeCCCCCCCCCCch
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------DGQVVNVIDTPGLFDFSAGSE 87 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~liDtPG~~~~~~~~~ 87 (221)
..+|+++|++|+|||||++++++......... ............+. ....+.+|||||..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------- 74 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFIT--TVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE------- 74 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCC--ccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH-------
Confidence 47899999999999999999988765322111 11111111122220 23568899999943
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcc
Q 027618 88 FVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGR 163 (221)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~ 163 (221)
++.......+..+|++++|+|+++.-+..+ ..|+..+..... ....|+++|+||+|+.... .....++...
T Consensus 75 ----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~ 149 (180)
T cd04127 75 ----RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQRQVSEEQAKALADK 149 (180)
T ss_pred ----HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhcCccCHHHHHHHHHH
Confidence 222334456678899999999985544444 455555554321 1234799999999986421 2234444443
Q ss_pred cCCchhhhhHHHHHhHHHHHHh
Q 027618 164 ECPKPLKKGATKLRDQQFEVDS 185 (221)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~~~~~ 185 (221)
..-..+..++....++.+.++.
T Consensus 150 ~~~~~~e~Sak~~~~v~~l~~~ 171 (180)
T cd04127 150 YGIPYFETSAATGTNVEKAVER 171 (180)
T ss_pred cCCeEEEEeCCCCCCHHHHHHH
Confidence 2223444555555555554443
No 52
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.69 E-value=4.8e-16 Score=113.46 Aligned_cols=151 Identities=18% Similarity=0.141 Sum_probs=88.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
.+|+++|++|+|||||++++++...........+.+.. .....+. ....+.+|||||...+. ....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~ 67 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFK--VKTLTVDGKKVKLAIWDTAGQERFR-----------TLTS 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEE--EEEEEECCEEEEEEEEECCCchhhh-----------hhhH
Confidence 37899999999999999999987653322222222222 2222221 23568899999965321 2223
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhhhhHHH
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKKGATK 175 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~~~~~~ 175 (221)
..++.+|++++|+|.++..+... ..++..+.+... ....|+++|+||+|..... .....++.....-..+..++..
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 146 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKT 146 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCC
Confidence 44577899999999985554444 345555655432 2345799999999987321 2233444443222344445444
Q ss_pred HHhHHHHHH
Q 027618 176 LRDQQFEVD 184 (221)
Q Consensus 176 ~~~~~~~~~ 184 (221)
...+.+.++
T Consensus 147 ~~gi~~~~~ 155 (161)
T cd01863 147 RDGVQQAFE 155 (161)
T ss_pred CCCHHHHHH
Confidence 444444443
No 53
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.69 E-value=1.5e-15 Score=134.53 Aligned_cols=157 Identities=21% Similarity=0.196 Sum_probs=109.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
...+|+++|.+++|||||+|+|++....... ...+.|.........+ .+..+.+|||||+... ...+...+...+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~---~~~~~~~~~~~~ 348 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEAD---VEGIDSAIASQA 348 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCC---CccHHHHHHHHH
Confidence 3478999999999999999999987643232 2456677776666677 7889999999998742 123445566666
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHHH
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLR 177 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 177 (221)
..++..+|++++|+|+.+.++..+..+.+.++.. ..|+++|+||+|.... .....++........+..|+....
T Consensus 349 ~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~~~-~~~~~~~~~lg~~~~~~iSA~~g~ 422 (712)
T PRK09518 349 QIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQAS-EYDAAEFWKLGLGEPYPISAMHGR 422 (712)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEECcccccc-hhhHHHHHHcCCCCeEEEECCCCC
Confidence 6677888999999999888888888888877652 3489999999997642 222233332222233445555555
Q ss_pred hHHHHHHh
Q 027618 178 DQQFEVDS 185 (221)
Q Consensus 178 ~~~~~~~~ 185 (221)
++.++++.
T Consensus 423 GI~eLl~~ 430 (712)
T PRK09518 423 GVGDLLDE 430 (712)
T ss_pred CchHHHHH
Confidence 55555544
No 54
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.69 E-value=8.5e-16 Score=116.06 Aligned_cols=160 Identities=14% Similarity=0.071 Sum_probs=93.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|.+|+|||||++++++....... ....+.......+.+ .+ ..+.+|||||...+..... .+.....
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~--~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~~---~e~~~~~ 74 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEY--IPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTAG---QEWMDPR 74 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCccc--CCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccch---hHHHHHH
Confidence 37899999999999999999987653221 111111222223333 44 4677999999875432211 1222223
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-ccccccEEEEEecCCCCCCC---hhhHHHHhcc-cCCchhhh
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-KKIFDYMIVVFTGGDELEDN---DETLEDYLGR-ECPKPLKK 171 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~-~~~~~l~~ 171 (221)
..++..+|++++|+|++++-+... ..+.+.+.+... .....|+++|+||+|+.... .....++..+ ..-.++..
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~ 154 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLEC 154 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEe
Confidence 345578899999999986544443 445555555431 12235899999999985421 1223333332 12234556
Q ss_pred hHHHHHhHHHHHHh
Q 027618 172 GATKLRDQQFEVDS 185 (221)
Q Consensus 172 ~~~~~~~~~~~~~~ 185 (221)
|+....++.+.++.
T Consensus 155 Sak~g~~v~~lf~~ 168 (198)
T cd04142 155 SAKYNWHILLLFKE 168 (198)
T ss_pred cCCCCCCHHHHHHH
Confidence 66666666665555
No 55
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.69 E-value=8.9e-16 Score=115.01 Aligned_cols=151 Identities=15% Similarity=0.099 Sum_probs=99.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
...+|+++|..|+|||||+.++.+...... . ....+.......+.. ++ ..+.+|||||...+ ..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~-~-~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~~-----------~~ 70 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESP-Y-GYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGRF-----------CT 70 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCC-C-CCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHHH-----------HH
Confidence 348999999999999999999987543211 1 111222222233333 33 56789999996532 12
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC---ChhhHHHHhcccCCchhhh
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED---NDETLEDYLGRECPKPLKK 171 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~---~~~~~~~~l~~~~~~~l~~ 171 (221)
.....++.+|++++|+|++++.+... ..|++.+.+... ..|+++|+||.|+... ..+..+++.+...-.++..
T Consensus 71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~---~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~ 147 (189)
T cd04121 71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP---GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEV 147 (189)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEe
Confidence 33345678899999999997666555 567777766432 3489999999997532 1345566665444456667
Q ss_pred hHHHHHhHHHHHHh
Q 027618 172 GATKLRDQQFEVDS 185 (221)
Q Consensus 172 ~~~~~~~~~~~~~~ 185 (221)
|+....++.+.++.
T Consensus 148 SAk~g~~V~~~F~~ 161 (189)
T cd04121 148 SPLCNFNITESFTE 161 (189)
T ss_pred cCCCCCCHHHHHHH
Confidence 77777777776665
No 56
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=6.4e-15 Score=125.05 Aligned_cols=125 Identities=22% Similarity=0.274 Sum_probs=88.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
...+|+++|++|+|||||+|+|++....... ...+.|.......+.+ .+..+.+|||||+....... ...+....+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s-~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~--~~~e~~~~~ 285 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVD-DVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQA--SGHEYYASL 285 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCccCCcceEEEEE-CCEEEEEEECCCcccccccc--chHHHHHHH
Confidence 4589999999999999999999998753222 2345555555555556 77888999999985421111 111222222
Q ss_pred --HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 --GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 --~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..++..+|++++|+|++++.+..+..++..+.+. ..|+++|+||+|+..
T Consensus 286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~-----~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 286 RTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEA-----GRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence 2345788999999999988888887777666542 247999999999875
No 57
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.69 E-value=7.3e-16 Score=116.64 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=90.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
...+|+++|++|+|||||++++++........ ...........+.+ .+ ..+.+|||||...+ ..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~-----------~~ 70 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYI--TTIGVDFKIRTVEI-NGERVKLQIWDTAGQERF-----------RT 70 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcC--ccccceeEEEEEEE-CCEEEEEEEEeCCCchhH-----------HH
Confidence 35899999999999999999999876422211 11111222223333 23 46789999996432 12
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhh
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKK 171 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~ 171 (221)
.....+..++++++|+|++++-+... ..|++.+..... ..|+++|+||+|+.... ......+........+..
T Consensus 71 ~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 147 (199)
T cd04110 71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD---DVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFET 147 (199)
T ss_pred HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence 22345677899999999986544333 445555554322 34899999999986421 122333443322334555
Q ss_pred hHHHHHhHHHHHHh
Q 027618 172 GATKLRDQQFEVDS 185 (221)
Q Consensus 172 ~~~~~~~~~~~~~~ 185 (221)
++....++.+.++.
T Consensus 148 Sa~~~~gi~~lf~~ 161 (199)
T cd04110 148 SAKENINVEEMFNC 161 (199)
T ss_pred ECCCCcCHHHHHHH
Confidence 55555555555554
No 58
>PRK11058 GTPase HflX; Provisional
Probab=99.69 E-value=1.6e-15 Score=126.31 Aligned_cols=125 Identities=21% Similarity=0.115 Sum_probs=84.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
+.|+++|.+|||||||+|+|++...... ...+.|..+....+.++....+.++||||+... ...+.+..+... ..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~--~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~t-l~ 272 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAA--DQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKAT-LQ 272 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeec--cCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHH-HH
Confidence 6899999999999999999999876422 223445555555565634458899999999542 123344444443 34
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....+|++++|+|++++....... +.+.+.+. +.. ..|+++|+||+|+..
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~~-~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEI-DAH-EIPTLLVMNKIDMLD 323 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh-ccC-CCCEEEEEEcccCCC
Confidence 457889999999998665544433 33444443 321 348999999999875
No 59
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.68 E-value=1.4e-15 Score=111.51 Aligned_cols=150 Identities=11% Similarity=0.113 Sum_probs=89.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
.++|+++|++|+|||||++++++........ ...........+.+ .+ ..+.+|||||... +...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~~ 68 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG--NTIGVDFTMKTLEI-EGKRVKLQIWDTAGQER-----------FRTI 68 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC--CccceEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHH
Confidence 4899999999999999999998765432221 11122233333444 33 4688999999532 2222
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhccc-CCchhhh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRE-CPKPLKK 171 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~-~~~~l~~ 171 (221)
....++.+|++++|+|+++..+... ..|+..+..... ...|+++|+||+|+..... ....++.+.. ....+..
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~ 146 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA--SNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLET 146 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEE
Confidence 3345577899999999986544333 566666665422 2348999999999865321 2233333321 1223445
Q ss_pred hHHHHHhHHHHHH
Q 027618 172 GATKLRDQQFEVD 184 (221)
Q Consensus 172 ~~~~~~~~~~~~~ 184 (221)
++....++.+.++
T Consensus 147 Sa~~~~~v~~~~~ 159 (165)
T cd01864 147 SAKESQNVEEAFL 159 (165)
T ss_pred ECCCCCCHHHHHH
Confidence 5554445554444
No 60
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.68 E-value=2.7e-15 Score=118.58 Aligned_cols=125 Identities=23% Similarity=0.251 Sum_probs=83.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeeE--EEEEEeeCC--ceEEEEeCCCCCCCCCCchH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCE--MQRTVLKDG--QVVNVIDTPGLFDFSAGSEF 88 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~------~~~~t~~~~--~~~~~~~~~--~~~~liDtPG~~~~~~~~~~ 88 (221)
.++|+++|++|+|||||+|+|++......... ....|.... ...... .+ ..+.+|||||+.++.. +..
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~-~g~~~~l~iiDTpGfgd~~~-~~~ 81 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE-NGVKLKLTVIDTPGFGDNIN-NSD 81 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE-CCEEEEEEEEecCCcccccc-chh
Confidence 47999999999999999999999876544221 112232222 222333 34 4689999999987643 333
Q ss_pred HHHHHHHHHHhh------------------cCCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCC
Q 027618 89 VGKEIVKCIGMA------------------KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (221)
Q Consensus 89 ~~~~~~~~~~~~------------------~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~ 149 (221)
.++.+..++... -..+|+++|+++.. .++++.+...++.+.+ ..|+++|+||+|.
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~------~v~vi~VinK~D~ 155 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK------RVNIIPVIAKADT 155 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc------cCCEEEEEECCCc
Confidence 444444322211 12578999999886 3577777777777754 2379999999999
Q ss_pred CC
Q 027618 150 LE 151 (221)
Q Consensus 150 ~~ 151 (221)
+.
T Consensus 156 l~ 157 (276)
T cd01850 156 LT 157 (276)
T ss_pred CC
Confidence 76
No 61
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.68 E-value=6.8e-16 Score=115.75 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=88.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
.+|+++|++|+|||||++++++.........+ .........+... ....+.+|||||...+ .....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~-----------~~~~~ 67 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKST--IGVDFKIKTVYIENKIIKLQIWDTNGQERF-----------RSLNN 67 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--eeeEEEEEEEEECCEEEEEEEEECCCcHHH-----------HhhHH
Confidence 47999999999999999999987653211111 1122222233331 1245779999995431 12334
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT 174 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~ 174 (221)
..+..+|++++|+|.+++-+... ..|+..+....+. ..|+++++||.|..... ......+.....-..+..++.
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~--~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 145 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARE--NVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAK 145 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCC
Confidence 56678899999999986544333 3455555554322 24799999999976421 122233333211234455555
Q ss_pred HHHhHHHHHHh
Q 027618 175 KLRDQQFEVDS 185 (221)
Q Consensus 175 ~~~~~~~~~~~ 185 (221)
....+.+.++.
T Consensus 146 ~~~~i~~~f~~ 156 (188)
T cd04125 146 QSINVEEAFIL 156 (188)
T ss_pred CCCCHHHHHHH
Confidence 44555554444
No 62
>PRK04213 GTP-binding protein; Provisional
Probab=99.68 E-value=3.3e-15 Score=113.17 Aligned_cols=122 Identities=22% Similarity=0.193 Sum_probs=74.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH--
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK-- 95 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~-- 95 (221)
...+|+++|.+|+|||||+|+|++.... .+ ...+.|.... ...+ . .+.+|||||+...........+.+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~-~~~~~t~~~~--~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VG-KRPGVTRKPN--HYDW-G--DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cC-CCCceeeCce--EEee-c--ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 4579999999999999999999987642 22 1223343332 2323 2 68899999986543333222233333
Q ss_pred --HHHhhcCCCcEEEEEEeCCCCCC-----------HHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 96 --CIGMAKDGIHAVLVVFSVRSRFS-----------QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 96 --~~~~~~~~~~~il~v~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
++......++++++|+|.+.... ..+...+..+.. . ..|+++|+||+|+..
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~--~~p~iiv~NK~Dl~~ 144 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---L--GIPPIVAVNKMDKIK 144 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---c--CCCeEEEEECccccC
Confidence 23333455689999998863211 122333333332 1 247999999999865
No 63
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.68 E-value=1.3e-15 Score=111.39 Aligned_cols=116 Identities=19% Similarity=0.212 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|++|+|||||++++++....... ....+.........+ .+ ..+.+|||||... .....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~-----------~~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQY--KSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQER-----------FRSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 47999999999999999999987653221 112222222233333 33 4678999999532 11233
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
...+..+|++++|+|+.+..+... ..|+..+...... ..|+++++||+|...
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~--~~pivvv~nK~D~~~ 119 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADP--NVVIMLVGNKSDLED 119 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhccc
Confidence 345677899999999985444443 3455555544222 358999999999765
No 64
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.68 E-value=9.5e-16 Score=111.84 Aligned_cols=116 Identities=14% Similarity=0.127 Sum_probs=76.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|++|+|||||++++++....... ....+.........+ .+ ..+.+|||||... ....+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~-----------~~~~~ 66 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQY--QATIGIDFLSKTMYL-EDKTVRLQLWDTAGQER-----------FRSLI 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccC--CCceeeeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHH
Confidence 37999999999999999999988764322 222233333333434 33 3588999999532 11233
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
...+..+|++++|++++++-+... ..++..+....+. ..|+++++||+|...
T Consensus 67 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~ 119 (161)
T cd01861 67 PSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSD 119 (161)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhccc
Confidence 345577899999999986544433 4555555443232 348999999999854
No 65
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.68 E-value=1.1e-15 Score=112.22 Aligned_cols=114 Identities=16% Similarity=0.158 Sum_probs=77.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
++|+++|++|+|||||+|+|++...... ...+.|.........+. .+..+.++||||...+ ....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-----------~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-----------TNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-----------HHHH
Confidence 3689999999999999999998765322 22234444444444441 3678999999997431 1112
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
......+|++++|+++++.........+..+... ..|+++|+||+|+..
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~-----~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKAA-----NVPFIVALNKIDKPN 116 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHc-----CCCEEEEEEceeccc
Confidence 2345677999999999866655555555555431 247999999999875
No 66
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.68 E-value=5.9e-16 Score=118.53 Aligned_cols=153 Identities=16% Similarity=0.099 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|++|+|||||++++++....... ....+.......+.+.. ...+.+|||||...+ ....
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~--~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~-----------~~l~ 67 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSY--KQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG-----------GKML 67 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH-----------HHHH
Confidence 37899999999999999999987642221 11112222222333322 357889999995421 1233
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhhhh
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKKG 172 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~~ 172 (221)
...+..+|++++|+|+++.-+... ..|+..+.+.... ....|+++|+||+|+..... ....++.+...-..+..+
T Consensus 68 ~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iS 147 (215)
T cd04109 68 DKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVS 147 (215)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEE
Confidence 345678899999999986544444 4577777766443 22346899999999864211 233444443222344456
Q ss_pred HHHHHhHHHHHHh
Q 027618 173 ATKLRDQQFEVDS 185 (221)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (221)
+.....+.++++.
T Consensus 148 Aktg~gv~~lf~~ 160 (215)
T cd04109 148 AKTGDRVNLLFQQ 160 (215)
T ss_pred CCCCCCHHHHHHH
Confidence 5555566555554
No 67
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.68 E-value=2.4e-15 Score=121.60 Aligned_cols=125 Identities=22% Similarity=0.216 Sum_probs=83.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
.|+++|.++||||||+|+|++..... .....+|..+....+.+.....+.++||||+.+.......+...+.+.+
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~v--a~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi--- 233 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPKI--ADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI--- 233 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCccc--cCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH---
Confidence 67999999999999999999875321 2233456777777777733488999999999764433333444444444
Q ss_pred cCCCcEEEEEEeCCCC---CCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 101 KDGIHAVLVVFSVRSR---FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 101 ~~~~~~il~v~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..++++++|+|+++. -...+ ..+.+.+......-...|+++|+||+|+..
T Consensus 234 -erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 234 -ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred -HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 345899999999843 11122 445555554322223458999999999875
No 68
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.68 E-value=1.3e-15 Score=116.92 Aligned_cols=152 Identities=13% Similarity=0.039 Sum_probs=92.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
....+|+++|.+|+|||||+++++..........+.+.+... ..+... ....+.+|||||...+. .
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~-----------~ 77 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKFG-----------G 77 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEE--EEEEECCeEEEEEEEECCCchhhh-----------h
Confidence 556899999999999999999987665422211111112111 122221 23578899999976532 2
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhhhh
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKKG 172 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~~~ 172 (221)
.....++.++++++|+|++++.+... ..|++.+.+... ..|+++|+||+|+.... ...+ .+.+...-.++..|
T Consensus 78 ~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~S 153 (219)
T PLN03071 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEIS 153 (219)
T ss_pred hhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEEEcC
Confidence 22245678899999999996655444 466666665422 34899999999975321 1122 33333233455666
Q ss_pred HHHHHhHHHHHHh
Q 027618 173 ATKLRDQQFEVDS 185 (221)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (221)
+....++.+.+..
T Consensus 154 Ak~~~~i~~~f~~ 166 (219)
T PLN03071 154 AKSNYNFEKPFLY 166 (219)
T ss_pred CCCCCCHHHHHHH
Confidence 6666666655554
No 69
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.68 E-value=9.9e-16 Score=112.13 Aligned_cols=150 Identities=18% Similarity=0.146 Sum_probs=87.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|++|+|||||++++++....... .+. +.......... .+ ..+.+|||||..++.. ..
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~-~~t--~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~-----------~~ 65 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDY-DPT--IEDSYRKQIEI-DGEVCLLDILDTAGQEEFSA-----------MR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccc-CCc--hhhhEEEEEEE-CCEEEEEEEEECCCcccchH-----------HH
Confidence 37999999999999999999987653221 111 11111122222 33 4677899999765321 12
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhH
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGA 173 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~ 173 (221)
...+..++++++|++++++-+... ..+...+.+.... ...|+++|+||+|+.... .....++........+..++
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 144 (164)
T smart00173 66 DQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSA 144 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeec
Confidence 234556799999999985544333 4445555544322 234899999999986421 12333444432233455555
Q ss_pred HHHHhHHHHHHh
Q 027618 174 TKLRDQQFEVDS 185 (221)
Q Consensus 174 ~~~~~~~~~~~~ 185 (221)
....++.+.++.
T Consensus 145 ~~~~~i~~l~~~ 156 (164)
T smart00173 145 KERVNVDEAFYD 156 (164)
T ss_pred CCCCCHHHHHHH
Confidence 555555554443
No 70
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.67 E-value=1.5e-15 Score=111.34 Aligned_cols=117 Identities=19% Similarity=0.168 Sum_probs=75.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
..+|+++|++|+|||||++++++....... ....+.......+.. .+ ..+.++||||... ....
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~ 68 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDS--KSTIGVEFATRSIQI-DGKTIKAQIWDTAGQER-----------YRAI 68 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHHH
Confidence 368999999999999999999987653222 122222222333333 33 3678999999542 1122
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....++.++++++|+|+.+..+... ..|+..+.+.... ..|+++|+||.|+..
T Consensus 69 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 69 TSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADS--NIVIMLVGNKSDLRH 122 (165)
T ss_pred HHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 2345567899999999985544443 4555555554322 248999999999764
No 71
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.67 E-value=8.3e-15 Score=110.42 Aligned_cols=125 Identities=17% Similarity=0.260 Sum_probs=78.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
....+|+++|++|+|||||+|+|++...........+.|....... .+..+.+|||||+....... .....+...
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~-~~~~~~~~~ 96 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSK-EEKEKWQKL 96 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCc-hHHHHHHHH
Confidence 3558899999999999999999998652212112233343333222 24689999999986532221 112222222
Q ss_pred HH---hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IG---MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~---~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+. .....++++++|++...+.+..+..+.+.+... ..|+++++||+|...
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~-----~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEY-----GIPVLIVLTKADKLK 149 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHc-----CCcEEEEEECcccCC
Confidence 22 223445788888988867776665555555432 236899999999876
No 72
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.67 E-value=1.7e-15 Score=110.79 Aligned_cols=118 Identities=19% Similarity=0.110 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
.+|+++|++|+|||||+|++++...........+.+.......... ....+.+|||||... .......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~ 69 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDD-TTVKFEIWDTAGQER-----------YRSLAPM 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCchHH-----------HHHHHHH
Confidence 6899999999999999999998876432211212111111222221 234688999999532 1122234
Q ss_pred hcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.+..+|++++|+|+++.-+... ..++..+..... ...|+++++||.|...
T Consensus 70 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~ 120 (163)
T cd01860 70 YYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLES 120 (163)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 5567899999999984433322 556666665532 2347999999999763
No 73
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.67 E-value=1.4e-15 Score=110.12 Aligned_cols=117 Identities=20% Similarity=0.145 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
.+|+++|++|+|||||+|.+++...........+.+.......... ....+.++|+||... .......
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~-----------~~~~~~~ 68 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDG-KTVKLQIWDTAGQER-----------FRSITPS 68 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECC-EEEEEEEEecCChHH-----------HHHHHHH
Confidence 3799999999999999999998876443222222222221112111 235688999999642 2223345
Q ss_pred hcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (221)
.++.+|++++|++++++-+... ..++..+..... ...|+++++||+|..
T Consensus 69 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~ 118 (159)
T cd00154 69 YYRGAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLE 118 (159)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEccccc
Confidence 5677899999999985332222 445555555421 234899999999986
No 74
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.67 E-value=3.2e-15 Score=110.28 Aligned_cols=119 Identities=18% Similarity=0.146 Sum_probs=76.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
..+|+++|++|+|||||++++++........ ...........+.+ .+ ..+.+|||||..++. . ..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-------~---~~ 68 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTE--ATIGVDFRERTVEI-DGERIKVQLWDTAGQERFR-------K---SM 68 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccc--cceeEEEEEEEEEE-CCeEEEEEEEeCCChHHHH-------H---hh
Confidence 3789999999999999999998766432211 11111222223333 33 578899999964311 1 12
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....++.+|++++|+|++++-+... ..|++.+..... ....|+++|+||+|+..
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 69 VQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLRE 123 (170)
T ss_pred HHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence 3345678899999999986555544 455555555422 22358999999999764
No 75
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.67 E-value=1.7e-15 Score=112.08 Aligned_cols=153 Identities=14% Similarity=0.119 Sum_probs=92.5
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
+.....+|+++|++|+|||||++++++...... ..|.........+ .+..+.+|||||...+ .
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~l~D~~G~~~~-----------~ 72 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDIDTI-----SPTLGFQIKTLEY-EGYKLNIWDVGGQKTL-----------R 72 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCEEEEEEECCCCHHH-----------H
Confidence 334558999999999999999999998743211 1122223334444 5778899999996531 1
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC-ChhhHHHHhcc-----cCCc
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLGR-----ECPK 167 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~-~~~~~~~~l~~-----~~~~ 167 (221)
......+..+|++++|+|+.++.+... ..++..+... ......|+++|+||+|+... ....+.+++.. ....
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 151 (173)
T cd04154 73 PYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQE-ERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWR 151 (173)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceE
Confidence 223345678899999999985533332 2333333221 11124589999999998642 12445555531 1123
Q ss_pred hhhhhHHHHHhHHHHHHh
Q 027618 168 PLKKGATKLRDQQFEVDS 185 (221)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~ 185 (221)
.+..|+....++.+.++.
T Consensus 152 ~~~~Sa~~g~gi~~l~~~ 169 (173)
T cd04154 152 IQPCSAVTGEGLLQGIDW 169 (173)
T ss_pred EEeccCCCCcCHHHHHHH
Confidence 455666666666655543
No 76
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.67 E-value=1.3e-15 Score=111.35 Aligned_cols=116 Identities=18% Similarity=0.196 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|++|||||||++++++....... .+ .+.......... .+ ..+.+|||||...+. ...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~-~~--t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKY-DP--TIEDSYRKQIEV-DGQQCMLEILDTAGTEQFT-----------AMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc-CC--chhhhEEEEEEE-CCEEEEEEEEECCCccccc-----------hHH
Confidence 68999999999999999999976543221 11 111111222333 33 456789999976532 122
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
...++.+|++++|+++++..+... ..+++.+.+.... ...|+++|+||+|...
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~ 120 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLED 120 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 234567899999999986544443 4555666554222 2358999999999754
No 77
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.67 E-value=3.3e-15 Score=112.33 Aligned_cols=152 Identities=13% Similarity=0.096 Sum_probs=88.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
.+|+++|++|+|||||++++++........ ..............+. ....+.||||||... +.....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~ 68 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNF-IATVGIDFRNKVVTVDGVKVKLQIWDTAGQER-----------FRSVTH 68 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCc-CCcccceeEEEEEEECCEEEEEEEEeCCCcHH-----------HHHhhH
Confidence 379999999999999999998876532211 1111111111112220 224688999999532 222233
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT 174 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~ 174 (221)
..++.+|++++|+|++++.+... ..|+..+.+.... ..|+++|+||.|+.... ......+........+..++.
T Consensus 69 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~ 146 (191)
T cd04112 69 AYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQE--DVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAK 146 (191)
T ss_pred HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 45677899999999986544433 5566666665332 34899999999985321 122333333222234455555
Q ss_pred HHHhHHHHHHh
Q 027618 175 KLRDQQFEVDS 185 (221)
Q Consensus 175 ~~~~~~~~~~~ 185 (221)
...++.+.+..
T Consensus 147 ~~~~v~~l~~~ 157 (191)
T cd04112 147 TGLNVELAFTA 157 (191)
T ss_pred CCCCHHHHHHH
Confidence 55555554444
No 78
>PLN03110 Rab GTPase; Provisional
Probab=99.67 E-value=4e-15 Score=114.00 Aligned_cols=153 Identities=14% Similarity=0.102 Sum_probs=90.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
...+|+++|++|+|||||++++++.........+ .........+.+. ....+.+|||||... +...
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t--~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~-----------~~~~ 77 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKST--IGVEFATRTLQVEGKTVKAQIWDTAGQER-----------YRAI 77 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--eeEEEEEEEEEECCEEEEEEEEECCCcHH-----------HHHH
Confidence 4589999999999999999999987653222111 1112222233331 224788999999542 2233
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG 172 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~ 172 (221)
....++.++++++|+|+++..+... ..|+..+...... ..|+++|+||+|+.... ......+........+..+
T Consensus 78 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~S 155 (216)
T PLN03110 78 TSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADS--NIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETS 155 (216)
T ss_pred HHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCC--CCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEe
Confidence 3455678899999999986554444 4566666654332 34899999999975321 1222333222222344455
Q ss_pred HHHHHhHHHHHHh
Q 027618 173 ATKLRDQQFEVDS 185 (221)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (221)
+.....+.+.++.
T Consensus 156 A~~g~~v~~lf~~ 168 (216)
T PLN03110 156 ALEATNVEKAFQT 168 (216)
T ss_pred CCCCCCHHHHHHH
Confidence 5544455554444
No 79
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.66 E-value=1.2e-15 Score=113.75 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=78.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
+...+|+++|.+|+|||||+++++........ .+ |.... ...+... ....+.+|||+|...+.
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~-~p---T~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~----------- 67 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENY-VP---TVFENYTASFEIDTQRIELSLWDTSGSPYYD----------- 67 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCcc-CC---ceeeeeEEEEEECCEEEEEEEEECCCchhhH-----------
Confidence 34589999999999999999999877653221 11 11111 1122221 23468899999964321
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (221)
......++.+|++++|+|++++.+... ..|++.+++... ..|+++|+||.|+.
T Consensus 68 ~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~ 122 (182)
T cd04172 68 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR 122 (182)
T ss_pred hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhhh
Confidence 223356788999999999997766655 467777777532 34899999999974
No 80
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.66 E-value=2.2e-15 Score=109.97 Aligned_cols=115 Identities=22% Similarity=0.159 Sum_probs=72.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee---CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
+|+++|++|+|||||++++++....... ..............+. ....+.+|||||..+ .....
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~ 68 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDY--KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-----------FDAIT 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC--CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-----------HHHhH
Confidence 6899999999999999999987543211 1111112112222221 245788999999532 12223
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+++.+|++++|++++++-+... ..|+..+.... ...|+++|+||.|+..
T Consensus 69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~---~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC---GDIPMVLVQTKIDLLD 120 (162)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhccc
Confidence 445678899999999985443333 34555554432 2348999999999865
No 81
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.66 E-value=1.2e-15 Score=114.53 Aligned_cols=150 Identities=17% Similarity=0.177 Sum_probs=88.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
+|+++|.+|+|||||++++++....... .+. +.......... .+. .+.+|||||...+. ....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~-~~t--~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETY-DPT--IEDSYRKQVVV-DGQPCMLEVLDTAGQEEYT-----------ALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccC-CCc--hHhhEEEEEEE-CCEEEEEEEEECCCchhhH-----------HHHH
Confidence 4899999999999999999876542211 111 11111112223 333 47889999965321 1222
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhhhhH
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKKGA 173 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~~~ 173 (221)
..++.+|++++|+|+++..+... ..+++.+.+.... ....|+++|+||+|+..... ....++........+..++
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 145 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASA 145 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecC
Confidence 45567799999999986554444 5666666655331 13458999999999853211 1223333322223455566
Q ss_pred HHHHhHHHHHHh
Q 027618 174 TKLRDQQFEVDS 185 (221)
Q Consensus 174 ~~~~~~~~~~~~ 185 (221)
....++.+.++.
T Consensus 146 k~~~~v~~l~~~ 157 (190)
T cd04144 146 KTNVNVERAFYT 157 (190)
T ss_pred CCCCCHHHHHHH
Confidence 655566655554
No 82
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.66 E-value=2e-15 Score=111.58 Aligned_cols=150 Identities=15% Similarity=0.093 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|..|+|||||++.+.+...........+ ......+.. .+ ..+.+|||||...+. ...
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~---~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~l~ 67 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIE---DAYKQQARI-DNEPALLDILDTAGQAEFT-----------AMR 67 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCccc---ceEEEEEEE-CCEEEEEEEEeCCCchhhH-----------HHh
Confidence 6899999999999999999987765322111111 111112333 33 467899999975421 223
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhH
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGA 173 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~ 173 (221)
..++..+|++++|++++++.+... ..|.+.+.+... ....|+++|+||+|+.... .....++.++....++..++
T Consensus 68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa 146 (172)
T cd04141 68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSA 146 (172)
T ss_pred HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEec
Confidence 345677899999999997777666 345555655422 2235899999999975421 12333343322234555666
Q ss_pred HHHHhHHHHHHh
Q 027618 174 TKLRDQQFEVDS 185 (221)
Q Consensus 174 ~~~~~~~~~~~~ 185 (221)
....++.+.++.
T Consensus 147 ~~~~~v~~~f~~ 158 (172)
T cd04141 147 ALRHYIDDAFHG 158 (172)
T ss_pred CCCCCHHHHHHH
Confidence 666666666665
No 83
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.66 E-value=1.6e-15 Score=112.74 Aligned_cols=113 Identities=15% Similarity=0.087 Sum_probs=76.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|.+|+|||||++++++....... .+ |.... ...+... ....+.+|||||...+. ...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~-~~---t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~-----------~~~ 66 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETY-VP---TVFENYTASFEIDEQRIELSLWDTSGSPYYD-----------NVR 66 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCc-CC---ceEEEEEEEEEECCEEEEEEEEECCCchhhh-----------hcc
Confidence 57999999999999999999987653221 11 11111 1122231 23467899999965322 122
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (221)
...++.+|++++|+|++++-+... ..|+..+++..+ ..|+++|+||.|+.
T Consensus 67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~ 118 (178)
T cd04131 67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLR 118 (178)
T ss_pred hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhh
Confidence 346788899999999987766665 467777776532 34899999999974
No 84
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.66 E-value=2.1e-15 Score=113.94 Aligned_cols=117 Identities=21% Similarity=0.208 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCc---ceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGV---TSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
.+|+++|++|+|||||+|+|+|...+..+....+. |.... .+..+....+.+|||||+.+.....+. +...
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~~~~~----~l~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAFPPDD----YLEE 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcccCCHHH----HHHH
Confidence 67999999999999999999996654333222221 21111 111112357899999999865433222 2221
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+..+|++++|. +.+++..+..+++.+++. + .|+++|+||+|+..
T Consensus 76 --~~~~~~d~~l~v~--~~~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~ 121 (197)
T cd04104 76 --MKFSEYDFFIIIS--STRFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDL 121 (197)
T ss_pred --hCccCcCEEEEEe--CCCCCHHHHHHHHHHHHh-C----CCEEEEEecccchh
Confidence 2346678888874 347888999999988875 3 36899999999875
No 85
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.66 E-value=1.4e-15 Score=112.17 Aligned_cols=117 Identities=21% Similarity=0.133 Sum_probs=73.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
+|+++|.+|+|||||++++++........ + .............. ....+.+|||||...+ ......
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~-~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~~~~~ 68 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYK-A-TIGVDFEMERFEILGVPFSLQLWDTAGQERF-----------KCIAST 68 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCC-C-ceeeEEEEEEEEECCEEEEEEEEeCCChHHH-----------HhhHHH
Confidence 68999999999999999999876532211 1 11112221222221 2346889999996532 123345
Q ss_pred hcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.++.+|++++|+|++++.+... ..|++.+.+.... ...|+++|+||.|+..
T Consensus 69 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 69 YYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDP-SSVLLFLVGTKKDLSS 120 (170)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEChhcCc
Confidence 5778899999999985433332 4566555443222 2247899999999754
No 86
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.66 E-value=4e-15 Score=125.02 Aligned_cols=124 Identities=18% Similarity=0.125 Sum_probs=82.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
.|+|+|.++||||||+|+|++..... .....+|..+....+.+ .+..++|+||||+.+.......+..++.+.+
T Consensus 161 dV~LVG~PNAGKSTLln~Ls~akpkI--adypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLrhi--- 234 (500)
T PRK12296 161 DVGLVGFPSAGKSSLISALSAAKPKI--ADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLRHI--- 234 (500)
T ss_pred eEEEEEcCCCCHHHHHHHHhcCCccc--cccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHHHH---
Confidence 68999999999999999999875422 23345677777777777 7788999999999754333333444444443
Q ss_pred cCCCcEEEEEEeCCCCC----CHHH-HHHHHHHHHHhc---------ccccccEEEEEecCCCCC
Q 027618 101 KDGIHAVLVVFSVRSRF----SQEE-EAALHSLQTLFG---------KKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 101 ~~~~~~il~v~~~~~~~----~~~~-~~~~~~l~~~~~---------~~~~~~~ivv~tk~D~~~ 151 (221)
..++++++|+|+++.. ...+ ..+.+.|..... .-...|.+||+||+|...
T Consensus 235 -eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~d 298 (500)
T PRK12296 235 -ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPD 298 (500)
T ss_pred -HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchh
Confidence 4459999999987311 1112 223334433321 112458999999999864
No 87
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.66 E-value=3.2e-15 Score=112.39 Aligned_cols=117 Identities=18% Similarity=0.240 Sum_probs=84.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (221)
..+|+++|+.++|||||+++|++..... ......+.|.........+ .+..+.++||||+.+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~--- 77 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD--- 77 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHH---
Confidence 3789999999999999999998642100 0011345566555555555 677899999999742
Q ss_pred CchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+...+...+..+|++++|+|+......++...+..+.+. +. +++++++||+|+..
T Consensus 78 --------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~---~~iIvviNK~D~~~ 132 (195)
T cd01884 78 --------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-GV---PYIVVFLNKADMVD 132 (195)
T ss_pred --------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CcEEEEEeCCCCCC
Confidence 333334555678999999999878888888888877664 32 24789999999864
No 88
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.66 E-value=2e-15 Score=113.00 Aligned_cols=148 Identities=14% Similarity=0.101 Sum_probs=88.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
.+|+++|++|+|||||++++++........ .|.... ...+... ....+.+|||||...+ ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~----~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYV----PTVFENYVTNIQGPNGKIIELALWDTAGQEEY-----------DRL 65 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCC----CeeeeeeEEEEEecCCcEEEEEEEECCCchhH-----------HHH
Confidence 379999999999999999999876532211 121111 1122221 2236789999995432 122
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCC-------hhhHHHHhcccCC-
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELEDN-------DETLEDYLGRECP- 166 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-------~~~~~~~l~~~~~- 166 (221)
....+..+|++++|+|++++.+.... .|+..+... .. ..|+++|+||.|+.... .....++......
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~--~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~ 142 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CP--GTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAF 142 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CC--CCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCc
Confidence 23456788999999999865554442 355545432 22 34899999999975421 2233444432222
Q ss_pred chhhhhHHHHHhHHHHHHh
Q 027618 167 KPLKKGATKLRDQQFEVDS 185 (221)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~~ 185 (221)
..+..++.....+.+.+..
T Consensus 143 ~~~e~Sa~~~~~v~~~f~~ 161 (187)
T cd04132 143 AYLECSAKTMENVEEVFDT 161 (187)
T ss_pred EEEEccCCCCCCHHHHHHH
Confidence 4455666555555555554
No 89
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.66 E-value=3.8e-15 Score=121.79 Aligned_cols=124 Identities=25% Similarity=0.278 Sum_probs=96.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
..+.+++++|+|++|||||+|+|++....... ...|+|+......+.. +|.++.++||.|+-++...-+. .=..-
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVT-dI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE~---iGIeR 289 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVT-DIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVER---IGIER 289 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEec-CCCCCccceEEEEEEE-CCEEEEEEecCCcccCccHHHH---HHHHH
Confidence 35689999999999999999999999875553 5678899999899888 9999999999999875433332 22222
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.+.....+|.+|+|+|++...+..+...++.+ ....|+++|.||.|+..
T Consensus 290 s~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~------~~~~~~i~v~NK~DL~~ 338 (454)
T COG0486 290 AKKAIEEADLVLFVLDASQPLDKEDLALIELL------PKKKPIIVVLNKADLVS 338 (454)
T ss_pred HHHHHHhCCEEEEEEeCCCCCchhhHHHHHhc------ccCCCEEEEEechhccc
Confidence 33445677999999999977777777776611 22347999999999886
No 90
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.66 E-value=3.9e-15 Score=110.32 Aligned_cols=149 Identities=15% Similarity=0.083 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
.+|+++|.+|+|||||+.+++..........+.+... ...+... ....+.+|||+|...+.... .
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~---~~~~~~~~~~v~l~i~Dt~G~~~~~~~~-----------~ 67 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---SANVSVDGNTVNLGLWDTAGQEDYNRLR-----------P 67 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee---EEEEEECCEEEEEEEEECCCCccccccc-----------h
Confidence 5799999999999999999997665322111111111 1122221 23568899999987654322 2
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCC-------------hhhHHHHhcc
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-------------DETLEDYLGR 163 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-------------~~~~~~~l~~ 163 (221)
..++.++++++|+|++++-+... ..|+..++...+ ..|+++|+||+|+.+.. .....++.+.
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~ 144 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP---NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ 144 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH
Confidence 46688899999999997777666 367877766532 35899999999975411 1223344432
Q ss_pred cCC-chhhhhHHHHHhHHHHHHh
Q 027618 164 ECP-KPLKKGATKLRDQQFEVDS 185 (221)
Q Consensus 164 ~~~-~~l~~~~~~~~~~~~~~~~ 185 (221)
... .++..++....++.+.++.
T Consensus 145 ~~~~~~~E~SAk~~~nV~~~F~~ 167 (176)
T cd04133 145 IGAAAYIECSSKTQQNVKAVFDA 167 (176)
T ss_pred cCCCEEEECCCCcccCHHHHHHH
Confidence 222 3455666666666666554
No 91
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.66 E-value=4.3e-15 Score=110.93 Aligned_cols=152 Identities=14% Similarity=0.077 Sum_probs=88.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe--eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
..+|+++|++|+|||||++++++...... ..+.+.+. ....+.. ..+..+.+|||||...+ ...
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~--~~~~~~~~~~~~~~l~l~Dt~G~~~~-----------~~~ 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNT--EKIKVSLGNSKGITFHFWDVGGQEKL-----------RPL 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccce--eEEEeeccCCCceEEEEEECCCcHhH-----------HHH
Confidence 37899999999999999999987664322 11111111 1112211 13467899999996421 122
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC-ChhhHHHHhcccC------Cch
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLGREC------PKP 168 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~-~~~~~~~~l~~~~------~~~ 168 (221)
+..++..+|++++|+|+++.-+... ..++..+.+.... ...|+++|+||+|.... ....++.++.-.. ...
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSEN-QGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHV 147 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhc-CCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEE
Confidence 3345677899999999885433222 2344444433222 23589999999997642 1233444443100 113
Q ss_pred hhhhHHHHHhHHHHHHh
Q 027618 169 LKKGATKLRDQQFEVDS 185 (221)
Q Consensus 169 l~~~~~~~~~~~~~~~~ 185 (221)
+..++....++.+.++.
T Consensus 148 ~~~SA~~~~gi~~l~~~ 164 (183)
T cd04152 148 QPACAIIGEGLQEGLEK 164 (183)
T ss_pred EEeecccCCCHHHHHHH
Confidence 44666666667666665
No 92
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.66 E-value=3.5e-15 Score=108.74 Aligned_cols=150 Identities=18% Similarity=0.165 Sum_probs=86.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|++|+|||||+|++++....... .+. ........... .+ ..+.+|||||...+. ...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~-~~t--~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEY-DPT--IEDSYRKQVVI-DGETCLLDILDTAGQEEYS-----------AMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCc-CCc--chheEEEEEEE-CCEEEEEEEEECCCCcchH-----------HHH
Confidence 58999999999999999999987643221 111 11111222233 33 346789999965421 222
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhhhhHH
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKKGAT 174 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~~~~~ 174 (221)
...+..++++++|++++++-+... ..++..+.+.... ...|+++|+||+|..... .....++........+..++.
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDS-DDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAK 145 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCC
Confidence 235566799999999985444333 3455555544222 234899999999986421 122333333222233445555
Q ss_pred HHHhHHHHHHh
Q 027618 175 KLRDQQFEVDS 185 (221)
Q Consensus 175 ~~~~~~~~~~~ 185 (221)
...++.+.++.
T Consensus 146 ~~~gi~~l~~~ 156 (162)
T cd04138 146 TRQGVEEAFYT 156 (162)
T ss_pred CCCCHHHHHHH
Confidence 55555554443
No 93
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.65 E-value=2e-15 Score=110.42 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=87.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
+|+++|++|+|||||++.+++......... ..........+.. .+ ..+.+|||||...+. ....
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~-----------~~~~ 67 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHIS--TIGVDFKMKTIEV-DGIKVRIQIWDTAGQERYQ-----------TITK 67 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCC--ceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhHH-----------hhHH
Confidence 689999999999999999987765322111 1111222223333 33 467899999964321 2233
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT 174 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~ 174 (221)
.++..+|++++|+|++++-+... ..|++.+..... ...|+++|.||.|+.... ......+.+.....++..++.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~ 145 (161)
T cd04117 68 QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP--EGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSAC 145 (161)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence 45678899999999986544444 455555554422 234899999999975422 122233332222234445555
Q ss_pred HHHhHHHHHHh
Q 027618 175 KLRDQQFEVDS 185 (221)
Q Consensus 175 ~~~~~~~~~~~ 185 (221)
.-.++.+.+..
T Consensus 146 ~~~~v~~~f~~ 156 (161)
T cd04117 146 TNSNIKESFTR 156 (161)
T ss_pred CCCCHHHHHHH
Confidence 54555554443
No 94
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.65 E-value=1.9e-15 Score=113.03 Aligned_cols=114 Identities=19% Similarity=0.178 Sum_probs=80.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccc--------------CCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCc
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS 86 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~ 86 (221)
+|+++|.+|+|||||+|+|++........ ...+.+.........+ .+..+.++||||..++
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~---- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDF---- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHH----
Confidence 48999999999999999999876543221 0123344444455555 6778999999997532
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 87 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
......+++.+|++++|+|+.+.........+..+.. ...|+++|+||+|+..
T Consensus 76 -------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 76 -------SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-----GGLPIIVAINKIDRVG 128 (189)
T ss_pred -------HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-----CCCCeEEEEECCCCcc
Confidence 1222334456799999999987777666666665554 2348999999999885
No 95
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.65 E-value=3.5e-15 Score=108.74 Aligned_cols=117 Identities=14% Similarity=0.102 Sum_probs=73.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
.+|+++|++|+|||||+|++++....... ....+.........+. ....+.+|||||...+ .....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----------~~~~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKH--ESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY-----------HALGP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc--CCccceeEEEEEEEECCEEEEEEEEECCchHHH-----------HHhhH
Confidence 37899999999999999999987653221 1111122222223221 2236889999995421 12223
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+..+|++++|+|.++.-+... ..+++.+...... ..|+++++||+|...
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~ 119 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLER 119 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 34567899999999985544333 3455555554332 348999999999874
No 96
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.65 E-value=2.6e-15 Score=110.67 Aligned_cols=151 Identities=13% Similarity=0.121 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|++|+|||||+|++++.......... ...........+ .+ ..+.+|||||...+ ....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~-----------~~~~ 66 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKAT--IGADFLTKEVTV-DDKLVTLQIWDTAGQERF-----------QSLG 66 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCc--cceEEEEEEEEE-CCEEEEEEEEeCCChHHH-----------HhHH
Confidence 37999999999999999999987653222111 111222223333 33 34679999996432 1222
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCCC---hhhHHHHhcccC-Cchhh
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELEDN---DETLEDYLGREC-PKPLK 170 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~-~~~l~ 170 (221)
...++.+|++++|+|++++.+... ..|.+.+...... ....|+++|+||+|...+. ......+.+... ...+.
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFE 146 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEE
Confidence 345677899999999985544333 2344443333221 1234899999999987321 233444554321 23444
Q ss_pred hhHHHHHhHHHHHH
Q 027618 171 KGATKLRDQQFEVD 184 (221)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (221)
.++....++.+.++
T Consensus 147 ~Sa~~~~gv~~l~~ 160 (172)
T cd01862 147 TSAKEAINVEQAFE 160 (172)
T ss_pred EECCCCCCHHHHHH
Confidence 45544444444444
No 97
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.65 E-value=3.2e-15 Score=112.69 Aligned_cols=116 Identities=18% Similarity=0.251 Sum_probs=78.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCc-ccccc-------------cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRR-AFKSR-------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~-~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (221)
.++|+++|.+++|||||++++++.. .+... ....+.+.......+.+ .+..+.+|||||..++
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~~-- 78 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHADF-- 78 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHHH--
Confidence 3789999999999999999998631 11111 01133444445455666 7788999999997642
Q ss_pred CchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
...+..+++.+|++++|+|+.+........++..+.. . ..|+++|+||+|+..
T Consensus 79 ---------~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~---~--~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 79 ---------GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE---L--GLKPIVVINKIDRPD 131 (194)
T ss_pred ---------HHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH---c--CCCEEEEEECCCCCC
Confidence 1233345667799999999986555544444444332 1 237899999999864
No 98
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.65 E-value=3e-15 Score=125.96 Aligned_cols=122 Identities=25% Similarity=0.286 Sum_probs=83.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+.+|+++|++|+|||||+|+|++....... ...+.|.......+.+ .+..+.++||||+.++... +...-....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~~~---ie~~gi~~~ 288 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVT-DIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETDDE---VEKIGIERS 288 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCccH---HHHHHHHHH
Confidence 3479999999999999999999997642222 2344565555556666 7888999999998753211 111111122
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
...+..+|++++|+|++++.+..+...+.. ....|+++|+||+|+..
T Consensus 289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 289 REAIEEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTG 335 (449)
T ss_pred HHHHHhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccc
Confidence 234567899999999987766655433322 11248999999999875
No 99
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.65 E-value=6.7e-15 Score=112.62 Aligned_cols=113 Identities=24% Similarity=0.167 Sum_probs=76.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
.+|+++|.+|+|||||++++++..+... ..|.........+ ....+.+|||||...+.. ....
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~-----~~Tig~~~~~~~~-~~~~l~iwDt~G~e~~~~-----------l~~~ 63 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDT-----VSTVGGAFYLKQW-GPYNISIWDTAGREQFHG-----------LGSM 63 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCC-----CCccceEEEEEEe-eEEEEEEEeCCCcccchh-----------hHHH
Confidence 3789999999999999999998775321 1222223333334 456789999999764321 1223
Q ss_pred hcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.++.+|++++|+|++++.+... ..++..+.+.... ..|+++|+||+|+..
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~--~~piIlVgNK~DL~~ 114 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANE--DCLFAVVGNKLDLTE 114 (220)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccccc
Confidence 4678899999999997665555 3445555443222 348999999999754
No 100
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.65 E-value=5.1e-15 Score=109.08 Aligned_cols=154 Identities=15% Similarity=0.077 Sum_probs=92.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
...+|+++|++|+|||||++++++......... ..........+.+ .+ ..+.+|||||... ...
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~ 69 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFH--TIGVEFLNKDLEV-DGHFVTLQIWDTAGQER-----------FRS 69 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCC--ceeeEEEEEEEEE-CCeEEEEEEEeCCChHH-----------HHH
Confidence 348999999999999999999997665332211 1111211222333 33 3577899999542 222
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCCC--hhhHHHHhcccC-Cchh
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELEDN--DETLEDYLGREC-PKPL 169 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~-~~~l 169 (221)
.....++.+|++++|++++++-+... ..|...+...... ....|+++|+||.|+.... ...++++.++.. ...+
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 149 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYF 149 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEE
Confidence 33345678899999999986544333 4455555544321 1234899999999975321 244566665422 2345
Q ss_pred hhhHHHHHhHHHHHHh
Q 027618 170 KKGATKLRDQQFEVDS 185 (221)
Q Consensus 170 ~~~~~~~~~~~~~~~~ 185 (221)
..++....++.++++.
T Consensus 150 e~Sa~~~~~v~~~~~~ 165 (170)
T cd04116 150 ETSAKDATNVAAAFEE 165 (170)
T ss_pred EEECCCCCCHHHHHHH
Confidence 5566555555555543
No 101
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.65 E-value=3e-15 Score=117.96 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=84.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccc----------------cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFK----------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (221)
.|+++|++++|||||+++|+...... ......+.|.........| .+..+.++||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df~- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDFT- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHHH-
Confidence 47999999999999999997432110 0112346677777778888 88999999999976522
Q ss_pred CchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
..+..++..+|++++|+|+.+.....+...++.+.+. + .|+++++||+|+...
T Consensus 79 ----------~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-~----~p~ivviNK~D~~~a 131 (270)
T cd01886 79 ----------IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-N----VPRIAFVNKMDRTGA 131 (270)
T ss_pred ----------HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 2233455666999999999878888887777776653 2 378999999998753
No 102
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.65 E-value=1e-14 Score=112.81 Aligned_cols=88 Identities=20% Similarity=0.267 Sum_probs=61.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
+|+++|++|+|||||+|+|++...... .....|..+....+.+ .+..+.++||||+.+..........++ ...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~--~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~----l~~ 74 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVA--AYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQV----IAV 74 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccc--CCCCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHH----HHh
Confidence 689999999999999999999764222 2334455565666666 788999999999875432222222222 334
Q ss_pred cCCCcEEEEEEeCCC
Q 027618 101 KDGIHAVLVVFSVRS 115 (221)
Q Consensus 101 ~~~~~~il~v~~~~~ 115 (221)
++.+|++++|+|+++
T Consensus 75 ~~~ad~il~V~D~t~ 89 (233)
T cd01896 75 ARTADLILMVLDATK 89 (233)
T ss_pred hccCCEEEEEecCCc
Confidence 567799999999863
No 103
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.65 E-value=3.3e-15 Score=112.39 Aligned_cols=114 Identities=20% Similarity=0.210 Sum_probs=72.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceee--EEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC--EMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
.+|+++|++|+|||||++++++........ ..|... ....+.. .+ ..+.+|||||...+. .
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~---~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~-----------~ 65 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPY---QNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERYE-----------A 65 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCc---ccceeeEEEEEEEEE-CCEEEEEEEEECCCchhhh-----------h
Confidence 379999999999999999999876532111 112211 1122333 33 346699999975422 1
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.....+..+|++++|+|+++..+... ..|++.++.. . ...|+++|+||+|+..
T Consensus 66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~--~~~piilv~nK~Dl~~ 119 (193)
T cd04118 66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL-E--EHCKIYLCGTKSDLIE 119 (193)
T ss_pred hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc-C--CCCCEEEEEEcccccc
Confidence 12235567899999999985544333 4566666553 1 1348999999999764
No 104
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.65 E-value=5.3e-15 Score=112.87 Aligned_cols=153 Identities=16% Similarity=0.079 Sum_probs=90.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
..+|+++|++|+|||||++++++....... ............+.... ...+.+|||||...+ ...
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~--~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~-----------~~~ 68 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVS--DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF-----------RSI 68 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CceeceEEEEEEEEECCCCEEEEEEEeCCcchhH-----------HHH
Confidence 378999999999999999999987653221 11111222222232212 246889999996431 122
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG 172 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~ 172 (221)
....+..+|++++|+|++++-+... ..|++.+.+.... ...++++|+||.|+.... ......+.+.....++..+
T Consensus 69 ~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 147 (211)
T cd04111 69 TRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETS 147 (211)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEe
Confidence 2345677899999999986544443 4555555554332 234688999999976421 2233444443222344455
Q ss_pred HHHHHhHHHHHHh
Q 027618 173 ATKLRDQQFEVDS 185 (221)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (221)
+....++.+.++.
T Consensus 148 ak~g~~v~e~f~~ 160 (211)
T cd04111 148 ARTGDNVEEAFEL 160 (211)
T ss_pred CCCCCCHHHHHHH
Confidence 5555555555544
No 105
>PLN03108 Rab family protein; Provisional
Probab=99.64 E-value=9.4e-15 Score=111.47 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=89.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
..+|+++|++|+|||||++++++.........+.+.+. ....+.+ .+ ..+.+|||||...+ ...
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~--~~~~i~~-~~~~i~l~l~Dt~G~~~~-----------~~~ 71 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF--GARMITI-DNKPIKLQIWDTAGQESF-----------RSI 71 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceE--EEEEEEE-CCEEEEEEEEeCCCcHHH-----------HHH
Confidence 47999999999999999999998765332211111111 1122223 33 35779999995421 122
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG 172 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~ 172 (221)
....+..+|++++|+|+++.-+... ..|+..+..... ...|+++|+||+|+.... ....+++.++.....+..+
T Consensus 72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 149 (210)
T PLN03108 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 149 (210)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEe
Confidence 2344567899999999985444333 355555544322 234899999999976421 2334455543223344455
Q ss_pred HHHHHhHHHHHHh
Q 027618 173 ATKLRDQQFEVDS 185 (221)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (221)
+..-..+.+.++.
T Consensus 150 a~~~~~v~e~f~~ 162 (210)
T PLN03108 150 AKTAQNVEEAFIK 162 (210)
T ss_pred CCCCCCHHHHHHH
Confidence 5555555555554
No 106
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.64 E-value=2.6e-15 Score=110.03 Aligned_cols=149 Identities=14% Similarity=0.090 Sum_probs=85.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|.+|+|||||+++++....... .. +.+.......... . ...+.+|||||...+. ...
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~-~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEK-YD--PTIEDSYRKQVEV-DGQQCMLEILDTAGTEQFT-----------AMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcc-cC--CcchheEEEEEEE-CCEEEEEEEEECCCcccch-----------hHH
Confidence 6899999999999999999986543211 11 1111111122333 3 3356789999976432 222
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhhhhH
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKKGA 173 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~~~ 173 (221)
...+..+|++++|++.++.-+... ..++..+.+... ....|+++|+||+|+..... ....++.++.....+..++
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 145 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSA 145 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeC
Confidence 235567799999999885544433 455555554322 22348999999999864211 2223333322223444555
Q ss_pred HHHHhHHHHHH
Q 027618 174 TKLRDQQFEVD 184 (221)
Q Consensus 174 ~~~~~~~~~~~ 184 (221)
.....+.+.+.
T Consensus 146 ~~~~~v~~~~~ 156 (164)
T cd04175 146 KAKINVNEIFY 156 (164)
T ss_pred CCCCCHHHHHH
Confidence 54444444444
No 107
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.64 E-value=2.9e-15 Score=112.35 Aligned_cols=117 Identities=21% Similarity=0.305 Sum_probs=86.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc----------------cCCCCcceeeEEEEEE--eeCCceEEEEeCCCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTV--LKDGQVVNVIDTPGL 79 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~--~~~~~~~~liDtPG~ 79 (221)
+.++|+++|+.++|||||+++|++....... ....+.|......... + .+..++++||||.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-NNRKITLIDTPGH 80 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-SSEEEEEEEESSS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-cccceeecccccc
Confidence 3589999999999999999999866532110 1123455555555555 5 8899999999996
Q ss_pred CCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.+ +...+......+|++++|+|+.+.........+..+... ..|+++++||+|+..
T Consensus 81 ~~-----------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~-----~~p~ivvlNK~D~~~ 136 (188)
T PF00009_consen 81 ED-----------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL-----GIPIIVVLNKMDLIE 136 (188)
T ss_dssp HH-----------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT-----T-SEEEEEETCTSSH
T ss_pred cc-----------eeecccceecccccceeeeeccccccccccccccccccc-----ccceEEeeeeccchh
Confidence 43 223333456778999999999988998888888887664 236999999999883
No 108
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.64 E-value=7.3e-15 Score=107.52 Aligned_cols=117 Identities=13% Similarity=0.077 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc-ccccccCCCCcceeeEEEEEEe--eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
.+|+++|++|+|||||++++.+.. .+.....+ ............. .....+.+|||||... ....
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 68 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLM-TTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-----------YSDM 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCC-ceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-----------HHHH
Confidence 378999999999999999998542 22221111 1111111122222 1335788999999532 1122
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....+..+|++++|+|+++..+... ..|++.+.... ...|+++|+||+|+..
T Consensus 69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLAD 121 (164)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence 3345677899999999985543332 45555555432 2358999999999864
No 109
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.64 E-value=2.2e-14 Score=105.24 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=72.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhc
Q 027618 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK 101 (221)
Q Consensus 22 i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (221)
|+++|++|+|||||++++++......... |.......+.+ .+..+.+|||||...+. ......+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~p----t~g~~~~~i~~-~~~~l~i~Dt~G~~~~~-----------~~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVP----TTGFNSVAIPT-QDAIMELLEIGGSQNLR-----------KYWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccc----cCCcceEEEee-CCeEEEEEECCCCcchh-----------HHHHHHH
Confidence 78999999999999999998754322111 11122233444 67789999999976432 2223456
Q ss_pred CCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 102 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 102 ~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+.+|++++|+|.+++.+... +.++..+.. .....|+++|+||.|+..
T Consensus 66 ~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~---~~~~~piilv~NK~Dl~~ 113 (164)
T cd04162 66 SGSQGLIFVVDSADSERLPLARQELHQLLQ---HPPDLPLVVLANKQDLPA 113 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHh---CCCCCcEEEEEeCcCCcC
Confidence 77899999999985543322 333333322 223458999999999764
No 110
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.64 E-value=4.5e-15 Score=108.97 Aligned_cols=129 Identities=14% Similarity=0.063 Sum_probs=78.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccc--cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSR--ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
+|+++|++|+|||||+|++++......+ .....+|.......+.+ .+..+.+|||||...+ .....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~-----------~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQESL-----------RSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChhh-----------HHHHH
Confidence 4799999999999999999875432111 11123344444455666 6789999999997542 12233
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhc
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLG 162 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~ 162 (221)
..+..+|++++|+|+.+..+... ..++..+.+... ....|+++++||+|..... ...+.+++.
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~D~~~~~~~~~~~~~~~ 133 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEA-LEGVPLLILANKQDLPDALSVEEIKEVFQ 133 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChh-hcCCCEEEEEEccccccCCCHHHHHHHhc
Confidence 45678899999999874322221 223333222111 1234899999999976521 123444444
No 111
>PLN03118 Rab family protein; Provisional
Probab=99.63 E-value=1.1e-14 Score=111.29 Aligned_cols=157 Identities=13% Similarity=0.092 Sum_probs=88.9
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHH
Q 027618 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKE 92 (221)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~ 92 (221)
++.....+|+++|++|+|||||++++++.... ...+ ..........+.+. ....+.+|||||...+.
T Consensus 9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~--~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~--------- 76 (211)
T PLN03118 9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSVE--DLAP-TIGVDFKIKQLTVGGKRLKLTIWDTAGQERFR--------- 76 (211)
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCC--CcCC-CceeEEEEEEEEECCEEEEEEEEECCCchhhH---------
Confidence 33445689999999999999999999987642 1111 11112222233331 12467899999975432
Q ss_pred HHHHHHhhcCCCcEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhcccCCc
Q 027618 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECPK 167 (221)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~ 167 (221)
......++.+|++++|+|.+++.+.... .|...+.. +......|+++|+||+|+..... ....++.......
T Consensus 77 --~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~-~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~ 153 (211)
T PLN03118 77 --TLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVEL-YSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCL 153 (211)
T ss_pred --HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCE
Confidence 1123455677999999999865444432 23333332 22222347899999999764211 2222333322223
Q ss_pred hhhhhHHHHHhHHHHHHh
Q 027618 168 PLKKGATKLRDQQFEVDS 185 (221)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~ 185 (221)
++..++.....+.+.++.
T Consensus 154 ~~e~SAk~~~~v~~l~~~ 171 (211)
T PLN03118 154 FLECSAKTRENVEQCFEE 171 (211)
T ss_pred EEEEeCCCCCCHHHHHHH
Confidence 344555555555555544
No 112
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.63 E-value=8.2e-15 Score=112.84 Aligned_cols=151 Identities=13% Similarity=0.008 Sum_probs=94.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
...+|+++|.+|+|||||++.+++..+......+.+.. . ...+.. .....+.+|||+|...+ ...
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~--~-~~~i~~~~~~v~l~iwDTaG~e~~-----------~~~ 77 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN--Y-TAGLETEEQRVELSLWDTSGSPYY-----------DNV 77 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeee--e-EEEEEECCEEEEEEEEeCCCchhh-----------HHH
Confidence 34789999999999999999998776532211111111 1 111222 02346889999995432 123
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCC---------------ChhhHHH
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED---------------NDETLED 159 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~---------------~~~~~~~ 159 (221)
...+++.+|++++|+|++++-+... ..|+..+.+... ..|+++|+||+|+... ..+..++
T Consensus 78 ~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~ 154 (232)
T cd04174 78 RPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCA 154 (232)
T ss_pred HHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHH
Confidence 3456788999999999997766654 467777776532 2489999999997431 0123445
Q ss_pred HhcccCC-chhhhhHHHHH-hHHHHHHh
Q 027618 160 YLGRECP-KPLKKGATKLR-DQQFEVDS 185 (221)
Q Consensus 160 ~l~~~~~-~~l~~~~~~~~-~~~~~~~~ 185 (221)
+.++..- .++..|+.... .+.+.+..
T Consensus 155 ~a~~~~~~~~~EtSAktg~~~V~e~F~~ 182 (232)
T cd04174 155 LAKQLGAEVYLECSAFTSEKSIHSIFRS 182 (232)
T ss_pred HHHHcCCCEEEEccCCcCCcCHHHHHHH
Confidence 5543222 35566666654 46666654
No 113
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=8.7e-15 Score=106.12 Aligned_cols=124 Identities=13% Similarity=0.090 Sum_probs=91.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
+....+|+++|..++||||||++.+-..+...-..+.|..-......+.- ...++.+|||+|.. +++.
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d-~~vrLQlWDTAGQE-----------RFrs 86 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQE-----------RFRS 86 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcC-cEEEEEEEecccHH-----------HHhh
Confidence 34458899999999999999999987665433322333333333222222 34578899999954 4556
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
.++.+++.+.++++|+|++++.+.+. .+|++.++.-.|... ..+++|+||.|+.+.
T Consensus 87 lipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 87 LIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDK 143 (221)
T ss_pred hhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccch
Confidence 77888999999999999998888777 899999988777641 258899999999873
No 114
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.63 E-value=8.1e-15 Score=106.48 Aligned_cols=115 Identities=23% Similarity=0.283 Sum_probs=75.5
Q ss_pred EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCC
Q 027618 24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDG 103 (221)
Q Consensus 24 l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (221)
++|++|+|||||+|++++...... ...+.|.......+.+ .+..+.+|||||+.++..... ...+....... +.
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVG--NWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccccc--CCCCcccccceEEEee-CCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence 589999999999999999863222 2344555555566666 667899999999976543321 11222222111 57
Q ss_pred CcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 104 IHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 104 ~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+|++++|+|+.+ .. ....++..+.+. ..|+++|+||+|...
T Consensus 75 ~d~vi~v~d~~~-~~-~~~~~~~~~~~~-----~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 75 PDLIVNVVDATN-LE-RNLYLTLQLLEL-----GLPVVVALNMIDEAE 115 (158)
T ss_pred CcEEEEEeeCCc-ch-hHHHHHHHHHHc-----CCCEEEEEehhhhcc
Confidence 899999999984 22 223333334331 348999999999865
No 115
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.63 E-value=5.2e-15 Score=108.54 Aligned_cols=117 Identities=19% Similarity=0.227 Sum_probs=71.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
+|+++|++|+|||||++++++.... ....+...... ...... .+ ..+.+|||||...... ....
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~-~~~~~t~~~~~--~~~~~~-~~~~~~~~i~D~~g~~~~~~----------~~~~ 66 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI-GEYDPNLESLY--SRQVTI-DGEQVSLEILDTAGQQQADT----------EQLE 66 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc-cccCCChHHhc--eEEEEE-CCEEEEEEEEECCCCccccc----------chHH
Confidence 4899999999999999999875432 11111111111 122222 33 3577999999874110 0111
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..++.+|++++|+|+++.-+... ..++..+.+........|+++|+||+|...
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 120 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH 120 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH
Confidence 23456799999999986544443 456666665432122358999999999753
No 116
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.63 E-value=7.4e-15 Score=107.19 Aligned_cols=116 Identities=14% Similarity=0.080 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
+|+++|++|+|||||++++++......... +|.........+ .+..+.++||||...+ ......+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~---~t~g~~~~~~~~-~~~~~~l~Dt~G~~~~-----------~~~~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV---PTVGFNVESFEK-GNLSFTAFDMSGQGKY-----------RGLWEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec---CccccceEEEEE-CCEEEEEEECCCCHhh-----------HHHHHHH
Confidence 478999999999999999998653222211 122222223334 6778999999997532 1223345
Q ss_pred cCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-ccccccEEEEEecCCCCC
Q 027618 101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-KKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~ivv~tk~D~~~ 151 (221)
+..+|++++|+|++++.+... ..++..+.+... .....|+++|+||+|+..
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 678899999999986554322 334444433211 112358999999999865
No 117
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.63 E-value=8e-15 Score=113.56 Aligned_cols=115 Identities=18% Similarity=0.235 Sum_probs=82.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccc----------------cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (221)
.|+++|+.|+|||||+++|+........ ....+.+.........| .+..+.+|||||..++.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f~- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDFI- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccchH-
Confidence 4799999999999999999865321100 11223445555666777 88899999999987642
Q ss_pred CchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
..+..+++.+|++++|+++.+........+++.+.+. + .|+++++||+|+...
T Consensus 79 ----------~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~-~----~P~iivvNK~D~~~a 131 (237)
T cd04168 79 ----------AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL-N----IPTIIFVNKIDRAGA 131 (237)
T ss_pred ----------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECccccCC
Confidence 1222344566999999999988877777777766553 2 378999999998753
No 118
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=4.3e-15 Score=107.55 Aligned_cols=154 Identities=19% Similarity=0.165 Sum_probs=104.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
...+|+|+|.+|+|||||+-++....+.....++.+..-......+.- ....+.+|||.|...+. ...
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~-~~ikfeIWDTAGQERy~-----------sla 71 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDD-NTIKFEIWDTAGQERYH-----------SLA 71 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCC-cEEEEEEEEcCCccccc-----------ccc
Confidence 348999999999999999988876665443333333333333333322 34678899999987543 344
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhH
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGA 173 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~ 173 (221)
+.++++++++|+|+|+++.-+... +.|++.|++..+... .+.+|+||+|+.... -+...+|..+..-..+..++
T Consensus 72 pMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~--vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSA 149 (200)
T KOG0092|consen 72 PMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNI--VIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSA 149 (200)
T ss_pred cceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCe--EEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEec
Confidence 578899999999999996555544 788888887644322 466899999987632 34567777754344455777
Q ss_pred HHHHhHHHHHHh
Q 027618 174 TKLRDQQFEVDS 185 (221)
Q Consensus 174 ~~~~~~~~~~~~ 185 (221)
+...++.+.+..
T Consensus 150 KTg~Nv~~if~~ 161 (200)
T KOG0092|consen 150 KTGENVNEIFQA 161 (200)
T ss_pred ccccCHHHHHHH
Confidence 777776666555
No 119
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.63 E-value=3.8e-15 Score=109.55 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=75.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
...+|+++|++|+|||||++++++....... ....+.........+ .+ ..+.++||||...+ ..
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~-----------~~ 71 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEI-KGEKIKLQIWDTAGQERF-----------RS 71 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHH-----------HH
Confidence 3489999999999999999999866542221 111122233333334 44 45788999996432 12
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....++..+|++++|+|+++..+... ..++..+....... .|+++|+||.|...
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~ 126 (169)
T cd04114 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLAE 126 (169)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccc
Confidence 22345677899999999985443322 35555555543322 47899999999764
No 120
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.62 E-value=7.2e-15 Score=108.20 Aligned_cols=115 Identities=17% Similarity=0.082 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
.+|+++|++|+|||||++++++........ +.. .......... .....+.+|||||...+.... .
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~-----------~ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYV-PTV--FDNYSATVTVDGKQVNLGLWDTAGQEEYDRLR-----------P 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC-Cce--eeeeEEEEEECCEEEEEEEEeCCCcccccccc-----------h
Confidence 378999999999999999999887522211 111 1111112222 123468899999987542211 1
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..++.+|++++|+|.+++.+... ..++..+..... ..|+++|+||+|+..
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~ 118 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRD 118 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhh
Confidence 34467899999999985433332 345555554322 358999999999876
No 121
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.62 E-value=1.2e-14 Score=110.64 Aligned_cols=115 Identities=15% Similarity=0.169 Sum_probs=79.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccc-----------------------------cCCCCcceeeEEEEEEeeCCceE
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMQRTVLKDGQVV 71 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 71 (221)
+|+++|++|+|||||+++|++....... ....+.|.........+ .+..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 5899999999999999999765432110 01145566666666666 78899
Q ss_pred EEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.++||||+.++ ...+..++..+|++++|+|+.+.....+...+..+... +. +++++|+||+|+..
T Consensus 80 ~liDTpG~~~~-----------~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~-~~---~~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHEQY-----------TRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLL-GI---RHVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHHHH-----------HHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHc-CC---CcEEEEEEchhccc
Confidence 99999996431 12223345678999999999877666665544444332 32 35788999999864
No 122
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.62 E-value=4.7e-15 Score=109.61 Aligned_cols=112 Identities=22% Similarity=0.150 Sum_probs=72.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 22 i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
|+++|++|+|||||++++++....... .+. ........... .+ ..+.+|||||...+.. ....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~-~~~--~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDY-VPT--VFENYSADVEV-DGKPVELGLWDTAGQEDYDR-----------LRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCC-CCc--EEeeeeEEEEE-CCEEEEEEEEECCCCcccch-----------hchh
Confidence 589999999999999999987653221 111 11111112223 33 3588999999764321 1224
Q ss_pred hcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.+..+|++++|+|+++.-+... ..|+..+.+... ..|+++|+||+|+..
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 116 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLRE 116 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhhh
Confidence 5678899999999986544443 346666665432 348999999999764
No 123
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.62 E-value=1.2e-14 Score=109.00 Aligned_cols=128 Identities=14% Similarity=0.089 Sum_probs=80.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
....+|+++|++|||||||++++++...... .+|.......+.+ .+..+.++||||... ....
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~-----~~T~~~~~~~i~~-~~~~~~l~D~~G~~~-----------~~~~ 79 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQH-----VPTLHPTSEELTI-GNIKFKTFDLGGHEQ-----------ARRL 79 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccCcceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 4458999999999999999999998664211 1122233344555 677889999999542 1122
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC-ChhhHHHHhc
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLG 162 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~-~~~~~~~~l~ 162 (221)
...+++.++++++|+|+.+.-+... ..++..+.+. ......|+++++||+|+... ....+.+++.
T Consensus 80 ~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~ 146 (190)
T cd00879 80 WKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSD-EELANVPFLILGNKIDLPGAVSEEELRQALG 146 (190)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcC-ccccCCCEEEEEeCCCCCCCcCHHHHHHHhC
Confidence 3345677899999999984422221 2233333221 11123589999999998642 2445666664
No 124
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.1e-14 Score=107.14 Aligned_cols=157 Identities=16% Similarity=0.051 Sum_probs=108.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
+.+...+|+++|.+|+|||+++-++....+..+-.++.+..-.......+. ....+.+|||.|... +.
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g-~~i~lQiWDtaGQer-----------f~ 75 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDG-KKIKLQIWDTAGQER-----------FR 75 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCC-eEEEEEEEEcccchh-----------HH
Confidence 456678999999999999999999887765433333333333332222322 345788999999654 33
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK 170 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~ 170 (221)
.....++++++++++|+|+.+.-+.+. ..|++.+.+.-... .+.++|+||+|.-... .+.-+++..+....++.
T Consensus 76 ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~--v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~E 153 (207)
T KOG0078|consen 76 TITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDD--VVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFE 153 (207)
T ss_pred HHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCC--CcEEEeeccccccccccccHHHHHHHHHHhCCeEEE
Confidence 555667788899999999986665555 67999999874443 3899999999976421 34556666655566666
Q ss_pred hhHHHHHhHHHHHHh
Q 027618 171 KGATKLRDQQFEVDS 185 (221)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (221)
.|++.-.++.+.+-.
T Consensus 154 tSAk~~~NI~eaF~~ 168 (207)
T KOG0078|consen 154 TSAKTNFNIEEAFLS 168 (207)
T ss_pred ccccCCCCHHHHHHH
Confidence 777777677666655
No 125
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.62 E-value=1.5e-14 Score=106.60 Aligned_cols=147 Identities=15% Similarity=0.027 Sum_probs=87.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
+|+++|.+|+|||||++++++.... . ..+|.........+ .+..+.++||||...+. ..+...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~---~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~~-----------~~~~~~ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--Q---PIPTIGFNVETVEY-KNLKFTIWDVGGKHKLR-----------PLWKHY 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--C---cCCcCceeEEEEEE-CCEEEEEEECCCChhcc-----------hHHHHH
Confidence 5889999999999999999987431 1 12233333344555 67789999999976432 223345
Q ss_pred cCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC-ChhhHHHHhcccC---C---chhhhh
Q 027618 101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLGREC---P---KPLKKG 172 (221)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~-~~~~~~~~l~~~~---~---~~l~~~ 172 (221)
+..+|++++|+|++++.+..+ ..++..+.+... ....|+++|+||.|+... ....+.+++.-.. . ..+..+
T Consensus 64 ~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 142 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKE-LRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCD 142 (169)
T ss_pred hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChh-hCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCc
Confidence 577899999999985433322 333333332111 112489999999997542 1234555553110 1 223355
Q ss_pred HHHHHhHHHHHHh
Q 027618 173 ATKLRDQQFEVDS 185 (221)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (221)
+....++.+.++.
T Consensus 143 a~~g~gv~~~f~~ 155 (169)
T cd04158 143 ARSGMGLYEGLDW 155 (169)
T ss_pred CCCCCCHHHHHHH
Confidence 5555555555543
No 126
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.62 E-value=5.1e-15 Score=109.95 Aligned_cols=116 Identities=19% Similarity=0.223 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccc------ccc-------CCCCcceeeEEEEEEe----eCCceEEEEeCCCCCCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFK------SRA-------SSSGVTSTCEMQRTVL----KDGQVVNVIDTPGLFDF 82 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~------~~~-------~~~~~t~~~~~~~~~~----~~~~~~~liDtPG~~~~ 82 (221)
+.|+++|++|+|||||++++++..... ... ...+.+.........+ .....+.+|||||+.++
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 468999999999999999998743110 000 0112233322222222 13456889999998653
Q ss_pred CCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
. ..+..++..+|++++|+|+.+..+..+...+..+.. . ..|+++|+||+|+..
T Consensus 81 ~-----------~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~--~~~iiiv~NK~Dl~~ 133 (179)
T cd01890 81 S-----------YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---N--NLEIIPVINKIDLPS 133 (179)
T ss_pred H-----------HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---c--CCCEEEEEECCCCCc
Confidence 1 222334566799999999986666555444433322 1 237999999999754
No 127
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.62 E-value=1.2e-15 Score=105.78 Aligned_cols=116 Identities=20% Similarity=0.193 Sum_probs=69.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccc--cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFK--SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
+|+++|++|+|||||+++|++..... ......+.+.......... ....+.++|++|...+.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~----------- 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQHQ----------- 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCTSH-----------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceeccccc-----------
Confidence 68999999999999999999887641 1112222333333223322 233578999999754322211
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGD 148 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D 148 (221)
.....+|++++|+|.++..+... ..++.++..........|+++|.||.|
T Consensus 69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 11344599999999985443333 334455555433223358999999998
No 128
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=3.2e-14 Score=102.46 Aligned_cols=154 Identities=15% Similarity=0.085 Sum_probs=111.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
...+++++|.+|+|||+|+...+...+.+....+.+...-.....+.- ...++.+|||.|... ++...
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~-k~IKlqiwDtaGqe~-----------frsv~ 72 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDG-KQIKLQIWDTAGQES-----------FRSVT 72 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcC-ceEEEEEEecCCcHH-----------HHHHH
Confidence 347899999999999999999998876554443444333333344433 556899999999653 34556
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhH
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGA 173 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~ 173 (221)
...++.+.+.|+|+|++.+-+... ..|+..++...... .-++++.||+|+-... .+.-++|.+++.--++..++
T Consensus 73 ~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~N--mvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSa 150 (216)
T KOG0098|consen 73 RSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNEN--MVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSA 150 (216)
T ss_pred HHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCC--cEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhh
Confidence 678889999999999996666555 67888887763222 3588999999986432 45667788765555666888
Q ss_pred HHHHhHHHHHHh
Q 027618 174 TKLRDQQFEVDS 185 (221)
Q Consensus 174 ~~~~~~~~~~~~ 185 (221)
+..+.+++++..
T Consensus 151 kt~~~VEEaF~n 162 (216)
T KOG0098|consen 151 KTAENVEEAFIN 162 (216)
T ss_pred hhhhhHHHHHHH
Confidence 888888887776
No 129
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.62 E-value=1e-14 Score=108.79 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|.+|+|||||++++++.........+.+ .......+.. .+ ..+.+|||+|...+ ....
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g--~~~~~~~i~~-~~~~~~l~iwDt~G~~~~-----------~~~~ 66 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLG--VNFMEKTISI-RGTEITFSIWDLGGQREF-----------INML 66 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc--eEEEEEEEEE-CCEEEEEEEEeCCCchhH-----------HHhh
Confidence 3789999999999999999987765322111111 1122223333 33 46889999996532 1233
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (221)
..+++.+|++++|+|++++.+..+ ..|++.++..... ..| ++|+||+|+.
T Consensus 67 ~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~--~~p-ilVgnK~Dl~ 117 (182)
T cd04128 67 PLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKT--AIP-ILVGTKYDLF 117 (182)
T ss_pred HHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCE-EEEEEchhcc
Confidence 456788999999999986655554 4666666654222 234 6889999985
No 130
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.62 E-value=9.7e-15 Score=106.36 Aligned_cols=145 Identities=14% Similarity=0.049 Sum_probs=84.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
+|+++|++|+|||||+++++....... .+|.........+ .+..+.+|||||...+ ......+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGQTSI-----------RPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc-----CCccCcCeEEEEE-CCEEEEEEECCCCHHH-----------HHHHHHH
Confidence 589999999999999999976654211 1222223334445 6678999999997532 1233445
Q ss_pred cCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhcccC-----Cchhhhh
Q 027618 101 KDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGREC-----PKPLKKG 172 (221)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~~-----~~~l~~~ 172 (221)
+..++++++|+|+++..+... ..+...++.. . ....|+++|+||+|..+.. ...+.+.+.... .+.+..+
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~-~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 141 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEE-E-LKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTS 141 (158)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhch-h-hcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEee
Confidence 678899999999985432221 2222222221 1 1235899999999986421 223333332111 1234455
Q ss_pred HHHHHhHHHHHH
Q 027618 173 ATKLRDQQFEVD 184 (221)
Q Consensus 173 ~~~~~~~~~~~~ 184 (221)
+....++.+.++
T Consensus 142 a~~~~gi~~l~~ 153 (158)
T cd04151 142 AIKGEGLDEGMD 153 (158)
T ss_pred ccCCCCHHHHHH
Confidence 555555555544
No 131
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.62 E-value=1.4e-14 Score=111.29 Aligned_cols=117 Identities=21% Similarity=0.067 Sum_probs=72.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCc-ceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGV-TSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
.+|+++|++|+|||||++++++.........+... ........+.. ....+.+|||||... .+. .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~-~~~~l~i~Dt~G~~~----------~~~---~ 66 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDG-EESTLVVIDHWEQEM----------WTE---D 66 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECC-EEEEEEEEeCCCcch----------HHH---h
Confidence 37999999999999999999766543111111111 11112122222 345688999999751 011 1
Q ss_pred hhcC-CCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 99 MAKD-GIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 99 ~~~~-~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.++. .+|++++|++++++-+... ..++..+.+.. .....|+++|+||+|+..
T Consensus 67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNR-QLEDRPIILVGNKSDLAR 120 (221)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhccc
Confidence 2334 7899999999986544433 45566665542 223458999999999764
No 132
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.62 E-value=2.8e-14 Score=126.44 Aligned_cols=122 Identities=20% Similarity=0.192 Sum_probs=84.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCch--HHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIVKC 96 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~~~ 96 (221)
..+|+++|++|+|||||+|+|+|...... ...+.|.........+ .+..+.++||||.++...... ...+.+...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vg--n~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVG--NWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHH
Confidence 36899999999999999999999865322 3456777777667766 788999999999997653221 122222222
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
......+|++++|+|+++ ... ...+..++.+. ..|+++++||+|..+
T Consensus 80 -~l~~~~aD~vI~VvDat~-ler-~l~l~~ql~e~-----giPvIvVlNK~Dl~~ 126 (772)
T PRK09554 80 -YILSGDADLLINVVDASN-LER-NLYLTLQLLEL-----GIPCIVALNMLDIAE 126 (772)
T ss_pred -HHhccCCCEEEEEecCCc-chh-hHHHHHHHHHc-----CCCEEEEEEchhhhh
Confidence 122357899999999984 332 23344445443 248999999999864
No 133
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.62 E-value=3e-14 Score=126.38 Aligned_cols=125 Identities=22% Similarity=0.240 Sum_probs=88.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
...+|+++|.+|+|||||+|+|++....... ...++|.........+ .+..+.+|||||+....... ...+....+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~-~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~--~~~e~~~~~ 524 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVN-DLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKL--TGAEYYSSL 524 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccC-CCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccc--hhHHHHHHH
Confidence 3489999999999999999999998742222 2344555555555566 77889999999986422211 111222221
Q ss_pred --HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 --GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 --~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+++.+|++++|+|++++.+.++..++..+.+. ..|+++|+||+|+..
T Consensus 525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~-----~~piIiV~NK~DL~~ 575 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDA-----GRALVLVFNKWDLMD 575 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEEchhcCC
Confidence 2446788999999999988998887777666542 247999999999875
No 134
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.61 E-value=1.2e-14 Score=106.85 Aligned_cols=114 Identities=17% Similarity=0.091 Sum_probs=73.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
+|+++|.+|+|||||++++++....... ..... .......... ....+.+|||||..... ..+...
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~-~~~~~-~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~~~~~ 67 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENV-PRVLP-EITIPADVTP-ERVPTTIVDTSSRPQDR-----------ANLAAE 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccC-CCccc-ceEeeeeecC-CeEEEEEEeCCCchhhh-----------HHHhhh
Confidence 7899999999999999999987653221 11100 0011111111 34578899999976421 111233
Q ss_pred cCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 101 KDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+..+|++++|++++++.+... ..|++.+++.. . ..|+++|+||+|+..
T Consensus 68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~--~~pviiv~nK~Dl~~ 117 (166)
T cd01893 68 IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-V--KVPIILVGNKSDLRD 117 (166)
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhccc
Confidence 467899999999986555444 35666666542 2 348999999999865
No 135
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.61 E-value=2.6e-14 Score=105.16 Aligned_cols=113 Identities=17% Similarity=0.108 Sum_probs=74.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
+|+++|++|||||||++.+++.. ..... +|.........+ .+..+.++||||... +......+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~--~~~~~---~t~g~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~~ 63 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEI--PKKVA---PTVGFTPTKLRL-DKYEVCIFDLGGGAN-----------FRGIWVNY 63 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC--Ccccc---CcccceEEEEEE-CCEEEEEEECCCcHH-----------HHHHHHHH
Confidence 47999999999999999999762 12211 122222334555 678899999999542 12233456
Q ss_pred cCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+..+|++++|+|+++..+... ..++..+..... ....|+++|+||.|+..
T Consensus 64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~~ 114 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPR-VSGKPILVLANKQDKKN 114 (167)
T ss_pred HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCcc-ccCCcEEEEEeCCCCcC
Confidence 678899999999985543333 344444433211 12358999999999765
No 136
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.61 E-value=1.8e-14 Score=105.23 Aligned_cols=118 Identities=18% Similarity=0.110 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
.+|+++|++|+|||||++++++............ ........... ....+.+|||||..++. .....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~i~D~~g~~~~~-----------~~~~~ 67 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDG-EDVQLNILDTAGQEDYA-----------AIRDN 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECC-EEEEEEEEECCChhhhh-----------HHHHH
Confidence 4799999999999999999997765322111111 11111111111 23468899999975422 22334
Q ss_pred hcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.+..++++++|+++.+.-+... ..++..+..... ....|+++|+||+|...
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 68 YHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED 119 (164)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence 5567799999999874333222 344455544322 23458999999999865
No 137
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.61 E-value=4.2e-14 Score=102.20 Aligned_cols=118 Identities=25% Similarity=0.209 Sum_probs=78.1
Q ss_pred EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCC
Q 027618 24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDG 103 (221)
Q Consensus 24 l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (221)
++|++|+|||||+|+|++....... ...+.+.........+.....+.++||||+.+.......... .+......
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~----~~~~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREE----LARRVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHH----HHHHHHHh
Confidence 5799999999999999988654322 233344444444554423678999999999876544332212 22234456
Q ss_pred CcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 104 IHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 104 ~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+|++++|++...........+...... ...|+++|+||+|+..
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~~-----~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLRE-----RGKPVLLVLNKIDLLP 118 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCeEEEEEEccccCC
Confidence 799999999986665555442222222 2347999999999887
No 138
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=3.9e-15 Score=113.91 Aligned_cols=127 Identities=24% Similarity=0.234 Sum_probs=86.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcce-eeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTS-TCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
...+..|+++|.||+|||||||+|++....... -.+.+. ...+....+ .+..+++|||||+.+....+ .+.+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~--~vg~~t~~~~~~~~~~-~~~~l~lwDtPG~gdg~~~D----~~~r 108 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVS--KVGVGTDITTRLRLSY-DGENLVLWDTPGLGDGKDKD----AEHR 108 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceee--ecccCCCchhhHHhhc-cccceEEecCCCcccchhhh----HHHH
Confidence 345577789999999999999999965442221 111122 222222223 66889999999999844333 3455
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
+.+...++..|.+++++++.++.-.-+..+++.+.-.... .++++++|.+|+..+
T Consensus 109 ~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p 163 (296)
T COG3596 109 QLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEP 163 (296)
T ss_pred HHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhcc
Confidence 5555666777999999999888766666676666544222 479999999998763
No 139
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.61 E-value=5.8e-15 Score=107.60 Aligned_cols=138 Identities=18% Similarity=0.180 Sum_probs=81.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
++|+++|++|+|||||+|+|+|..... ..+ ....+ ... .+|||||.+... ....+.+ ..
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~~~------~~~-----~~v~~-~~~--~~iDtpG~~~~~---~~~~~~~----~~ 60 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYTLA------RKT-----QAVEF-NDK--GDIDTPGEYFSH---PRWYHAL----IT 60 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCccC------ccc-----eEEEE-CCC--CcccCCccccCC---HHHHHHH----HH
Confidence 479999999999999999999864210 111 11222 222 279999986432 2222222 23
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccC--CchhhhhHHHHH
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGREC--PKPLKKGATKLR 177 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~--~~~l~~~~~~~~ 177 (221)
.+..+|++++|+|+++..+.... ++.+. +. ..|+++++||+|+...+...+.+++.+.. .+.+..++..-.
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~~~----~~~~~-~~--~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~ 133 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRLPA----GLLDI-GV--SKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQ 133 (158)
T ss_pred HHhcCCEEEEEEeCCCcccccCH----HHHhc-cC--CCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCcc
Confidence 45778999999999855433222 22222 11 23799999999976533444555554322 144555665555
Q ss_pred hHHHHHHh
Q 027618 178 DQQFEVDS 185 (221)
Q Consensus 178 ~~~~~~~~ 185 (221)
.+.+.++.
T Consensus 134 gi~~l~~~ 141 (158)
T PRK15467 134 SVQQLVDY 141 (158)
T ss_pred CHHHHHHH
Confidence 55555553
No 140
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.61 E-value=2.2e-14 Score=112.92 Aligned_cols=117 Identities=16% Similarity=0.204 Sum_probs=80.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccc--------------------cCCCCcceeeEEEEEEeeCCceEEEEeCCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPG 78 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~--------------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG 78 (221)
.+.|+++|+.|+|||||+++|+........ ....+.+.........| .+..+.+|||||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG 80 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPG 80 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCC
Confidence 378999999999999999999854321110 00123444455556777 889999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
..++. .+ ...+++.+|++++|+++.+........+++..... ..|+++++||+|....
T Consensus 81 ~~df~-------~~----~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~-----~~P~iivvNK~D~~~a 138 (267)
T cd04169 81 HEDFS-------ED----TYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLR-----GIPIITFINKLDREGR 138 (267)
T ss_pred chHHH-------HH----HHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhc-----CCCEEEEEECCccCCC
Confidence 76532 11 22334567999999999877766666665554332 2379999999997653
No 141
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.61 E-value=1.3e-14 Score=106.14 Aligned_cols=116 Identities=18% Similarity=0.194 Sum_probs=75.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|.+|+|||||++.++........ .+. ........... .+ ..+.+|||||...+... .
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~-~~t--~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~-----------~ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKY-DPT--IEDFYRKEIEV-DSSPSVLEILDTAGTEQFASM-----------R 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCc--hhheEEEEEEE-CCEEEEEEEEECCCcccccch-----------H
Confidence 68999999999999999999877653221 111 11122223333 33 35778999997654321 2
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
...++.+|++++|+|++++-+..+ ..++..+.+.... ...|+++|+||+|+..
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piviv~nK~Dl~~ 120 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGY-EKVPIILVGNKVDLES 120 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchh
Confidence 234567799999999986554443 4566666654321 2348999999999754
No 142
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.61 E-value=1e-14 Score=109.41 Aligned_cols=114 Identities=19% Similarity=0.140 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
++|+++|++|+|||||++++++....... .+ |.... ....... ....+.+|||||...+.. ..
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~-~~---t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~-----------l~ 65 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVY-EP---TVFENYVHDIFVDGLHIELSLWDTAGQEEFDR-----------LR 65 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCcc-CC---cceeeeEEEEEECCEEEEEEEEECCCChhccc-----------cc
Confidence 47899999999999999999987653221 11 11111 1122221 234688999999754321 12
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
...+..+|++++|++++++-+... ..|+..+..... ..|+++|+||+|+..
T Consensus 66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~---~~piilvgNK~Dl~~ 118 (189)
T cd04134 66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLRE 118 (189)
T ss_pred cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 245678899999999986655544 346777765422 348999999999865
No 143
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.61 E-value=5.2e-14 Score=102.94 Aligned_cols=120 Identities=22% Similarity=0.305 Sum_probs=74.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH---
Q 027618 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG--- 98 (221)
Q Consensus 22 i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~--- 98 (221)
|+++|++|+|||||+|.|++...........+.|..... .. ....++++||||+...... .....+....+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~--~~~~~~~~D~~g~~~~~~~-~~~~~~~~~~~~~~~ 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FN--VNDKFRLVDLPGYGYAKVS-KEVKEKWGKLIEEYL 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EE--ccCeEEEecCCCccccccC-HHHHHHHHHHHHHHH
Confidence 799999999999999999954332222222233333222 22 2348899999998764331 111222222222
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.....+++++++++.+...+......++++... + .|+++++||+|...
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~~ 124 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-G----IPFLVVLTKADKLK 124 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-C----CCEEEEEEchhcCC
Confidence 222445788999998866666666666666553 2 47999999999875
No 144
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.61 E-value=3.8e-14 Score=112.06 Aligned_cols=115 Identities=23% Similarity=0.253 Sum_probs=78.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccc---c-------------CCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSR---A-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~---~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (221)
+|+++|++|+|||||+|+|++....... . ...+.+.........| .+..+.+|||||..++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~f-- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYADF-- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHHH--
Confidence 4799999999999999999764321110 0 0113334444555666 7889999999997542
Q ss_pred CchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
.. .+..++..+|++++|++++..........++.+... ..|.++++||+|....
T Consensus 78 -----~~----~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~-----~~p~iivvNK~D~~~~ 131 (268)
T cd04170 78 -----VG----ETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEA-----GIPRIIFINKMDRERA 131 (268)
T ss_pred -----HH----HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCccCCC
Confidence 12 222344566999999999877776666666655432 2378999999998764
No 145
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.60 E-value=2.2e-14 Score=107.01 Aligned_cols=149 Identities=13% Similarity=0.055 Sum_probs=87.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
...+|+++|++|+|||||++++........ .+|.......+.. .+..+.+|||||... +....
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~-----~~T~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~ 78 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVTT-----IPTIGFNVETVEY-KNLKFTMWDVGGQDK-----------LRPLW 78 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc-----CCccccceEEEEE-CCEEEEEEECCCCHh-----------HHHHH
Confidence 348899999999999999999965443211 1222233334445 677899999999643 22333
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCC-hhhHHHHhcccCC-----chh
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELEDN-DETLEDYLGRECP-----KPL 169 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~~~-----~~l 169 (221)
..++..+|++++|+|++++-+... ..+.+.+.+... ...|+++|+||.|..... ...+.+.+..... ..+
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~ 156 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERIGD--AREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQ 156 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEE
Confidence 456788899999999985433222 222333332221 235899999999975421 2334444432100 112
Q ss_pred hhhHHHHHhHHHHHHh
Q 027618 170 KKGATKLRDQQFEVDS 185 (221)
Q Consensus 170 ~~~~~~~~~~~~~~~~ 185 (221)
..++....++.+.++.
T Consensus 157 ~~Sa~tg~gv~e~~~~ 172 (182)
T PTZ00133 157 GCCATTAQGLYEGLDW 172 (182)
T ss_pred eeeCCCCCCHHHHHHH
Confidence 3455555555555554
No 146
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.60 E-value=1.2e-14 Score=107.73 Aligned_cols=113 Identities=20% Similarity=0.109 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
.+|+++|.+|+|||||+++++........ .+|..... ..... .+ ..+.+|||||...+.. .
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~----~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~-----------~ 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEY----VPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDR-----------L 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCceeeeeEEEEEE-CCEEEEEEEEECCCccchhh-----------h
Confidence 58999999999999999999976652221 11221111 12233 33 4678999999765321 1
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....+..+|++++|+|++++-+.... .|+..+....+ ..|+++|+||.|+..
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~~ 119 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP---KTPFLLVGTQIDLRD 119 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhh
Confidence 12466788999999999866555442 46666665422 348999999999754
No 147
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.60 E-value=3.4e-14 Score=112.34 Aligned_cols=132 Identities=23% Similarity=0.257 Sum_probs=79.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeeEEEEEEee-C--CceEEEEeCCCCCCCCCCchHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLK-D--GQVVNVIDTPGLFDFSAGSEFV 89 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~-~--~~~~~liDtPG~~~~~~~~~~~ 89 (221)
.++|+++|.+|+|||||||+|++......... ....+........... . ...+.|+||||+++.- .+...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i-~n~~~ 82 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI-DNSDC 82 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS-THCHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccc-cchhh
Confidence 37899999999999999999999876544210 1111222222222221 2 2368899999998753 33444
Q ss_pred HHHHHHHHHhhc-----------------CCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 90 GKEIVKCIGMAK-----------------DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 90 ~~~~~~~~~~~~-----------------~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+..+..++...+ ..+|++||+++++ .++++.|...++.|.+. .++|.|+.|+|.+.
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEecccccC
Confidence 444544433221 3579999999985 47888998887777653 37999999999997
Q ss_pred CChhhHHH
Q 027618 152 DNDETLED 159 (221)
Q Consensus 152 ~~~~~~~~ 159 (221)
...+..
T Consensus 157 --~~el~~ 162 (281)
T PF00735_consen 157 --PEELQA 162 (281)
T ss_dssp --HHHHHH
T ss_pred --HHHHHH
Confidence 444443
No 148
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.60 E-value=1.6e-14 Score=106.96 Aligned_cols=114 Identities=19% Similarity=0.109 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|.+|+|||||+.+++........ .+. ........... .+ ..+.+|||||...+. ...
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~-~~t--~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~ 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEY-IPT--VFDNYSANVMV-DGKPVNLGLWDTAGQEDYD-----------RLR 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcC-CCc--ceeeeEEEEEE-CCEEEEEEEEECCCchhhh-----------hhh
Confidence 57999999999999999999876543221 111 11111112222 33 467899999965432 122
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
...+.++|++++|+|++++-+... ..|+..+..... ..|+++|+||.|+..
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilvgnK~Dl~~ 119 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 119 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhcc
Confidence 345678899999999986555544 246666655422 348999999999753
No 149
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.60 E-value=3.6e-14 Score=105.09 Aligned_cols=115 Identities=16% Similarity=0.092 Sum_probs=75.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
..+|+++|++|+|||||++++++...... .+|.........+ .+..+.++||||...+ .....
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~-----------~~~~~ 77 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEIVY-KNIRFLMWDIGGQESL-----------RSSWN 77 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCeEEEEEECCCCHHH-----------HHHHH
Confidence 47999999999999999999987654321 1233333344555 6778999999997532 12233
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.++..+|++++|+|+++..+... ...+..+.+..+ ....|+++++||+|+..
T Consensus 78 ~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 78 TYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCCC
Confidence 45678899999999985433222 222332222111 12358999999999764
No 150
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.3e-14 Score=105.18 Aligned_cols=121 Identities=18% Similarity=0.131 Sum_probs=91.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
+..++|+++|.+|+|||-|+.+.+...+.....++.+.........++. +-....+|||.|...+ +..
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~-k~vkaqIWDTAGQERy-----------rAi 79 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDG-KTVKAQIWDTAGQERY-----------RAI 79 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecC-cEEEEeeecccchhhh-----------ccc
Confidence 4458899999999999999999998877555555555555544444443 4557889999996543 234
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....++++.+.++|+|++.+.+.+. .+|++.|++..... .++++|.||+|+..
T Consensus 80 tSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~n--ivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 80 TSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSN--IVIMLVGNKSDLNH 133 (222)
T ss_pred cchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCC--eEEEEeecchhhhh
Confidence 4567899999999999986777665 78888888865443 47999999999864
No 151
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.60 E-value=3.1e-14 Score=104.86 Aligned_cols=147 Identities=15% Similarity=0.109 Sum_probs=88.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
..+|+++|.+|+|||||++++........ . +|.........+ ....+.+|||||... +.....
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~~-~----~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~ 71 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVTT-I----PTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPLWR 71 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCccc-c----CCcccceEEEEE-CCEEEEEEECCCCHH-----------HHHHHH
Confidence 47999999999999999999986543211 1 122222223344 677899999999743 122234
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCC-ChhhHHHHhccc--C---Cchhh
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED-NDETLEDYLGRE--C---PKPLK 170 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~-~~~~~~~~l~~~--~---~~~l~ 170 (221)
.++..+|++++|+|+++..+... ..+++.+..... ...|+++|+||+|+... ....+.+++.-. . -..+.
T Consensus 72 ~~~~~a~~ii~v~D~t~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 149 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDRIDE--ARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQP 149 (168)
T ss_pred HHhccCCEEEEEEeCCchhhHHH--HHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEE
Confidence 56678899999999986543322 223333332211 23489999999997542 134455554311 0 12344
Q ss_pred hhHHHHHhHHHHHH
Q 027618 171 KGATKLRDQQFEVD 184 (221)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (221)
.++....++.+.++
T Consensus 150 ~SAk~g~gv~~~~~ 163 (168)
T cd04149 150 SCATSGDGLYEGLT 163 (168)
T ss_pred eeCCCCCChHHHHH
Confidence 56665555555544
No 152
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.60 E-value=5.7e-14 Score=104.68 Aligned_cols=149 Identities=15% Similarity=0.065 Sum_probs=89.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
...+|+++|..|+|||||+++++....... .+|.......+.+ .+..+.+|||||... +....
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~-----~pt~g~~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~~~ 78 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLW 78 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCccc-----cCCcceeEEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence 347999999999999999999986544221 1222233334455 677899999999532 22333
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCC-hhhHHHHhcccC--C---chh
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELEDN-DETLEDYLGREC--P---KPL 169 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~~--~---~~l 169 (221)
...+..+|++++|+|++++.+..+ ..+.+.+.+... ...|++|++||.|..... ...+.+.+.-.. + ..+
T Consensus 79 ~~~~~~a~~iI~V~D~s~~~s~~~--~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~ 156 (181)
T PLN00223 79 RHYFQNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQ 156 (181)
T ss_pred HHHhccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEE
Confidence 445678899999999985443322 223333332211 234899999999976421 234444443111 0 112
Q ss_pred hhhHHHHHhHHHHHHh
Q 027618 170 KKGATKLRDQQFEVDS 185 (221)
Q Consensus 170 ~~~~~~~~~~~~~~~~ 185 (221)
..++....++.+.++.
T Consensus 157 ~~Sa~~g~gv~e~~~~ 172 (181)
T PLN00223 157 STCATSGEGLYEGLDW 172 (181)
T ss_pred eccCCCCCCHHHHHHH
Confidence 3566666666665554
No 153
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.60 E-value=3.3e-14 Score=105.42 Aligned_cols=115 Identities=14% Similarity=0.083 Sum_probs=73.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
..+|+++|++|+|||||++++........ .+|.........+ ....+.+|||||...+ .....
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~~-----~~t~~~~~~~~~~-~~~~l~l~D~~G~~~~-----------~~~~~ 75 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESVTT-----IPTIGFNVETVTY-KNISFTVWDVGGQDKI-----------RPLWR 75 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCc-----CCccccceEEEEE-CCEEEEEEECCCChhh-----------HHHHH
Confidence 48999999999999999999964433111 1232333334445 6778999999997542 12334
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.++..+|++++|+|++++.+... ..++..+.... .....|++||+||.|+..
T Consensus 76 ~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 76 HYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNED-ELRDAVILVFANKQDLPD 128 (175)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCH-hhcCCcEEEEEeCcCccc
Confidence 45688899999999985433322 23333322110 011348999999999754
No 154
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.60 E-value=1.3e-14 Score=109.14 Aligned_cols=115 Identities=17% Similarity=0.085 Sum_probs=74.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
..+|+++|.+|+|||||+.+++...+..... +|..... ...... ....+.+|||||...+. ..
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~----~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~-----------~l 67 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYI----PTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYD-----------RL 67 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCC----CceEeeeEEEEEECCEEEEEEEEECCCchhhh-----------hh
Confidence 3789999999999999999998765432211 1111111 112220 23468899999975422 22
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....++.+|++++|+|++++-+.... .|...+.... . ..|+++|+||.|+..
T Consensus 68 ~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL~~ 121 (191)
T cd01875 68 RTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-P--NVPILLVGTKKDLRN 121 (191)
T ss_pred hhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEEeChhhhc
Confidence 33467889999999999866655543 3555555432 2 348999999999754
No 155
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.59 E-value=2.9e-14 Score=123.04 Aligned_cols=128 Identities=19% Similarity=0.263 Sum_probs=89.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
.+.++|+++|+.++|||||+++|.+..+... ...+.|.......+.+..+..+.+|||||+.++.. .
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~--e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~-----------~ 151 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQG--EAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTS-----------M 151 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccc--cCCceeecceEEEEEECCCcEEEEEECCCCcchhh-----------H
Confidence 4568999999999999999999998765332 23355666555666663334899999999876431 1
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhc
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~ 162 (221)
....+..+|++++|+++++...++....+..+... ..|+++++||+|+...+...+.+.+.
T Consensus 152 r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~-----~vPiIVviNKiDl~~~~~e~v~~~L~ 212 (587)
T TIGR00487 152 RARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAA-----NVPIIVAINKIDKPEANPDRVKQELS 212 (587)
T ss_pred HHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHc-----CCCEEEEEECcccccCCHHHHHHHHH
Confidence 22455778999999999877777776666554332 23799999999986533444444443
No 156
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.59 E-value=2e-14 Score=107.47 Aligned_cols=127 Identities=11% Similarity=0.051 Sum_probs=79.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
....+|+++|.+|||||||++.+.+...... .+|.........+ .+..+.++||||...+ ...
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~-----------~~~ 77 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEELAI-GNIKFTTFDLGGHQQA-----------RRL 77 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEEEE-CCEEEEEEECCCCHHH-----------HHH
Confidence 4458999999999999999999998754211 1222233344445 6778999999997531 122
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC-ChhhHHHHh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYL 161 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~-~~~~~~~~l 161 (221)
...++..+|++++|+|+++.-+... ...+..+.+... ....|+++|+||.|.... ....+.+.+
T Consensus 78 ~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~~~~~~~~i~~~l 143 (184)
T smart00178 78 WKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEE-LATVPFLILGNKIDAPYAASEDELRYAL 143 (184)
T ss_pred HHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccCCCCHHHHHHHc
Confidence 3356678899999999984322211 222322222111 123489999999997532 133455555
No 157
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.59 E-value=3.1e-14 Score=103.55 Aligned_cols=113 Identities=14% Similarity=0.081 Sum_probs=73.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
+|+++|.+|+|||||++++++.... . ...|.........+ .+..+.+|||||...+ .......
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~----~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----------~~~~~~~ 63 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-T----TIPTIGFNVETVEY-KNVSFTVWDVGGQDKI-----------RPLWKHY 63 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-C----CCCCcCcceEEEEE-CCEEEEEEECCCChhh-----------HHHHHHH
Confidence 4899999999999999999988631 1 12222333344445 6778999999997642 1223345
Q ss_pred cCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+..+|++++|+|+.+.-+... ..++..+..... ....|+++++||+|...
T Consensus 64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPG 114 (158)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCcc
Confidence 567799999999985422222 233333322211 12348999999999875
No 158
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.59 E-value=2.6e-14 Score=105.21 Aligned_cols=117 Identities=20% Similarity=0.163 Sum_probs=74.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
.+|+++|.+|+|||||++++++...... ..+.... .......+. ....+.+|||||...+.. ...
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~-~~~t~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~ 67 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIES-YDPTIED--SYRKQVEIDGRQCDLEILDTAGTEQFTA-----------MRE 67 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-cCCcchh--eEEEEEEECCEEEEEEEEeCCCcccchh-----------hhH
Confidence 5899999999999999999987764322 1111111 112222231 224678999999775432 222
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+..++++++|++.+++-+... ..+.+.+.+.... ...|+++++||.|...
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~ 120 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLED 120 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhccc
Confidence 34566799999999985444333 4455555554332 2348999999999764
No 159
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.59 E-value=4.6e-14 Score=106.15 Aligned_cols=115 Identities=17% Similarity=0.286 Sum_probs=73.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcc---cc--cccCCCCcceeeEEEEEEee-------------CCceEEEEeCCCCCCC
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRA---FK--SRASSSGVTSTCEMQRTVLK-------------DGQVVNVIDTPGLFDF 82 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~---~~--~~~~~~~~t~~~~~~~~~~~-------------~~~~~~liDtPG~~~~ 82 (221)
+|+++|++++|||||++++++... .. ......+.|.........+. .+..+.+|||||..+
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 689999999999999999997310 00 00112234444444434331 256899999999732
Q ss_pred CCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+...+......+|++++|+|+.+..+..+...+.... .. ..|+++++||+|+..
T Consensus 81 ----------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~-~~----~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 81 ----------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGE-IL----CKKLIVVLNKIDLIP 134 (192)
T ss_pred ----------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHH-Hc----CCCEEEEEECcccCC
Confidence 2222223345679999999998766666544443322 22 237999999999874
No 160
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.59 E-value=4.1e-14 Score=104.51 Aligned_cols=117 Identities=17% Similarity=0.098 Sum_probs=74.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
.+..+|+++|++|+|||||+++|++...... ..|.......+.+ .+..+.++||||... +...
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i~~-~~~~~~~~D~~G~~~-----------~~~~ 74 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTVQS-DGFKLNVWDIGGQRA-----------IRPY 74 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 3468999999999999999999998754211 1122222334445 678899999999642 1233
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+..++..+|++++|+|+.+.-+... ..++..+.+... ....|+++++||+|...
T Consensus 75 ~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 75 WRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEK-LAGVPVLVFANKQDLAT 129 (173)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECCCCcc
Confidence 3445677899999999984322222 223222222111 12358999999999865
No 161
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.58 E-value=5e-14 Score=106.86 Aligned_cols=117 Identities=15% Similarity=0.197 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeeEEEEEEee--------------------------CC----
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLK--------------------------DG---- 68 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~--------------------------~~---- 68 (221)
.+|+++|++|+|||||+.+|++... ...+....+.+..+......|. .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 3689999999999999999987732 2122222333434433333331 02
Q ss_pred --ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccccEEEEEe
Q 027618 69 --QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FSQEEEAALHSLQTLFGKKIFDYMIVVFT 145 (221)
Q Consensus 69 --~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~t 145 (221)
..+.||||||.. .+...+...+..+|++++|+|+.+. ........+..+... +. +|+++|+|
T Consensus 81 ~~~~i~~iDtPG~~-----------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~~---~~iiivvN 145 (203)
T cd01888 81 LVRHVSFVDCPGHE-----------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-GL---KHIIIVQN 145 (203)
T ss_pred cccEEEEEECCChH-----------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-CC---CcEEEEEE
Confidence 678999999942 2334444555677999999999853 334444455444332 22 36899999
Q ss_pred cCCCCC
Q 027618 146 GGDELE 151 (221)
Q Consensus 146 k~D~~~ 151 (221)
|+|+..
T Consensus 146 K~Dl~~ 151 (203)
T cd01888 146 KIDLVK 151 (203)
T ss_pred chhccC
Confidence 999875
No 162
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.58 E-value=4.7e-14 Score=108.06 Aligned_cols=115 Identities=17% Similarity=0.072 Sum_probs=73.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
.+|+++|.+|+|||||++++++...+.....+.+.. .. ..+.. .....+.+|||+|...+ .....
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~-~~--~~~~~~~~~v~L~iwDt~G~e~~-----------~~l~~ 67 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFEN-YT--ASFEIDKRRIELNMWDTSGSSYY-----------DNVRP 67 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccc-eE--EEEEECCEEEEEEEEeCCCcHHH-----------HHHhH
Confidence 589999999999999999999876532211111111 11 12222 02346788999996432 12334
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.+++.+|++++|+|++++-+... ..|...+.... . ..|+++|+||+|+..
T Consensus 68 ~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~--~~piiLVgnK~DL~~ 119 (222)
T cd04173 68 LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-P--NAKVVLVGCKLDMRT 119 (222)
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEEECccccc
Confidence 56789999999999986654444 34444444432 2 348999999999754
No 163
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.58 E-value=1.2e-14 Score=103.96 Aligned_cols=134 Identities=17% Similarity=0.199 Sum_probs=79.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
+|+++|++|+|||||+|++++.... . ..|. ...+ .. .+|||||... .. ......+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-----~-~~t~-----~~~~-~~---~~iDt~G~~~---~~----~~~~~~~~~~ 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-----Y-KKTQ-----AVEY-ND---GAIDTPGEYV---EN----RRLYSALIVT 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-----c-ccce-----eEEE-cC---eeecCchhhh---hh----HHHHHHHHHH
Confidence 7899999999999999999987531 1 1121 1223 22 5899999742 11 1112222234
Q ss_pred cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccC-CchhhhhHHHHH
Q 027618 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGREC-PKPLKKGATKLR 177 (221)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~-~~~l~~~~~~~~ 177 (221)
++.+|++++|+|++++.+.....+++. .+ .|+++|+||+|+.... .+...++++... ...+..++....
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~~~~~----~~----~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 131 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPGFASI----FV----KPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQ 131 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChhHHHh----cc----CCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCC
Confidence 688899999999986766544433322 12 2799999999976421 122344444321 134445555444
Q ss_pred hHHHHHH
Q 027618 178 DQQFEVD 184 (221)
Q Consensus 178 ~~~~~~~ 184 (221)
++.+.++
T Consensus 132 gi~~l~~ 138 (142)
T TIGR02528 132 GLEALVD 138 (142)
T ss_pred CHHHHHH
Confidence 5554443
No 164
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.58 E-value=9.9e-15 Score=106.60 Aligned_cols=150 Identities=17% Similarity=0.172 Sum_probs=93.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
+|+++|+.|+|||||++++.+.........+.+. ......+.. .....+.+||++|...+ . .....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~i~D~~g~~~~--------~---~~~~~ 67 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGI--DSYSKEVSIDGKPVNLEIWDTSGQERF--------D---SLRDI 67 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSE--EEEEEEEEETTEEEEEEEEEETTSGGG--------H---HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccc--ccccccccccccccccccccccccccc--------c---ccccc
Confidence 5899999999999999999987653322222212 222222333 12336889999996431 1 11123
Q ss_pred hcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHHH
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGATK 175 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~~ 175 (221)
.+..+|++++|++++++-+... ..|+..+...... ..|+++++||.|..... .....++..+....++..++..
T Consensus 68 ~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~--~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~ 145 (162)
T PF00071_consen 68 FYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPE--DIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKN 145 (162)
T ss_dssp HHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTT--TSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTT
T ss_pred cccccccccccccccccccccccccccccccccccc--cccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCC
Confidence 4577799999999985544333 5677777666442 24899999999976421 2345556665444555666666
Q ss_pred HHhHHHHHHh
Q 027618 176 LRDQQFEVDS 185 (221)
Q Consensus 176 ~~~~~~~~~~ 185 (221)
...+.+.+..
T Consensus 146 ~~~v~~~f~~ 155 (162)
T PF00071_consen 146 GENVKEIFQE 155 (162)
T ss_dssp TTTHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 6666665554
No 165
>CHL00071 tufA elongation factor Tu
Probab=99.58 E-value=3.1e-14 Score=118.73 Aligned_cols=120 Identities=15% Similarity=0.215 Sum_probs=85.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc--------------ccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (221)
+.+..+|+++|+.++|||||+++|++...... .....+.|.......+.+ .+..+.++||||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~- 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHA- 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChH-
Confidence 45569999999999999999999997532110 111245565555445545 66789999999953
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.+...+...+..+|++++|+|+.+....++...+..+... +. +++++++||+|+..
T Consensus 87 ----------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g~---~~iIvvvNK~D~~~ 142 (409)
T CHL00071 87 ----------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-GV---PNIVVFLNKEDQVD 142 (409)
T ss_pred ----------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CEEEEEEEccCCCC
Confidence 2233334455677999999999988888888888776653 32 23789999999875
No 166
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.58 E-value=3.8e-14 Score=125.23 Aligned_cols=117 Identities=17% Similarity=0.204 Sum_probs=87.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
..+.+.|+++|+.++|||||+++|.+..+... ...+.|.....+.+.+ .+..++||||||+.+|..
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~--e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~~----------- 352 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAG--EAGGITQHIGAYQVET-NGGKITFLDTPGHEAFTA----------- 352 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccc--ccCceeeeccEEEEEE-CCEEEEEEECCCCccchh-----------
Confidence 45668999999999999999999987665322 2345566666666777 678899999999876532
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.....+..+|++++|+++++....+....+..+... ..|++|++||+|+..
T Consensus 353 m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~-----~vPiIVviNKiDl~~ 403 (787)
T PRK05306 353 MRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAA-----GVPIIVAINKIDKPG 403 (787)
T ss_pred HHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc-----CCcEEEEEECccccc
Confidence 112345667999999999988877776666655432 237999999999864
No 167
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.58 E-value=2.4e-14 Score=105.88 Aligned_cols=114 Identities=20% Similarity=0.111 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|++|+|||||++++++...... ..+. ........... .+ ..+.+|||||...+... .
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~-~~~t--~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-----------~ 65 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTE-YVPT--AFDNFSVVVLV-DGKPVRLQLCDTAGQDEFDKL-----------R 65 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCc--eeeeeeEEEEE-CCEEEEEEEEECCCChhhccc-----------c
Confidence 3689999999999999999987654322 1111 11111122223 33 46788999997543221 2
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..++..+|++++|+|+.++-+... ..|+..+.... . ..|+++++||.|+..
T Consensus 66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~--~~piilv~nK~Dl~~ 118 (173)
T cd04130 66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-P--KAPIILVGTQADLRT 118 (173)
T ss_pred ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEeeChhhcc
Confidence 245678899999999986655444 35666666532 1 248999999999764
No 168
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.58 E-value=4.6e-14 Score=102.84 Aligned_cols=114 Identities=13% Similarity=0.052 Sum_probs=71.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
+|+++|++|+|||||++++++....... +|...............+.++||||... +.......
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~-----~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTI-----PTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccccc-----CccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence 4899999999999999999988753221 1222222333332456899999999653 11223345
Q ss_pred cCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+..+|++++|+|+.+..+... ..++..+.+... ....|+++|+||+|...
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEH-IKGVPVVLLANKQDLPG 115 (160)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECccccc
Confidence 567899999999985443222 222332222111 12358999999999753
No 169
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=2e-13 Score=94.82 Aligned_cols=152 Identities=16% Similarity=0.130 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
++|+++|..|+|||.|++..+...+|+....+.+.........+.. ...++.+|||.|... ++.....
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~g-ekiklqiwdtagqer-----------frsitqs 75 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNG-EKIKLQIWDTAGQER-----------FRSITQS 75 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECC-eEEEEEEeeccchHH-----------HHHHHHH
Confidence 7899999999999999999987776655433333333333333322 345789999999543 3444556
Q ss_pred hcCCCcEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhH-HHHhcccCCchhhhhHHH
Q 027618 100 AKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETL-EDYLGRECPKPLKKGATK 175 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~-~~~l~~~~~~~l~~~~~~ 175 (221)
.++.+|++++|+|+++..+.. ...|+..+.+.....+ -.++|.||.|+.+.. +..+ ++|.....--+|..++.+
T Consensus 76 yyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~drrevp~qigeefs~~qdmyfletsake 153 (213)
T KOG0095|consen 76 YYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKE 153 (213)
T ss_pred HhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccc
Confidence 677889999999999665543 3788888887644332 468999999987532 1222 333332111234466666
Q ss_pred HHhHHHHHHh
Q 027618 176 LRDQQFEVDS 185 (221)
Q Consensus 176 ~~~~~~~~~~ 185 (221)
..+..+++.+
T Consensus 154 a~nve~lf~~ 163 (213)
T KOG0095|consen 154 ADNVEKLFLD 163 (213)
T ss_pred hhhHHHHHHH
Confidence 6666665555
No 170
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.57 E-value=4.5e-14 Score=104.36 Aligned_cols=114 Identities=18% Similarity=0.105 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|++|+|||||++++++....... .+. ........+.. .+ ..+.+|||||...+....
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~-~~t--~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~----------- 65 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEY-VPT--VFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLR----------- 65 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCc--eeeeeEEEEEE-CCEEEEEEEEeCCCcccccccc-----------
Confidence 37899999999999999999987653221 111 11111112333 33 346789999976543221
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
...+..+|++++|++..++-+... ..|+..+... . ...|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~--~~~piivv~nK~Dl~~ 118 (174)
T cd04135 66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-A--PNVPYLLVGTQIDLRD 118 (174)
T ss_pred cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-C--CCCCEEEEeEchhhhc
Confidence 135677899999999986544443 3456666543 2 2348999999999754
No 171
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.57 E-value=7e-14 Score=105.65 Aligned_cols=118 Identities=16% Similarity=0.159 Sum_probs=77.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee------CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK------DGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~------~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
+|+++|.+|+|||||++++++.........+.+.+ .......+. ....+.+|||+|...+ .
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~--~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~-----------~ 68 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCS--VDVKHHTYKEGTPEEKTFFVELWDVGGSESV-----------K 68 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeee--EEEEEEEEcCCCCCCcEEEEEEEecCCchhH-----------H
Confidence 68999999999999999999876533221111111 111122221 1236889999996532 2
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-----------------ccccccEEEEEecCCCCC
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-----------------KKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~-----------------~~~~~~~ivv~tk~D~~~ 151 (221)
.....+++.+|++++|+|++++-+... ..|+..+..... .....|+++|+||.|+..
T Consensus 69 ~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 69 STRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred HHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 333456788999999999997766555 567777755311 112348999999999865
No 172
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.57 E-value=6.1e-14 Score=102.35 Aligned_cols=112 Identities=15% Similarity=0.104 Sum_probs=71.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
+|+++|.+|+|||||++++...... ... +|.........+ ....+.+|||||... +......+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~----pt~g~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~~ 64 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TTI----PTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRHY 64 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccC----CCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHH
Confidence 6899999999999999999655442 111 122222223444 667899999999743 12233456
Q ss_pred cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCC
Q 027618 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (221)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~ 151 (221)
+..+|++++|+|++++.+... ..+++.+..... ...|+++++||.|+..
T Consensus 65 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 65 FQNTQGLIFVVDSNDRERIGE--AREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred hcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 788899999999985433222 122233222211 1358999999999754
No 173
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.57 E-value=2.6e-14 Score=105.13 Aligned_cols=115 Identities=19% Similarity=0.206 Sum_probs=71.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCccee--------------------------------------------
Q 027618 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST-------------------------------------------- 57 (221)
Q Consensus 22 i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~-------------------------------------------- 57 (221)
|+++|..++|||||||+|+|....+.+..+......
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 789999999999999999999865544322110000
Q ss_pred ---------eEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHH
Q 027618 58 ---------CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSL 128 (221)
Q Consensus 58 ---------~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l 128 (221)
........+....+.|+||||+.+...... ..+..+++.+|++++|+++....+..+...+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~-------~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~ 153 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT-------EITEEYLPKADVVIFVVDANQDLTESDMEFLKQM 153 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS-------HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhH-------HHHHHhhccCCEEEEEeccCcccchHHHHHHHHH
Confidence 000011122345699999999976433333 3333444777999999999966766665555444
Q ss_pred HHHhcccccccEEEEEecC
Q 027618 129 QTLFGKKIFDYMIVVFTGG 147 (221)
Q Consensus 129 ~~~~~~~~~~~~ivv~tk~ 147 (221)
.+. ....+++|+||+
T Consensus 154 ~~~----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 154 LDP----DKSRTIFVLNKA 168 (168)
T ss_dssp HTT----TCSSEEEEEE-G
T ss_pred hcC----CCCeEEEEEcCC
Confidence 332 122489999984
No 174
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.57 E-value=3.4e-14 Score=105.65 Aligned_cols=116 Identities=21% Similarity=0.219 Sum_probs=72.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|++|+|||||++++++.......... +.......... . ...+.++||||..++. ...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~-----------~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPT---IENTFSKIIRY-KGQDYHLEIVDTAGQDEYS-----------ILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcc---hhhhEEEEEEE-CCEEEEEEEEECCChHhhH-----------HHH
Confidence 68999999999999999999977642221111 11111122222 2 2356899999975421 122
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
...+..++++++|++.++..+... ..+.+.+.+..+. ...|+++++||+|...
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHT 120 (180)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhh
Confidence 234556799999999985444333 3444555443332 2348999999999764
No 175
>COG2262 HflX GTPases [General function prediction only]
Probab=99.57 E-value=8.8e-14 Score=112.05 Aligned_cols=128 Identities=25% Similarity=0.221 Sum_probs=89.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
...+.|+++|.|+||||||+|+|++...+..+ .-..|..+......++.+..+.+-||-||.+ .-+..+..-+..-
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d--~LFATLdpttR~~~l~~g~~vlLtDTVGFI~--~LP~~LV~AFksT 265 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVAD--QLFATLDPTTRRIELGDGRKVLLTDTVGFIR--DLPHPLVEAFKST 265 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccc--cccccccCceeEEEeCCCceEEEecCccCcc--cCChHHHHHHHHH
Confidence 45589999999999999999999998875443 3345556666666665688999999999986 2233333333333
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+. ....+|+++.|+|++++.-... ....+.|.++ +.. ..|+++|+||+|++.
T Consensus 266 LE-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el-~~~-~~p~i~v~NKiD~~~ 318 (411)
T COG2262 266 LE-EVKEADLLLHVVDASDPEILEKLEAVEDVLAEI-GAD-EIPIILVLNKIDLLE 318 (411)
T ss_pred HH-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHc-CCC-CCCEEEEEecccccC
Confidence 33 2367899999999997643333 3344444554 422 258999999999986
No 176
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.57 E-value=2.3e-13 Score=94.39 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
...+++|.+|+|||||+-......+ ++.....+........++.+ ....+.+|||+|.. .++....
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtF--s~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqE-----------rFrtits 75 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTF--SGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQE-----------RFRTITS 75 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhccc--ccceEEEeeeeEEEEEeecCCcEEEEEEeecccHH-----------HHHHHHH
Confidence 4567899999999999988766544 22222223333444444441 23478899999943 3445555
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT 174 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~ 174 (221)
..++++|++++|+|++..-+... .+|++.++..+.. .|-++|.||.|..... .+....|..+...+.|..+++
T Consensus 76 tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaK 152 (198)
T KOG0079|consen 76 TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAK 152 (198)
T ss_pred HHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCccceeeehHHHHHHHHhcCchheehhhh
Confidence 67889999999999986666655 7888888887552 3789999999976432 345566776656667778888
Q ss_pred HHHhHHHHHHh
Q 027618 175 KLRDQQFEVDS 185 (221)
Q Consensus 175 ~~~~~~~~~~~ 185 (221)
+..+...++.-
T Consensus 153 e~~NvE~mF~c 163 (198)
T KOG0079|consen 153 ENENVEAMFHC 163 (198)
T ss_pred hcccchHHHHH
Confidence 87777777665
No 177
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.57 E-value=8.6e-14 Score=101.15 Aligned_cols=148 Identities=16% Similarity=0.108 Sum_probs=85.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
+|+++|++|+|||||++++++.... ....+ .+.......... . ...+.++|+||.... .....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~--~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~-----------~~~~~ 65 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFV-EEYDP--TIEDSYRKTIVV-DGETYTLDILDTAGQEEF-----------SAMRD 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-cCcCC--ChhHeEEEEEEE-CCEEEEEEEEECCChHHH-----------HHHHH
Confidence 5899999999999999999987632 22111 122222223333 3 346789999996531 12222
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT 174 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~ 174 (221)
..+..+|++++|++.++.-+..+ ..+...+...... ...|+++++||+|..... ...+..+..+.....+..++.
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 144 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAK 144 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccC
Confidence 34556799999999885433222 4445555554331 235899999999987521 233444444322234444444
Q ss_pred HHHhHHHHHH
Q 027618 175 KLRDQQFEVD 184 (221)
Q Consensus 175 ~~~~~~~~~~ 184 (221)
....+.+.++
T Consensus 145 ~~~~i~~l~~ 154 (160)
T cd00876 145 DNINIDEVFK 154 (160)
T ss_pred CCCCHHHHHH
Confidence 4444444333
No 178
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.56 E-value=9.2e-14 Score=100.61 Aligned_cols=113 Identities=20% Similarity=0.160 Sum_probs=70.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhc
Q 027618 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK 101 (221)
Q Consensus 22 i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (221)
|+++|++|||||||+|+|++........ +|.......... .+..+.++||||... +......++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~----~t~~~~~~~~~~-~~~~~~~~D~~g~~~-----------~~~~~~~~~ 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTI----PTVGFNMRKVTK-GNVTLKVWDLGGQPR-----------FRSMWERYC 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCcc----CCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence 7899999999999999999986532221 122222233444 557889999999643 112233455
Q ss_pred CCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 102 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 102 ~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+|++++|+|+++..+... ..++..+..... ....|+++|+||.|...
T Consensus 66 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~ 115 (159)
T cd04159 66 RGVNAIVYVVDAADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLPG 115 (159)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccC
Confidence 67899999999884322211 222222222111 12348999999999765
No 179
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.56 E-value=2.2e-14 Score=111.74 Aligned_cols=151 Identities=18% Similarity=0.169 Sum_probs=89.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|.+|+|||||++++++...... ..+ +........+.. .+ ..+.+|||+|...+.. ..
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~-y~p--Ti~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~~-----------~~ 65 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQ-YTP--TIEDFHRKLYSI-RGEVYQLDILDTSGNHPFPA-----------MR 65 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCC-CCC--ChhHhEEEEEEE-CCEEEEEEEEECCCChhhhH-----------HH
Confidence 3789999999999999999987665321 111 111122222333 33 4677999999754321 11
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-------ccccccEEEEEecCCCCCCC---hhhHHHHhccc-C
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-------KKIFDYMIVVFTGGDELEDN---DETLEDYLGRE-C 165 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~-------~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~-~ 165 (221)
..++..+|++++|+|++++-+... ..+++.+.+... .....|+++|+||+|+.... ...+.+++... .
T Consensus 66 ~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~ 145 (247)
T cd04143 66 RLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDEN 145 (247)
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCC
Confidence 234567799999999996554443 455555554311 11245899999999986421 23445554421 1
Q ss_pred CchhhhhHHHHHhHHHHHHh
Q 027618 166 PKPLKKGATKLRDQQFEVDS 185 (221)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~ 185 (221)
...+..++....++.++++.
T Consensus 146 ~~~~evSAktg~gI~elf~~ 165 (247)
T cd04143 146 CAYFEVSAKKNSNLDEMFRA 165 (247)
T ss_pred CEEEEEeCCCCCCHHHHHHH
Confidence 23455666555555555554
No 180
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.56 E-value=3.9e-13 Score=103.58 Aligned_cols=140 Identities=16% Similarity=0.177 Sum_probs=87.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCC---------------------------------------------
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS--------------------------------------------- 52 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~--------------------------------------------- 52 (221)
..+.++++|++|+||||++++|+|...+..+....
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 34689999999999999999999986322211000
Q ss_pred ----CcceeeEEEEEEeeCCceEEEEeCCCCCCCC--CCchHHHHHHHHHHHhhcCC-CcEEEEEEeCCCCCCHHH-HHH
Q 027618 53 ----GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS--AGSEFVGKEIVKCIGMAKDG-IHAVLVVFSVRSRFSQEE-EAA 124 (221)
Q Consensus 53 ----~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~il~v~~~~~~~~~~~-~~~ 124 (221)
+.+..+....+..+....++|+||||+.... .........+...+..++.. .+.+++|++++..+...+ ...
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 0001111112233344679999999997532 11233455566656656553 358899999886677666 455
Q ss_pred HHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcc
Q 027618 125 LHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR 163 (221)
Q Consensus 125 ~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~ 163 (221)
.+.+... ..++++|+||.|.... +....+.+++
T Consensus 185 a~~ld~~-----~~rti~ViTK~D~~~~-~~~~~~~~~~ 217 (240)
T smart00053 185 AKEVDPQ-----GERTIGVITKLDLMDE-GTDARDILEN 217 (240)
T ss_pred HHHHHHc-----CCcEEEEEECCCCCCc-cHHHHHHHhC
Confidence 5555442 3479999999999863 3335565653
No 181
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.56 E-value=2.3e-13 Score=117.33 Aligned_cols=116 Identities=18% Similarity=0.237 Sum_probs=77.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-----------------CCceEEEEeCCCCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGLF 80 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtPG~~ 80 (221)
+.+.|+++|++++|||||+|+|++...... .+.+.|.........+. ....+.+|||||+.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~--e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKR--EAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccc--cCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 346899999999999999999998865322 12223332111111110 11248899999975
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.+. ......+..+|++++|+|+++....++...+..++.. ..|+++++||+|+..
T Consensus 81 ~f~-----------~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 81 AFT-----------NLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-----KTPFVVAANKIDRIP 135 (590)
T ss_pred hHH-----------HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence 432 1222345678999999999987877777777666542 237999999999864
No 182
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.55 E-value=7.1e-14 Score=117.38 Aligned_cols=120 Identities=18% Similarity=0.256 Sum_probs=85.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc-----------------------------ccCCCCcceeeEEEEEEee
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLK 66 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~ 66 (221)
..+..+|+++|+.++|||||+++|++...... .....+.|.........+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~- 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET- 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-
Confidence 34568999999999999999999985432111 011356777777777777
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccccEEEEE
Q 027618 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (221)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (221)
.+..+.+|||||+.++. ..+...+..+|++++|+|+++ .........+..+.. ++. +++++++
T Consensus 82 ~~~~i~liDtpG~~~~~-----------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~---~~iivvi 146 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFV-----------KNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGI---NQLIVAI 146 (425)
T ss_pred CCeEEEEEECCCcccch-----------hhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCC---CeEEEEE
Confidence 78899999999975432 112223467899999999987 565666565555543 232 3689999
Q ss_pred ecCCCCC
Q 027618 145 TGGDELE 151 (221)
Q Consensus 145 tk~D~~~ 151 (221)
||+|+..
T Consensus 147 NK~Dl~~ 153 (425)
T PRK12317 147 NKMDAVN 153 (425)
T ss_pred Ecccccc
Confidence 9999864
No 183
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.55 E-value=1.8e-13 Score=100.85 Aligned_cols=118 Identities=14% Similarity=-0.005 Sum_probs=71.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
+..+|+++|.+|+|||||++++++.........+ ..........+.+ .+ ..+.++|++|...+....
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~-T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~--------- 71 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSP-TIKPRYAVNTVEV-YGQEKYLILREVGEDEVAILLN--------- 71 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCC-ccCcceEEEEEEE-CCeEEEEEEEecCCcccccccc---------
Confidence 4588999999999999999999987753111111 1111122223333 33 467789999976532211
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
...+..+|++++|+|++++.+... ..+++... ......|+++|+||+|+..
T Consensus 72 --~~~~~~~d~~llv~d~~~~~s~~~--~~~~~~~~-~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 72 --DAELAACDVACLVYDSSDPKSFSY--CAEVYKKY-FMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred --hhhhhcCCEEEEEEeCCCHHHHHH--HHHHHHHh-ccCCCCeEEEEEEcccccc
Confidence 134577899999999975432222 12222222 1112458999999999754
No 184
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.55 E-value=5.4e-14 Score=106.25 Aligned_cols=143 Identities=15% Similarity=0.008 Sum_probs=85.9
Q ss_pred EcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE--EEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhc
Q 027618 25 VGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK 101 (221)
Q Consensus 25 ~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (221)
+|..|||||||+++++....... . .+|..... ..+.+. ....+.+|||||...+. .....++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~-~---~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~-----------~l~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKK-Y---VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFG-----------GLRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCC-C---CCceeEEEEEEEEEECCEEEEEEEEECCCchhhh-----------hhhHHHh
Confidence 69999999999999986543211 1 12222222 222221 24578899999975432 2333567
Q ss_pred CCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh-hhHHHHhcccCCchhhhhHHHHHhH
Q 027618 102 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND-ETLEDYLGRECPKPLKKGATKLRDQ 179 (221)
Q Consensus 102 ~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~-~~~~~~l~~~~~~~l~~~~~~~~~~ 179 (221)
+.++++++|+|++++.+... ..|++.+.+... ..|+++|+||+|+..... ....++.....-.++..|+....++
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v 142 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNF 142 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 88899999999997665554 467777776532 348999999999753111 1111232222233445566555555
Q ss_pred HHHHHh
Q 027618 180 QFEVDS 185 (221)
Q Consensus 180 ~~~~~~ 185 (221)
.+.++.
T Consensus 143 ~~~F~~ 148 (200)
T smart00176 143 EKPFLW 148 (200)
T ss_pred HHHHHH
Confidence 555554
No 185
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.54 E-value=8.1e-14 Score=106.63 Aligned_cols=115 Identities=22% Similarity=0.315 Sum_probs=77.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccc--------------cCCCCcceeeEEEEEEee---------CCceEEEEeC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLK---------DGQVVNVIDT 76 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------~~~~~~liDt 76 (221)
+.|+++|+.++|||||+++|+........ ....+.|.........|. .+..+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 47899999999999999999765421110 111233433333333331 1567889999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (221)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (221)
||..++. ..+..++..+|++++|+|+.++.+.+....++...+. + .|+++++||+|+.
T Consensus 81 PG~~~f~-----------~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~-~----~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFS-----------SEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE-R----VKPVLVINKIDRL 138 (222)
T ss_pred CCccccH-----------HHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCcc
Confidence 9987643 2233455667999999999988887777666665542 2 3799999999986
No 186
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.54 E-value=9.5e-14 Score=104.97 Aligned_cols=115 Identities=23% Similarity=0.276 Sum_probs=73.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
+|+++|.+|+|||||++++++...... .... +.......+.+ .+ ..+.++||||...+.. ...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~-~~~t--~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~-----------~~~ 65 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPK-YRRT--VEEMHRKEYEV-GGVSLTLDILDTSGSYSFPA-----------MRK 65 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc-CCCc--hhhheeEEEEE-CCEEEEEEEEECCCchhhhH-----------HHH
Confidence 489999999999999999998765321 1111 11112223333 34 4688999999765321 122
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+..+|++++|+|+++..+... ..++..+.+.... ...|+++|+||+|...
T Consensus 66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~ 118 (198)
T cd04147 66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLE 118 (198)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEcccccc
Confidence 35677899999999985544443 4444555554332 2358999999999865
No 187
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.54 E-value=1.9e-13 Score=96.14 Aligned_cols=156 Identities=15% Similarity=0.105 Sum_probs=98.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
...++|+++|.+|+|||||+-+.+...+.+..+.+.+.........+.- +..++.+|||+|...| +..
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg-~~~KlaiWDTAGqErF-----------RtL 76 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDG-KRLKLAIWDTAGQERF-----------RTL 76 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcC-ceEEEEEEeccchHhh-----------hcc
Confidence 3458999999999999999999887765333333334444444444433 4567899999996543 345
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhhhh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKKG 172 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~~ 172 (221)
.+.+++++.++|+|+|++.+-+... ..|++.+.-..-.+ ..-.++|.||+|+-.+.. +.-.+|.++..--++..+
T Consensus 77 TpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~-diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~S 155 (209)
T KOG0080|consen 77 TPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNP-DIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECS 155 (209)
T ss_pred CHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCc-cHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcc
Confidence 5578899999999999986554443 45666665543322 123679999999764222 222345543222233356
Q ss_pred HHHHHhHHHHHHh
Q 027618 173 ATKLRDQQFEVDS 185 (221)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (221)
++.-+..+..+++
T Consensus 156 Akt~~~V~~~Fee 168 (209)
T KOG0080|consen 156 AKTRENVQCCFEE 168 (209)
T ss_pred hhhhccHHHHHHH
Confidence 6665555555554
No 188
>PLN00023 GTP-binding protein; Provisional
Probab=99.53 E-value=2.1e-13 Score=108.42 Aligned_cols=123 Identities=18% Similarity=0.203 Sum_probs=80.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee--------------CCceEEEEeCCCCCC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--------------DGQVVNVIDTPGLFD 81 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------~~~~~~liDtPG~~~ 81 (221)
.....+|+++|..|||||||++.+++.........+.+.+. ....+.+. ....+.||||+|...
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~--~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTV--GVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeE--EEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 33448999999999999999999997764222111222221 11222221 124588999999654
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc----------cccccEEEEEecCCCC
Q 027618 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK----------KIFDYMIVVFTGGDEL 150 (221)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~----------~~~~~~ivv~tk~D~~ 150 (221)
+ ..+....++.++++|+|+|++++-+... ..|++.+...... ....|++||+||+|+.
T Consensus 96 f-----------rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~ 164 (334)
T PLN00023 96 Y-----------KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA 164 (334)
T ss_pred h-----------hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc
Confidence 3 2344466888999999999986555444 5677777665210 0124799999999975
Q ss_pred C
Q 027618 151 E 151 (221)
Q Consensus 151 ~ 151 (221)
.
T Consensus 165 ~ 165 (334)
T PLN00023 165 P 165 (334)
T ss_pred c
Confidence 4
No 189
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.53 E-value=1.8e-13 Score=118.37 Aligned_cols=115 Identities=20% Similarity=0.278 Sum_probs=85.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccc--------------ccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~ 85 (221)
+.|+++|+.++|||||+++|+....... .....+.|.......+.| .+..+.+|||||+.+|.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF~-- 78 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADFG-- 78 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHHH--
Confidence 6899999999999999999986422100 012346777777778888 89999999999986532
Q ss_pred chHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
. .+...+..+|++++|+|+.+....+...++..+.+. + .|.++++||+|+..
T Consensus 79 -----~----ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~-~----ip~IVviNKiD~~~ 130 (594)
T TIGR01394 79 -----G----EVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL-G----LKPIVVINKIDRPS 130 (594)
T ss_pred -----H----HHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC-C----CCEEEEEECCCCCC
Confidence 2 223445567999999999877777777777776653 2 36899999999864
No 190
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.53 E-value=3.4e-13 Score=118.28 Aligned_cols=117 Identities=16% Similarity=0.232 Sum_probs=82.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee---CCceEEEEeCCCCCCCCCCchHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
.+.+.|+++|+.++|||||+++|++....... ..+.|.....+...+. .+..+.||||||+.++
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e--~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F----------- 308 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKE--AGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF----------- 308 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcccc--CCccccccceEEEEEEecCCceEEEEEECCcHHHH-----------
Confidence 45689999999999999999999887653322 2334444333443332 2478999999997532
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.......+..+|++++|++++++..++....+..+... ..|+++++||+|+..
T Consensus 309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~-----~iPiIVViNKiDl~~ 361 (742)
T CHL00189 309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAA-----NVPIIVAINKIDKAN 361 (742)
T ss_pred HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc-----CceEEEEEECCCccc
Confidence 12223345677999999999888777776666655432 237999999999875
No 191
>PRK12735 elongation factor Tu; Reviewed
Probab=99.52 E-value=2.6e-13 Score=112.76 Aligned_cols=119 Identities=16% Similarity=0.208 Sum_probs=82.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCccc--------------ccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAF--------------KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (221)
.+..+|+++|+.++|||||+++|++.... .......+.|.......+.+ .+..+.++||||+.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~-- 86 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHA-- 86 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHH--
Confidence 45589999999999999999999863110 01112345666655555544 66789999999963
Q ss_pred CCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
++...+...+..+|++++|+++.+....++.+.+..+... +. +++++++||+|+..
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~-gi---~~iivvvNK~Dl~~ 142 (396)
T PRK12735 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV---PYIVVFLNKCDMVD 142 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc-CC---CeEEEEEEecCCcc
Confidence 2334444556678999999999877777777666665542 32 23557899999874
No 192
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.52 E-value=9.1e-13 Score=113.99 Aligned_cols=116 Identities=18% Similarity=0.220 Sum_probs=76.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-----------------CCceEEEEeCCCC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGL 79 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtPG~ 79 (221)
.+++.|+++|++++|||||+|+|.+....... ..+.|........++. .-..+.+|||||.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~--~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKE--AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCC--CCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 35578999999999999999999887643221 2222222111111110 0012789999998
Q ss_pred CCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (221)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (221)
.++. .........+|++++|+|+++....+....+..+... ..|+++++||+|+.
T Consensus 82 e~f~-----------~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~-----~vpiIvviNK~D~~ 136 (586)
T PRK04004 82 EAFT-----------NLRKRGGALADIAILVVDINEGFQPQTIEAINILKRR-----KTPFVVAANKIDRI 136 (586)
T ss_pred HHHH-----------HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc-----CCCEEEEEECcCCc
Confidence 6542 1112344667999999999977777777777666542 23799999999975
No 193
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.52 E-value=2.3e-13 Score=120.44 Aligned_cols=121 Identities=20% Similarity=0.241 Sum_probs=88.7
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc----------------cCCCCcceeeEEEEEEeeCCceEEEEeCCC
Q 027618 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPG 78 (221)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG 78 (221)
+....++|+++|+.++|||||+|+|+........ ....+.|.........| .+..+.++||||
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG 84 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPG 84 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCC
Confidence 3445689999999999999999999753321100 01246677777778888 889999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
+.++.. + +..++..+|++++|+|+.+....++...+..+.+. ..|+++++||+|+...
T Consensus 85 ~~~~~~-------~----~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 85 HVDFTV-------E----VERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY-----EVPRIAFVNKMDKTGA 142 (689)
T ss_pred CcchhH-------H----HHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 976431 1 22344566999999999888888777777766543 2378899999998753
No 194
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.52 E-value=6.5e-13 Score=99.71 Aligned_cols=126 Identities=23% Similarity=0.287 Sum_probs=86.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccC-----CCCcceeeEEEEEEe-eCC--ceEEEEeCCCCCCCCCCchHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS-----SSGVTSTCEMQRTVL-KDG--QVVNVIDTPGLFDFSAGSEFVG 90 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~-----~~~~t~~~~~~~~~~-~~~--~~~~liDtPG~~~~~~~~~~~~ 90 (221)
.+.|+++|.+|.||||++|.+.......+... +.+.|+......... .++ -+++++|||||+|.-. ++..|
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqIn-N~ncW 124 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQIN-NDNCW 124 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccC-ccchh
Confidence 47899999999999999999987665432211 222333333222222 123 3688999999998643 44455
Q ss_pred HHHHHHHHhhc------------------CCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 91 KEIVKCIGMAK------------------DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 91 ~~~~~~~~~~~------------------~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+-+.+++...+ ..+|+++|.+..+ ..+++.|.++++.|.+. .+++-|+.|+|.+.
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v------vNvvPVIakaDtlT 198 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV------VNVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh------heeeeeEeeccccc
Confidence 55555544322 3579999999885 56899999999988885 26899999999876
No 195
>PRK00007 elongation factor G; Reviewed
Probab=99.52 E-value=1.9e-13 Score=120.91 Aligned_cols=121 Identities=19% Similarity=0.265 Sum_probs=89.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc----------------cCCCCcceeeEEEEEEeeCCceEEEEeCCCC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (221)
....++|+++|+.++|||||+++|+........ ....+.|.........| .+..+.++||||+
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~ 85 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGH 85 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCc
Confidence 455689999999999999999999742211000 02345677777777778 8899999999997
Q ss_pred CCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (221)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (221)
.++. .+ +..++..+|++++|+|+.+....++...+..+.+. + .|.++++||+|+...+
T Consensus 86 ~~f~-------~e----v~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-~----~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 86 VDFT-------IE----VERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY-K----VPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHH-------HH----HHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc-C----CCEEEEEECCCCCCCC
Confidence 6421 22 33444566999999999888899988888887764 3 3678999999988643
No 196
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.52 E-value=1.8e-13 Score=101.16 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|++|+|||||++++++....... .+... ........+ .+ ..+.+|||||...... ..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~-~~t~~--~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~-----------~~ 66 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVF--ENYVADIEV-DGKQVELALWDTAGQEDYDR-----------LR 66 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCccc--cceEEEEEE-CCEEEEEEEEeCCCchhhhh-----------cc
Confidence 68999999999999999999987653221 11111 111122333 33 3578999999754221 11
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
...+..+|++++|++++++-+... ..|+..++.... ..|+++|+||.|...
T Consensus 67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 119 (175)
T cd01870 67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRN 119 (175)
T ss_pred ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhccc
Confidence 134577899999999985543333 235555554322 348999999999764
No 197
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.52 E-value=1.9e-13 Score=106.40 Aligned_cols=124 Identities=20% Similarity=0.185 Sum_probs=92.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
.|++||-|+||||||+|+|...+. .......+|..++...+.+.....+++-|.||+....+.+.-+...+.+.+..|
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 468999999999999999998775 223455678888888888856667999999999998888888888899888887
Q ss_pred cCCCcEEEEEEeCCCCC--CHHH-H-HHHHHHHHHhcc-cccccEEEEEecCCCCC
Q 027618 101 KDGIHAVLVVFSVRSRF--SQEE-E-AALHSLQTLFGK-KIFDYMIVVFTGGDELE 151 (221)
Q Consensus 101 ~~~~~~il~v~~~~~~~--~~~~-~-~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~ 151 (221)
+.++||+|++... ++-+ . .....+. .+.. -..+|.++|.||+|..+
T Consensus 276 ----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe-~yek~L~~rp~liVaNKiD~~e 326 (366)
T KOG1489|consen 276 ----KGLLFVVDLSGKQLRNPWQQLQLLIEELE-LYEKGLADRPALIVANKIDLPE 326 (366)
T ss_pred ----ceEEEEEECCCcccCCHHHHHHHHHHHHH-HHhhhhccCceEEEEeccCchh
Confidence 7999999998441 3222 2 2222222 2222 23457999999999854
No 198
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.52 E-value=6.1e-13 Score=95.97 Aligned_cols=116 Identities=23% Similarity=0.232 Sum_probs=71.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|.+|+|||||+|++++... ... ...+.+.......... .+ ..+.+|||||..++. ...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~-----------~~~ 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKF-ITE-YKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYR-----------AIR 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-cCc-CCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccch-----------HHH
Confidence 6899999999999999999998873 222 2233444444433444 55 678899999965421 111
Q ss_pred HhhcCCCcEEEEEEeCCCC-CCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSR-FSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~-~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
......++.+++++|.... .+... ..+...+...... ..|+++++||+|+..
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRD 122 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCc
Confidence 1223344677777776533 22211 2344444443222 348999999999876
No 199
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.51 E-value=3.4e-13 Score=102.24 Aligned_cols=115 Identities=15% Similarity=0.150 Sum_probs=70.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe---eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
++|+++|++|+|||||++.|++........+ .......... ..+..+.+|||||...+ ...
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~s-----~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~-----------~~~ 64 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTS-----IEPNVATFILNSEGKGKKFRLVDVPGHPKL-----------RDK 64 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccCc-----EeecceEEEeecCCCCceEEEEECCCCHHH-----------HHH
Confidence 3689999999999999999998754322211 1122222222 13567999999997532 222
Q ss_pred HHhhcCCC-cEEEEEEeCCCCCCHHHHHHHHHHHHHhc----ccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGI-HAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~-~~il~v~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~ivv~tk~D~~~ 151 (221)
+...++.+ ++++||+|+.+.. .......+++.+.+. .....|+++++||.|+..
T Consensus 65 ~~~~~~~~~~~vV~VvD~~~~~-~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 65 LLETLKNSAKGIVFVVDSATFQ-KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred HHHHHhccCCEEEEEEECccch-hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 23344555 9999999998442 222222333322211 112458999999999875
No 200
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.51 E-value=2.4e-13 Score=99.09 Aligned_cols=144 Identities=20% Similarity=0.121 Sum_probs=89.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|++|+|||||+++++....... ..+.+ ......+.. .+ ..+.+|||+|... .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~~~---~~~~~~i~~-~~~~~~l~i~D~~g~~~-----~---------- 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQL-ESPEG---GRFKKEVLV-DGQSHLLLIRDEGGAPD-----A---------- 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCC-CCCCc---cceEEEEEE-CCEEEEEEEEECCCCCc-----h----------
Confidence 3689999999999999998876554222 11111 111123334 44 4588999999753 1
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC--C---hhhHHHHhccc-CCchhh
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED--N---DETLEDYLGRE-CPKPLK 170 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~--~---~~~~~~~l~~~-~~~~l~ 170 (221)
.....+|++++|+|.+++-+... ..|++.+..... ....|+++|+||.|+... . ....+++.++. .-.++.
T Consensus 61 -~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e 138 (158)
T cd04103 61 -QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYE 138 (158)
T ss_pred -hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEE
Confidence 13356799999999997777666 567777766532 123489999999986421 1 11223344322 234555
Q ss_pred hhHHHHHhHHHHHHh
Q 027618 171 KGATKLRDQQFEVDS 185 (221)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (221)
.++....++.+.+..
T Consensus 139 ~SAk~~~~i~~~f~~ 153 (158)
T cd04103 139 TCATYGLNVERVFQE 153 (158)
T ss_pred EecCCCCCHHHHHHH
Confidence 677766666666654
No 201
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.51 E-value=1.9e-13 Score=104.47 Aligned_cols=115 Identities=20% Similarity=0.248 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccc-----------------cCCCCcceeeEEEEEEee----CCceEEEEeCCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR-----------------ASSSGVTSTCEMQRTVLK----DGQVVNVIDTPG 78 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~-----------------~~~~~~t~~~~~~~~~~~----~~~~~~liDtPG 78 (221)
++|+++|+.|+|||||+++|++....... ....+.+.........+. ....+.+|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 46899999999999999999875432210 011223332222333221 235789999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (221)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (221)
..++. ......+..+|++++|+|+.+..+.....+++.+... ..|+++|+||+|+.
T Consensus 81 ~~~f~-----------~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFM-----------DEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILE-----GLPIVLVINKIDRL 136 (213)
T ss_pred CcchH-----------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccC
Confidence 87642 1222344567999999999867766655555544321 14799999999986
No 202
>PRK09866 hypothetical protein; Provisional
Probab=99.51 E-value=8.6e-13 Score=112.37 Aligned_cols=85 Identities=18% Similarity=0.230 Sum_probs=59.1
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 027618 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (221)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D 148 (221)
.+++|+||||+..... ..+.+.+.+ .+..+|+|+||+|+....+..+...++.+++. +. ..|+++|+||+|
T Consensus 230 ~QIIFVDTPGIhk~~~--~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K--~~PVILVVNKID 300 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAV-GQ--SVPLYVLVNKFD 300 (741)
T ss_pred CCEEEEECCCCCCccc--hHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CC--CCCEEEEEEccc
Confidence 5789999999986321 223333333 46667999999999867888888888888764 32 137999999999
Q ss_pred CCCCC---hhhHHHHhc
Q 027618 149 ELEDN---DETLEDYLG 162 (221)
Q Consensus 149 ~~~~~---~~~~~~~l~ 162 (221)
..+.. .+.+.+++.
T Consensus 301 l~dreeddkE~Lle~V~ 317 (741)
T PRK09866 301 QQDRNSDDADQVRALIS 317 (741)
T ss_pred CCCcccchHHHHHHHHH
Confidence 86422 244555543
No 203
>PLN03127 Elongation factor Tu; Provisional
Probab=99.51 E-value=4.8e-13 Score=112.37 Aligned_cols=121 Identities=15% Similarity=0.199 Sum_probs=84.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCccc----------c----cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCC
Q 027618 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAF----------K----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (221)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~----------~----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~ 80 (221)
...+..+|+++|+.++|||||+++|++.... . ......+.|.......+.+ .+.++.++||||+.
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~ 135 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHA 135 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCcc
Confidence 3456689999999999999999999743110 0 0112256677766666655 66789999999985
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
++ ...+. .....+|++++|+|+.+....++.+.+..+... +.+ .+++++||+|+..
T Consensus 136 ~f-------~~~~~----~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-gip---~iIvviNKiDlv~ 191 (447)
T PLN03127 136 DY-------VKNMI----TGAAQMDGGILVVSAPDGPMPQTKEHILLARQV-GVP---SLVVFLNKVDVVD 191 (447)
T ss_pred ch-------HHHHH----HHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CCC---eEEEEEEeeccCC
Confidence 31 22222 233457999999999878888888888777654 321 3678999999875
No 204
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.51 E-value=3.4e-13 Score=101.56 Aligned_cols=116 Identities=17% Similarity=-0.003 Sum_probs=72.2
Q ss_pred CeEEEEEcCCCCCHHHHHH-HHhCCcccccc-cCCCCccee----eEEE---------EEEeeCCceEEEEeCCCCCCCC
Q 027618 19 ERTVVLVGRTGNGKSATGN-SILGRRAFKSR-ASSSGVTST----CEMQ---------RTVLKDGQVVNVIDTPGLFDFS 83 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin-~l~~~~~~~~~-~~~~~~t~~----~~~~---------~~~~~~~~~~~liDtPG~~~~~ 83 (221)
..+|+++|.+|+|||||+. .+++....... .....+|.. .... .+.. ....+.+|||+|....
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~-~~v~l~iwDTaG~~~~- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDG-VSVSLRLWDTFGDHDK- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCC-EEEEEEEEeCCCChhh-
Confidence 3689999999999999995 55543321110 000111221 0000 1111 2357889999997531
Q ss_pred CCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+ ...+++.+|++++|+|++++.+.... .|++.++.... ..|+++|+||+|+..
T Consensus 80 ---------~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~---~~piilvgNK~DL~~ 134 (195)
T cd01873 80 ---------D---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP---RVPVILVGCKLDLRY 134 (195)
T ss_pred ---------h---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhccc
Confidence 0 12367889999999999877666553 47777766532 348999999999753
No 205
>PRK00049 elongation factor Tu; Reviewed
Probab=99.51 E-value=3.4e-13 Score=112.06 Aligned_cols=118 Identities=16% Similarity=0.187 Sum_probs=84.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (221)
.+..+|+++|+.++|||||+++|++..... ......+.|.......+.+ .+..+.++||||+.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~-- 86 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHA-- 86 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHH--
Confidence 455899999999999999999998732100 0111345666655555544 56789999999964
Q ss_pred CCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccE-EEEEecCCCCC
Q 027618 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM-IVVFTGGDELE 151 (221)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-ivv~tk~D~~~ 151 (221)
.+...+...+..+|++++|+|+.+....++...+..+... +. |. ++++||+|+..
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g~----p~iiVvvNK~D~~~ 142 (396)
T PRK00049 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFLNKCDMVD 142 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-CC----CEEEEEEeecCCcc
Confidence 2334444556788999999999878888888888777654 32 44 56899999874
No 206
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.50 E-value=3e-13 Score=104.87 Aligned_cols=129 Identities=19% Similarity=0.193 Sum_probs=91.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchH-HHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF-VGKEIVK 95 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~-~~~~~~~ 95 (221)
.....|+++|.+++|||||.|.++|.++.... ....|+.+....+-.....+++|+||||+......... ....+.+
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS--~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVS--RKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCcccccc--ccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 34579999999999999999999999986553 34445555544444436779999999999875433332 2223334
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+.+...+|.+++|+|+.+.-.......+..+.+.. ..|.++|+||.|...
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys----~ips~lvmnkid~~k 199 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS----KIPSILVMNKIDKLK 199 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh----cCCceeeccchhcch
Confidence 4566778889999999998533333456666666652 237899999999875
No 207
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.50 E-value=8.6e-13 Score=114.73 Aligned_cols=116 Identities=22% Similarity=0.305 Sum_probs=83.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccc-ccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
.|+++|+.++|||||+++|+|...... .....+.|..........+.+..+.+|||||+.+ +...+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-----------fi~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-----------FLSNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-----------HHHHHHH
Confidence 689999999999999999998653211 1223466666655555443567789999999632 2233344
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....+|++++|+++++...+++.+.+..+... +. ++++||+||+|+..
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l-gi---~~iIVVlNKiDlv~ 118 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQLT-GN---PMLTVALTKADRVD 118 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEECCccCC
Confidence 56778999999999988888888777766543 42 24789999999875
No 208
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.50 E-value=1.1e-12 Score=104.41 Aligned_cols=128 Identities=24% Similarity=0.309 Sum_probs=87.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc----cCC--CCcceeeEEEEEEee-C--CceEEEEeCCCCCCCCCCch
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR----ASS--SGVTSTCEMQRTVLK-D--GQVVNVIDTPGLFDFSAGSE 87 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~----~~~--~~~t~~~~~~~~~~~-~--~~~~~liDtPG~~~~~~~~~ 87 (221)
+-.++|+++|++|.||||++|+|++....... ..+ ...+........... + ...++++||||++++-.. .
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN-s 99 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN-S 99 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc-c
Confidence 44689999999999999999999998542221 111 123333333333221 2 246889999999986443 4
Q ss_pred HHHHHHHHHHHhhc------------------CCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 027618 88 FVGKEIVKCIGMAK------------------DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (221)
Q Consensus 88 ~~~~~~~~~~~~~~------------------~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D 148 (221)
..|.-+..++.... ..+|++||.+..+ +.+++.|..+++.|.+. .++|.|+.|+|
T Consensus 100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI~KaD 173 (373)
T COG5019 100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVIAKAD 173 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeeeeccc
Confidence 44555554443221 4579999999864 57999999888888764 27999999999
Q ss_pred CCC
Q 027618 149 ELE 151 (221)
Q Consensus 149 ~~~ 151 (221)
.+.
T Consensus 174 ~lT 176 (373)
T COG5019 174 TLT 176 (373)
T ss_pred cCC
Confidence 986
No 209
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.50 E-value=1.4e-13 Score=96.93 Aligned_cols=132 Identities=19% Similarity=0.191 Sum_probs=79.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
.+|+++|++|||||||+++|.+..... ..|.... + .+ .+|||||=+- ++ ..+...+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~------~KTq~i~-----~-~~---~~IDTPGEyi---E~----~~~y~aLi~ 59 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRY------KKTQAIE-----Y-YD---NTIDTPGEYI---EN----PRFYHALIV 59 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCc------CccceeE-----e-cc---cEEECChhhe---eC----HHHHHHHHH
Confidence 689999999999999999999865411 1122222 2 11 2699999662 12 333444444
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC--CCChhhHHHHhcc-cCCchhhhhHHHH
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL--EDNDETLEDYLGR-ECPKPLKKGATKL 176 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~--~~~~~~~~~~l~~-~~~~~l~~~~~~~ 176 (221)
....+|++++|.|++++...-...+. .-+..|++-|+||+|+. ..+.....++|+. .....|..|+..-
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~fa--------~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~ 131 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPGFA--------SMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTG 131 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCchhh--------cccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCC
Confidence 44567999999999855432222221 22234899999999998 3233445556654 2233344444444
Q ss_pred HhHHH
Q 027618 177 RDQQF 181 (221)
Q Consensus 177 ~~~~~ 181 (221)
+.+.+
T Consensus 132 eGi~e 136 (143)
T PF10662_consen 132 EGIEE 136 (143)
T ss_pred cCHHH
Confidence 44433
No 210
>PRK12739 elongation factor G; Reviewed
Probab=99.50 E-value=4.1e-13 Score=118.81 Aligned_cols=120 Identities=22% Similarity=0.295 Sum_probs=88.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc----------------ccCCCCcceeeEEEEEEeeCCceEEEEeCCCC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS----------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (221)
....++|+++|+.++|||||+++|+....... .....+.|.........| .+..+.++||||+
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~ 83 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGH 83 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCH
Confidence 44568999999999999999999975321100 012346777777777888 8999999999997
Q ss_pred CCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
.++ .. .+..++..+|++++|+|+.+....++...+..+.+. + .|.++++||+|+...
T Consensus 84 ~~f-------~~----e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-~----~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VDF-------TI----EVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-G----VPRIVFVNKMDRIGA 140 (691)
T ss_pred HHH-------HH----HHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 542 12 233445566999999999988888888887777653 2 368899999998863
No 211
>PRK10218 GTP-binding protein; Provisional
Probab=99.50 E-value=7.7e-13 Score=114.47 Aligned_cols=116 Identities=19% Similarity=0.227 Sum_probs=85.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccc-c-------------ccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFK-S-------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~-~-------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (221)
.++|+++|+.++|||||+++|+...... . .....+.|.......+.| .+..+.+|||||..++..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFGG 83 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhHH
Confidence 4899999999999999999999643211 1 012345666666677777 888999999999876532
Q ss_pred CchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.+..+++.+|++++|+|+.+....+....+..+.+. + .|.++++||+|+..
T Consensus 84 -----------~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~-g----ip~IVviNKiD~~~ 134 (607)
T PRK10218 84 -----------EVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY-G----LKPIVVINKVDRPG 134 (607)
T ss_pred -----------HHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc-C----CCEEEEEECcCCCC
Confidence 223455677999999999877777777777666543 2 36789999999864
No 212
>PRK12736 elongation factor Tu; Reviewed
Probab=99.50 E-value=5.6e-13 Score=110.75 Aligned_cols=120 Identities=16% Similarity=0.218 Sum_probs=83.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (221)
..+..+|+++|+.++|||||+++|++..... ......+.|.......+.. .+..+.++||||+.+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHH
Confidence 4456899999999999999999998742110 0111345666655444444 567899999999542
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+...+......+|++++|+|+.+....++...+..+... +. +++++++||+|+..
T Consensus 88 -----------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g~---~~~IvviNK~D~~~ 142 (394)
T PRK12736 88 -----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-GV---PYLVVFLNKVDLVD 142 (394)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC---CEEEEEEEecCCcc
Confidence 222333344677999999999877888887777776654 32 24789999999874
No 213
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.49 E-value=1.3e-12 Score=113.26 Aligned_cols=115 Identities=22% Similarity=0.273 Sum_probs=83.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
.|+++|+.++|||||+++|+|..... ......+.|.........+ .+..+.+|||||..+ +...+..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe~-----------f~~~~~~ 69 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHEK-----------FISNAIA 69 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCHHH-----------HHHHHHh
Confidence 68999999999999999999854211 1112345666666666666 668899999999532 2333444
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.+..+|++++|+|+++...++..+.+..+.. .+. +++++|+||+|+..
T Consensus 70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi---~~iIVVlNK~Dlv~ 117 (581)
T TIGR00475 70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGI---PHTIVVITKADRVN 117 (581)
T ss_pred hhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCCCCC
Confidence 5677899999999997777777766665543 232 24999999999875
No 214
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.49 E-value=6.8e-13 Score=113.44 Aligned_cols=119 Identities=16% Similarity=0.180 Sum_probs=82.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc--c------------------cCCCCcceeeEEEEEEeeCCceEEEEe
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS--R------------------ASSSGVTSTCEMQRTVLKDGQVVNVID 75 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~--~------------------~~~~~~t~~~~~~~~~~~~~~~~~liD 75 (221)
....++|+++|+.++|||||+++|+....... + ....+.+.........| .+..+.++|
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliD 86 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLD 86 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEE
Confidence 34568999999999999999999864321110 0 01124455555566777 888999999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 76 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 76 tPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
|||+.++. ..+..++..+|++++|+|+.+........+++.++.. ..|+++++||+|+..
T Consensus 87 TPG~~df~-----------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~-----~~PiivviNKiD~~~ 146 (527)
T TIGR00503 87 TPGHEDFS-----------EDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLR-----DTPIFTFMNKLDRDI 146 (527)
T ss_pred CCChhhHH-----------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEECccccC
Confidence 99986432 2223345667999999999877777766666554431 247999999999864
No 215
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.49 E-value=6.6e-13 Score=110.40 Aligned_cols=120 Identities=16% Similarity=0.245 Sum_probs=82.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCccc----------c----cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAF----------K----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~----------~----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (221)
..+..+|+++|+.++|||||+++|++.... . ......+.|.......... .+..+.++||||+.+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD 87 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHH
Confidence 455699999999999999999999853110 0 0111245666655544444 567899999999753
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+ ...+......+|++++|+|+.+....++.+.+..+... +. +++++++||+|+..
T Consensus 88 f-----------~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 88 Y-----------VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV-GV---PYIVVFLNKCDMVD 142 (394)
T ss_pred H-----------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CEEEEEEEecccCC
Confidence 2 12223344567999999999977877777777776543 32 24667899999875
No 216
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.48 E-value=4e-13 Score=113.75 Aligned_cols=123 Identities=12% Similarity=0.153 Sum_probs=84.0
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc-------------------------------cCCCCcceeeEEE
Q 027618 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------------------------ASSSGVTSTCEMQ 61 (221)
Q Consensus 13 ~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-------------------------------~~~~~~t~~~~~~ 61 (221)
.+......+|+++|+.++|||||+++|+........ ....+.|......
T Consensus 21 ~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~ 100 (474)
T PRK05124 21 AQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYR 100 (474)
T ss_pred hccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEE
Confidence 334567799999999999999999999866432111 0112455566555
Q ss_pred EEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEE
Q 027618 62 RTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 141 (221)
Q Consensus 62 ~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 141 (221)
...+ .+..+.++||||+.+ +...+...+..+|++++|+|+.+....++...+..+.. ++. ++++
T Consensus 101 ~~~~-~~~~i~~iDTPGh~~-----------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~---~~iI 164 (474)
T PRK05124 101 YFST-EKRKFIIADTPGHEQ-----------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI---KHLV 164 (474)
T ss_pred Eecc-CCcEEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---CceE
Confidence 5666 677899999999532 22222233477799999999987776666555444443 342 3689
Q ss_pred EEEecCCCCC
Q 027618 142 VVFTGGDELE 151 (221)
Q Consensus 142 vv~tk~D~~~ 151 (221)
+++||+|+..
T Consensus 165 vvvNKiD~~~ 174 (474)
T PRK05124 165 VAVNKMDLVD 174 (474)
T ss_pred EEEEeecccc
Confidence 9999999874
No 217
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.48 E-value=6.6e-13 Score=101.66 Aligned_cols=120 Identities=20% Similarity=0.094 Sum_probs=71.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
....+|+++|++|||||||++.++..........+.+............ ....+.++||||...+. ..
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~i~i~~~Dt~g~~~~~-----------~~ 74 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNC-GPICFNVWDTAGQEKFG-----------GL 74 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECC-eEEEEEEEECCCchhhh-----------hh
Confidence 3458999999999999999976544333211111111111111111111 33578899999965421 11
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....+..++++++|+|++++.+... ..|+..+.+... ..|+++++||+|...
T Consensus 75 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 75 RDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE---NIPIVLVGNKVDVKD 127 (215)
T ss_pred hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccCcc
Confidence 1234456799999999986665544 455555554422 247889999999753
No 218
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.48 E-value=2.8e-13 Score=97.42 Aligned_cols=156 Identities=12% Similarity=0.078 Sum_probs=101.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
..++|+++|.+|+|||||+|.+...++......+.+..-......+.- ....+.+|||.|...|.. .-
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~-~~vtlQiWDTAGQERFqs-----------Lg 75 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDD-RSVTLQIWDTAGQERFQS-----------LG 75 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcC-eEEEEEEEecccHHHhhh-----------cc
Confidence 348999999999999999999998876443333333333333333332 445688999999765432 22
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHH-HHHhc-ccccccEEEEEecCCCCCCC-----hhhHHHHhcc-cCCch
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSL-QTLFG-KKIFDYMIVVFTGGDELEDN-----DETLEDYLGR-ECPKP 168 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l-~~~~~-~~~~~~~ivv~tk~D~~~~~-----~~~~~~~l~~-~~~~~ 168 (221)
...++++|..++|++++..-+.+. ..|-+.+ ...-. .+-.-|++|++||.|.-... ....+++.+. ....+
T Consensus 76 ~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipy 155 (210)
T KOG0394|consen 76 VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPY 155 (210)
T ss_pred cceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCcee
Confidence 357899999999999985544443 3333333 33221 23344899999999975421 2345666644 44556
Q ss_pred hhhhHHHHHhHHHHHHh
Q 027618 169 LKKGATKLRDQQFEVDS 185 (221)
Q Consensus 169 l~~~~~~~~~~~~~~~~ 185 (221)
+..+++...+..+.++.
T Consensus 156 fEtSAK~~~NV~~AFe~ 172 (210)
T KOG0394|consen 156 FETSAKEATNVDEAFEE 172 (210)
T ss_pred EEecccccccHHHHHHH
Confidence 77888887777777665
No 219
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.47 E-value=2.5e-13 Score=97.07 Aligned_cols=113 Identities=21% Similarity=0.205 Sum_probs=69.0
Q ss_pred EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee---CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 24 l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
++|++|+|||||+|++++.........+ |. ......... ....+.++|+||..... ......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~---t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYET---TI-IDFYSKTIEVDGKKVKLQIWDTAGQERFR-----------SLRRLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCccccc---ch-hheeeEEEEECCEEEEEEEEecCChHHHH-----------hHHHHH
Confidence 5799999999999999988752121111 11 222222221 25678999999976422 111345
Q ss_pred cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.+.+|++++|+++....+......+.............|+++++||+|...
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 677899999999985444443322201111112233458999999999875
No 220
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.47 E-value=8.1e-13 Score=98.99 Aligned_cols=113 Identities=18% Similarity=0.138 Sum_probs=71.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|++|+|||||+++++....... ..+ ...........+ .+ ..+.++||||...+....
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~-~~~--t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~----------- 66 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEE-YHP--TVFENYVTDCRV-DGKPVQLALWDTAGQEEYERLR----------- 66 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-cCC--cccceEEEEEEE-CCEEEEEEEEECCCChhccccc-----------
Confidence 5899999999999999999985544221 111 111111122222 32 357899999976432211
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (221)
...+..+|++++|+++++.-+... ..|+..++.... ..|+++|+||+|+.
T Consensus 67 ~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~---~~piilvgnK~Dl~ 118 (187)
T cd04129 67 PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP---NVPVILVGLKKDLR 118 (187)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhh
Confidence 124567899999999985444333 356777765433 25899999999974
No 221
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=5.8e-13 Score=109.21 Aligned_cols=131 Identities=17% Similarity=0.195 Sum_probs=92.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
..+..|+++|+|++|||||+|+|+........ ...|+|.......+.. +|.+++++||+|+-+. ..+.+...-...
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS-pv~GTTRDaiea~v~~-~G~~v~L~DTAGiRe~--~~~~iE~~gI~r 341 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVS-PVPGTTRDAIEAQVTV-NGVPVRLSDTAGIREE--SNDGIEALGIER 341 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeC-CCCCcchhhheeEeec-CCeEEEEEeccccccc--cCChhHHHhHHH
Confidence 34589999999999999999999998875554 3557788877777777 9999999999999872 122222222233
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHH-hccccc------ccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTL-FGKKIF------DYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~-~~~~~~------~~~ivv~tk~D~~~ 151 (221)
.......+|++++|+|+....+.++....+.+... -|.... .+++++.||.|...
T Consensus 342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s 403 (531)
T KOG1191|consen 342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVS 403 (531)
T ss_pred HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccC
Confidence 33455677999999999655555554444444332 121222 57999999999875
No 222
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.47 E-value=1.1e-12 Score=112.03 Aligned_cols=120 Identities=15% Similarity=0.199 Sum_probs=82.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCccccc--c------------------cCCCCcceeeEEEEEEeeCCceEEEEeC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS--R------------------ASSSGVTSTCEMQRTVLKDGQVVNVIDT 76 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~--~------------------~~~~~~t~~~~~~~~~~~~~~~~~liDt 76 (221)
...++|+++|+.++|||||.++|+....... + ....+.+.........| ++..+.+|||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDT 86 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDT 86 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEEC
Confidence 4568999999999999999999874221100 0 01123444455556677 8889999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (221)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (221)
||..++. .+ +..++..+|++++|+|+.+........+++..... ..|+++++||+|+...+
T Consensus 87 PG~~df~-------~~----~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~-----~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 87 PGHEDFS-------ED----TYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR-----DTPIFTFINKLDRDGRE 147 (526)
T ss_pred CCchhhH-------HH----HHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc-----CCCEEEEEECCcccccC
Confidence 9987543 11 22344567999999999877777666666555432 24799999999987533
No 223
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.47 E-value=9.4e-14 Score=97.39 Aligned_cols=153 Identities=18% Similarity=0.128 Sum_probs=105.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
.++++++|..-+|||||+-..+...+.....++...........+.- ....+.+|||+|...|..- =+
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed-~ra~L~IWDTAGQErfHAL-----------GP 80 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVED-CRADLHIWDTAGQERFHAL-----------GP 80 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccccccc-ceeeeeeeeccchHhhhcc-----------Cc
Confidence 48999999999999999988887665433322211111112222222 4456889999997654321 13
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT 174 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~ 174 (221)
.++++.++.|+|+|++++-+.+. +.|+..|+..+|..+ .++||.||.|+-++. .+..+.|.......+...+++
T Consensus 81 IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk 158 (218)
T KOG0088|consen 81 IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAK 158 (218)
T ss_pred eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccc
Confidence 56788999999999998887777 789999999999876 689999999976432 234566766544445567777
Q ss_pred HHHhHHHHHHh
Q 027618 175 KLRDQQFEVDS 185 (221)
Q Consensus 175 ~~~~~~~~~~~ 185 (221)
+-..+.++++.
T Consensus 159 ~N~Gi~elFe~ 169 (218)
T KOG0088|consen 159 DNVGISELFES 169 (218)
T ss_pred cccCHHHHHHH
Confidence 76677666665
No 224
>PLN03126 Elongation factor Tu; Provisional
Probab=99.47 E-value=1.7e-12 Score=109.76 Aligned_cols=120 Identities=15% Similarity=0.198 Sum_probs=85.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (221)
..+..+|+++|+.++|||||+++|++..... ......+.|.........+ .+..+.++||||+.+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~ 156 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHAD 156 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHH
Confidence 4556889999999999999999998632110 1122345566555555556 778999999999643
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+...+...+..+|++++|+|+.+....+..+.+..+... |. +++++++||+|+..
T Consensus 157 -----------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-gi---~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 157 -----------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-GV---PNMVVFLNKQDQVD 211 (478)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEecccccC
Confidence 222333444577999999999988888887777766543 43 24889999999875
No 225
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.46 E-value=1.1e-12 Score=113.77 Aligned_cols=117 Identities=22% Similarity=0.242 Sum_probs=77.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCccccc------c-------cCCCCcceeeEEEEEEee--C--CceEEEEeCCCCCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS------R-------ASSSGVTSTCEMQRTVLK--D--GQVVNVIDTPGLFD 81 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~------~-------~~~~~~t~~~~~~~~~~~--~--~~~~~liDtPG~~~ 81 (221)
.++|+++|+.++|||||+++|+....... . ....+.|.........|. . ...+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 47899999999999999999987532111 0 012355555554555452 1 25789999999876
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+. ..+..++..+|++++|+|+++..+.++...+....+ . ..|+++|+||+|+..
T Consensus 83 F~-----------~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~--~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 83 FS-----------YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---N--DLEIIPVINKIDLPS 136 (595)
T ss_pred HH-----------HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---c--CCCEEEEEECcCCCc
Confidence 42 122334556799999999987777766544433332 1 237999999999754
No 226
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.45 E-value=9.7e-13 Score=97.51 Aligned_cols=127 Identities=16% Similarity=0.205 Sum_probs=86.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
....+|+++|+.||||||+++.|....... ..+|.......+.+ .+..+.++|.+|-... +..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~~-~~~~~~~~d~gG~~~~-----------~~~ 74 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIKY-KGYSLTIWDLGGQESF-----------RPL 74 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEEE-TTEEEEEEEESSSGGG-----------GGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceeee-CcEEEEEEeccccccc-----------ccc
Confidence 566899999999999999999998765422 23355556666777 8889999999996432 133
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCC-ChhhHHHHhc
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED-NDETLEDYLG 162 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~-~~~~~~~~l~ 162 (221)
+..+++.+|+++||+|..+.-.. .+..+.|.+.+... ...|++|++||.|.... ....+.+++.
T Consensus 75 w~~y~~~~~~iIfVvDssd~~~l--~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~ 141 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDPERL--QEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLG 141 (175)
T ss_dssp GGGGHTTESEEEEEEETTGGGGH--HHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTT
T ss_pred ceeeccccceeEEEEecccceee--cccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhh
Confidence 44567888999999999853322 22333344443321 23589999999997652 2344555553
No 227
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.45 E-value=1.5e-12 Score=99.95 Aligned_cols=115 Identities=19% Similarity=0.256 Sum_probs=75.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccc-----------------------------cccCCCCcceeeEEEEEEeeCCceE
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMQRTVLKDGQVV 71 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~~~~~ 71 (221)
.|+++|+.++|||||+.+|+...... ......+.|.........+ .+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 47999999999999999986432110 0112345666666677777 88899
Q ss_pred EEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccccEEEEE
Q 027618 72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (221)
Q Consensus 72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (221)
.++||||+.++ ...+...+..+|++++|+|+.+. ...+....+.... ..+ .+|+++++
T Consensus 80 ~liDtpG~~~~-----------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~iiivv 144 (219)
T cd01883 80 TILDAPGHRDF-----------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLG---VKQLIVAV 144 (219)
T ss_pred EEEECCChHHH-----------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcC---CCeEEEEE
Confidence 99999996432 12222345667999999999863 2223333333332 222 24789999
Q ss_pred ecCCCCC
Q 027618 145 TGGDELE 151 (221)
Q Consensus 145 tk~D~~~ 151 (221)
||+|+..
T Consensus 145 NK~Dl~~ 151 (219)
T cd01883 145 NKMDDVT 151 (219)
T ss_pred Ecccccc
Confidence 9999873
No 228
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.7e-12 Score=110.78 Aligned_cols=121 Identities=23% Similarity=0.301 Sum_probs=89.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
..+|+++|+|++||||++|+|+|.+.... .-.|.|.........+ .+..+.++|.||.++...... .+.+.+-..
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~Vg--NwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~--DE~Var~~l 77 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVG--NWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSE--DEKVARDFL 77 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceec--CCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCc--hHHHHHHHH
Confidence 36799999999999999999999986433 4567888888888888 888899999999997543322 223332221
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
....+|+++-|+|+. .+..+..-.++.+ +. | .|+++++|.+|..+.
T Consensus 78 -l~~~~D~ivnVvDAt-nLeRnLyltlQLl-E~-g----~p~ilaLNm~D~A~~ 123 (653)
T COG0370 78 -LEGKPDLIVNVVDAT-NLERNLYLTLQLL-EL-G----IPMILALNMIDEAKK 123 (653)
T ss_pred -hcCCCCEEEEEcccc-hHHHHHHHHHHHH-Hc-C----CCeEEEeccHhhHHh
Confidence 136779999999998 6655555554443 32 2 369999999998753
No 229
>PRK13351 elongation factor G; Reviewed
Probab=99.44 E-value=1.6e-12 Score=115.26 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=85.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCccccc-------c---------cCCCCcceeeEEEEEEeeCCceEEEEeCCCCC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS-------R---------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~-------~---------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~ 80 (221)
...++|+++|+.|+|||||+++|+....... + ....+.|.........| .+..+.+|||||..
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~ 84 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHI 84 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcH
Confidence 3458999999999999999999985421100 0 01234555666667777 88899999999986
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
++. ..+..++..+|++++|+|+.+.........++.+... ..|+++++||+|+...
T Consensus 85 df~-----------~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFT-----------GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY-----GIPRLIFINKMDRVGA 140 (687)
T ss_pred HHH-----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEECCCCCCC
Confidence 532 2233455667999999999878877777666665443 2378999999998864
No 230
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=4.6e-12 Score=88.48 Aligned_cols=151 Identities=16% Similarity=0.124 Sum_probs=97.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
-.+++++|+.|.|||.|+..............+.+.........+.. +..++.+|||+|. +.++...+
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg-K~vKLQIWDTAGQ-----------ErFRSVtR 76 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG-KTVKLQIWDTAGQ-----------ERFRSVTR 76 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecC-cEEEEEEeecccH-----------HHHHHHHH
Confidence 36899999999999999999887665433333333333333344433 5568999999994 45667777
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCChhh---HHHHhcccCCchhhhhHH
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDET---LEDYLGRECPKPLKKGAT 174 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~---~~~~l~~~~~~~l~~~~~ 174 (221)
.+++++.+.++|+|++.+-+.+. ..|+...+-+.... ..++++.||.|+......+ ...|.+++.-.++..++.
T Consensus 77 sYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n--IvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~ 154 (214)
T KOG0086|consen 77 SYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSAL 154 (214)
T ss_pred HHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCc--EEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeeccc
Confidence 88999999999999986666554 56666666553333 2577888999976533322 234555443344445554
Q ss_pred HHHhHHHHH
Q 027618 175 KLRDQQFEV 183 (221)
Q Consensus 175 ~~~~~~~~~ 183 (221)
..++..+.+
T Consensus 155 TGeNVEEaF 163 (214)
T KOG0086|consen 155 TGENVEEAF 163 (214)
T ss_pred ccccHHHHH
Confidence 444444433
No 231
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.43 E-value=6.1e-12 Score=96.63 Aligned_cols=116 Identities=20% Similarity=0.148 Sum_probs=75.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccc------------CCCCccee------------------------eEEEEEE
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRA------------SSSGVTST------------------------CEMQRTV 64 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~------------~~~~~t~~------------------------~~~~~~~ 64 (221)
+|+++|+.++|||||++.++......... ...+.|.. .......
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 47899999999999999998543211000 00111110 0001122
Q ss_pred eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEE
Q 027618 65 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (221)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (221)
. .+..+.++||||+.++ .+.....+.. ..+|++++|++++......+...+.++... + .|+++|+
T Consensus 81 ~-~~~~i~liDtpG~~~~-------~~~~~~~~~~--~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~----ip~ivvv 145 (224)
T cd04165 81 K-SSKLVTFIDLAGHERY-------LKTTLFGLTG--YAPDYAMLVVAANAGIIGMTKEHLGLALAL-N----IPVFVVV 145 (224)
T ss_pred e-CCcEEEEEECCCcHHH-------HHHHHHhhcc--cCCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEEEEE
Confidence 2 5678999999996432 2222222111 357999999999888898888888888764 3 3689999
Q ss_pred ecCCCCC
Q 027618 145 TGGDELE 151 (221)
Q Consensus 145 tk~D~~~ 151 (221)
||+|+..
T Consensus 146 NK~D~~~ 152 (224)
T cd04165 146 TKIDLAP 152 (224)
T ss_pred ECccccC
Confidence 9999876
No 232
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=9.5e-12 Score=86.37 Aligned_cols=121 Identities=12% Similarity=0.070 Sum_probs=79.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEE-EeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRT-VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
+-..++.++|.+.+||||++.+.++......-.++-+..- ....+ .......+.+|||.|... ++.
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidF--KvKTvyr~~kRiklQiwDTagqEr-----------yrt 85 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDF--KVKTVYRSDKRIKLQIWDTAGQER-----------YRT 85 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeE--EEeEeeecccEEEEEEEecccchh-----------hhH
Confidence 4457999999999999999999998876433233333322 22222 111345789999999653 334
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
.....+++++++|+++|..+.-+... +.|+-.++-..- -..++++|.||||+-.+
T Consensus 86 iTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw--~naqvilvgnKCDmd~e 141 (193)
T KOG0093|consen 86 ITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSW--DNAQVILVGNKCDMDSE 141 (193)
T ss_pred HHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeec--cCceEEEEecccCCccc
Confidence 44567789999999999974433333 445555544321 23389999999998764
No 233
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.43 E-value=4.6e-12 Score=99.88 Aligned_cols=123 Identities=21% Similarity=0.178 Sum_probs=91.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhc
Q 027618 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK 101 (221)
Q Consensus 22 i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (221)
|++||-|++|||||++.++..+.-. .....+|..+....+....+..+++-|.||+.+..+...-+..++.+.+.+|
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKI--adYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt- 238 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKI--ADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT- 238 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcc--cCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh-
Confidence 5799999999999999999876532 3345677778877777646778999999999987666667888888888888
Q ss_pred CCCcEEEEEEeCCCCCC----HHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 102 DGIHAVLVVFSVRSRFS----QEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 102 ~~~~~il~v~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.+++.|+|++ ... .++ ..+...|...-..-..+|.+||+||+|...
T Consensus 239 ---~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~ 289 (369)
T COG0536 239 ---RVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL 289 (369)
T ss_pred ---heeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc
Confidence 6999999997 322 233 334444544423334568999999999553
No 234
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.43 E-value=3.3e-13 Score=110.71 Aligned_cols=133 Identities=22% Similarity=0.233 Sum_probs=91.3
Q ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHH
Q 027618 12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGK 91 (221)
Q Consensus 12 ~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~ 91 (221)
+++.....++++++|-+++||||++|.++...+ .......+|....+.+..+ +-..++++||||+.+.......+.+
T Consensus 161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradv--evqpYaFTTksL~vGH~dy-kYlrwQViDTPGILD~plEdrN~IE 237 (620)
T KOG1490|consen 161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD--EVQPYAFTTKLLLVGHLDY-KYLRWQVIDTPGILDRPEEDRNIIE 237 (620)
T ss_pred CCCCCCCcCeEEEecCCCCCcHhhccccccccc--ccCCcccccchhhhhhhhh-heeeeeecCCccccCcchhhhhHHH
Confidence 466677789999999999999999999987764 2222334555555566666 7788999999999985543332222
Q ss_pred HHHHHHHhhcCCCcEEEEEEeCCC--CCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 92 EIVKCIGMAKDGIHAVLVVFSVRS--RFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~--~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
..++.....-..++||+.|+++ +.+..+ .+....++.+|... |.|+|+||+|.+..
T Consensus 238 --mqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK---~~IlvlNK~D~m~~ 296 (620)
T KOG1490|consen 238 --MQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANK---VTILVLNKIDAMRP 296 (620)
T ss_pred --HHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCC---ceEEEeecccccCc
Confidence 1222212222358899999984 445554 46666777776644 79999999998864
No 235
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.42 E-value=5.8e-12 Score=96.55 Aligned_cols=119 Identities=17% Similarity=0.136 Sum_probs=80.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
.+|+++|+.|+|||||++++.+........ +...................+.+|||+|..+ +......
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~-----------~~~~~~~ 73 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYP-PTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE-----------YRSLRPE 73 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCC-CceeeeeEEEEEEeCCCEEEEEeecCCCHHH-----------HHHHHHH
Confidence 899999999999999999999887643332 1111122222222211245688999999653 3345556
Q ss_pred hcCCCcEEEEEEeCCCC--CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 100 AKDGIHAVLVVFSVRSR--FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
...+++++++|++.... .......|.+.+....+. ..|+++|.||+|+...
T Consensus 74 y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 74 YYRGANGILIVYDSTLRESSDELTEEWLEELRELAPD--DVPILLVGNKIDLFDE 126 (219)
T ss_pred HhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCC--CceEEEEecccccccc
Confidence 77889999999998742 333336777777766432 2389999999998863
No 236
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.42 E-value=3.9e-12 Score=106.06 Aligned_cols=116 Identities=15% Similarity=0.160 Sum_probs=81.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccc-------------------------------cCCCCcceeeEEEEEEeeCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR-------------------------------ASSSGVTSTCEMQRTVLKDG 68 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~ 68 (221)
.+|+++|+.++|||||+++|+........ ....+.|.........+ .+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence 47899999999999999998754321110 11234556666666666 77
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 027618 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (221)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D 148 (221)
..+.++||||+.+ +...+...+..+|++++|+|+.+....++.+.+..+... +. +++++++||+|
T Consensus 80 ~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~---~~iivviNK~D 144 (406)
T TIGR02034 80 RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GI---RHVVLAVNKMD 144 (406)
T ss_pred eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CC---CcEEEEEEecc
Confidence 8999999999643 222223355677999999999888877776666555543 42 36899999999
Q ss_pred CCC
Q 027618 149 ELE 151 (221)
Q Consensus 149 ~~~ 151 (221)
+..
T Consensus 145 ~~~ 147 (406)
T TIGR02034 145 LVD 147 (406)
T ss_pred ccc
Confidence 874
No 237
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.42 E-value=3.7e-12 Score=111.87 Aligned_cols=121 Identities=13% Similarity=0.130 Sum_probs=82.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCccccc--------------c-----------------cCCCCcceeeEEEEE
Q 027618 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKS--------------R-----------------ASSSGVTSTCEMQRT 63 (221)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~--------------~-----------------~~~~~~t~~~~~~~~ 63 (221)
+..+..+|+++|++++|||||+++|+....... + ....+.|........
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 344557899999999999999999987543211 0 011244555555566
Q ss_pred EeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 027618 64 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV 143 (221)
Q Consensus 64 ~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv 143 (221)
.+ .+..+.|+||||+.+ .. ..+......+|++++|+|+.+....++...+..+... +. ++++++
T Consensus 100 ~~-~~~~~~liDtPG~~~-------f~----~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~---~~iivv 163 (632)
T PRK05506 100 AT-PKRKFIVADTPGHEQ-------YT----RNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GI---RHVVLA 163 (632)
T ss_pred cc-CCceEEEEECCChHH-------HH----HHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CC---CeEEEE
Confidence 66 778899999999642 12 2222345677999999999877776666655555443 32 368899
Q ss_pred EecCCCCC
Q 027618 144 FTGGDELE 151 (221)
Q Consensus 144 ~tk~D~~~ 151 (221)
+||+|+..
T Consensus 164 vNK~D~~~ 171 (632)
T PRK05506 164 VNKMDLVD 171 (632)
T ss_pred EEeccccc
Confidence 99999874
No 238
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.41 E-value=4.8e-12 Score=106.38 Aligned_cols=120 Identities=20% Similarity=0.256 Sum_probs=79.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc-----------------------------ccCCCCcceeeEEEEEEee
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLK 66 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~ 66 (221)
..+..+|+++|+.++|||||+++|+....... .....+.|.........+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~- 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET- 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-
Confidence 34568999999999999999999985321100 011235666666666666
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC---CCHHHHHHHHHHHHHhcccccccEEEE
Q 027618 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR---FSQEEEAALHSLQTLFGKKIFDYMIVV 143 (221)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ivv 143 (221)
.+..+.+|||||..+ +...+...+..+|++++|+|++++ ........+..+ ..++. ++++++
T Consensus 83 ~~~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~---~~iIVv 147 (426)
T TIGR00483 83 DKYEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGI---NQLIVA 147 (426)
T ss_pred CCeEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCC---CeEEEE
Confidence 678899999999542 222333345678999999999866 322223322222 22332 379999
Q ss_pred EecCCCCC
Q 027618 144 FTGGDELE 151 (221)
Q Consensus 144 ~tk~D~~~ 151 (221)
+||+|+..
T Consensus 148 iNK~Dl~~ 155 (426)
T TIGR00483 148 INKMDSVN 155 (426)
T ss_pred EEChhccC
Confidence 99999864
No 239
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.41 E-value=3e-12 Score=111.05 Aligned_cols=113 Identities=21% Similarity=0.252 Sum_probs=74.8
Q ss_pred cCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCc
Q 027618 26 GRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIH 105 (221)
Q Consensus 26 G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (221)
|.+|+|||||+|+++|.... .+ ...+.|.........+ ++..+.++||||.++...... .+.+.... .....+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~-v~-n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~--~e~v~~~~-l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT-VG-NWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSL--EEEVARDY-LLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe-ec-CCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccch--HHHHHHHH-HhhcCCC
Confidence 89999999999999998642 22 3445666666666767 777899999999987544321 12222221 1235679
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 106 AVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 106 ~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
++++|+|+++ ... ......++.+. ..|+++++||+|..+
T Consensus 75 vvI~VvDat~-ler-~l~l~~ql~~~-----~~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 75 LVVNVVDASN-LER-NLYLTLQLLEL-----GIPMILALNLVDEAE 113 (591)
T ss_pred EEEEEecCCc-chh-hHHHHHHHHhc-----CCCEEEEEehhHHHH
Confidence 9999999983 332 22222333321 248999999999864
No 240
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=6.3e-12 Score=100.79 Aligned_cols=127 Identities=25% Similarity=0.272 Sum_probs=82.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc----cC-CCCcceeeEEEEEEe-eCC--ceEEEEeCCCCCCCCCCchHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR----AS-SSGVTSTCEMQRTVL-KDG--QVVNVIDTPGLFDFSAGSEFV 89 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~----~~-~~~~t~~~~~~~~~~-~~~--~~~~liDtPG~~~~~~~~~~~ 89 (221)
-.++++++|++|.|||||||+|++....... .. ....|.......... .++ .+++|+||||+++.-.. ...
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdn-s~~ 98 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDN-SNC 98 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccc-ccc
Confidence 3489999999999999999999988543220 11 111122222222222 122 36889999999986433 222
Q ss_pred HHHHH--------HHHHh-------hc--CCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 90 GKEIV--------KCIGM-------AK--DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 90 ~~~~~--------~~~~~-------~~--~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
++-+. +++.. .. ..+|++||.+... .++.+.|..+++.+... .+++.|+.|+|.+.
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~------vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK------VNLIPVIAKADTLT 172 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc------ccccceeeccccCC
Confidence 33232 32211 11 2679999999875 46999998888877663 26999999999986
No 241
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.40 E-value=6.2e-12 Score=88.86 Aligned_cols=114 Identities=17% Similarity=0.230 Sum_probs=87.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
...+|.++|..||||||+++.+.+... ....+|.-.+..+..+ ++..+.++|.-|. ..++.++
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~-~~~~L~iwDvGGq-----------~~lr~~W 77 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEY-KGYTLNIWDVGGQ-----------KTLRSYW 77 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEe-cceEEEEEEcCCc-----------chhHHHH
Confidence 468999999999999999999999863 3445677788888888 8999999998884 3466777
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-c-ccccEEEEEecCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK-K-IFDYMIVVFTGGDEL 150 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~ivv~tk~D~~ 150 (221)
+.++...|++++|+|..++...++ ....|++.+.. . +-.|++|+.||.|.-
T Consensus 78 ~nYfestdglIwvvDssD~~r~~e--~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 78 KNYFESTDGLIWVVDSSDRMRMQE--CKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred HHhhhccCeEEEEEECchHHHHHH--HHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 888889999999999987766655 22333333221 2 223799999999976
No 242
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.40 E-value=4.9e-12 Score=109.84 Aligned_cols=119 Identities=21% Similarity=0.252 Sum_probs=78.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc-------------cCCCCcceeeEEEEEEee----CCceEEEEeCCCC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLK----DGQVVNVIDTPGL 79 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~----~~~~~~liDtPG~ 79 (221)
...+.|+++|+.++|||||+.+|+........ ....+.|.........|. ....+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 34589999999999999999999764321100 112345555544455552 1467899999998
Q ss_pred CCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.++. .+ +..++..+|++++|+|++++...++...+..+.+ . ..|+++|+||+|+..
T Consensus 85 ~dF~-------~~----v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~--~lpiIvViNKiDl~~ 140 (600)
T PRK05433 85 VDFS-------YE----VSRSLAACEGALLVVDASQGVEAQTLANVYLALE---N--DLEIIPVLNKIDLPA 140 (600)
T ss_pred HHHH-------HH----HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---C--CCCEEEEEECCCCCc
Confidence 7642 12 2234456699999999987777666544443332 1 237999999999764
No 243
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=3.6e-12 Score=105.73 Aligned_cols=123 Identities=18% Similarity=0.240 Sum_probs=100.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
.+++.|-++|+-..|||||+.+|-+..+... ...++|.....+.+..+.|..++|+||||+..|..+..
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~--E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRa--------- 219 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAG--EAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRA--------- 219 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehh--hcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHh---------
Confidence 4678999999999999999999988876433 46789999999999998999999999999876543322
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhH
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL 157 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~ 157 (221)
+-....|.+++|+.++|...++..+.+++.+.. ..|++|.+||+|+-..+.+.+
T Consensus 220 --RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A-----~VpiVvAinKiDkp~a~pekv 273 (683)
T KOG1145|consen 220 --RGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA-----NVPIVVAINKIDKPGANPEKV 273 (683)
T ss_pred --ccCccccEEEEEEEccCCccHhHHHHHHHHHhc-----CCCEEEEEeccCCCCCCHHHH
Confidence 344566999999999999999999999888774 348999999999876544433
No 244
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.39 E-value=2.5e-12 Score=100.63 Aligned_cols=88 Identities=19% Similarity=0.249 Sum_probs=64.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
-+++|+|.+++|||||+|.|++..--.. ....+|..+......| ++-.++++|+||+...........+++...
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva--~y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~g~grG~~vlsv--- 137 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVA--DYPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASSGRGRGRQVLSV--- 137 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCcccc--ccCceecccccceEee-cCceEEEEcCcccccCcccCCCCcceeeee---
Confidence 6899999999999999999999874222 3445566666677777 999999999999986444333223333333
Q ss_pred hcCCCcEEEEEEeCC
Q 027618 100 AKDGIHAVLVVFSVR 114 (221)
Q Consensus 100 ~~~~~~~il~v~~~~ 114 (221)
.+.+|++++|+|+.
T Consensus 138 -~R~ADlIiiVld~~ 151 (365)
T COG1163 138 -ARNADLIIIVLDVF 151 (365)
T ss_pred -eccCCEEEEEEecC
Confidence 35569999999965
No 245
>PTZ00416 elongation factor 2; Provisional
Probab=99.39 E-value=2.2e-12 Score=116.07 Aligned_cols=120 Identities=19% Similarity=0.230 Sum_probs=84.4
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc--------------cCCCCcceeeEEEEEEee---------CCceE
Q 027618 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLK---------DGQVV 71 (221)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------~~~~~ 71 (221)
+....++|+++|+.++|||||+++|++....... ....+.|.........|. .+..+
T Consensus 15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i 94 (836)
T PTZ00416 15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLI 94 (836)
T ss_pred CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEE
Confidence 3556789999999999999999999875432111 111233333333334442 14578
Q ss_pred EEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618 72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (221)
Q Consensus 72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (221)
.++||||+.++. ..+..++..+|++++|+|+.+.+..++...++.+.+. ..|+++++||+|+.
T Consensus 95 ~liDtPG~~~f~-----------~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-----~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 95 NLIDSPGHVDFS-----------SEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE-----RIRPVLFINKVDRA 157 (836)
T ss_pred EEEcCCCHHhHH-----------HHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-----CCCEEEEEEChhhh
Confidence 999999987532 2334556778999999999988998888887777653 23799999999987
No 246
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=5.5e-12 Score=104.83 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=100.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
+.+.|.++|+--.|||||+..|-+.++... ...+.|.+...+.+.+. ....++|+||||+..|..+..
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~--EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRa-------- 73 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRA-------- 73 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccc--cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHh--------
Confidence 457899999999999999999988887433 46788999998888884 347899999999877643322
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhc
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~ 162 (221)
.-..-.|.+++|+++++.+.++..+.+++++.. ..|++|..||+|+...++..+..-++
T Consensus 74 ---RGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a-----~vP~iVAiNKiDk~~~np~~v~~el~ 132 (509)
T COG0532 74 ---RGASVTDIAILVVAADDGVMPQTIEAINHAKAA-----GVPIVVAINKIDKPEANPDKVKQELQ 132 (509)
T ss_pred ---cCCccccEEEEEEEccCCcchhHHHHHHHHHHC-----CCCEEEEEecccCCCCCHHHHHHHHH
Confidence 333456999999999999999999999999875 33799999999999755554444443
No 247
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.38 E-value=1.8e-12 Score=105.13 Aligned_cols=119 Identities=24% Similarity=0.267 Sum_probs=67.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCc-ceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGV-TSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
.+..|+++|.+|+|||||||+|.|..--..+..+.|. .+......+..+....+++||.||.+......+ +..+.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~----~Yl~~ 109 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPE----EYLKE 109 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HH----HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHH----HHHHH
Confidence 4589999999999999999999875432233333332 122223334444667899999999986443333 22222
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~ 149 (221)
+ .+...|.+|++ ... +++..+....+.+++. |. ++++|-||+|.
T Consensus 110 ~--~~~~yD~fiii-~s~-rf~~ndv~La~~i~~~-gK----~fyfVRTKvD~ 153 (376)
T PF05049_consen 110 V--KFYRYDFFIII-SSE-RFTENDVQLAKEIQRM-GK----KFYFVRTKVDS 153 (376)
T ss_dssp T--TGGG-SEEEEE-ESS-S--HHHHHHHHHHHHT-T-----EEEEEE--HHH
T ss_pred c--cccccCEEEEE-eCC-CCchhhHHHHHHHHHc-CC----cEEEEEecccc
Confidence 1 23445866654 445 8999999888888875 33 69999999995
No 248
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.37 E-value=1.5e-11 Score=94.64 Aligned_cols=112 Identities=19% Similarity=0.187 Sum_probs=75.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
..++..|+++|++|+|||||+|.|++...........+. . ..... .+..+.++||||.. ..+..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~---i--~i~~~-~~~~i~~vDtPg~~----------~~~l~ 99 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP---I--TVVTG-KKRRLTFIECPNDI----------NAMID 99 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc---E--EEEec-CCceEEEEeCCchH----------HHHHH
Confidence 466789999999999999999999876321111111111 1 11122 67789999999742 22222
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
. ...+|++++|+|+.......+..++..+.+. +.+ .+++|+||+|...
T Consensus 100 ~----ak~aDvVllviDa~~~~~~~~~~i~~~l~~~-g~p---~vi~VvnK~D~~~ 147 (225)
T cd01882 100 I----AKVADLVLLLIDASFGFEMETFEFLNILQVH-GFP---RVMGVLTHLDLFK 147 (225)
T ss_pred H----HHhcCEEEEEEecCcCCCHHHHHHHHHHHHc-CCC---eEEEEEeccccCC
Confidence 2 3556999999999878888777777777653 322 3566999999874
No 249
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.37 E-value=1.4e-11 Score=103.74 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=80.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccc-----------------------------cccCCCCcceeeEEEEEEee
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMQRTVLK 66 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~ 66 (221)
..+..+|+++|+.++|||||+.+|+...... ......+.|.........+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~- 82 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET- 82 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-
Confidence 3455899999999999999999887522100 0012335666666666666
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC-------CHHHHHHHHHHHHHhccccccc
Q 027618 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-------SQEEEAALHSLQTLFGKKIFDY 139 (221)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~ 139 (221)
.+..+.++||||+.+ +...+...+..+|++++|+|+.+.. ..+..+.+..+... |.+ +
T Consensus 83 ~~~~i~lIDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-gi~---~ 147 (446)
T PTZ00141 83 PKYYFTIIDAPGHRD-----------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-GVK---Q 147 (446)
T ss_pred CCeEEEEEECCChHH-----------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc-CCC---e
Confidence 788999999999653 2233334456779999999998654 34555555555443 433 5
Q ss_pred EEEEEecCCC
Q 027618 140 MIVVFTGGDE 149 (221)
Q Consensus 140 ~ivv~tk~D~ 149 (221)
+++++||+|.
T Consensus 148 iiv~vNKmD~ 157 (446)
T PTZ00141 148 MIVCINKMDD 157 (446)
T ss_pred EEEEEEcccc
Confidence 8899999994
No 250
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.36 E-value=2e-12 Score=95.03 Aligned_cols=119 Identities=16% Similarity=0.240 Sum_probs=68.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEE-EEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR-TVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
...|+++|++|+|||+|+..|.......+..+. ...... .....+..+.+||+||+..-. .++...+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-----e~n~~~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~~ 70 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-----ENNIAYNVNNSKGKKLRLVDIPGHPRLR-------SKLLDEL 70 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-----SEEEECCGSSTCGTCECEEEETT-HCCC-------HHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-----cCCceEEeecCCCCEEEEEECCCcHHHH-------HHHHHhh
Confidence 468999999999999999999877543332221 111111 111245679999999987532 1222221
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcc----cccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK----KIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ivv~tk~D~~~ 151 (221)
. ..+.+.+|+||+|.. .+...-....+.|...+-. ....|++|+.||.|...
T Consensus 71 ~-~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 71 K-YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp H-HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred h-chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 1 234568999999987 3433445555555554432 23458999999999875
No 251
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.36 E-value=6.4e-11 Score=85.59 Aligned_cols=132 Identities=17% Similarity=0.224 Sum_probs=96.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCccccc-----ccCCCC---cceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS-----RASSSG---VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF 88 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~-----~~~~~~---~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~ 88 (221)
....+|+++|+.++||||++..+........ ..+..+ .|.........+..+..+.+++|||...|.
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~----- 82 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFK----- 82 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHH-----
Confidence 3457899999999999999999988764322 223333 666677777777344789999999976532
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhcc
Q 027618 89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGR 163 (221)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~ 163 (221)
-.+....+++.++++++|.+...+......++.+..... .|++|..||.|+.... .+.+.+++..
T Consensus 83 ------fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a~ppe~i~e~l~~ 148 (187)
T COG2229 83 ------FMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDALPPEKIREALKL 148 (187)
T ss_pred ------HHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCCCCHHHHHHHHHh
Confidence 333345677889999999886777777777777766422 4899999999987643 4567787764
No 252
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.36 E-value=3.3e-12 Score=113.45 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=79.7
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCccc--------------ccccCCCCcceeeEE----EEEEeeCCceEEEEeC
Q 027618 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAF--------------KSRASSSGVTSTCEM----QRTVLKDGQVVNVIDT 76 (221)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~--------------~~~~~~~~~t~~~~~----~~~~~~~~~~~~liDt 76 (221)
+....++|+++|+.++|||||+++|+..... .......+.|..... ....+ .+..+.++||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDT 93 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDT 93 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeC
Confidence 3445689999999999999999998753110 000011223333222 12344 6778999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
||+.++. ..+..++..+|++++|+|+.+....++...++.+.+. ..|.++++||+|+..
T Consensus 94 PG~~~f~-----------~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 94 PGHVDFG-----------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE-----NVKPVLFINKVDRLI 152 (720)
T ss_pred CCccccH-----------HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc-----CCCEEEEEEChhccc
Confidence 9998753 1223455667999999999877777776666654432 225789999999864
No 253
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.34 E-value=2.6e-11 Score=101.19 Aligned_cols=122 Identities=16% Similarity=0.230 Sum_probs=75.9
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeeEEEEEEee-------------------------CC
Q 027618 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLK-------------------------DG 68 (221)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~-------------------------~~ 68 (221)
...+..+|+++|+.++|||||+.+|++..... ......+.|.........+. ..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 34455999999999999999999997742110 11112334443322111110 02
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (221)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~ 147 (221)
..+.++||||..+ +...+......+|++++|+|+.+.. .......+..+.. .+. +++++|+||+
T Consensus 85 ~~i~liDtPG~~~-----------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK~ 149 (411)
T PRK04000 85 RRVSFVDAPGHET-----------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNKI 149 (411)
T ss_pred cEEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEee
Confidence 5789999999532 2223333445679999999998665 5555555555543 232 3689999999
Q ss_pred CCCC
Q 027618 148 DELE 151 (221)
Q Consensus 148 D~~~ 151 (221)
|+..
T Consensus 150 Dl~~ 153 (411)
T PRK04000 150 DLVS 153 (411)
T ss_pred cccc
Confidence 9875
No 254
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.34 E-value=5.3e-12 Score=113.77 Aligned_cols=121 Identities=19% Similarity=0.247 Sum_probs=84.2
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc--------------cCCCCcceeeEEEEEEee-------------
Q 027618 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLK------------- 66 (221)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~------------- 66 (221)
.+....++|+++|+.++|||||+++|+........ ....+.|.........|.
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER 93 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence 34566799999999999999999999865432111 011234444434444442
Q ss_pred --CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEE
Q 027618 67 --DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (221)
Q Consensus 67 --~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (221)
.+..+.++||||+.+|. .++ ..++..+|+.++|+|+.++...+....++.+.+. ..|.++++
T Consensus 94 ~~~~~~inliDtPGh~dF~-------~e~----~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~-----~~p~i~~i 157 (843)
T PLN00116 94 DGNEYLINLIDSPGHVDFS-------SEV----TAALRITDGALVVVDCIEGVCVQTETVLRQALGE-----RIRPVLTV 157 (843)
T ss_pred CCCceEEEEECCCCHHHHH-------HHH----HHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC-----CCCEEEEE
Confidence 25578899999986532 222 3445666999999999989888888877776553 23789999
Q ss_pred ecCCCC
Q 027618 145 TGGDEL 150 (221)
Q Consensus 145 tk~D~~ 150 (221)
||+|+.
T Consensus 158 NK~D~~ 163 (843)
T PLN00116 158 NKMDRC 163 (843)
T ss_pred ECCccc
Confidence 999997
No 255
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.33 E-value=2.4e-11 Score=101.44 Aligned_cols=119 Identities=15% Similarity=0.222 Sum_probs=73.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc-ccCCCCcceeeEEEEEE--------------e-----------eCCceE
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTV--------------L-----------KDGQVV 71 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~-~~~~~~~t~~~~~~~~~--------------~-----------~~~~~~ 71 (221)
+..+|+++|+.++|||||+++|++...... .....+.|......... . ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 457899999999999999999987532111 01112223222211100 0 014578
Q ss_pred EEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618 72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (221)
Q Consensus 72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (221)
.++||||..+ +...+......+|++++|+|+++.. ..+..+.+..+. .++. +++++++||+|+.
T Consensus 83 ~liDtPGh~~-----------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~gi---~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 83 SFVDAPGHET-----------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-IIGI---KNIVIVQNKIDLV 147 (406)
T ss_pred EEEECCCHHH-----------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-HcCC---CeEEEEEEccccC
Confidence 9999999642 2222333345679999999998665 555555555443 3332 3689999999987
Q ss_pred C
Q 027618 151 E 151 (221)
Q Consensus 151 ~ 151 (221)
.
T Consensus 148 ~ 148 (406)
T TIGR03680 148 S 148 (406)
T ss_pred C
Confidence 5
No 256
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.33 E-value=9.9e-12 Score=103.86 Aligned_cols=123 Identities=18% Similarity=0.203 Sum_probs=86.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
+....||+++|..|+||||||-+|+....+...+.......-+ .. ..+......++||+.-.+ .. .
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--ad-vtPe~vpt~ivD~ss~~~----~~-------~ 71 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--AD-VTPENVPTSIVDTSSDSD----DR-------L 71 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--Cc-cCcCcCceEEEecccccc----hh-------H
Confidence 4456899999999999999999999888765443322211111 11 122455688999985332 11 3
Q ss_pred HHHhhcCCCcEEEEEEeCCCCC--CHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRF--SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
++....+.+|++++|+.+++.- ..-...|+-.+++.+|.....|+|+|.||+|...+
T Consensus 72 ~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 72 CLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred HHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 3334445669999999887433 33347999999999988888899999999998864
No 257
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.32 E-value=5.5e-11 Score=91.18 Aligned_cols=124 Identities=15% Similarity=0.152 Sum_probs=73.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
+|+++|+.|+||||..+.+.+...+.. ...-+.|.......+.+.....+.+||.||..++-..- +.......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~------~~~~~~~i 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY------FNSQREEI 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT------HTCCHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc------ccccHHHH
Confidence 689999999999999999887654433 23445677777777765355689999999998643220 00011134
Q ss_pred cCCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 101 KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 101 ~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+..+++++||+|+. +.+...-....+.+..+.......++.+++.|+|.+.
T Consensus 74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS 125 (232)
T ss_dssp HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-
T ss_pred HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC
Confidence 57779999999998 3333333333333333333233447999999999886
No 258
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.29 E-value=2.2e-11 Score=91.47 Aligned_cols=153 Identities=20% Similarity=0.116 Sum_probs=93.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
..+|+++|.+|+|||+|....++..+... ..++..........+.. ....+.++||+|..++....+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~-y~ptied~y~k~~~v~~-~~~~l~ilDt~g~~~~~~~~~----------- 69 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVED-YDPTIEDSYRKELTVDG-EVCMLEILDTAGQEEFSAMRD----------- 69 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccc-cCCCccccceEEEEECC-EEEEEEEEcCCCcccChHHHH-----------
Confidence 47899999999999999988777665333 22222233333333332 334677999999655443332
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCChhhH---HHHhcccCCchhhhhHH
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL---EDYLGRECPKPLKKGAT 174 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~---~~~l~~~~~~~l~~~~~ 174 (221)
.+....|++++|++++++.+.+. ..+.+.+.+..+.. ..|+++|+||+|+........ .++.....-.++..+++
T Consensus 70 ~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~-~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak 148 (196)
T KOG0395|consen 70 LYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRD-DVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAK 148 (196)
T ss_pred HhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcC-CCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeecc
Confidence 45666799999999998888777 45555664443332 358999999999875222222 22222211224455555
Q ss_pred HHHhHHHHHHh
Q 027618 175 KLRDQQFEVDS 185 (221)
Q Consensus 175 ~~~~~~~~~~~ 185 (221)
.-..+.+.+..
T Consensus 149 ~~~~v~~~F~~ 159 (196)
T KOG0395|consen 149 LNYNVDEVFYE 159 (196)
T ss_pred CCcCHHHHHHH
Confidence 44455554443
No 259
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3.5e-11 Score=105.21 Aligned_cols=121 Identities=21% Similarity=0.253 Sum_probs=94.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc----------------cCCCCcceeeEEEEEEeeCC-ceEEEEeCCC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDG-QVVNVIDTPG 78 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~-~~~~liDtPG 78 (221)
....+.|+++|+..+|||||..+|+........ ....+.|......+..| .+ ..+++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCC
Confidence 445699999999999999999888765432211 11246778888788888 75 9999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (221)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (221)
+-||....+ .+++..|+.++|+++.+...++....+++..+. ..|.++++||+|+...+
T Consensus 86 HVDFt~EV~-----------rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~-----~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 86 HVDFTIEVE-----------RSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY-----GVPRILFVNKMDRLGAD 144 (697)
T ss_pred ccccHHHHH-----------HHHHhhcceEEEEECCCCeeecHHHHHHHHhhc-----CCCeEEEEECccccccC
Confidence 999763322 455555999999999999999998888888775 23799999999998643
No 260
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.28 E-value=2.9e-11 Score=95.04 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=61.2
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc----------------eEEEEeCCCCCCCCCC
Q 027618 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ----------------VVNVIDTPGLFDFSAG 85 (221)
Q Consensus 22 i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~~~liDtPG~~~~~~~ 85 (221)
|+++|.+++|||||+|+|++...... ...++|..+....+.++..+ .+.++|+||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~--n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAA--NYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccc--cccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 58999999999999999999876322 33456666666666552221 4899999999865444
Q ss_pred chHHHHHHHHHHHhhcCCCcEEEEEEeCC
Q 027618 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (221)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (221)
.+.+..++... .+.+|++++|+++.
T Consensus 79 ~~glg~~fL~~----i~~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLSH----IREVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHHH----HHhCCEEEEEEeCc
Confidence 44444444444 44569999999863
No 261
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.28 E-value=5.6e-11 Score=84.03 Aligned_cols=155 Identities=14% Similarity=0.048 Sum_probs=93.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
..+++++|.+-+|||||+...+..+.+.-.-.+.+..-........-....++.+|||+|.. .++...+
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqe-----------rfrsitk 76 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQE-----------RFRSITK 76 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchH-----------HHHHHHH
Confidence 47899999999999999999987776332211111111110011111134578899999954 3445555
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT 174 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~ 174 (221)
..++..=++++|+|.+++-+.+. ..|++..+-..+.+...-+.+|.+|+|+.... .+..+.+.+...-.+...++.
T Consensus 77 syyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak 156 (213)
T KOG0091|consen 77 SYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAK 156 (213)
T ss_pred HHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEeccc
Confidence 66677779999999987877776 66777766665644444567899999987532 223344444322223334554
Q ss_pred HHHhHHHHHH
Q 027618 175 KLRDQQFEVD 184 (221)
Q Consensus 175 ~~~~~~~~~~ 184 (221)
..-+.++.+.
T Consensus 157 ~g~NVeEAF~ 166 (213)
T KOG0091|consen 157 NGCNVEEAFD 166 (213)
T ss_pred CCCcHHHHHH
Confidence 4444444443
No 262
>PTZ00258 GTP-binding protein; Provisional
Probab=99.27 E-value=5e-11 Score=97.77 Aligned_cols=92 Identities=18% Similarity=0.199 Sum_probs=64.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC----------------CceEEEEeCCCCC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLF 80 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtPG~~ 80 (221)
....+|+++|.|++|||||+|+|++...... ..+++|..+....+.++. ...+.++||||+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~--n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAE--NFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCccccc--CCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 3447899999999999999999998875322 335566677776665532 2248999999998
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCC
Q 027618 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (221)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (221)
......+.+..++...+ +.+|++++|++..
T Consensus 97 ~ga~~g~gLg~~fL~~I----r~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHI----RAVDGIYHVVRAF 126 (390)
T ss_pred cCCcchhHHHHHHHHHH----HHCCEEEEEEeCC
Confidence 64444344555555444 4559999999973
No 263
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=6e-11 Score=98.64 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=104.0
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc-------------cCCCCcceeeEEEEEEeeCC---ceEEEEeCCC
Q 027618 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLKDG---QVVNVIDTPG 78 (221)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~~~---~~~~liDtPG 78 (221)
|.++.+.++++.+-..|||||..+|+........ ....|+|...+..+..| .+ ..+.+|||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify-~~~~~ylLNLIDTPG 134 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFY-KDGQSYLLNLIDTPG 134 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEE-EcCCceEEEeecCCC
Confidence 3355688999999999999999998655432111 13457888888888888 55 6789999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHH
Q 027618 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLE 158 (221)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~ 158 (221)
+.||..+.. .++..++++|+|+|+.++...+....+-...+. +. .+|.|+||+|+-..+.+.++
T Consensus 135 HvDFs~EVs-----------Rslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-~L----~iIpVlNKIDlp~adpe~V~ 198 (650)
T KOG0462|consen 135 HVDFSGEVS-----------RSLAACDGALLVVDASQGVQAQTVANFYLAFEA-GL----AIIPVLNKIDLPSADPERVE 198 (650)
T ss_pred cccccceeh-----------ehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-CC----eEEEeeeccCCCCCCHHHHH
Confidence 999986654 344445999999999988887775444333332 22 48999999999877665554
Q ss_pred HHhcc----cCCchhhhhHHHHHhHHHHHH
Q 027618 159 DYLGR----ECPKPLKKGATKLRDQQFEVD 184 (221)
Q Consensus 159 ~~l~~----~~~~~l~~~~~~~~~~~~~~~ 184 (221)
.-+.+ ...+.+..+++...+..+.++
T Consensus 199 ~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~ 228 (650)
T KOG0462|consen 199 NQLFELFDIPPAEVIYVSAKTGLNVEELLE 228 (650)
T ss_pred HHHHHHhcCCccceEEEEeccCccHHHHHH
Confidence 43332 333444455554444444433
No 264
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.26 E-value=7.2e-11 Score=95.84 Aligned_cols=89 Identities=19% Similarity=0.159 Sum_probs=62.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC----------------ceEEEEeCCCCCCCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFDFS 83 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG~~~~~ 83 (221)
.+|+++|.+++|||||+|+|++..... ...+++|..+....+.++.. ..+.++|+||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v--~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEA--ANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCee--cccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 689999999999999999999987422 23345666666655554221 258999999998644
Q ss_pred CCchHHHHHHHHHHHhhcCCCcEEEEEEeCC
Q 027618 84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (221)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (221)
...+.+..++... ++.+|++++|+++.
T Consensus 81 ~~g~glg~~fL~~----i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLAN----IREVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHH----HHhCCEEEEEEeCC
Confidence 4333444444444 45569999999974
No 265
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.25 E-value=1.1e-10 Score=95.07 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=83.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc--------------ccCCCC---cceeeEE---EEEEeeCC----ceE
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSG---VTSTCEM---QRTVLKDG----QVV 71 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~--------------~~~~~~---~t~~~~~---~~~~~~~~----~~~ 71 (221)
++....|+++|+.++|||||||++.+..+.+. ..+..| .|+.+.. ..+..... .++
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 34568999999999999999999999832211 122334 5666655 33333233 689
Q ss_pred EEEeCCCCCCCCCCchHHHHH--------------HHHH----HHhhcC-CCcEEEEEE-eCC------CCCCHHHHHHH
Q 027618 72 NVIDTPGLFDFSAGSEFVGKE--------------IVKC----IGMAKD-GIHAVLVVF-SVR------SRFSQEEEAAL 125 (221)
Q Consensus 72 ~liDtPG~~~~~~~~~~~~~~--------------~~~~----~~~~~~-~~~~il~v~-~~~------~~~~~~~~~~~ 125 (221)
.++||+|+.+.......-... +..+ ...... +++..++|. |.+ +.+...+.+++
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 999999998632211111111 0000 111222 668888888 653 45777788999
Q ss_pred HHHHHHhcccccccEEEEEecCCCCC
Q 027618 126 HSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 126 ~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+.|++. ..|+++|+|+.|-..
T Consensus 174 ~eLk~~-----~kPfiivlN~~dp~~ 194 (492)
T TIGR02836 174 EELKEL-----NKPFIILLNSTHPYH 194 (492)
T ss_pred HHHHhc-----CCCEEEEEECcCCCC
Confidence 999886 348999999999553
No 266
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.23 E-value=2.5e-11 Score=108.16 Aligned_cols=122 Identities=19% Similarity=0.271 Sum_probs=81.5
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc--------------cCCCCcceeeEEEEEEe--e-CCceEEEEeC
Q 027618 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVL--K-DGQVVNVIDT 76 (221)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~--~-~~~~~~liDt 76 (221)
.+....+.|+++|+.++|||||+.+|+........ ....+.|.........| . .+..+.|+||
T Consensus 15 ~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDt 94 (731)
T PRK07560 15 KNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDT 94 (731)
T ss_pred hchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcC
Confidence 34456789999999999999999999754321110 00112333333333322 1 3567899999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
||+.++. ..+..++..+|++++|+|+......++...++...+. + .|.++++||+|+..
T Consensus 95 PG~~df~-----------~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~-~----~~~iv~iNK~D~~~ 153 (731)
T PRK07560 95 PGHVDFG-----------GDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE-R----VKPVLFINKVDRLI 153 (731)
T ss_pred CCccChH-----------HHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc-C----CCeEEEEECchhhc
Confidence 9998742 2333445666999999999888888887777765443 2 25789999999863
No 267
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.21 E-value=1.7e-10 Score=94.34 Aligned_cols=119 Identities=20% Similarity=0.287 Sum_probs=93.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCccccc--------------ccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (221)
-+.|+++.+-..|||||+..|+.+..--. -....++|.-..-..+.| ++.++.++||||+.+|.+
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADFGG 83 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADFGG 83 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCccc
Confidence 37899999999999999999987753110 012357788777778888 999999999999999987
Q ss_pred CchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCh
Q 027618 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND 154 (221)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 154 (221)
..+ ..+.-+|++++++|+.+..-++.+..++...+. |. +.|||+||+|+....+
T Consensus 84 EVE-----------Rvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~-gL----~PIVVvNKiDrp~Arp 137 (603)
T COG1217 84 EVE-----------RVLSMVDGVLLLVDASEGPMPQTRFVLKKALAL-GL----KPIVVINKIDRPDARP 137 (603)
T ss_pred hhh-----------hhhhhcceEEEEEEcccCCCCchhhhHHHHHHc-CC----CcEEEEeCCCCCCCCH
Confidence 665 455667999999999999999998877666554 32 4789999999886543
No 268
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=2.7e-11 Score=85.21 Aligned_cols=169 Identities=12% Similarity=0.033 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe--e------CCceEEEEeCCCCCCCCCCchHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--K------DGQVVNVIDTPGLFDFSAGSEFVGK 91 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~------~~~~~~liDtPG~~~~~~~~~~~~~ 91 (221)
.+++.+|.+|+||||++-..+...+...-.++.++........+.. + ....+.+|||+|...
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQER---------- 79 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQER---------- 79 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHH----------
Confidence 4567889999999999988776654222122222222221111111 0 113578999999543
Q ss_pred HHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCc
Q 027618 92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPK 167 (221)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~ 167 (221)
++......++.+-++++++|.+...+... +.|+.+|+-..- .-.+-++++.||+|+.... .....+...+..-+
T Consensus 80 -FRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAY-cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglP 157 (219)
T KOG0081|consen 80 -FRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAY-CENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLP 157 (219)
T ss_pred -HHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhc-cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCC
Confidence 33444445566679999999986666555 788888876422 1233599999999976421 22334444445556
Q ss_pred hhhhhHHHHHhHHHHHHhcCCCCHHHHHHHHHHHHhcHHH
Q 027618 168 PLKKGATKLRDQQFEVDSLKGYSKREISELKEQMHKSYED 207 (221)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (221)
++..++....++.+.++- .+..+.+++++..+.
T Consensus 158 YfETSA~tg~Nv~kave~-------LldlvM~Rie~~v~~ 190 (219)
T KOG0081|consen 158 YFETSACTGTNVEKAVEL-------LLDLVMKRIEQCVEK 190 (219)
T ss_pred eeeeccccCcCHHHHHHH-------HHHHHHHHHHHHHhh
Confidence 677777777777777765 666666666655543
No 269
>PRK12740 elongation factor G; Reviewed
Probab=99.20 E-value=1.7e-10 Score=102.20 Aligned_cols=111 Identities=23% Similarity=0.297 Sum_probs=76.9
Q ss_pred EcCCCCCHHHHHHHHhCCcccccc----------------cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchH
Q 027618 25 VGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF 88 (221)
Q Consensus 25 ~G~~g~GKSslin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~ 88 (221)
+|+.++|||||+++|+........ ....+.|.........| .+..+.+|||||..++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~------ 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDF------ 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHH------
Confidence 599999999999999554321110 01235566666667777 8889999999998642
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
..+. ..++..+|++++|+|+...........+..+... ..|+++|+||+|....
T Consensus 74 -~~~~----~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 74 -TGEV----ERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY-----GVPRIIFVNKMDRAGA 127 (668)
T ss_pred -HHHH----HHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 1222 2334566999999999877777776666655442 2378999999998753
No 270
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.19 E-value=4.1e-10 Score=94.86 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=78.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccc-----------------------------cccCCCCcceeeEEEEEEee
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMQRTVLK 66 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~ 66 (221)
..+...|+++|+.++|||||+-+|+...... ......+.|.........+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~- 82 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET- 82 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-
Confidence 3455889999999999999998876422100 0112345666666666666
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC-CC------HHHHHHHHHHHHHhccccccc
Q 027618 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FS------QEEEAALHSLQTLFGKKIFDY 139 (221)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~------~~~~~~~~~l~~~~~~~~~~~ 139 (221)
.+..+.++||||+.+ +...+...+..+|++++|+|+.+. +. .+.++.+..+.. .|. ++
T Consensus 83 ~~~~i~liDtPGh~d-----------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~gi---~~ 147 (447)
T PLN00043 83 TKYYCTVIDAPGHRD-----------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LGV---KQ 147 (447)
T ss_pred CCEEEEEEECCCHHH-----------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cCC---Cc
Confidence 778999999999643 233344455778999999999854 22 233333333322 233 35
Q ss_pred EEEEEecCCCC
Q 027618 140 MIVVFTGGDEL 150 (221)
Q Consensus 140 ~ivv~tk~D~~ 150 (221)
+++++||+|+.
T Consensus 148 iIV~vNKmD~~ 158 (447)
T PLN00043 148 MICCCNKMDAT 158 (447)
T ss_pred EEEEEEcccCC
Confidence 89999999975
No 271
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=99.19 E-value=2.9e-10 Score=105.93 Aligned_cols=131 Identities=17% Similarity=0.224 Sum_probs=88.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccc------CCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC----CchHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRA------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA----GSEFV 89 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~----~~~~~ 89 (221)
+=++++|++|+||||+|+.- |...+.... ...+.|.. +.|+.....+++||+|.+-... .....
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-----c~wwf~~~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-----CDWWFTDEAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-----cceEecCCEEEEcCCCccccCCCcccccHHH
Confidence 45789999999999999774 665443221 11122332 3355778889999999775432 22345
Q ss_pred HHHHHHHHHhh--cCCCcEEEEEEeCCCCCC--HH--------HHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhH
Q 027618 90 GKEIVKCIGMA--KDGIHAVLVVFSVRSRFS--QE--------EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL 157 (221)
Q Consensus 90 ~~~~~~~~~~~--~~~~~~il~v~~~~~~~~--~~--------~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~ 157 (221)
+..+.+.++.. .+.+++||+++++.+-+. .. -+..++.+.+.+|..+ |++||+||+|++.. +
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~--PVYvv~Tk~Dll~G----F 259 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARF--PVYLVLTKADLLAG----F 259 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEEecchhhcC----H
Confidence 77777776655 356799999999874432 21 1556666777777665 99999999999973 4
Q ss_pred HHHhc
Q 027618 158 EDYLG 162 (221)
Q Consensus 158 ~~~l~ 162 (221)
.+|++
T Consensus 260 ~~~f~ 264 (1169)
T TIGR03348 260 EEFFA 264 (1169)
T ss_pred HHHHH
Confidence 44444
No 272
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.17 E-value=1.1e-10 Score=86.37 Aligned_cols=116 Identities=18% Similarity=0.099 Sum_probs=80.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe--eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
..++++||..++|||+++-..+-..++ ....+.-.. .....+.. .....+.+|||.|..+.+. ++
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp-~~yvPTVFd--nys~~v~V~dg~~v~L~LwDTAGqedYDr--------lR-- 70 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFP-EEYVPTVFD--NYSANVTVDDGKPVELGLWDTAGQEDYDR--------LR-- 70 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCc-ccccCeEEc--cceEEEEecCCCEEEEeeeecCCCccccc--------cc--
Confidence 478999999999999999777655443 322222111 11112222 1344678999999876531 11
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+++.+|++|+++++.++.+... .+|+..++..++. .|+++|+||.|+..
T Consensus 71 -plsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr~ 123 (198)
T KOG0393|consen 71 -PLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLRD 123 (198)
T ss_pred -ccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhhh
Confidence 358899999999999987777665 7888888877533 38999999999874
No 273
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.15 E-value=2.5e-11 Score=87.57 Aligned_cols=62 Identities=35% Similarity=0.466 Sum_probs=37.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccc-cC---CCC--cceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR-AS---SSG--VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~-~~---~~~--~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (221)
..+++|+|++|||||||+|+|++......+ .+ ..+ +|+...... + .....+|||||+.++..
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~--l--~~g~~iIDTPGf~~~~l 102 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFP--L--PDGGYIIDTPGFRSFGL 102 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEE--E--TTSEEEECSHHHHT--G
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEe--c--CCCcEEEECCCCCcccc
Confidence 378999999999999999999998543332 11 112 233333222 2 34578999999987543
No 274
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.15 E-value=1.3e-10 Score=84.60 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=41.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (221)
...+|+++|.+|+|||||+|+|++......+. ..+.|+...... .+..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQYIT----LMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEEEE----cCCCEEEEECcCC
Confidence 35789999999999999999999987654443 334455443222 3455899999995
No 275
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.15 E-value=9.3e-10 Score=92.66 Aligned_cols=121 Identities=12% Similarity=0.182 Sum_probs=75.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc-cCCCCcceeeEEEEE---------------Eee-------------
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQRT---------------VLK------------- 66 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-~~~~~~t~~~~~~~~---------------~~~------------- 66 (221)
..+..+|+++|+-..|||||+.+|+|.....-. ....+.|........ .++
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 355689999999999999999999987542111 111222222111100 000
Q ss_pred ----CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccccEE
Q 027618 67 ----DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FSQEEEAALHSLQTLFGKKIFDYMI 141 (221)
Q Consensus 67 ----~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~i 141 (221)
....+.++||||+. .+.+.+...+..+|++++|+++.+. ...+..+.+..+ +.++. ++++
T Consensus 111 ~~~~~~~~i~~IDtPGH~-----------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~lgi---~~iI 175 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHD-----------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIMKL---KHII 175 (460)
T ss_pred ccccccceEeeeeCCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHcCC---CcEE
Confidence 12478999999953 2333333445677999999999864 455555555433 33453 3689
Q ss_pred EEEecCCCCC
Q 027618 142 VVFTGGDELE 151 (221)
Q Consensus 142 vv~tk~D~~~ 151 (221)
+++||+|+..
T Consensus 176 VvlNKiDlv~ 185 (460)
T PTZ00327 176 ILQNKIDLVK 185 (460)
T ss_pred EEEecccccC
Confidence 9999999875
No 276
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=2.6e-10 Score=90.83 Aligned_cols=130 Identities=16% Similarity=0.248 Sum_probs=86.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEE------------------EEe-------------
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR------------------TVL------------- 65 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~------------------~~~------------- 65 (221)
...+-|+++|+.+.||||+|+.|+...++.....+.++|....... ..+
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 4568899999999999999999999987633322222222211111 000
Q ss_pred --------eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccc
Q 027618 66 --------KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKI 136 (221)
Q Consensus 66 --------~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~ 136 (221)
+--..+.+|||||+.+.....-+..-.+...+.+....+|.|++++|+. -..+++..+.+..|+.. ..
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~--Ed- 212 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH--ED- 212 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC--cc-
Confidence 0012489999999987544333344456666777788899999999987 12455557777776642 22
Q ss_pred cccEEEEEecCCCCC
Q 027618 137 FDYMIVVFTGGDELE 151 (221)
Q Consensus 137 ~~~~ivv~tk~D~~~ 151 (221)
.+-||+||+|+.+
T Consensus 213 --kiRVVLNKADqVd 225 (532)
T KOG1954|consen 213 --KIRVVLNKADQVD 225 (532)
T ss_pred --eeEEEeccccccC
Confidence 5889999999987
No 277
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.13 E-value=6.2e-10 Score=92.23 Aligned_cols=89 Identities=19% Similarity=0.097 Sum_probs=58.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe--------------------e---CCceEEEEeC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--------------------K---DGQVVNVIDT 76 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--------------------~---~~~~~~liDt 76 (221)
.+|+++|.+++|||||+|+|++...... .....|..+....... . ....+.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~--~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIA--NYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccc--CCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 5799999999999999999998865322 2234444444433221 0 1245789999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCC
Q 027618 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (221)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (221)
||+.........+...+... ++.+|++++|+++.
T Consensus 80 aGl~~ga~~g~glg~~fL~~----ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDD----LRQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHHHH----HHHCCEEEEEEeCC
Confidence 99975333233344444444 44559999999985
No 278
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.12 E-value=7.1e-10 Score=89.26 Aligned_cols=87 Identities=20% Similarity=0.131 Sum_probs=55.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-----------------------eCCceEEEEeCCC
Q 027618 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-----------------------KDGQVVNVIDTPG 78 (221)
Q Consensus 22 i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----------------------~~~~~~~liDtPG 78 (221)
|+++|.+++|||||+|+|++...... .....|..+......+ .....+.++||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~--~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIA--NYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCccc--CCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 58999999999999999998764222 1223444444332221 0234689999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCC
Q 027618 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (221)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (221)
+.........+...+... ++.+|++++|+++.
T Consensus 79 lv~ga~~~~glg~~fL~~----ir~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHEGKGLGNKFLDD----LRDADALIHVVDAS 110 (318)
T ss_pred CCCCccchhhHHHHHHHH----HHHCCEEEEEEeCC
Confidence 965322222233344433 45569999999986
No 279
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.11 E-value=2e-10 Score=82.49 Aligned_cols=119 Identities=21% Similarity=0.150 Sum_probs=77.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.-.+++++|..++||||+|.+.|...+-.......+.........+.. ...+..+|||.|..++ ....
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~-Edvr~mlWdtagqeEf-----------DaIt 86 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLI-EDVRSMLWDTAGQEEF-----------DAIT 86 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhH-HHHHHHHHHhccchhH-----------HHHH
Confidence 347889999999999999999995433111111111111000011111 3345778999996543 1333
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+++++.+.++|++-.++.+.+. ..|-+.+..-.+. .|.++|-||+|+++
T Consensus 87 kAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~---IPtV~vqNKIDlve 138 (246)
T KOG4252|consen 87 KAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETER---IPTVFVQNKIDLVE 138 (246)
T ss_pred HHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhcc---CCeEEeeccchhhH
Confidence 456889999999999988887766 5566666554443 38999999999886
No 280
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.11 E-value=1.4e-10 Score=78.45 Aligned_cols=115 Identities=20% Similarity=0.227 Sum_probs=73.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
++++++|+.|+|||||.++|-|....... | ..++| ++. ..|||||-+-. .+...+++..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK------T-----QAve~-~d~--~~IDTPGEy~~-------~~~~Y~aL~t 60 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK------T-----QAVEF-NDK--GDIDTPGEYFE-------HPRWYHALIT 60 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcc------c-----ceeec-cCc--cccCCchhhhh-------hhHHHHHHHH
Confidence 58999999999999999999987643221 1 12333 332 16999997621 2233344445
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC-CChhhHHHHhcc
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE-DNDETLEDYLGR 163 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~-~~~~~~~~~l~~ 163 (221)
....++++++|-.++++-+...- .|-....+|+|-|+||.|+.+ .+-.....+|.+
T Consensus 61 t~~dadvi~~v~~and~~s~f~p--------~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~e 117 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFPP--------GFLDIGVKKVIGVVTKADLAEDADISLVKRWLRE 117 (148)
T ss_pred HhhccceeeeeecccCccccCCc--------ccccccccceEEEEecccccchHhHHHHHHHHHH
Confidence 55677999999998865332221 122223346999999999984 233455667765
No 281
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.11 E-value=6.4e-09 Score=80.01 Aligned_cols=95 Identities=18% Similarity=0.098 Sum_probs=59.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCc-ccccccCCCCcceeeEEEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
.+...|+++|++++|||+|+|.|+|.. .+..+.....+|.........+. .+..++++||||+.+...........+
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 445789999999999999999999982 34343333455554444444331 257899999999998655430111111
Q ss_pred HHHHHhhcCCCcEEEEEEeCC
Q 027618 94 VKCIGMAKDGIHAVLVVFSVR 114 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~ 114 (221)
. ++... -+++++|.....
T Consensus 85 ~-~l~~l--lss~~i~n~~~~ 102 (224)
T cd01851 85 F-ALATL--LSSVLIYNSWET 102 (224)
T ss_pred H-HHHHH--HhCEEEEeccCc
Confidence 1 11111 237788777665
No 282
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.1e-09 Score=93.28 Aligned_cols=129 Identities=21% Similarity=0.245 Sum_probs=87.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC-----------------------------------------ccee
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-----------------------------------------VTST 57 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~-----------------------------------------~t~~ 57 (221)
.-+|++.|.+++||||++|+++..+..+.+..+.. ....
T Consensus 109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~ 188 (749)
T KOG0448|consen 109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGA 188 (749)
T ss_pred ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCc
Confidence 36899999999999999999998887655432210 0011
Q ss_pred eEEEEEEeeCC------ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 027618 58 CEMQRTVLKDG------QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTL 131 (221)
Q Consensus 58 ~~~~~~~~~~~------~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~ 131 (221)
.-...+.|+.+ ..+.++|.||+.-.. +...++..+...+|+++||+++...++..+.+++....+.
T Consensus 189 ~sLlrV~~p~~~csLLrnDivliDsPGld~~s--------e~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~ 260 (749)
T KOG0448|consen 189 GSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS--------ELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE 260 (749)
T ss_pred ceEEEEEecCccchhhhccceeccCCCCCCch--------hhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc
Confidence 11122444333 368999999997422 2334555566778999999999888888888877666553
Q ss_pred hcccccccEEEEEecCCCCCCChhhHHHH
Q 027618 132 FGKKIFDYMIVVFTGGDELEDNDETLEDY 160 (221)
Q Consensus 132 ~~~~~~~~~ivv~tk~D~~~~~~~~~~~~ 160 (221)
+++++|+.||+|.....+.-.+..
T Consensus 261 -----KpniFIlnnkwDasase~ec~e~V 284 (749)
T KOG0448|consen 261 -----KPNIFILNNKWDASASEPECKEDV 284 (749)
T ss_pred -----CCcEEEEechhhhhcccHHHHHHH
Confidence 457999999999876433333333
No 283
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.07 E-value=2e-09 Score=82.83 Aligned_cols=126 Identities=15% Similarity=0.135 Sum_probs=80.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccC-CCCcceeeEEEEEEeeCCceEEEEeCCCCCCCC---CCchHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS-SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS---AGSEFVGK 91 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~---~~~~~~~~ 91 (221)
.+...+++++|.+++|||||+|.++.......... ..+.|...+.+. -+..++++|.||+.... ....++..
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~----v~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH----VGKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee----ccceEEEEecCCcccccCCccCcchHhH
Confidence 45568999999999999999999998775333222 445555444333 57789999999954221 11222333
Q ss_pred HHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....++......+.+ +++++++-.+.+-|...++++-+. ..|+.+|+||||+..
T Consensus 209 ~t~~Y~leR~nLv~~-FLLvd~sv~i~~~D~~~i~~~ge~-----~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 209 FTKSYLLERENLVRV-FLLVDASVPIQPTDNPEIAWLGEN-----NVPMTSVFTKCDKQK 262 (320)
T ss_pred hHHHHHHhhhhhhee-eeeeeccCCCCCCChHHHHHHhhc-----CCCeEEeeehhhhhh
Confidence 333343333233444 444555547777777777777653 237999999999875
No 284
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=4.4e-09 Score=85.26 Aligned_cols=131 Identities=21% Similarity=0.249 Sum_probs=86.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc-----------------------------ccCCCCcceeeEEEEEEee
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLK 66 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~ 66 (221)
..+...++++|+..+|||||+-.|+-...... .....+.|........+.
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet- 82 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET- 82 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-
Confidence 35568999999999999999988765432110 011236666666666665
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC-------CCHHHHHHHHHHHHHhccccccc
Q 027618 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDY 139 (221)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~ 139 (221)
....++++|+||.-+ +.+-+...+.++|+.++|++++.. ...+.++-+ .|...+|-. .
T Consensus 83 ~k~~~tIiDaPGHrd-----------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi~---~ 147 (428)
T COG5256 83 DKYNFTIIDAPGHRD-----------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGIK---Q 147 (428)
T ss_pred CCceEEEeeCCchHH-----------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhcCCc---e
Confidence 666899999999543 222233345677999999999855 333344333 444555644 6
Q ss_pred EEEEEecCCCCCCChhhHHHHhc
Q 027618 140 MIVVFTGGDELEDNDETLEDYLG 162 (221)
Q Consensus 140 ~ivv~tk~D~~~~~~~~~~~~l~ 162 (221)
.+|++||+|...=+...+++..+
T Consensus 148 lIVavNKMD~v~wde~rf~ei~~ 170 (428)
T COG5256 148 LIVAVNKMDLVSWDEERFEEIVS 170 (428)
T ss_pred EEEEEEcccccccCHHHHHHHHH
Confidence 99999999987544555555444
No 285
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.05 E-value=1.5e-09 Score=75.12 Aligned_cols=122 Identities=16% Similarity=0.115 Sum_probs=83.5
Q ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHH
Q 027618 12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGK 91 (221)
Q Consensus 12 ~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~ 91 (221)
..+++.+..+|+++|--++||||+++.|.+..... ..+|.-.....+.+....++.+||.-|.-
T Consensus 10 ~ks~t~rEirilllGldnAGKTT~LKqL~sED~~h-----ltpT~GFn~k~v~~~g~f~LnvwDiGGqr----------- 73 (185)
T KOG0074|consen 10 CKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRH-----LTPTNGFNTKKVEYDGTFHLNVWDIGGQR----------- 73 (185)
T ss_pred hcCCCcceEEEEEEecCCCcchhHHHHHccCChhh-----ccccCCcceEEEeecCcEEEEEEecCCcc-----------
Confidence 35677888999999999999999999998876522 22333344445555345789999988743
Q ss_pred HHHHHHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.++-++..++..+|.+|||+|..+.-..++ ....+.+.+. +-...|+.+..||-|++.
T Consensus 74 ~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleee--Kl~~vpvlIfankQdllt 133 (185)
T KOG0074|consen 74 GIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEE--KLAEVPVLIFANKQDLLT 133 (185)
T ss_pred ccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhh--hhhccceeehhhhhHHHh
Confidence 344667788889999999999765433332 2333333221 223447888889999876
No 286
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=3.7e-09 Score=73.10 Aligned_cols=151 Identities=14% Similarity=0.126 Sum_probs=94.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
...++.+++|.-|+|||.|+..++..++...-+.+.+.........+.. ...++.+|||.|.. +++..
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsg-qkiklqiwdtagqe-----------rfrav 76 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG-QKIKLQIWDTAGQE-----------RFRAV 76 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecC-cEEEEEEeecccHH-----------HHHHH
Confidence 3457889999999999999999887765433333333333333333333 45678999999943 45566
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhhhh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKKG 172 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~~ 172 (221)
.+..++++.+.+.|+|+..+-+-.. ..|+...+.+-. ....++++.||.|+-.... +...+|..++.-.+|..+
T Consensus 77 trsyyrgaagalmvyditrrstynhlsswl~dar~ltn--pnt~i~lignkadle~qrdv~yeeak~faeengl~fle~s 154 (215)
T KOG0097|consen 77 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEAS 154 (215)
T ss_pred HHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCC--CceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEec
Confidence 6778899999999999985554433 445444444321 1224788999999754322 334456554444445555
Q ss_pred HHHHHhHHH
Q 027618 173 ATKLRDQQF 181 (221)
Q Consensus 173 ~~~~~~~~~ 181 (221)
++..++..+
T Consensus 155 aktg~nved 163 (215)
T KOG0097|consen 155 AKTGQNVED 163 (215)
T ss_pred ccccCcHHH
Confidence 555544443
No 287
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=2.2e-09 Score=98.04 Aligned_cols=132 Identities=17% Similarity=0.232 Sum_probs=83.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-----CcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCc----hHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-----GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS----EFVG 90 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~----~~~~ 90 (221)
+=.+++|++|+||||++.. .|..++....... ..|..|. |......++|||.|-+-...+. ...+
T Consensus 126 PWy~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cd-----wwf~deaVlIDtaGry~~q~s~~~~~~~~W 199 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCD-----WWFTDEAVLIDTAGRYITQDSADEVDRAEW 199 (1188)
T ss_pred CceEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccC-----cccccceEEEcCCcceecccCcchhhHHHH
Confidence 3468999999999998844 3554443321111 1134343 5588899999999988655322 2245
Q ss_pred HHHHHHHHhh--cCCCcEEEEEEeCCCCCCHHH----------HHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHH
Q 027618 91 KEIVKCIGMA--KDGIHAVLVVFSVRSRFSQEE----------EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLE 158 (221)
Q Consensus 91 ~~~~~~~~~~--~~~~~~il~v~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~ 158 (221)
..+...++.. .+..++|++.+++.+-.+... +..++.|.+.++.. .|+++++||.|++. + ++
T Consensus 200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~--~PVYl~lTk~Dll~--G--F~ 273 (1188)
T COG3523 200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHAR--LPVYLVLTKADLLP--G--FE 273 (1188)
T ss_pred HHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccC--CceEEEEecccccc--c--HH
Confidence 5555555433 356799999999875433322 23355555555544 49999999999997 3 55
Q ss_pred HHhcc
Q 027618 159 DYLGR 163 (221)
Q Consensus 159 ~~l~~ 163 (221)
+|+..
T Consensus 274 efF~~ 278 (1188)
T COG3523 274 EFFGS 278 (1188)
T ss_pred HHHhc
Confidence 66653
No 288
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.04 E-value=6.5e-10 Score=81.90 Aligned_cols=57 Identities=33% Similarity=0.401 Sum_probs=42.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (221)
...+++++|.+++|||||+|+|++......+. ..+.|...+... .+..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~-~pg~T~~~~~~~----~~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGA-TPGVTKSMQEVH----LDKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecC-CCCeEcceEEEE----eCCCEEEEECcCC
Confidence 34799999999999999999999987654543 345555544333 2346889999995
No 289
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=1.6e-08 Score=69.95 Aligned_cols=127 Identities=16% Similarity=0.163 Sum_probs=86.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
..+.+|+.+|-.++||||++..|+-... ....+|.-..+..+.+ .+..+.++|.-|.. .++..
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-----~~~ipTvGFnvetVty-kN~kfNvwdvGGqd-----------~iRpl 77 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETVTY-KNVKFNVWDVGGQD-----------KIRPL 77 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-----cccccccceeEEEEEe-eeeEEeeeeccCch-----------hhhHH
Confidence 3468999999999999999988764321 1223455566677777 88899999988843 45677
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCC-hhhHHHHhc
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELEDN-DETLEDYLG 162 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~~-~~~~~~~l~ 162 (221)
++.++++..++|||+|..++-.-+ +.-+.|....+.+ ...++.|..||-|+.... ++.+.+|+.
T Consensus 78 WrhYy~gtqglIFV~Dsa~~dr~e--eAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~le 144 (180)
T KOG0071|consen 78 WRHYYTGTQGLIFVVDSADRDRIE--EARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLE 144 (180)
T ss_pred HHhhccCCceEEEEEeccchhhHH--HHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhc
Confidence 778899999999999987552222 2222333333322 122678889999986532 567778776
No 290
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.01 E-value=1.1e-09 Score=78.20 Aligned_cols=57 Identities=28% Similarity=0.469 Sum_probs=40.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~ 80 (221)
..+++++|.+|+||||++|+|++....... ...+.|..... +.. +..+.++||||+.
T Consensus 83 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~--~~~--~~~~~i~DtpG~~ 139 (141)
T cd01857 83 NATIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQT--IFL--TPTITLCDCPGLV 139 (141)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEE--EEe--CCCEEEEECCCcC
Confidence 348999999999999999999998765332 23344444433 322 2368999999985
No 291
>PRK13768 GTPase; Provisional
Probab=99.01 E-value=2.9e-09 Score=83.36 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=50.1
Q ss_pred eEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCC
Q 027618 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (221)
Q Consensus 70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~ 149 (221)
.+.++||||..+.... ......+.+.+.... ++++++|+|+....+..+.....++....-.....|+++|+||+|.
T Consensus 98 ~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 98 DYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL 174 (253)
T ss_pred CEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence 6899999997653221 223444444443321 7899999999866666665444444321111224589999999999
Q ss_pred CC
Q 027618 150 LE 151 (221)
Q Consensus 150 ~~ 151 (221)
..
T Consensus 175 ~~ 176 (253)
T PRK13768 175 LS 176 (253)
T ss_pred cC
Confidence 86
No 292
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.01 E-value=6.4e-08 Score=80.51 Aligned_cols=123 Identities=16% Similarity=0.193 Sum_probs=70.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHh------CCcccccccCCCC---------cceeeEE--EEEE--e------------
Q 027618 17 NGERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASSSG---------VTSTCEM--QRTV--L------------ 65 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~------~~~~~~~~~~~~~---------~t~~~~~--~~~~--~------------ 65 (221)
.++..|+++|++|+||||++..|. |..+......+.. ....... .... .
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 345789999999999999998886 3332211111000 0000000 1000 0
Q ss_pred --eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 027618 66 --KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV 143 (221)
Q Consensus 66 --~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv 143 (221)
..+..++||||||... .+..+..++...... ..++.+++|+|+..... .....+.+.+. ..+.-+|
T Consensus 178 ~~~~~~DvViIDTaGr~~---~d~~lm~El~~i~~~--~~p~e~lLVlda~~Gq~--a~~~a~~F~~~-----~~~~g~I 245 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHK---QEDSLFEEMLQVAEA--IQPDNIIFVMDGSIGQA--AEAQAKAFKDS-----VDVGSVI 245 (429)
T ss_pred HHhCCCCEEEEECCCCCc---chHHHHHHHHHHhhh--cCCcEEEEEeccccChh--HHHHHHHHHhc-----cCCcEEE
Confidence 0245789999999763 234566666666432 35688999999863322 23333444432 2357799
Q ss_pred EecCCCCC
Q 027618 144 FTGGDELE 151 (221)
Q Consensus 144 ~tk~D~~~ 151 (221)
+||.|...
T Consensus 246 lTKlD~~a 253 (429)
T TIGR01425 246 ITKLDGHA 253 (429)
T ss_pred EECccCCC
Confidence 99999754
No 293
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.97 E-value=4.2e-09 Score=84.08 Aligned_cols=66 Identities=23% Similarity=0.345 Sum_probs=47.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCch
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE 87 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~ 87 (221)
....+++++|.+++||||++|+|++......+. ..+.|...+... -+..+.++||||+..+....+
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~l~DtPGi~~~~~~~~ 184 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQWIK----LGKGLELLDTPGILWPKLEDQ 184 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEEEE----eCCcEEEEECCCcCCCCCCcH
Confidence 345789999999999999999999987644432 445566554322 245688999999987654433
No 294
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.97 E-value=1.4e-08 Score=71.27 Aligned_cols=120 Identities=18% Similarity=0.135 Sum_probs=74.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHH-hCCcccccccCCCCcceeeEEEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSI-LGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l-~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
+...+|+++|--++|||+++..| +|...+.... .++........++.+. ...+.+.||.|+.+.. . ++
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~--~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~---~----eL 77 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTEL--HPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQ---Q----EL 77 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCcc--ccchhhheeEeeecCCChhheEEEeecccccCch---h----hh
Confidence 34578999999999999999665 5554432221 2222223333343323 2468899999998631 1 11
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhc---ccccccEEEEEecCCCCC
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG---KKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~ivv~tk~D~~~ 151 (221)
-+ .++.-+|++++|++..+. +..+.++.|++... .....|++|+.|+.|+..
T Consensus 78 pr---hy~q~aDafVLVYs~~d~---eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~ 132 (198)
T KOG3883|consen 78 PR---HYFQFADAFVLVYSPMDP---ESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE 132 (198)
T ss_pred hH---hHhccCceEEEEecCCCH---HHHHHHHHHHHHHhhccccccccEEEEechhhccc
Confidence 11 344556999999987643 33444444444333 234458999999999875
No 295
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.97 E-value=1.1e-09 Score=86.08 Aligned_cols=63 Identities=29% Similarity=0.344 Sum_probs=40.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccc----cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (221)
+.+.+|+|++|+|||||+|+|.+......+ ....|..++.....+.+ .....++||||+.++.
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l--~~gG~iiDTPGf~~~~ 230 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPL--PGGGWIIDTPGFRSLG 230 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEc--CCCCEEEeCCCCCccC
Confidence 468899999999999999999986543322 11122222222222322 2456799999998653
No 296
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.95 E-value=1.5e-09 Score=81.44 Aligned_cols=57 Identities=30% Similarity=0.335 Sum_probs=39.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccc-------cccCCCCcceeeEEEEEEeeCCceEEEEeCCCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFK-------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (221)
+.+++++|.+|+|||||||+|++..... ......++|........ +..+.++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence 3689999999999999999999865422 11223345555544333 235799999996
No 297
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.94 E-value=2.8e-09 Score=77.39 Aligned_cols=58 Identities=26% Similarity=0.401 Sum_probs=41.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (221)
....+++++|.+|+||||++|+|++......+. ..+.|....... .+..+.++||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~-~~~~t~~~~~~~----~~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGN-VPGTTTSQQEVK----LDNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccC-CCCcccceEEEE----ecCCEEEEECCCC
Confidence 345889999999999999999999977543332 234444444322 2356899999996
No 298
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=1.3e-08 Score=83.01 Aligned_cols=121 Identities=16% Similarity=0.232 Sum_probs=86.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHh--CCcccccc------------------cCCCCcceeeEEEEEEeeCCceEEEEeC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSIL--GRRAFKSR------------------ASSSGVTSTCEMQRTVLKDGQVVNVIDT 76 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~--~~~~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~liDt 76 (221)
...++.+++-++.+|||||-..|+ |......+ ....++...+.+-..+| .+..+.++||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDT 88 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDT 88 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCC
Confidence 456899999999999999986653 22221111 01125555666666777 8999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCh
Q 027618 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND 154 (221)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 154 (221)
||+.||+.+.- ..+..+|+.+.|+|+-.++.++..+.++..+-. + .|++-.+||+|+-..++
T Consensus 89 PGHeDFSEDTY-----------RtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR-~----iPI~TFiNKlDR~~rdP 150 (528)
T COG4108 89 PGHEDFSEDTY-----------RTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLR-D----IPIFTFINKLDREGRDP 150 (528)
T ss_pred CCccccchhHH-----------HHHHhhheeeEEEecccCccHHHHHHHHHHhhc-C----CceEEEeeccccccCCh
Confidence 99999875433 344566999999999878988887776654432 2 27999999999876444
No 299
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.92 E-value=3.6e-09 Score=79.60 Aligned_cols=75 Identities=21% Similarity=0.139 Sum_probs=46.0
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 027618 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (221)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D 148 (221)
..+++|||||... .+.....++.+.+... .++-+++|++++... .+...+....+.++ .--+++||.|
T Consensus 84 ~D~vlIDT~Gr~~---~d~~~~~el~~~~~~~--~~~~~~LVlsa~~~~--~~~~~~~~~~~~~~-----~~~lIlTKlD 151 (196)
T PF00448_consen 84 YDLVLIDTAGRSP---RDEELLEELKKLLEAL--NPDEVHLVLSATMGQ--EDLEQALAFYEAFG-----IDGLILTKLD 151 (196)
T ss_dssp SSEEEEEE-SSSS---THHHHHHHHHHHHHHH--SSSEEEEEEEGGGGG--HHHHHHHHHHHHSS-----TCEEEEESTT
T ss_pred CCEEEEecCCcch---hhHHHHHHHHHHhhhc--CCccceEEEecccCh--HHHHHHHHHhhccc-----CceEEEEeec
Confidence 5689999999874 2344566666655444 567899999987433 22223333333332 3458899999
Q ss_pred CCCCChh
Q 027618 149 ELEDNDE 155 (221)
Q Consensus 149 ~~~~~~~ 155 (221)
....-+.
T Consensus 152 et~~~G~ 158 (196)
T PF00448_consen 152 ETARLGA 158 (196)
T ss_dssp SSSTTHH
T ss_pred CCCCccc
Confidence 8764333
No 300
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=6.1e-09 Score=88.64 Aligned_cols=121 Identities=22% Similarity=0.243 Sum_probs=82.7
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccC---------------CCCcceeeEEEEEEe----eCCceEEEE
Q 027618 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS---------------SSGVTSTCEMQRTVL----KDGQVVNVI 74 (221)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~---------------~~~~t~~~~~~~~~~----~~~~~~~li 74 (221)
..+...+.|+++|+-++|||+|+..|.+..-+..... ..+.+......++.. .....+.++
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 3455668999999999999999999987764322100 112222222222211 134468899
Q ss_pred eCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618 75 DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (221)
Q Consensus 75 DtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (221)
||||+-+|.. +.. ..++.+|++++|+|+.+.......+.+++.-+. ..|+++|+||+|++
T Consensus 203 DTPGHVnF~D-------E~t----a~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~-----~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 203 DTPGHVNFSD-------ETT----ASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQN-----RLPIVVVINKVDRL 262 (971)
T ss_pred cCCCcccchH-------HHH----HHhhhcceEEEEEEcccCceeeHHHHHHHHHhc-----cCcEEEEEehhHHH
Confidence 9999988642 222 344566999999999989998888888776553 23799999999986
No 301
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.91 E-value=9.1e-09 Score=81.71 Aligned_cols=63 Identities=25% Similarity=0.318 Sum_probs=45.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (221)
....+++++|.+|+|||||+|+|++......+. ..+.|...+... -+..+.++||||+..+..
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~l~DtPG~~~~~~ 178 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQWIK----LSDGLELLDTPGILWPKF 178 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEEEE----eCCCEEEEECCCcccCCC
Confidence 345789999999999999999999887554442 345555554322 234689999999965443
No 302
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.91 E-value=5.9e-10 Score=76.28 Aligned_cols=115 Identities=13% Similarity=0.142 Sum_probs=75.7
Q ss_pred EEEcCCCCCHHHHHHHHhCCcccccc-cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhc
Q 027618 23 VLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK 101 (221)
Q Consensus 23 ~l~G~~g~GKSslin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (221)
+++|.+++|||.|+-..-...+.... .++.++..........- ...++.+|||.|... +++.....+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~-~kvklqiwdtagqer-----------frsvt~ayy 68 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDD-KKVKLQIWDTAGQER-----------FRSVTHAYY 68 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCC-cEEEEEEeeccchHH-----------HhhhhHhhh
Confidence 47899999999986443222211111 12222222223333322 455789999999654 445555678
Q ss_pred CCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 102 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 102 ~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+.+|++++++|+.++.+... +.|+..+.+.-...+ .++++.||+|...
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~v--~l~llgnk~d~a~ 117 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAV--ALMLLGNKCDLAH 117 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhH--hHhhhccccccch
Confidence 88999999999987888777 788889988733332 5889999999864
No 303
>PRK12288 GTPase RsgA; Reviewed
Probab=98.90 E-value=3.1e-09 Score=86.56 Aligned_cols=60 Identities=28% Similarity=0.441 Sum_probs=39.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCC----CC--cceeeEEEEEEeeCCceEEEEeCCCCCCCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SG--VTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~----~~--~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (221)
..++|+|.+|+|||||||+|++.....++... .| +|+....+... . ...++||||+-++.
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~--~--~~~liDTPGir~~~ 271 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP--H--GGDLIDSPGVREFG 271 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec--C--CCEEEECCCCCccc
Confidence 35799999999999999999998765443211 11 23333333331 2 24599999998754
No 304
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=9.9e-09 Score=74.41 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=81.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
.....+|+++|--+|||||++..+--.... ...+|.-..+..+.+ .+..+.+||.-|... ++.
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~v-----ttvPTiGfnVE~v~y-kn~~f~vWDvGGq~k-----------~R~ 76 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIV-----TTVPTIGFNVETVEY-KNISFTVWDVGGQEK-----------LRP 76 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcc-----cCCCccccceeEEEE-cceEEEEEecCCCcc-----------ccc
Confidence 455689999999999999999776433332 224577777788888 899999999988643 223
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCC
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~ 151 (221)
.+..+++..+++|||+|.+++....+ .-+.|...+... ...|+++..||.|...
T Consensus 77 lW~~Y~~~t~~lIfVvDS~Dr~Ri~e--ak~eL~~~l~~~~l~~~~llv~aNKqD~~~ 132 (181)
T KOG0070|consen 77 LWKHYFQNTQGLIFVVDSSDRERIEE--AKEELHRMLAEPELRNAPLLVFANKQDLPG 132 (181)
T ss_pred chhhhccCCcEEEEEEeCCcHHHHHH--HHHHHHHHHcCcccCCceEEEEechhhccc
Confidence 45567788899999999987655444 222222222211 3448999999999765
No 305
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.90 E-value=7.6e-09 Score=81.33 Aligned_cols=127 Identities=17% Similarity=0.130 Sum_probs=84.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
..|+++|.++|||||||++|++....... .-..|..+.......+.++.+.+.||-||... -+-.+..-+...+ .
T Consensus 179 pviavVGYTNaGKsTLikaLT~Aal~p~d--rLFATLDpT~h~a~Lpsg~~vlltDTvGFisd--LP~~LvaAF~ATL-e 253 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKAALYPND--RLFATLDPTLHSAHLPSGNFVLLTDTVGFISD--LPIQLVAAFQATL-E 253 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhhhcCccc--hhheeccchhhhccCCCCcEEEEeechhhhhh--CcHHHHHHHHHHH-H
Confidence 78999999999999999999977664443 23345555555566668899999999999752 2222222222222 2
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccc---ccccEEEEEecCCCCC
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK---IFDYMIVVFTGGDELE 151 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~ivv~tk~D~~~ 151 (221)
....+|.++-|.|++.+.-.+.+..+....+..|.+ ....++=|=||.|.-.
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence 235679999999999666555544444443334642 3345677788888654
No 306
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.89 E-value=6.2e-09 Score=76.81 Aligned_cols=58 Identities=26% Similarity=0.398 Sum_probs=41.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~ 80 (221)
...+++++|.+|+|||||+|+|++......+ ...+.|........ ...+.++||||+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~~----~~~~~~iDtpG~~ 171 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIKI----SPGIYLLDTPGIL 171 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEEe----cCCEEEEECCCCC
Confidence 4478999999999999999999987754332 23344554444332 2568899999974
No 307
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1.4e-08 Score=75.23 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
..|.++|++++|||+|+-.|...... ..-+...+....+.+ ......+||-||... +...+...++.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~-----~TvtSiepn~a~~r~-gs~~~~LVD~PGH~r-------lR~kl~e~~~~ 105 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR-----GTVTSIEPNEATYRL-GSENVTLVDLPGHSR-------LRRKLLEYLKH 105 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc-----CeeeeeccceeeEee-cCcceEEEeCCCcHH-------HHHHHHHHccc
Confidence 78999999999999998766644321 122233344444444 555689999999753 22333333322
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHh----cccccccEEEEEecCCCCC
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLF----GKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~ivv~tk~D~~~ 151 (221)
. ..+-+++||+|.. .+.+.-+...++|-... +..-..|+.+..||.|+..
T Consensus 106 ~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 106 N-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT 159 (238)
T ss_pred c-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence 1 2567999999876 44444444444443332 2233457999999999875
No 308
>PRK12289 GTPase RsgA; Reviewed
Probab=98.86 E-value=5.3e-09 Score=85.29 Aligned_cols=61 Identities=26% Similarity=0.381 Sum_probs=40.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccC----CCC--cceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS----SSG--VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~----~~~--~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (221)
..++|+|++|+|||||||+|++......+.. ..| +|+...... .+.+ ..|+||||+..+..
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~--l~~g--~~liDTPG~~~~~l 239 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFE--LPNG--GLLADTPGFNQPDL 239 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEE--CCCC--cEEEeCCCcccccc
Confidence 4689999999999999999998765443311 111 333343332 2122 47999999987543
No 309
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.85 E-value=1.6e-08 Score=80.64 Aligned_cols=60 Identities=37% Similarity=0.466 Sum_probs=40.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCC----CC--cceeeEEEEEEeeCCceEEEEeCCCCCCCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SG--VTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~----~~--~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (221)
.+++++|++|+|||||+|+|++......+... .+ +|+.... +.. .....++||||+.++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~--~~~--~~~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHREL--FPL--PGGGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEE--EEc--CCCCEEEECCCCCccC
Confidence 68999999999999999999998765443111 11 2333322 222 2235799999997643
No 310
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.84 E-value=7.1e-09 Score=72.24 Aligned_cols=115 Identities=17% Similarity=0.098 Sum_probs=72.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
...+.++|-..+||||++|.+....+... -.+|.-.....+.- ....+.++|.||...| +..+.
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~ed----miptvGfnmrk~tk-gnvtiklwD~gGq~rf-----------rsmWe 83 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLED----MIPTVGFNMRKVTK-GNVTIKLWDLGGQPRF-----------RSMWE 83 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhh----hcccccceeEEecc-CceEEEEEecCCCccH-----------HHHHH
Confidence 46789999999999999998875443211 12233333333322 4567889999997653 23445
Q ss_pred hhcCCCcEEEEEEeCCCC--CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSR--FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.+.+++++++||+|+.++ .+..-.+....|.+- .-...|+.|+.||.|+..
T Consensus 84 rycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~--~l~gip~LVLGnK~d~~~ 136 (186)
T KOG0075|consen 84 RYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKP--SLTGIPLLVLGNKIDLPG 136 (186)
T ss_pred HHhhcCcEEEEEeecCCcccchhhHHHHHHHhcch--hhcCCcEEEecccccCcc
Confidence 677899999999999753 222222222222221 112348999999999865
No 311
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.84 E-value=5.8e-09 Score=81.30 Aligned_cols=59 Identities=27% Similarity=0.329 Sum_probs=40.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccc-C---C--CCcceeeEEEEEEeeCCceEEEEeCCCCCCCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRA-S---S--SGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~-~---~--~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (221)
..++++|++|+|||||+|+|++......+. + . ..+|+....... . ...++||||+..+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~--~~~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---H--GGLIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---C--CcEEEeCCCccccC
Confidence 588999999999999999999876543321 1 1 113344433332 2 34899999998754
No 312
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=2.1e-08 Score=84.23 Aligned_cols=110 Identities=19% Similarity=0.194 Sum_probs=76.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccC-CCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS-SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
.++..++++||+|+||||||.+|.....-..-.. ..++|... . ..++++++.+|.- ...+.+
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvs------g-K~RRiTflEcp~D----------l~~miD 129 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVS------G-KTRRITFLECPSD----------LHQMID 129 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEee------c-ceeEEEEEeChHH----------HHHHHh
Confidence 4557888999999999999999876543211111 12222211 1 6788999999942 123333
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.. .-+|.+|++++.+..+..+..+++..+... | .+.++-|+||.|+..
T Consensus 130 va----KIaDLVlLlIdgnfGfEMETmEFLnil~~H-G---mPrvlgV~ThlDlfk 177 (1077)
T COG5192 130 VA----KIADLVLLLIDGNFGFEMETMEFLNILISH-G---MPRVLGVVTHLDLFK 177 (1077)
T ss_pred HH----HhhheeEEEeccccCceehHHHHHHHHhhc-C---CCceEEEEeeccccc
Confidence 33 334999999999988988888888777654 4 447999999999887
No 313
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.83 E-value=2.2e-07 Score=77.98 Aligned_cols=143 Identities=17% Similarity=0.160 Sum_probs=92.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCC---------------------------------------------
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS--------------------------------------------- 51 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~--------------------------------------------- 51 (221)
+.-++|+++|.-++||||.+..+.....++.+...
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 44589999999999999999999877665433211
Q ss_pred -------CCcceeeEEEEEE--eeCCceEEEEeCCCCCCC--CCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHH
Q 027618 52 -------SGVTSTCEMQRTV--LKDGQVVNVIDTPGLFDF--SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120 (221)
Q Consensus 52 -------~~~t~~~~~~~~~--~~~~~~~~liDtPG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~ 120 (221)
.|.|......... .++-.+.+++|.||+..+ .++..+....+.+.....+..+++||+|+.-. ....+
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SVDAE 464 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SVDAE 464 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-Ccchh
Confidence 1334444333333 234457899999999763 22233445556666666788899999999766 44444
Q ss_pred HHHHHHHHHHHhcccccccEEEEEecCCCCCC---ChhhHHHHhc
Q 027618 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELED---NDETLEDYLG 162 (221)
Q Consensus 121 ~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~---~~~~~~~~l~ 162 (221)
-...-+.+... .+ .-...|+|+||.|+.+. ++..+...+.
T Consensus 465 RSnVTDLVsq~-DP-~GrRTIfVLTKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 465 RSIVTDLVSQM-DP-HGRRTIFVLTKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred hhhHHHHHHhc-CC-CCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence 33333444433 32 23469999999998753 3566777776
No 314
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=6.5e-08 Score=79.16 Aligned_cols=123 Identities=21% Similarity=0.318 Sum_probs=92.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
.|+..|+--.|||||+.+++|..... ......+.|....++..+. .+..+.++|.||+.+ +.+.+..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~-----------~i~~mia 69 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPD-----------FISNLLA 69 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHH-----------HHHHHHh
Confidence 47888999999999999999886422 1234567888888888777 556899999999864 2233334
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHh
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL 161 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l 161 (221)
.....|..++|++.++.+..+..+.+..|.- +|.. +.++|+||+|+.+ ...+++..
T Consensus 70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdl-lgi~---~giivltk~D~~d--~~r~e~~i 125 (447)
T COG3276 70 GLGGIDYALLVVAADEGLMAQTGEHLLILDL-LGIK---NGIIVLTKADRVD--EARIEQKI 125 (447)
T ss_pred hhcCCceEEEEEeCccCcchhhHHHHHHHHh-cCCC---ceEEEEecccccc--HHHHHHHH
Confidence 5567799999999998999998888777764 5655 6899999999987 44444433
No 315
>PRK00098 GTPase RsgA; Reviewed
Probab=98.82 E-value=2.6e-08 Score=79.93 Aligned_cols=60 Identities=32% Similarity=0.396 Sum_probs=39.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCC----C--CcceeeEEEEEEeeCCceEEEEeCCCCCCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----S--GVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~----~--~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (221)
+..++++|++|+|||||+|+|++......+... . .+|+...... . .....++||||+..+
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~--~--~~~~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYD--L--PGGGLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEE--c--CCCcEEEECCCcCcc
Confidence 468999999999999999999998754433111 1 1233232222 2 234589999999853
No 316
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.81 E-value=2e-08 Score=91.52 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=74.8
Q ss_pred CHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC-----------------ceEEEEeCCCCCCCCCCchHHHHHH
Q 027618 31 GKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG-----------------QVVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 31 GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
+||||+.+|.+.++... ...+.|++...+.+++... ..+.||||||+.++.
T Consensus 473 ~KTtLLD~iR~t~v~~~--EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~---------- 540 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKK--EAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFT---------- 540 (1049)
T ss_pred ccccHHHHHhCCCcccc--cCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHH----------
Confidence 49999999999988433 4567777777666655211 138999999965431
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.........+|++++|+++++.+..++...+..++.. ..|+++++||+|+..
T Consensus 541 -~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~-----~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 541 -SLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY-----KTPFVVAANKIDLIP 592 (1049)
T ss_pred -HHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc-----CCCEEEEEECCCCcc
Confidence 1112345668999999999988888888888776653 237999999999864
No 317
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.6e-08 Score=87.19 Aligned_cols=122 Identities=25% Similarity=0.321 Sum_probs=87.0
Q ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCccccc--------------ccCCCCcceeeEEEEEEeeCCceEEEEeCC
Q 027618 12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTP 77 (221)
Q Consensus 12 ~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtP 77 (221)
+++++...+.+.++.+-..|||||..+|+..+...+ +....++|......+... .+..+.+||+|
T Consensus 2 ~~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~-~~~~~nlidsp 80 (887)
T KOG0467|consen 2 LQKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH-KDYLINLIDSP 80 (887)
T ss_pred CCCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc-CceEEEEecCC
Confidence 345666779999999999999999999877654221 123345666655555444 67789999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618 78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (221)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (221)
|+-||++... .+..-.|+.++++|+.++...+....+++..- .. ...++|+||+|++
T Consensus 81 ghvdf~sevs-----------sas~l~d~alvlvdvvegv~~qt~~vlrq~~~---~~--~~~~lvinkidrl 137 (887)
T KOG0467|consen 81 GHVDFSSEVS-----------SASRLSDGALVLVDVVEGVCSQTYAVLRQAWI---EG--LKPILVINKIDRL 137 (887)
T ss_pred Cccchhhhhh-----------hhhhhcCCcEEEEeeccccchhHHHHHHHHHH---cc--CceEEEEehhhhH
Confidence 9999764322 33344499999999998999888777664322 11 1588999999965
No 318
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.79 E-value=1.7e-08 Score=82.98 Aligned_cols=123 Identities=18% Similarity=0.167 Sum_probs=66.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccc----cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFK----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
+..++++|.+|+|||||+|+|++..... ......++|....... .+..+.++||||+.........+..+-.
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~----~~~~~~l~DtPG~~~~~~~~~~l~~~~l 229 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIP----LDDGHSLYDTPGIINSHQMAHYLDKKDL 229 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEE----eCCCCEEEECCCCCChhHhhhhcCHHHH
Confidence 3689999999999999999999864311 1223344455443322 2344679999999863211111111111
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+.+. -........+.++....+.......++.+.. . ...+.+.+++.+.+.
T Consensus 230 ~~~~-~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~---~--~~~~~~~~~~~~~~h 280 (360)
T TIGR03597 230 KYIT-PKKEIKPKTYQLNPNQTLFLGGLARFDYLKG---E--KTSFTFYVSNELNIH 280 (360)
T ss_pred hhcC-CCCccCceEEEeCCCCEEEEceEEEEEEecC---C--ceEEEEEccCCceeE
Confidence 1111 1134466777777664444444333333322 1 113566677766664
No 319
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=1e-07 Score=73.67 Aligned_cols=127 Identities=16% Similarity=0.189 Sum_probs=77.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee---CCceEEEEeCCCCCCCCCCchH-------
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEF------- 88 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~------- 88 (221)
.+.|+.+|.+|.|||||++.|.+...-....+..-.+......+++.. -.-.++++||.|+++.-...++
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 478999999999999999999987753222222222222222222221 1236899999999974332221
Q ss_pred HHHHHHHHHH-----------hhcCCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 89 VGKEIVKCIG-----------MAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 89 ~~~~~~~~~~-----------~~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+..++..++. ..-..+|+.+|.+..+ ..+...+.-.++.|.. ..++|.|+.|+|.+.
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds------kVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS------KVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh------hhhhHHHHHHhhhhh
Confidence 1112211111 1125679999999875 4566666666655544 236888999999886
No 320
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.78 E-value=3.1e-08 Score=81.63 Aligned_cols=154 Identities=20% Similarity=0.262 Sum_probs=100.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc-------------cCCCCcceeeEEEEEEeeC----CceEEEEeCCC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLKD----GQVVNVIDTPG 78 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~~----~~~~~liDtPG 78 (221)
....+.+.++.+-..|||||..+|+....-... ....|.|...+.....|.. ...+.+|||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 344578899999999999999998755421110 1245778887777776632 24688999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChh---
Q 027618 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDE--- 155 (221)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~--- 155 (221)
+-||.-... +++.. +.+.|+|+|++.+...+.... +--.+.... -++.|+||+|+-..+.+
T Consensus 86 HVDFsYEVS-------RSLAA----CEGalLvVDAsQGveAQTlAN---~YlAle~~L--eIiPViNKIDLP~Adpervk 149 (603)
T COG0481 86 HVDFSYEVS-------RSLAA----CEGALLVVDASQGVEAQTLAN---VYLALENNL--EIIPVLNKIDLPAADPERVK 149 (603)
T ss_pred ccceEEEeh-------hhHhh----CCCcEEEEECccchHHHHHHH---HHHHHHcCc--EEEEeeecccCCCCCHHHHH
Confidence 999864433 33333 379999999997776555222 111112221 48999999998876654
Q ss_pred -hHHHHhcccCCchhhhhHHHHHhHHHHHHh
Q 027618 156 -TLEDYLGRECPKPLKKGATKLRDQQFEVDS 185 (221)
Q Consensus 156 -~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 185 (221)
.+++.+.-++......|++...++.+.++.
T Consensus 150 ~eIe~~iGid~~dav~~SAKtG~gI~~iLe~ 180 (603)
T COG0481 150 QEIEDIIGIDASDAVLVSAKTGIGIEDVLEA 180 (603)
T ss_pred HHHHHHhCCCcchheeEecccCCCHHHHHHH
Confidence 345555434555566777776666665554
No 321
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.77 E-value=1.5e-07 Score=72.64 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=22.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
..++..|+++|-.|+||||++.+|...
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHH
Confidence 355678899999999999999887654
No 322
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.1e-07 Score=73.99 Aligned_cols=120 Identities=15% Similarity=0.214 Sum_probs=83.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCccc--------------ccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAF--------------KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (221)
+.+...|+.+|+-..|||||-.+|+..-.. .......++|.......+.. ..+.+..+|+||..|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaD 87 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHH
Confidence 455689999999999999999888653210 01122346677666666666 778899999999653
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+.+... ..+.|+.|+|+++.+..-++.++-+-..++. |.+ .+++++||+|..+
T Consensus 88 -------YvKNMItg----AaqmDgAILVVsA~dGpmPqTrEHiLlarqv-Gvp---~ivvflnK~Dmvd 142 (394)
T COG0050 88 -------YVKNMITG----AAQMDGAILVVAATDGPMPQTREHILLARQV-GVP---YIVVFLNKVDMVD 142 (394)
T ss_pred -------HHHHHhhh----HHhcCccEEEEEcCCCCCCcchhhhhhhhhc-CCc---EEEEEEecccccC
Confidence 22222222 2344899999999988888887665444443 544 6999999999987
No 323
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.1e-07 Score=82.08 Aligned_cols=116 Identities=18% Similarity=0.185 Sum_probs=81.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-----------------eCCceEEEEeCCCCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-----------------KDGQVVNVIDTPGLF 80 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----------------~~~~~~~liDtPG~~ 80 (221)
+.+.++++|+-.+|||-|+..|-+.++..... .+.|........+. ..-..+.+|||||..
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegea--ggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEA--GGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccc--cceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 34788999999999999999999988754432 33333322211111 033458899999977
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.|..-. ......+|.+|+|+|+-+++.++....+..|+.. .-|+||.+||+|++-
T Consensus 552 sFtnlR-----------srgsslC~~aIlvvdImhGlepqtiESi~lLR~r-----ktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 552 SFTNLR-----------SRGSSLCDLAILVVDIMHGLEPQTIESINLLRMR-----KTPFIVALNKIDRLY 606 (1064)
T ss_pred hhhhhh-----------hccccccceEEEEeehhccCCcchhHHHHHHHhc-----CCCeEEeehhhhhhc
Confidence 643211 1223345899999999989999998888888764 238999999999973
No 324
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.74 E-value=4e-08 Score=74.82 Aligned_cols=105 Identities=20% Similarity=0.287 Sum_probs=71.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
-+|+++|-|++|||||+..|+...- ...+...+|..|....+.+ ++-.+.++|.||+.+.........++.. .
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~S--eaA~yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGAsqgkGRGRQvi----a 135 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHS--EAASYEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGASQGKGRGRQVI----A 135 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchh--hhhceeeeEEEeecceEEe-cCceEEEecCcccccccccCCCCCceEE----E
Confidence 6899999999999999999987653 2234456778888888888 9999999999999864333322222222 2
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG 133 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~ 133 (221)
..+-+|.++.|+|++ +... .+..++.-.+..|
T Consensus 136 vArtaDlilMvLDat-k~e~-qr~~le~ELe~vG 167 (364)
T KOG1486|consen 136 VARTADLILMVLDAT-KSED-QREILEKELEAVG 167 (364)
T ss_pred EeecccEEEEEecCC-cchh-HHHHHHHHHHHhc
Confidence 345669999999988 3322 2334444334345
No 325
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=1.5e-07 Score=79.24 Aligned_cols=133 Identities=19% Similarity=0.241 Sum_probs=86.8
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccc-----------------------------cccCCCCcceeeEEEEEE
Q 027618 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMQRTV 64 (221)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~ 64 (221)
+...+...++++|+..+|||||+-.|+...... ......|.|.......++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 334466889999999999999998876443211 112234667766666666
Q ss_pred eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCC-----CCC--HHHHHHHHHHHHHhccccc
Q 027618 65 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS-----RFS--QEEEAALHSLQTLFGKKIF 137 (221)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~-----~~~--~~~~~~~~~l~~~~~~~~~ 137 (221)
. ....++++|+||+-+|... +......+|+.++|+|++. .|. .+.++....++ .+|..
T Consensus 252 s-~~~~~tliDaPGhkdFi~n-----------mi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr-~Lgi~-- 316 (603)
T KOG0458|consen 252 S-KSKIVTLIDAPGHKDFIPN-----------MISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLR-SLGIS-- 316 (603)
T ss_pred c-CceeEEEecCCCccccchh-----------hhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHH-HcCcc--
Confidence 5 7788999999998776422 1134456799999999873 122 11234443444 45644
Q ss_pred ccEEEEEecCCCCCCChhhHHHHhc
Q 027618 138 DYMIVVFTGGDELEDNDETLEDYLG 162 (221)
Q Consensus 138 ~~~ivv~tk~D~~~~~~~~~~~~l~ 162 (221)
.++|++||+|...=+.+.+++..+
T Consensus 317 -qlivaiNKmD~V~Wsq~RF~eIk~ 340 (603)
T KOG0458|consen 317 -QLIVAINKMDLVSWSQDRFEEIKN 340 (603)
T ss_pred -eEEEEeecccccCccHHHHHHHHH
Confidence 699999999998544555655444
No 326
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.73 E-value=6.6e-08 Score=78.78 Aligned_cols=89 Identities=16% Similarity=0.061 Sum_probs=62.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeeEEEEEEeeCC----------------ceEEEEeCCCCCCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFDF 82 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG~~~~ 82 (221)
..++++|.+++|||||+|+|++... ... ....+|..+....+..+.. ..+.++|.||+...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a--~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAA--NPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccC--CCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 6789999999999999999999875 322 2244555566555555332 25889999999864
Q ss_pred CCCchHHHHHHHHHHHhhcCCCcEEEEEEeCC
Q 027618 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (221)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (221)
..........+...++.+ |+++.|++..
T Consensus 81 As~g~Glgn~fL~~ir~~----d~l~hVvr~f 108 (368)
T TIGR00092 81 ASKGEGLGNQFLANIREV----DIIQHVVRCF 108 (368)
T ss_pred hhcccCcchHHHHHHHhC----CEEEEEEeCC
Confidence 443444555566555554 9999999874
No 327
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.73 E-value=3.5e-08 Score=79.84 Aligned_cols=63 Identities=25% Similarity=0.357 Sum_probs=47.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~ 85 (221)
...+++++|-+++||||+||+|++......+. .+|.|...+.... ...+.++||||+......
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~-~PG~Tk~~q~i~~----~~~i~LlDtPGii~~~~~ 193 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSN-RPGTTKGIQWIKL----DDGIYLLDTPGIIPPKFD 193 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCC-CCceecceEEEEc----CCCeEEecCCCcCCCCcc
Confidence 34789999999999999999999998755543 4466666554443 345889999999875443
No 328
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.72 E-value=1.1e-07 Score=77.75 Aligned_cols=123 Identities=20% Similarity=0.172 Sum_probs=67.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccc--------ccccCCC-Cc--------ceeeEEEEEE-----------ee--C
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAF--------KSRASSS-GV--------TSTCEMQRTV-----------LK--D 67 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~--------~~~~~~~-~~--------t~~~~~~~~~-----------~~--~ 67 (221)
.+..|+++|++|+||||++..|+..... ..+.... .. ...+...... .. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 3578999999999999999888643210 0000000 00 0000000000 00 1
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (221)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~ 147 (221)
+..++||||||... .+.....++.+.+... .++.+++|+++.... ......++.+.. ...--+++||.
T Consensus 320 ~~DvVLIDTaGRs~---kd~~lm~EL~~~lk~~--~PdevlLVLsATtk~-~d~~~i~~~F~~------~~idglI~TKL 387 (436)
T PRK11889 320 RVDYILIDTAGKNY---RASETVEEMIETMGQV--EPDYICLTLSASMKS-KDMIEIITNFKD------IHIDGIVFTKF 387 (436)
T ss_pred CCCEEEEeCccccC---cCHHHHHHHHHHHhhc--CCCeEEEEECCccCh-HHHHHHHHHhcC------CCCCEEEEEcc
Confidence 35789999999864 2344455665555433 357788888876222 222334433332 12456999999
Q ss_pred CCCCC
Q 027618 148 DELED 152 (221)
Q Consensus 148 D~~~~ 152 (221)
|....
T Consensus 388 DET~k 392 (436)
T PRK11889 388 DETAS 392 (436)
T ss_pred cCCCC
Confidence 98753
No 329
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.72 E-value=6.2e-08 Score=79.06 Aligned_cols=121 Identities=21% Similarity=0.219 Sum_probs=69.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc-cCCCCcceeeEEEE-----------------------------EEeeC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQR-----------------------------TVLKD 67 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-~~~~~~t~~~~~~~-----------------------------~~~~~ 67 (221)
++..|+||||||+||||++-.|......... ....-.|+.+.+.. ..+ .
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~ 280 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-R 280 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-h
Confidence 3689999999999999999887665431111 11111222221111 111 4
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (221)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~ 147 (221)
...++||||.|... .+.....++...+..+ ...-+.+|++++.. .......++.+... +.--+++||.
T Consensus 281 ~~d~ILVDTaGrs~---~D~~~i~el~~~~~~~--~~i~~~Lvlsat~K-~~dlkei~~~f~~~------~i~~~I~TKl 348 (407)
T COG1419 281 DCDVILVDTAGRSQ---YDKEKIEELKELIDVS--HSIEVYLVLSATTK-YEDLKEIIKQFSLF------PIDGLIFTKL 348 (407)
T ss_pred cCCEEEEeCCCCCc---cCHHHHHHHHHHHhcc--ccceEEEEEecCcc-hHHHHHHHHHhccC------CcceeEEEcc
Confidence 55799999999874 2344556666665544 33455677777622 22223333333321 2356899999
Q ss_pred CCCC
Q 027618 148 DELE 151 (221)
Q Consensus 148 D~~~ 151 (221)
|...
T Consensus 349 DET~ 352 (407)
T COG1419 349 DETT 352 (407)
T ss_pred cccC
Confidence 9875
No 330
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.71 E-value=1.9e-07 Score=76.46 Aligned_cols=129 Identities=20% Similarity=0.221 Sum_probs=67.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCccccccc-CCCCcceee------------------EEEE-----------EEee
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRA-SSSGVTSTC------------------EMQR-----------TVLK 66 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~-~~~~~t~~~------------------~~~~-----------~~~~ 66 (221)
..+..++|+|++|+||||++..|.+......+. ...-.+... .... ..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l- 213 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL- 213 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-
Confidence 345789999999999999998887543211000 000000000 0000 112
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccc---cccEEEE
Q 027618 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKI---FDYMIVV 143 (221)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~ivv 143 (221)
.+..+++|||||.... +....+++. .+... ..+.-.++|+++....... ...++.+....+.+. ....-+|
T Consensus 214 ~~~DlVLIDTaG~~~~---d~~l~e~La-~L~~~-~~~~~~lLVLsAts~~~~l-~evi~~f~~~~~~p~~~~~~~~~~I 287 (374)
T PRK14722 214 RNKHMVLIDTIGMSQR---DRTVSDQIA-MLHGA-DTPVQRLLLLNATSHGDTL-NEVVQAYRSAAGQPKAALPDLAGCI 287 (374)
T ss_pred cCCCEEEEcCCCCCcc---cHHHHHHHH-HHhcc-CCCCeEEEEecCccChHHH-HHHHHHHHHhhcccccccCCCCEEE
Confidence 4567899999998742 222233333 22222 2334567888887443322 334444444433211 1134688
Q ss_pred EecCCCCCC
Q 027618 144 FTGGDELED 152 (221)
Q Consensus 144 ~tk~D~~~~ 152 (221)
+||.|....
T Consensus 288 ~TKlDEt~~ 296 (374)
T PRK14722 288 LTKLDEASN 296 (374)
T ss_pred EeccccCCC
Confidence 999998753
No 331
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.71 E-value=6.5e-08 Score=70.21 Aligned_cols=57 Identities=30% Similarity=0.419 Sum_probs=38.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (221)
...+++++|.+|+||||++|++++........ ..+.|....... .+..+.++||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~-~~~~t~~~~~~~----~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSP-SPGYTKGEQLVK----ITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeeeeeEEEE----cCCCEEEEECcCC
Confidence 45788999999999999999999865433322 223333322111 3447899999995
No 332
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=1.7e-07 Score=66.80 Aligned_cols=116 Identities=11% Similarity=0.045 Sum_probs=75.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
..-+++++|--+||||||++.|=.... .. ..+|..+....... .+..++.+|.-|.. +-++.+
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl--~q---hvPTlHPTSE~l~I-g~m~ftt~DLGGH~-----------qArr~w 81 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRL--GQ---HVPTLHPTSEELSI-GGMTFTTFDLGGHL-----------QARRVW 81 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccc--cc---cCCCcCCChHHhee-cCceEEEEccccHH-----------HHHHHH
Confidence 346889999999999999999854432 11 12233333333444 78889999988853 233555
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+.+++.+|++++.+|+-+.-...+ +..++.+... -.-.+.|++++.||+|.-.
T Consensus 82 kdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~-e~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 82 KDYFPQVDAIVYLVDAYDQERFAESKKELDALLSD-ESLATVPFLILGNKIDIPY 135 (193)
T ss_pred HHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhH-HHHhcCcceeecccccCCC
Confidence 677788899999999875433333 3444443332 1114558999999999875
No 333
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.70 E-value=1.2e-06 Score=70.83 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=21.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
.+....|++.|++|+|||||++.|..
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999999999988643
No 334
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.67 E-value=3.8e-07 Score=72.75 Aligned_cols=130 Identities=14% Similarity=0.197 Sum_probs=86.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc---------c----------------------cCCCCcceeeEEEEEE
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS---------R----------------------ASSSGVTSTCEMQRTV 64 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~---------~----------------------~~~~~~t~~~~~~~~~ 64 (221)
+...++++-+|.-..||||||-+|+....... . ....++|...-+-...
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 34558999999999999999988876543110 0 0123666666554444
Q ss_pred eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEE
Q 027618 65 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (221)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (221)
. ..+.+.+.||||+.. ..+-+..-..-+|+.++++|+...+-.+.++ ...+..++|-. ++++.+
T Consensus 83 T-~KRkFIiADTPGHeQ-----------YTRNMaTGASTadlAIlLVDAR~Gvl~QTrR-Hs~I~sLLGIr---hvvvAV 146 (431)
T COG2895 83 T-EKRKFIIADTPGHEQ-----------YTRNMATGASTADLAILLVDARKGVLEQTRR-HSFIASLLGIR---HVVVAV 146 (431)
T ss_pred c-ccceEEEecCCcHHH-----------HhhhhhcccccccEEEEEEecchhhHHHhHH-HHHHHHHhCCc---EEEEEE
Confidence 4 678999999999642 1122222234458999999998666555533 34556666755 799999
Q ss_pred ecCCCCCCChhhHHHHh
Q 027618 145 TGGDELEDNDETLEDYL 161 (221)
Q Consensus 145 tk~D~~~~~~~~~~~~l 161 (221)
||+|+.+-+.+.+++..
T Consensus 147 NKmDLvdy~e~~F~~I~ 163 (431)
T COG2895 147 NKMDLVDYSEEVFEAIV 163 (431)
T ss_pred eeecccccCHHHHHHHH
Confidence 99999865455454433
No 335
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.67 E-value=2.2e-07 Score=75.04 Aligned_cols=125 Identities=17% Similarity=0.164 Sum_probs=69.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCccccc------ccCCCC-----------cceeeEEEEEE---------------
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS------RASSSG-----------VTSTCEMQRTV--------------- 64 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~------~~~~~~-----------~t~~~~~~~~~--------------- 64 (221)
.++..|+++|++|+||||++..|++...... ...+.. ...........
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988765432111 000000 00000000000
Q ss_pred -eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh----cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc
Q 027618 65 -LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA----KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 139 (221)
Q Consensus 65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (221)
...+..+++|||||.... ......++.+....+ ...++..++|+++..+.. .........+. ...
T Consensus 192 ~~~~~~D~ViIDTaGr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~~~a~~f~~~-----~~~ 261 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--ALSQAKAFHEA-----VGL 261 (318)
T ss_pred HHhCCCCEEEEeCCCCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HHHHHHHHHhh-----CCC
Confidence 013457999999998743 333445555544322 235688999999984322 21112222222 124
Q ss_pred EEEEEecCCCCC
Q 027618 140 MIVVFTGGDELE 151 (221)
Q Consensus 140 ~ivv~tk~D~~~ 151 (221)
.-+|+||.|...
T Consensus 262 ~giIlTKlD~t~ 273 (318)
T PRK10416 262 TGIILTKLDGTA 273 (318)
T ss_pred CEEEEECCCCCC
Confidence 679999999764
No 336
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.67 E-value=1.3e-07 Score=83.56 Aligned_cols=123 Identities=21% Similarity=0.203 Sum_probs=66.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCccccccc-CCCCcceeeEE------------------EE-----------EEeeCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRA-SSSGVTSTCEM------------------QR-----------TVLKDG 68 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~-~~~~~t~~~~~------------------~~-----------~~~~~~ 68 (221)
+..|+|+|++|+||||++..|++......+. ...-.+..... .. ... .+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~-~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL-GD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh-cC
Confidence 5789999999999999999988754211110 00000000000 00 011 34
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 027618 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (221)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D 148 (221)
..++||||||.... +....+++..... ...++-.++|+++.... ..-...++.+....+.+ .--+|+||.|
T Consensus 264 ~D~VLIDTAGRs~~---d~~l~eel~~l~~--~~~p~e~~LVLsAt~~~-~~l~~i~~~f~~~~~~~---i~glIlTKLD 334 (767)
T PRK14723 264 KHLVLIDTVGMSQR---DRNVSEQIAMLCG--VGRPVRRLLLLNAASHG-DTLNEVVHAYRHGAGED---VDGCIITKLD 334 (767)
T ss_pred CCEEEEeCCCCCcc---CHHHHHHHHHHhc--cCCCCeEEEEECCCCcH-HHHHHHHHHHhhcccCC---CCEEEEeccC
Confidence 57899999997642 2334444444322 23456788898887321 11123333333321112 3568899999
Q ss_pred CCC
Q 027618 149 ELE 151 (221)
Q Consensus 149 ~~~ 151 (221)
...
T Consensus 335 Et~ 337 (767)
T PRK14723 335 EAT 337 (767)
T ss_pred CCC
Confidence 864
No 337
>PTZ00099 rab6; Provisional
Probab=98.67 E-value=1.9e-07 Score=69.19 Aligned_cols=105 Identities=16% Similarity=0.023 Sum_probs=63.1
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEec
Q 027618 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTG 146 (221)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk 146 (221)
...+.+|||||...+. .....+++.+|++|+|+|++++.+... ..|+..+....+. ..|+++|+||
T Consensus 28 ~v~l~iwDt~G~e~~~-----------~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~--~~piilVgNK 94 (176)
T PTZ00099 28 PVRLQLWDTAGQERFR-----------SLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGK--DVIIALVGNK 94 (176)
T ss_pred EEEEEEEECCChHHhh-----------hccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEEC
Confidence 3578899999975432 223356688999999999986555444 4566666554332 2478999999
Q ss_pred CCCCCCC---hhhHHHHhcccCCchhhhhHHHHHhHHHHHHh
Q 027618 147 GDELEDN---DETLEDYLGRECPKPLKKGATKLRDQQFEVDS 185 (221)
Q Consensus 147 ~D~~~~~---~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 185 (221)
+|+.... ......+.......++..++.....+.+.++.
T Consensus 95 ~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~ 136 (176)
T PTZ00099 95 TDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKK 136 (176)
T ss_pred cccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 9975321 12222333322223444565555555555544
No 338
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.65 E-value=7.6e-07 Score=70.43 Aligned_cols=76 Identities=20% Similarity=0.174 Sum_probs=46.5
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh----cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEE
Q 027618 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA----KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV 142 (221)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iv 142 (221)
.+..++++||||.... +.....++.+..... ...+|.+++|+++.. ...+......+.+.. ...-+
T Consensus 153 ~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~-----~~~g~ 222 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAV-----GLTGI 222 (272)
T ss_pred CCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhC-----CCCEE
Confidence 4467899999998752 344455555544322 235789999999973 333333333333322 24679
Q ss_pred EEecCCCCCC
Q 027618 143 VFTGGDELED 152 (221)
Q Consensus 143 v~tk~D~~~~ 152 (221)
|+||.|....
T Consensus 223 IlTKlDe~~~ 232 (272)
T TIGR00064 223 ILTKLDGTAK 232 (272)
T ss_pred EEEccCCCCC
Confidence 9999998653
No 339
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.65 E-value=6.1e-08 Score=80.54 Aligned_cols=62 Identities=32% Similarity=0.340 Sum_probs=48.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~ 85 (221)
..+|++||-+++||||+||+|.|.+.-.. .+++|.|...+...+ ...+.++|+||+--++..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~l----s~~v~LCDCPGLVfPSf~ 375 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFL----SPSVCLCDCPGLVFPSFS 375 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEc----CCCceecCCCCccccCCC
Confidence 58999999999999999999999987433 456677777665443 456789999999754433
No 340
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.5e-07 Score=75.92 Aligned_cols=89 Identities=20% Similarity=0.163 Sum_probs=63.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-----------------CCceEEEEeCCCCCCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGLFDF 82 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtPG~~~~ 82 (221)
.+++++|.|++|||||+|+++..... ....+.+|..++...+..+ ....+.|+|.+|+-..
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~--~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAE--IANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCcc--ccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 68999999999999999999987742 2234455655555443321 1125789999999876
Q ss_pred CCCchHHHHHHHHHHHhhcCCCcEEEEEEeCC
Q 027618 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (221)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (221)
.+..+-+..++..-++. +|+|+-|+++.
T Consensus 81 As~GeGLGNkFL~~IRe----vdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLDNIRE----VDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHHhhhh----cCeEEEEEEec
Confidence 66666677777766554 49999999865
No 341
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.62 E-value=2.4e-07 Score=77.07 Aligned_cols=123 Identities=19% Similarity=0.224 Sum_probs=65.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccc----c-ccCC------------------CCcceeeEEE-------EEEee
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK----S-RASS------------------SGVTSTCEMQ-------RTVLK 66 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~----~-~~~~------------------~~~t~~~~~~-------~~~~~ 66 (221)
..+.+|+|+|++|+||||++..|.+..... . +... .+........ ....
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l- 267 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHEL- 267 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHh-
Confidence 456799999999999999999887642110 0 0000 0000000000 0111
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 027618 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG 146 (221)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk 146 (221)
.+....+|||+|.... .....+++... .. ....+-.++|++++.... .+..+...|.. ...--+++||
T Consensus 268 ~~~d~VLIDTaGrsqr---d~~~~~~l~~l-~~-~~~~~~~~LVl~at~~~~-----~~~~~~~~f~~--~~~~~~I~TK 335 (420)
T PRK14721 268 RGKHMVLIDTVGMSQR---DQMLAEQIAML-SQ-CGTQVKHLLLLNATSSGD-----TLDEVISAYQG--HGIHGCIITK 335 (420)
T ss_pred cCCCEEEecCCCCCcc---hHHHHHHHHHH-hc-cCCCceEEEEEcCCCCHH-----HHHHHHHHhcC--CCCCEEEEEe
Confidence 4456899999998742 22233444332 22 223456778888772221 12222222221 2245689999
Q ss_pred CCCCCC
Q 027618 147 GDELED 152 (221)
Q Consensus 147 ~D~~~~ 152 (221)
.|....
T Consensus 336 lDEt~~ 341 (420)
T PRK14721 336 VDEAAS 341 (420)
T ss_pred eeCCCC
Confidence 998753
No 342
>PRK13796 GTPase YqeH; Provisional
Probab=98.61 E-value=6.3e-08 Score=79.81 Aligned_cols=59 Identities=29% Similarity=0.285 Sum_probs=39.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcc----cccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRA----FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (221)
...+.++|.+|+|||||||+|++... ........++|....... + +....++||||+..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~--l--~~~~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIP--L--DDGSFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEE--c--CCCcEEEECCCccc
Confidence 46899999999999999999986531 111123345555544332 2 23357999999974
No 343
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=4.9e-07 Score=65.88 Aligned_cols=120 Identities=20% Similarity=0.096 Sum_probs=77.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
...+.++++|..|.||||++++.+-...-.....+.+....+....-.. +..++.+|||.|.....+-.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~-g~irf~~wdtagqEk~gglrd--------- 77 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNR-GQIRFNVWDTAGQEKKGGLRD--------- 77 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeeccc-CcEEEEeeecccceeeccccc---------
Confidence 4578999999999999999988765544222222233333333222222 336788999999765433222
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
-.+-+....++++++..+++-.. ..|.+.+.+.++. .|+++++||.|--.
T Consensus 78 --gyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~~ 128 (216)
T KOG0096|consen 78 --GYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIKA 128 (216)
T ss_pred --ccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC---CCeeeeccceeccc
Confidence 11222346678888887777665 5677777776665 38999999999554
No 344
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.58 E-value=2.3e-07 Score=69.81 Aligned_cols=124 Identities=20% Similarity=0.288 Sum_probs=78.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
.++|+++|.+|+||||+=..+.... ..-+....+.|......++.+..+.-+.+||.-|... .+...+...-.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny-~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~------fmen~~~~q~d 76 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANY-IARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEE------FMENYLSSQED 76 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhh-hhhhhhccCCcceeeehhhhhhhhheeehhccCCcHH------HHHHHHhhcch
Confidence 4789999999999999765554322 2223345567777777777774456777899877431 11222222223
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH----HHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE----EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
..+..++++++|+|+..+--..| +..++.+.+. .....+...+.|.|+...
T Consensus 77 ~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~---SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 77 NIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN---SPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred hhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc---CCcceEEEEEeechhccc
Confidence 45677899999999974422222 4445555543 223368999999999864
No 345
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=5.7e-07 Score=76.27 Aligned_cols=122 Identities=17% Similarity=0.202 Sum_probs=92.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc----------------cCCCCcceeeEEEEEEeeCCceEEEEeCCCC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (221)
-...+.|++.-+-.+||||+-+.++........ ....++|.........| ...++.+|||||+
T Consensus 36 ~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w-~~~~iNiIDTPGH 114 (721)
T KOG0465|consen 36 LNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW-RDYRINIIDTPGH 114 (721)
T ss_pred hhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee-ccceeEEecCCCc
Confidence 356688999999999999999887765433211 11235667676677778 7899999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCh
Q 027618 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND 154 (221)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 154 (221)
.+|..+.+ .+++..|+.++|+++..+...+.....+++++. ..|.+..+||+|+...+.
T Consensus 115 vDFT~EVe-----------RALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry-----~vP~i~FiNKmDRmGa~~ 173 (721)
T KOG0465|consen 115 VDFTFEVE-----------RALRVLDGAVLVLDAVAGVESQTETVWRQMKRY-----NVPRICFINKMDRMGASP 173 (721)
T ss_pred eeEEEEeh-----------hhhhhccCeEEEEEcccceehhhHHHHHHHHhc-----CCCeEEEEehhhhcCCCh
Confidence 99876655 455666898999988778888888888888775 237889999999987544
No 346
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.57 E-value=2.7e-07 Score=76.32 Aligned_cols=124 Identities=19% Similarity=0.233 Sum_probs=65.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc-------cCC---------------CCcceeeE--EE----EEEeeCCc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-------ASS---------------SGVTSTCE--MQ----RTVLKDGQ 69 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-------~~~---------------~~~t~~~~--~~----~~~~~~~~ 69 (221)
.+..++++|++|+||||++..|+.......+ ..+ .+...... .. ... ..+.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~-~~~~ 300 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA-RDGS 300 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH-hCCC
Confidence 3467899999999999999887643211000 000 00000000 00 000 1355
Q ss_pred eEEEEeCCCCCCCCCCchHHHHHHHHHHHhhc-CCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 027618 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK-DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (221)
Q Consensus 70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D 148 (221)
.++||||||+... ......++...+.... +..+-.++|+++..... .....++ .|.. ...--+|+||.|
T Consensus 301 D~VLIDTaGr~~r---d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~----~f~~--~~~~glIlTKLD 370 (432)
T PRK12724 301 ELILIDTAGYSHR---NLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLK----AYES--LNYRRILLTKLD 370 (432)
T ss_pred CEEEEeCCCCCcc---CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHH----HhcC--CCCCEEEEEccc
Confidence 7899999998642 2334445555443321 22456788888873321 1222322 2221 124669999999
Q ss_pred CCCC
Q 027618 149 ELED 152 (221)
Q Consensus 149 ~~~~ 152 (221)
....
T Consensus 371 Et~~ 374 (432)
T PRK12724 371 EADF 374 (432)
T ss_pred CCCC
Confidence 8753
No 347
>PRK14974 cell division protein FtsY; Provisional
Probab=98.56 E-value=8.6e-07 Score=71.91 Aligned_cols=73 Identities=18% Similarity=0.120 Sum_probs=44.1
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (221)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~ 147 (221)
+..+++|||||... .+.....++....... .+|.+++|+++.... ......+.+.+.. ..--+++||.
T Consensus 222 ~~DvVLIDTaGr~~---~~~~lm~eL~~i~~~~--~pd~~iLVl~a~~g~--d~~~~a~~f~~~~-----~~~giIlTKl 289 (336)
T PRK14974 222 GIDVVLIDTAGRMH---TDANLMDELKKIVRVT--KPDLVIFVGDALAGN--DAVEQAREFNEAV-----GIDGVILTKV 289 (336)
T ss_pred CCCEEEEECCCccC---CcHHHHHHHHHHHHhh--CCceEEEeeccccch--hHHHHHHHHHhcC-----CCCEEEEeee
Confidence 45689999999874 2344556665554332 468889999886321 2222223332221 2466999999
Q ss_pred CCCCC
Q 027618 148 DELED 152 (221)
Q Consensus 148 D~~~~ 152 (221)
|....
T Consensus 290 D~~~~ 294 (336)
T PRK14974 290 DADAK 294 (336)
T ss_pred cCCCC
Confidence 98653
No 348
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.55 E-value=1.6e-06 Score=72.69 Aligned_cols=71 Identities=18% Similarity=0.141 Sum_probs=43.6
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 027618 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (221)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D 148 (221)
..++++||||.... ++...+++...... ..+|.+++|+++... ...++..+. |... ....-+|+||.|
T Consensus 176 ~DvVIIDTAGr~~~---d~~lm~El~~l~~~--~~pdevlLVvda~~g-----q~av~~a~~-F~~~-l~i~gvIlTKlD 243 (437)
T PRK00771 176 ADVIIVDTAGRHAL---EEDLIEEMKEIKEA--VKPDEVLLVIDATIG-----QQAKNQAKA-FHEA-VGIGGIIITKLD 243 (437)
T ss_pred CCEEEEECCCcccc---hHHHHHHHHHHHHH--hcccceeEEEecccc-----HHHHHHHHH-HHhc-CCCCEEEEeccc
Confidence 47899999998742 34455555555332 346889999998743 233344433 3322 123568899999
Q ss_pred CCC
Q 027618 149 ELE 151 (221)
Q Consensus 149 ~~~ 151 (221)
...
T Consensus 244 ~~a 246 (437)
T PRK00771 244 GTA 246 (437)
T ss_pred CCC
Confidence 753
No 349
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.54 E-value=2.5e-07 Score=65.22 Aligned_cols=120 Identities=17% Similarity=0.078 Sum_probs=76.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
.-..+|+++|.+..|||||+-...+...........+.........+.. ....+.+||.-|.. +....
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~-t~IsfSIwdlgG~~-----------~~~n~ 85 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRG-TDISFSIWDLGGQR-----------EFINM 85 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecc-eEEEEEEEecCCcH-----------hhhcc
Confidence 3458999999999999999988888765322222223222222222211 33467789987743 34455
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
++.+...+-+++|++|.+.+.+... ..|.++.+.+ ..-.-.++|+||-|..-
T Consensus 86 lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~---NktAiPilvGTKyD~fi 138 (205)
T KOG1673|consen 86 LPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGL---NKTAIPILVGTKYDLFI 138 (205)
T ss_pred CceeecCcEEEEEEEecCchHHHHHHHHHHHHHhcc---CCccceEEeccchHhhh
Confidence 6666777789999999986666554 4454444443 22223678999999764
No 350
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=3.7e-06 Score=67.08 Aligned_cols=116 Identities=17% Similarity=0.275 Sum_probs=68.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc---ccccc--cCCCCcceeeEEEEEEeeC--------CceEEEEeCCCCCCCCCCc
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRR---AFKSR--ASSSGVTSTCEMQRTVLKD--------GQVVNVIDTPGLFDFSAGS 86 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~---~~~~~--~~~~~~t~~~~~~~~~~~~--------~~~~~liDtPG~~~~~~~~ 86 (221)
..++++|+-.+|||||.++|.... .+... ....+.|..........+. .-+++++|+||...
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas----- 82 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS----- 82 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH-----
Confidence 889999999999999999985322 12111 1123334333333222211 23569999999642
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 87 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+. +.+.-...-.|..++|+|+......+..+.+ ..|.-..+..+||+||.|.+.
T Consensus 83 --LI----RtiiggaqiiDlm~lviDv~kG~QtQtAEcL-----iig~~~c~klvvvinkid~lp 136 (522)
T KOG0461|consen 83 --LI----RTIIGGAQIIDLMILVIDVQKGKQTQTAECL-----IIGELLCKKLVVVINKIDVLP 136 (522)
T ss_pred --HH----HHHHhhhheeeeeeEEEehhcccccccchhh-----hhhhhhccceEEEEecccccc
Confidence 22 2222233445899999999755544443332 122222346889999999886
No 351
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=3.3e-07 Score=65.82 Aligned_cols=122 Identities=14% Similarity=0.046 Sum_probs=73.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcc-cccc--cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRA-FKSR--ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~-~~~~--~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
.....|+++|.-.|||||++.++=-... .-.+ ++...+|......++.. ....+.+||.-|.. .+
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgGQe-----------~l 82 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGGQE-----------SL 82 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCChH-----------HH
Confidence 3447889999999999999976421110 0011 12233455556666666 67889999987743 22
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
++.+...+..+|+++||+|+.++-..++ ...++.+.+. -.--..|+++..||-|+..
T Consensus 83 rSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~-E~leg~p~L~lankqd~q~ 140 (197)
T KOG0076|consen 83 RSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVEN-EKLEGAPVLVLANKQDLQN 140 (197)
T ss_pred HHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHH-HHhcCCchhhhcchhhhhh
Confidence 2333344455699999999985433333 2233333221 1111237999999999875
No 352
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.50 E-value=6.3e-07 Score=75.17 Aligned_cols=122 Identities=22% Similarity=0.235 Sum_probs=63.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceee------------------EEEE----------E-EeeCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTC------------------EMQR----------T-VLKDG 68 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~-~~~~~~~~~~t~~~------------------~~~~----------~-~~~~~ 68 (221)
+..++|+|++|+||||++..|+.... ...+....-.+..+ .... . .. .+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~~ 299 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-RD 299 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-CC
Confidence 46899999999999999877654322 10000000000000 0000 0 11 34
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 027618 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (221)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D 148 (221)
..++||||||.... +.....++...+... ....-.++|++++... ......++.+ ..- ..--+++||.|
T Consensus 300 ~DlVlIDt~G~~~~---d~~~~~~L~~ll~~~-~~~~~~~LVl~a~~~~-~~l~~~~~~f----~~~--~~~~vI~TKlD 368 (424)
T PRK05703 300 CDVILIDTAGRSQR---DKRLIEELKALIEFS-GEPIDVYLVLSATTKY-EDLKDIYKHF----SRL--PLDGLIFTKLD 368 (424)
T ss_pred CCEEEEeCCCCCCC---CHHHHHHHHHHHhcc-CCCCeEEEEEECCCCH-HHHHHHHHHh----CCC--CCCEEEEeccc
Confidence 57899999998642 233344555554422 2235667777776221 1122333333 211 13469999999
Q ss_pred CCCC
Q 027618 149 ELED 152 (221)
Q Consensus 149 ~~~~ 152 (221)
....
T Consensus 369 et~~ 372 (424)
T PRK05703 369 ETSS 372 (424)
T ss_pred cccc
Confidence 8653
No 353
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.50 E-value=1.2e-06 Score=71.51 Aligned_cols=124 Identities=19% Similarity=0.142 Sum_probs=65.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccc--------cccCCCCc---------ceeeEEEEE-E----------e--e
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK--------SRASSSGV---------TSTCEMQRT-V----------L--K 66 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~--------~~~~~~~~---------t~~~~~~~~-~----------~--~ 66 (221)
.++..++++|++|+||||++..|+...... .+....+. ......... . . .
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 346889999999999999998876432100 00000000 000000000 0 0 0
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 027618 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG 146 (221)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk 146 (221)
.+..++||||||... .+.....++....... .++.+++|+++. ....+ ..+.+.. |.. ...--+|+||
T Consensus 284 ~~~D~VLIDTAGr~~---~d~~~l~EL~~l~~~~--~p~~~~LVLsag--~~~~d--~~~i~~~-f~~--l~i~glI~TK 351 (407)
T PRK12726 284 NCVDHILIDTVGRNY---LAEESVSEISAYTDVV--HPDLTCFTFSSG--MKSAD--VMTILPK-LAE--IPIDGFIITK 351 (407)
T ss_pred CCCCEEEEECCCCCc---cCHHHHHHHHHHhhcc--CCceEEEECCCc--ccHHH--HHHHHHh-cCc--CCCCEEEEEc
Confidence 245789999999864 2344455555544322 456767777653 22222 2233332 221 2246689999
Q ss_pred CCCCCC
Q 027618 147 GDELED 152 (221)
Q Consensus 147 ~D~~~~ 152 (221)
.|....
T Consensus 352 LDET~~ 357 (407)
T PRK12726 352 MDETTR 357 (407)
T ss_pred ccCCCC
Confidence 998753
No 354
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.50 E-value=1.7e-07 Score=72.60 Aligned_cols=76 Identities=17% Similarity=0.116 Sum_probs=33.3
Q ss_pred eEEEEeCCCCCCCCCCchHHHHHHHHHHHhhc-CCCcEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEec
Q 027618 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK-DGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTG 146 (221)
Q Consensus 70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk 146 (221)
.+.++||||..+. ..++..+...+.... ...-++++++|.....++... ..+-.+.-.+ ...-|.+.|+||
T Consensus 92 ~y~l~DtPGQiEl----f~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~--~~~lP~vnvlsK 165 (238)
T PF03029_consen 92 DYLLFDTPGQIEL----FTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML--RLELPHVNVLSK 165 (238)
T ss_dssp SEEEEE--SSHHH----HHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH--HHTSEEEEEE--
T ss_pred cEEEEeCCCCEEE----EEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh--hCCCCEEEeeec
Confidence 6899999997642 112222222222221 233477888888722333331 1111111111 123489999999
Q ss_pred CCCCC
Q 027618 147 GDELE 151 (221)
Q Consensus 147 ~D~~~ 151 (221)
+|...
T Consensus 166 ~Dl~~ 170 (238)
T PF03029_consen 166 IDLLS 170 (238)
T ss_dssp GGGS-
T ss_pred cCccc
Confidence 99987
No 355
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.48 E-value=1.3e-06 Score=70.24 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
.....|+++|++|+|||||++.+..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999765
No 356
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.47 E-value=1.2e-06 Score=65.07 Aligned_cols=29 Identities=31% Similarity=0.405 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFK 46 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~ 46 (221)
++..++++|++|+|||||++.|+|...+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEPD 53 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 44789999999999999999999986543
No 357
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=2.9e-08 Score=80.61 Aligned_cols=117 Identities=19% Similarity=0.223 Sum_probs=85.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc----------------ccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS----------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (221)
..+.|+++.+-.+||||.-.+|+-.....- .....+.|...-....+| ++.++.+|||||..+
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdw-kg~rinlidtpghvd 114 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDW-KGHRINLIDTPGHVD 114 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccc-ccceEeeecCCCcce
Confidence 357899999999999999888764432110 112347788888888899 999999999999999
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
|....+ + |++..|+++.|+|++.+...+....+++-.+ ...|.+..+||+|+..
T Consensus 115 f~leve-------r----clrvldgavav~dasagve~qtltvwrqadk-----~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 115 FRLEVE-------R----CLRVLDGAVAVFDASAGVEAQTLTVWRQADK-----FKIPAHCFINKMDKLA 168 (753)
T ss_pred EEEEHH-------H----HHHHhcCeEEEEeccCCcccceeeeehhccc-----cCCchhhhhhhhhhhh
Confidence 875544 4 4445599999999987777666444433322 3447888899999874
No 358
>PRK10867 signal recognition particle protein; Provisional
Probab=98.47 E-value=6e-06 Score=69.22 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=40.7
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (221)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~ 147 (221)
+..++++||||.... ++....++....... .++.+++|+++.. ........+.+.+. ....-+|+||.
T Consensus 183 ~~DvVIIDTaGrl~~---d~~lm~eL~~i~~~v--~p~evllVlda~~--gq~av~~a~~F~~~-----~~i~giIlTKl 250 (433)
T PRK10867 183 GYDVVIVDTAGRLHI---DEELMDELKAIKAAV--NPDEILLVVDAMT--GQDAVNTAKAFNEA-----LGLTGVILTKL 250 (433)
T ss_pred CCCEEEEeCCCCccc---CHHHHHHHHHHHHhh--CCCeEEEEEeccc--HHHHHHHHHHHHhh-----CCCCEEEEeCc
Confidence 356899999997642 344455554443322 4577899998752 12222333333322 12356888999
Q ss_pred CCC
Q 027618 148 DEL 150 (221)
Q Consensus 148 D~~ 150 (221)
|..
T Consensus 251 D~~ 253 (433)
T PRK10867 251 DGD 253 (433)
T ss_pred cCc
Confidence 954
No 359
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.47 E-value=8.4e-07 Score=70.46 Aligned_cols=91 Identities=22% Similarity=0.211 Sum_probs=64.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC----------------CceEEEEeCCCCCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLFD 81 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtPG~~~ 81 (221)
..+.+++||-+++||||++|+|+...... ...+.+|..+....+..+. .-.+.++|.+|+..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~--~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGA--ANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCc--cCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 44899999999999999999999887642 2344566666665544321 12488999999987
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCC
Q 027618 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (221)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (221)
..+..+-+...+.+.+ +++|+++-|+++.
T Consensus 97 GAs~G~GLGN~FLs~i----R~vDaifhVVr~f 125 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHI----RHVDAIFHVVRAF 125 (391)
T ss_pred CcccCcCchHHHHHhh----hhccceeEEEEec
Confidence 6555555666665554 4558998888753
No 360
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.47 E-value=7.9e-07 Score=75.17 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
.+..++|+|++|+||||++..|++..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHH
Confidence 34789999999999999999988654
No 361
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=2.2e-06 Score=68.18 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=81.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcc------cc--------cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRA------FK--------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~------~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (221)
..+...|+-+|+-..|||||-.+|+.... +. ......++|...-...++. ..+.+.-+|+||..|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeT-a~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYET-AKRHYAHTDCPGHAD 129 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeec-cccccccCCCCchHH
Confidence 35568899999999999999888753211 00 0112335555544444444 567788999999764
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+ . +-+..-..+-|+.|+|+.+.+..-++.++-+-..++. |.+ ++++.+||.|..+
T Consensus 130 Y-------I----KNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQV-GV~---~ivvfiNKvD~V~ 184 (449)
T KOG0460|consen 130 Y-------I----KNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQV-GVK---HIVVFINKVDLVD 184 (449)
T ss_pred H-------H----HHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHc-CCc---eEEEEEecccccC
Confidence 1 1 1111223445899999999999999988777655554 654 7999999999985
No 362
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.40 E-value=6.9e-06 Score=68.81 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=41.3
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (221)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~ 147 (221)
+..++++||||.... +.....++...... -.++.+++|+++.. ........+.+.+.. ...-+|+||.
T Consensus 182 ~~DvVIIDTaGr~~~---d~~l~~eL~~i~~~--~~p~e~lLVvda~t--gq~~~~~a~~f~~~v-----~i~giIlTKl 249 (428)
T TIGR00959 182 GFDVVIVDTAGRLQI---DEELMEELAAIKEI--LNPDEILLVVDAMT--GQDAVNTAKTFNERL-----GLTGVVLTKL 249 (428)
T ss_pred CCCEEEEeCCCcccc---CHHHHHHHHHHHHh--hCCceEEEEEeccc--hHHHHHHHHHHHhhC-----CCCEEEEeCc
Confidence 446899999997642 33445555444332 24678899999762 222233333333222 2356889999
Q ss_pred CCC
Q 027618 148 DEL 150 (221)
Q Consensus 148 D~~ 150 (221)
|..
T Consensus 250 D~~ 252 (428)
T TIGR00959 250 DGD 252 (428)
T ss_pred cCc
Confidence 954
No 363
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.39 E-value=3.8e-06 Score=71.46 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
..+..|+|+|++|+||||++..|..
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999988765
No 364
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=3.6e-06 Score=66.54 Aligned_cols=120 Identities=19% Similarity=0.262 Sum_probs=71.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCccee-------------------------eEEEEEEeeCCce
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTST-------------------------CEMQRTVLKDGQV 70 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~-~~~~~~~~t~~-------------------------~~~~~~~~~~~~~ 70 (221)
.+...|+++|+-..|||||..+|.|.-... +.....+.|.. |........--+.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 456899999999999999999999864311 00000111111 1100000012256
Q ss_pred EEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecCCC
Q 027618 71 VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (221)
Q Consensus 71 ~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~ 149 (221)
+.|+|.||+. -+...+. +-..--|+.++|+.+++++ .++.++-+-.| +..|.. +++++-||.|+
T Consensus 88 VSfVDaPGHe-------~LMATML----sGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIigik---~iiIvQNKIDl 152 (415)
T COG5257 88 VSFVDAPGHE-------TLMATML----SGAALMDGALLVIAANEPCPQPQTREHLMAL-EIIGIK---NIIIVQNKIDL 152 (415)
T ss_pred EEEeeCCchH-------HHHHHHh----cchhhhcceEEEEecCCCCCCCchHHHHHHH-hhhccc---eEEEEecccce
Confidence 8899999953 2222222 2223348999999998664 44445444444 344543 79999999999
Q ss_pred CC
Q 027618 150 LE 151 (221)
Q Consensus 150 ~~ 151 (221)
..
T Consensus 153 V~ 154 (415)
T COG5257 153 VS 154 (415)
T ss_pred ec
Confidence 86
No 365
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.37 E-value=2.2e-06 Score=70.85 Aligned_cols=123 Identities=20% Similarity=0.177 Sum_probs=65.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccc----------ccccCC---------------CCcceeeEEEE-------EEe
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAF----------KSRASS---------------SGVTSTCEMQR-------TVL 65 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~----------~~~~~~---------------~~~t~~~~~~~-------~~~ 65 (221)
.+..|+++|++|+||||++..|...... .....+ .+......... ...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3578999999999999999877642110 000000 01100000000 011
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEe
Q 027618 66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT 145 (221)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~t 145 (221)
.+..+++|||||.... +.....++...+....+ .+-.++|++++.... + ..+.+... .. ...--+++|
T Consensus 253 -~~~DlVLIDTaGr~~~---~~~~l~el~~~l~~~~~-~~e~~LVlsat~~~~--~--~~~~~~~~-~~--~~~~~~I~T 320 (388)
T PRK12723 253 -KDFDLVLVDTIGKSPK---DFMKLAEMKELLNACGR-DAEFHLAVSSTTKTS--D--VKEIFHQF-SP--FSYKTVIFT 320 (388)
T ss_pred -CCCCEEEEcCCCCCcc---CHHHHHHHHHHHHhcCC-CCeEEEEEcCCCCHH--H--HHHHHHHh-cC--CCCCEEEEE
Confidence 4567999999998742 22224455555443322 336788998874422 2 11233332 11 124569999
Q ss_pred cCCCCCC
Q 027618 146 GGDELED 152 (221)
Q Consensus 146 k~D~~~~ 152 (221)
|.|....
T Consensus 321 KlDet~~ 327 (388)
T PRK12723 321 KLDETTC 327 (388)
T ss_pred eccCCCc
Confidence 9998653
No 366
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.35 E-value=5.3e-06 Score=60.36 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 027618 21 TVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~ 42 (221)
.++++|..|+||||+++.++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 5789999999999999988765
No 367
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.35 E-value=5.6e-07 Score=69.43 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=20.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
++..+|++.|++|+|||||++.|..
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHH
Confidence 4558999999999999999999753
No 368
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.35 E-value=9.2e-06 Score=59.98 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFK 46 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~ 46 (221)
++..++++|++|+|||||++.|+|...+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~ 53 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKPD 53 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45789999999999999999999986543
No 369
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.33 E-value=2.3e-06 Score=67.34 Aligned_cols=69 Identities=28% Similarity=0.306 Sum_probs=46.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc----cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCch
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE 87 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~ 87 (221)
.+..+.++|-+|+|||||||++......... ....+.|....... .+.....++++||||...++....
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~i-ri~~rp~vy~iDTPGil~P~I~~~ 214 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERI-RISHRPPVYLIDTPGILVPSIVDV 214 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhhe-EeccCCceEEecCCCcCCCCCCCH
Confidence 4589999999999999999998655432221 12345555554422 222677899999999987654443
No 370
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.33 E-value=1.8e-05 Score=58.54 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=25.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccc
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK 46 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~ 46 (221)
.++..++++|++|+|||||++.|+|...+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 52 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPN 52 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCC
Confidence 456899999999999999999999986543
No 371
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.31 E-value=7.6e-07 Score=68.26 Aligned_cols=121 Identities=18% Similarity=0.182 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
-+++++|-+++||||++.-|+|..-. ..+....|..+......+ .+..+.+.|.||+.+...+.....+++....+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~--vasyefttl~~vpG~~~y-~gaKiqlldlpgiiegakdgkgrg~qviavar- 135 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSE--VAAYEFTTLTTVPGVIRY-KGAKIQLLDLPGIIEGAKDGKGRGKQVIAVAR- 135 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCc--cccccceeEEEecceEec-cccceeeecCcchhcccccCCCCccEEEEEee-
Confidence 48999999999999999999987642 233344455555555556 88999999999998754433333333333333
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccc-cccEEEEEecCCC
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKI-FDYMIVVFTGGDE 149 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ivv~tk~D~ 149 (221)
-++.+++|+|+-.+++ .++.++.-.+.||-.. ..|.-+.+.|-|+
T Consensus 136 ---tcnli~~vld~~kp~~--hk~~ie~eleg~girlnk~pp~i~~kkKdk 181 (358)
T KOG1487|consen 136 ---TCNLIFIVLDVLKPLS--HKKIIEKELEGFGIRLNKQPPNIGTKKKDK 181 (358)
T ss_pred ---cccEEEEEeeccCccc--HHHHHHHhhhcceeeccCCCCCcccccccc
Confidence 3378999999874543 4667777777777432 2244455555443
No 372
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.29 E-value=1e-05 Score=63.75 Aligned_cols=123 Identities=18% Similarity=0.154 Sum_probs=67.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccc---ccc-cCCCC---------cc----eeeEEEEEE-----------e--eC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAF---KSR-ASSSG---------VT----STCEMQRTV-----------L--KD 67 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~---~~~-~~~~~---------~t----~~~~~~~~~-----------~--~~ 67 (221)
+..+++++|++|+||||++..|++.... ... ....+ .+ ......... . ..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 4579999999999999999887654211 000 00000 00 000000000 0 02
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (221)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~ 147 (221)
+..++++||||.... +....+++.+.+... .++-+++|++++.. .......++.+.. ...--+++||.
T Consensus 154 ~~D~ViIDt~Gr~~~---~~~~l~el~~~~~~~--~~~~~~LVl~a~~~-~~d~~~~~~~f~~------~~~~~~I~TKl 221 (270)
T PRK06731 154 RVDYILIDTAGKNYR---ASETVEEMIETMGQV--EPDYICLTLSASMK-SKDMIEIITNFKD------IHIDGIVFTKF 221 (270)
T ss_pred CCCEEEEECCCCCcC---CHHHHHHHHHHHhhh--CCCeEEEEEcCccC-HHHHHHHHHHhCC------CCCCEEEEEee
Confidence 457899999998632 344555665554433 44678899987622 2222233333322 22466999999
Q ss_pred CCCCC
Q 027618 148 DELED 152 (221)
Q Consensus 148 D~~~~ 152 (221)
|....
T Consensus 222 Det~~ 226 (270)
T PRK06731 222 DETAS 226 (270)
T ss_pred cCCCC
Confidence 98753
No 373
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.28 E-value=6.2e-06 Score=60.89 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~ 56 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPTS 56 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 447899999999999999999999865443
No 374
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.28 E-value=7.1e-06 Score=70.50 Aligned_cols=43 Identities=28% Similarity=0.313 Sum_probs=31.9
Q ss_pred CCCCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
..+-++.++.-.. +-+|+|||++|+|||||++.|.|...+..+
T Consensus 16 ~~l~~~~~l~~~~--G~riGLvG~NGaGKSTLLkilaG~~~~~~G 58 (530)
T COG0488 16 RPLLENVSLTLNP--GERIGLVGRNGAGKSTLLKILAGELEPDSG 58 (530)
T ss_pred ceeecCCcceeCC--CCEEEEECCCCCCHHHHHHHHcCCCcCCCC
Confidence 3344444444333 489999999999999999999999865554
No 375
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.26 E-value=3e-06 Score=67.90 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=43.4
Q ss_pred CCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccC-CCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS-SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (221)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (221)
+.++.++.-..+ ..++++|++|||||||++.|+|...+..+.. ..+...... ...+ .....++.+.|.++.
T Consensus 20 ~l~~vs~~i~~G--ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~--~~~~-~~~igy~~~~~~~~~ 91 (293)
T COG1131 20 ALDGVSFEVEPG--EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE--PAKV-RRRIGYVPQEPSLYP 91 (293)
T ss_pred EEeceeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC--HHHH-HhheEEEccCCCCCc
Confidence 344444544443 7899999999999999999999876544310 011000000 0111 334678899998775
No 376
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.21 E-value=0.00011 Score=60.82 Aligned_cols=72 Identities=18% Similarity=0.116 Sum_probs=46.1
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (221)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~ 147 (221)
+..++++||.|-.. -++.+..++...-. .-.||-+|+|+|+..... .....+.+.+..+ -.-||+||.
T Consensus 182 ~~DvvIvDTAGRl~---ide~Lm~El~~Ik~--~~~P~E~llVvDam~GQd--A~~~A~aF~e~l~-----itGvIlTKl 249 (451)
T COG0541 182 GYDVVIVDTAGRLH---IDEELMDELKEIKE--VINPDETLLVVDAMIGQD--AVNTAKAFNEALG-----ITGVILTKL 249 (451)
T ss_pred CCCEEEEeCCCccc---ccHHHHHHHHHHHh--hcCCCeEEEEEecccchH--HHHHHHHHhhhcC-----CceEEEEcc
Confidence 34799999999874 35566777666533 346689999999763322 2334444444333 245899999
Q ss_pred CCCC
Q 027618 148 DELE 151 (221)
Q Consensus 148 D~~~ 151 (221)
|-..
T Consensus 250 DGda 253 (451)
T COG0541 250 DGDA 253 (451)
T ss_pred cCCC
Confidence 9653
No 377
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.18 E-value=1.1e-05 Score=59.49 Aligned_cols=30 Identities=30% Similarity=0.314 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~~ 56 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTS 56 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 347899999999999999999999865433
No 378
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.18 E-value=1.8e-05 Score=57.85 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~ 54 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDS 54 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 457899999999999999999999865433
No 379
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.17 E-value=8.9e-06 Score=65.71 Aligned_cols=30 Identities=37% Similarity=0.367 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
+..++++||+|||||||++.|.|...+.++
T Consensus 29 Gef~vllGPSGcGKSTlLr~IAGLe~~~~G 58 (338)
T COG3839 29 GEFVVLLGPSGCGKSTLLRMIAGLEEPTSG 58 (338)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 378899999999999999999999876554
No 380
>PRK01889 GTPase RsgA; Reviewed
Probab=98.17 E-value=2e-06 Score=70.66 Aligned_cols=59 Identities=34% Similarity=0.458 Sum_probs=37.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (221)
+.+++++|.+|+|||||+|.|+|...+..+.. ....|.......+ . ....++||||+..
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l---~-~~~~l~DtpG~~~ 259 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPL---P-SGGLLIDTPGMRE 259 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEe---c-CCCeecCCCchhh
Confidence 46899999999999999999998765443311 0112222222222 1 2246889999864
No 381
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.13 E-value=2.3e-06 Score=65.60 Aligned_cols=41 Identities=27% Similarity=0.302 Sum_probs=31.4
Q ss_pred CCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
+.+++++.-.. +..|+++|++|||||||+|.|.|...+..+
T Consensus 18 vl~~i~L~v~~--GEfvsilGpSGcGKSTLLriiAGL~~p~~G 58 (248)
T COG1116 18 VLEDINLSVEK--GEFVAILGPSGCGKSTLLRLIAGLEKPTSG 58 (248)
T ss_pred EeccceeEECC--CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 34444444443 378999999999999999999999876655
No 382
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.12 E-value=4e-05 Score=62.14 Aligned_cols=77 Identities=12% Similarity=0.150 Sum_probs=49.5
Q ss_pred EEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC--------CCHHHHHHHHHHHHHhcc
Q 027618 63 TVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR--------FSQEEEAALHSLQTLFGK 134 (221)
Q Consensus 63 ~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~--------~~~~~~~~~~~l~~~~~~ 134 (221)
..+ .+..+.++|++|... .+..+..++..+++++||++.++- ....-...+..+..++..
T Consensus 156 f~~-~~~~~~~~DvgGq~~-----------~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~ 223 (317)
T cd00066 156 FTI-KNLKFRMFDVGGQRS-----------ERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS 223 (317)
T ss_pred EEe-cceEEEEECCCCCcc-----------cchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC
Confidence 344 567788999999542 123334566788999999998731 112224444555555443
Q ss_pred c--ccccEEEEEecCCCCC
Q 027618 135 K--IFDYMIVVFTGGDELE 151 (221)
Q Consensus 135 ~--~~~~~ivv~tk~D~~~ 151 (221)
+ ...|+++++||.|...
T Consensus 224 ~~~~~~pill~~NK~D~f~ 242 (317)
T cd00066 224 RWFANTSIILFLNKKDLFE 242 (317)
T ss_pred ccccCCCEEEEccChHHHH
Confidence 2 2348999999999775
No 383
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.11 E-value=6.9e-07 Score=68.10 Aligned_cols=39 Identities=28% Similarity=0.345 Sum_probs=29.8
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 7 ~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
-+++++.-++ +...+++|++||||||+++.|+|..-+..
T Consensus 18 v~~isf~v~~--G~i~GllG~NGAGKTTtfRmILglle~~~ 56 (300)
T COG4152 18 VDNISFEVPP--GEIFGLLGPNGAGKTTTFRMILGLLEPTE 56 (300)
T ss_pred ecceeeeecC--CeEEEeecCCCCCccchHHHHhccCCccC
Confidence 3444554444 48899999999999999999999865433
No 384
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.11 E-value=1.2e-05 Score=64.23 Aligned_cols=125 Identities=19% Similarity=0.215 Sum_probs=70.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc-------------c--------cCCCCcceee-EEEE----EE-----
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS-------------R--------ASSSGVTSTC-EMQR----TV----- 64 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~-------------~--------~~~~~~t~~~-~~~~----~~----- 64 (221)
.+.+..|+++|-+|+||||.|-.|+....... + ....+...-. .... +-
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 34578999999999999999988764322100 0 0000000000 0000 00
Q ss_pred --eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhc----CCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccc
Q 027618 65 --LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK----DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFD 138 (221)
Q Consensus 65 --~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (221)
-.++..++++||.|-.. ....+..++.+..+.+- ..+|-+++|+|+..+.. ...-.+.+.+..+.
T Consensus 216 ~Akar~~DvvliDTAGRLh---nk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn--al~QAk~F~eav~l---- 286 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLH---NKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN--ALSQAKIFNEAVGL---- 286 (340)
T ss_pred HHHHcCCCEEEEeCccccc---CchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh--HHHHHHHHHHhcCC----
Confidence 01556799999999873 34556666666654332 24577999999873332 22233444444332
Q ss_pred cEEEEEecCCCC
Q 027618 139 YMIVVFTGGDEL 150 (221)
Q Consensus 139 ~~ivv~tk~D~~ 150 (221)
--+++||.|--
T Consensus 287 -~GiIlTKlDgt 297 (340)
T COG0552 287 -DGIILTKLDGT 297 (340)
T ss_pred -ceEEEEecccC
Confidence 45899999943
No 385
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.09 E-value=3.1e-06 Score=68.60 Aligned_cols=64 Identities=25% Similarity=0.332 Sum_probs=48.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (221)
-....+++++|-+++||||+||+|........+. ..|.|...+... -+..+.|+|.||+.-.+.
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~-~pGvT~smqeV~----Ldk~i~llDsPgiv~~~~ 312 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGN-VPGVTRSMQEVK----LDKKIRLLDSPGIVPPSI 312 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCC-Cccchhhhhhee----ccCCceeccCCceeecCC
Confidence 3556899999999999999999999888766653 345555554333 456788999999975443
No 386
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.09 E-value=3.9e-06 Score=62.80 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=36.4
Q ss_pred CCCCCCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 2 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
.|+.+.++.+++..++ ..++++||+|+|||||++.|+|...+..
T Consensus 12 ~Gr~ll~~vsl~~~pG--ev~ailGPNGAGKSTlLk~LsGel~p~~ 55 (259)
T COG4559 12 AGRRLLDGVSLDLRPG--EVLAILGPNGAGKSTLLKALSGELSPDS 55 (259)
T ss_pred ecceeccCcceeccCC--cEEEEECCCCccHHHHHHHhhCccCCCC
Confidence 4666777777777765 8899999999999999999999876544
No 387
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.09 E-value=0.00031 Score=51.72 Aligned_cols=73 Identities=21% Similarity=0.196 Sum_probs=42.3
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (221)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~ 147 (221)
+..++++||||.... ......++...... ..++.+++|+++... .........+.+..+ ...+|+||.
T Consensus 82 ~~d~viiDt~g~~~~---~~~~l~~l~~l~~~--~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-----~~~viltk~ 149 (173)
T cd03115 82 NFDVVIVDTAGRLQI---DENLMEELKKIKRV--VKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-----ITGVILTKL 149 (173)
T ss_pred CCCEEEEECcccchh---hHHHHHHHHHHHhh--cCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-----CCEEEEECC
Confidence 456889999997642 22334444333221 347899999998622 222233333333222 256888999
Q ss_pred CCCCC
Q 027618 148 DELED 152 (221)
Q Consensus 148 D~~~~ 152 (221)
|....
T Consensus 150 D~~~~ 154 (173)
T cd03115 150 DGDAR 154 (173)
T ss_pred cCCCC
Confidence 98764
No 388
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.07 E-value=3.2e-06 Score=65.71 Aligned_cols=43 Identities=30% Similarity=0.414 Sum_probs=33.2
Q ss_pred CCCCCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
+..+.+++++.-+.+ ..++++||+|||||||+++|+|...+..
T Consensus 14 ~~~il~~ls~~i~~G--~i~~iiGpNG~GKSTLLk~l~g~l~p~~ 56 (258)
T COG1120 14 GKPILDDLSFSIPKG--EITGILGPNGSGKSTLLKCLAGLLKPKS 56 (258)
T ss_pred CeeEEecceEEecCC--cEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence 344566666666653 7889999999999999999999766544
No 389
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.07 E-value=5.8e-05 Score=65.01 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
.++-+|+++|++|+|||||++.|+|...+..+
T Consensus 346 ~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G 377 (530)
T COG0488 346 DRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG 377 (530)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhcccCCc
Confidence 44589999999999999999999888766544
No 390
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.07 E-value=2.9e-05 Score=54.18 Aligned_cols=100 Identities=20% Similarity=0.220 Sum_probs=55.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhc
Q 027618 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK 101 (221)
Q Consensus 22 i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (221)
|++.|++|+|||++++.++.... ..+.-+|.+.+.+. ...+..+.+...+..+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~------------------------~~~~~i~~~~~~~~--~~~~~~~~i~~~~~~~~ 54 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG------------------------FPFIEIDGSELISS--YAGDSEQKIRDFFKKAK 54 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT------------------------SEEEEEETTHHHTS--STTHHHHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc------------------------cccccccccccccc--ccccccccccccccccc
Confidence 68899999999999999985431 12334555544421 12233444555544433
Q ss_pred CCC-cEEEEEEeCCCCCCHH--------HHHHHHHHHHHhccccc--ccEEEEEecCC
Q 027618 102 DGI-HAVLVVFSVRSRFSQE--------EEAALHSLQTLFGKKIF--DYMIVVFTGGD 148 (221)
Q Consensus 102 ~~~-~~il~v~~~~~~~~~~--------~~~~~~~l~~~~~~~~~--~~~ivv~tk~D 148 (221)
... ..++++-+++ .+... ....++.+...+..... .+++++++-.+
T Consensus 55 ~~~~~~vl~iDe~d-~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 55 KSAKPCVLFIDEID-KLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp HTSTSEEEEEETGG-GTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred ccccceeeeeccch-hcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 332 5777777766 33322 35555666555443322 24666665444
No 391
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.07 E-value=7.3e-05 Score=56.25 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
++..++++|++|+|||||++.|+|..
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44789999999999999999999986
No 392
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.06 E-value=4.2e-05 Score=56.95 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRPPAS 54 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 447899999999999999999999875443
No 393
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.06 E-value=2.1e-05 Score=56.52 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 027618 21 TVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~ 42 (221)
+|+++|++|+||||++..+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999887554
No 394
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=5.6e-05 Score=64.42 Aligned_cols=40 Identities=35% Similarity=0.350 Sum_probs=30.2
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 7 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 7 ~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
..+.+++-+. +..++++|++|+|||||++.|+|...+..+
T Consensus 337 l~~l~~t~~~--g~~talvG~SGaGKSTLl~lL~G~~~~~~G 376 (559)
T COG4988 337 LSDLNLTIKA--GQLTALVGASGAGKSTLLNLLLGFLAPTQG 376 (559)
T ss_pred cCCceeEecC--CcEEEEECCCCCCHHHHHHHHhCcCCCCCc
Confidence 3344444333 478999999999999999999999875443
No 395
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.04 E-value=4.9e-06 Score=60.86 Aligned_cols=32 Identities=31% Similarity=0.345 Sum_probs=27.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
..+.+++++|++|+|||||+|.|.|...|.++
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G 54 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFETPASG 54 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhccCCCCc
Confidence 34578999999999999999999999887654
No 396
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.02 E-value=0.00011 Score=55.59 Aligned_cols=24 Identities=29% Similarity=0.217 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
+.+++++|++|+||||++++|.+.
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHHH
Confidence 378999999999999999999843
No 397
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.02 E-value=6.4e-05 Score=59.19 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=21.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHh
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSIL 40 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~ 40 (221)
+++..+|++.|.+|+|||||+..|.
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~ 72 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALG 72 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHH
Confidence 3455899999999999999998874
No 398
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.02 E-value=1.2e-05 Score=69.76 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++.+++++|++|+|||||++.|+|...+..+
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G 390 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLDPLQG 390 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4588999999999999999999998765444
No 399
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=1.6e-05 Score=55.51 Aligned_cols=115 Identities=17% Similarity=0.095 Sum_probs=73.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
...++.++|--|+||||++-.+--.+ ....-+|.......+++ ++-++.++|.-|-.+ ++-.+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvge-----vvttkPtigfnve~v~y-KNLk~~vwdLggqtS-----------irPyW 79 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGE-----VVTTKPTIGFNVETVPY-KNLKFQVWDLGGQTS-----------IRPYW 79 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCc-----ccccCCCCCcCcccccc-ccccceeeEccCccc-----------ccHHH
Confidence 56889999999999999764432111 11222344445555666 778889999877543 22344
Q ss_pred HhhcCCCcEEEEEEeCCCC--CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSR--FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+.++...+++|||+|..++ .+.....+...|++---.. ..++++.||.|...
T Consensus 80 RcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~--a~llv~anKqD~~~ 133 (182)
T KOG0072|consen 80 RCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH--AKLLVFANKQDYSG 133 (182)
T ss_pred HHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcC--ceEEEEeccccchh
Confidence 4466778999999998744 4455566666665531111 25889999999764
No 400
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=5.8e-05 Score=54.74 Aligned_cols=27 Identities=37% Similarity=0.458 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~ 44 (221)
++..++++|++|+|||||++.|.|...
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 347889999999999999999998764
No 401
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.00 E-value=0.00015 Score=51.90 Aligned_cols=29 Identities=38% Similarity=0.410 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCccc
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAF 45 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~ 45 (221)
.++..++++|++|+|||||++.|+|...+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~ 52 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEP 52 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 34578899999999999999999998643
No 402
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=2.3e-05 Score=59.68 Aligned_cols=126 Identities=17% Similarity=0.139 Sum_probs=68.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
+-.++|++.|...+||||+-+-.....-|... -....|......++.. .-..+.+||.||..++-...-+.
T Consensus 25 ~~kp~ilLMG~rRsGKsSI~KVVFhkMsPneT-lflESTski~~d~is~-sfinf~v~dfPGQ~~~Fd~s~D~------- 95 (347)
T KOG3887|consen 25 GMKPRILLMGLRRSGKSSIQKVVFHKMSPNET-LFLESTSKITRDHISN-SFINFQVWDFPGQMDFFDPSFDY------- 95 (347)
T ss_pred CCCceEEEEeecccCcchhhheeeeccCCCce-eEeeccCcccHhhhhh-hhcceEEeecCCccccCCCccCH-------
Confidence 33467999999999999987665544322211 0001111111111111 22467899999987542221111
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
...++++.+++||+|+.+.+-..-......+..........++-|.+-|.|.+.+
T Consensus 96 -e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 96 -EMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred -HHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 1344667899999998743322222222223332222233356788999998863
No 403
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.99 E-value=7.1e-05 Score=54.87 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 55 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGS 55 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 457899999999999999999999865433
No 404
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.98 E-value=0.00031 Score=53.11 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSIL 40 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~ 40 (221)
.+++++|++|+|||||++.|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 679999999999999999987
No 405
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.97 E-value=0.00017 Score=54.11 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
++..++++|++|+|||||++.|+|..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999999864
No 406
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.96 E-value=9.1e-06 Score=61.02 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=31.1
Q ss_pred CCCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
.+..++++.-. ++..++++||+|+|||||+++|-+...+.++
T Consensus 16 ~VLkgi~l~v~--~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G 57 (240)
T COG1126 16 EVLKGISLSVE--KGEVVVIIGPSGSGKSTLLRCLNGLEEPDSG 57 (240)
T ss_pred EEecCcceeEc--CCCEEEEECCCCCCHHHHHHHHHCCcCCCCc
Confidence 33444444333 3488999999999999999999888766554
No 407
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.95 E-value=8.6e-05 Score=56.15 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
.++..++++|++|+|||||++.|+|..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345899999999999999999999973
No 408
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.94 E-value=4.8e-05 Score=56.42 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~ 56 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQ 56 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence 347899999999999999999999865433
No 409
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.94 E-value=6.3e-06 Score=66.89 Aligned_cols=65 Identities=22% Similarity=0.249 Sum_probs=46.3
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (221)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (221)
+......|+++|-+++||||+||.|-..++....+ ..+-|..-++.. --+++++||+||+.-.+.
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAP-IpGETKVWQYIt----LmkrIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAP-IPGETKVWQYIT----LMKRIFLIDCPGVVYPSS 367 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccC-CCCcchHHHHHH----HHhceeEecCCCccCCCC
Confidence 34556899999999999999999998887765543 334444333322 235788999999975543
No 410
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.93 E-value=2.2e-06 Score=65.34 Aligned_cols=31 Identities=32% Similarity=0.277 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++||+|+||||++|.|+|...+..+
T Consensus 29 ~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G 59 (250)
T COG0411 29 PGEIVGLIGPNGAGKTTLFNLITGFYKPSSG 59 (250)
T ss_pred CCeEEEEECCCCCCceeeeeeecccccCCCc
Confidence 3478999999999999999999998876544
No 411
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.93 E-value=9.2e-06 Score=57.42 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||+++|+|...+..
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~~~ 39 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLPPDS 39 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSHESE
T ss_pred CCCEEEEEccCCCccccceeeecccccccc
Confidence 347899999999999999999999876533
No 412
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.91 E-value=2.6e-05 Score=57.80 Aligned_cols=29 Identities=31% Similarity=0.341 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
+..|+++|++|||||||+|.+.|...+..
T Consensus 31 ge~vv~lGpSGcGKTTLLnl~AGf~~P~~ 59 (259)
T COG4525 31 GELVVVLGPSGCGKTTLLNLIAGFVTPSR 59 (259)
T ss_pred CCEEEEEcCCCccHHHHHHHHhcCcCccc
Confidence 46889999999999999999999876543
No 413
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.90 E-value=1.3e-05 Score=61.13 Aligned_cols=31 Identities=32% Similarity=0.329 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..|+++||+|||||||+|.|-+-..+.++
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G 60 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCc
Confidence 4478999999999999999999888766443
No 414
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.88 E-value=0.00042 Score=52.93 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=27.4
Q ss_pred CCCCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
..+++++.+.... .+++++.|++|+||||+++.+..
T Consensus 16 ~~vpnd~~l~~~~--~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 16 SFVPNDTEIGGGG--PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEcceEEecCCC--ceEEEEECCCCCChHHHHHHHHH
Confidence 4456776665432 37889999999999999999863
No 415
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.88 E-value=1.5e-05 Score=60.70 Aligned_cols=30 Identities=30% Similarity=0.307 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~ 55 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLGPTS 55 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 457899999999999999999999865433
No 416
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.88 E-value=1.7e-05 Score=60.59 Aligned_cols=43 Identities=28% Similarity=0.344 Sum_probs=32.1
Q ss_pred CCCCcccCCCC---CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 6 IDDDWELTSPS---NGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 6 ~~~~~~~~~~~---~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
....|.+..-+ .++.+|+++|++|||||||++.|.|...|..+
T Consensus 37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G 82 (249)
T COG1134 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG 82 (249)
T ss_pred cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCc
Confidence 34444444432 44589999999999999999999998776554
No 417
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.88 E-value=1.9e-06 Score=63.96 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
.+..++++|++|+||||+++.|...-.|..+
T Consensus 27 ~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G 57 (245)
T COG4555 27 EGEITGLLGENGAGKTTLLRMIATLLIPDSG 57 (245)
T ss_pred cceEEEEEcCCCCCchhHHHHHHHhccCCCc
Confidence 3478999999999999999999877665444
No 418
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.87 E-value=1.5e-05 Score=59.67 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
+..++++|++|+|||||++.|+|...+..
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~ 46 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLLRPQS 46 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 47899999999999999999999865433
No 419
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.87 E-value=1.5e-05 Score=61.78 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~ 54 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLRPDS 54 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 447899999999999999999999865443
No 420
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.87 E-value=1.5e-05 Score=61.72 Aligned_cols=41 Identities=29% Similarity=0.367 Sum_probs=29.9
Q ss_pred CCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
+.+++++.-+.+ ..++++||+|+|||||+++|+|.-.+..+
T Consensus 19 vl~~i~l~v~~G--~~~~iiGPNGaGKSTLlK~iLGll~p~~G 59 (254)
T COG1121 19 VLEDISLSVEKG--EITALIGPNGAGKSTLLKAILGLLKPSSG 59 (254)
T ss_pred eeeccEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence 344444433333 78899999999999999999996655444
No 421
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.86 E-value=3.1e-05 Score=59.14 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=39.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccC-CCCcc-eeeEEEEEEeeCCceEEEEeCCCCCCC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS-SSGVT-STCEMQRTVLKDGQVVNVIDTPGLFDF 82 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~-~~~~t-~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (221)
.++.+++++|++|+|||||.+.|+|...+..+.. ..+.. .........+ +..++++-|..+-..+
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~-~~VQmVFQDp~~SLnP 97 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY-RPVQMVFQDPYSSLNP 97 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc-cceeEEecCCccccCc
Confidence 3458999999999999999999999887655421 11101 1111011112 5567777776655543
No 422
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.85 E-value=1.7e-05 Score=60.58 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|+|||||++.|+|...+..+
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG 42 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLDAPDEG 42 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCCC
Confidence 3478999999999999999999998654443
No 423
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.85 E-value=1.8e-05 Score=60.68 Aligned_cols=30 Identities=33% Similarity=0.335 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~ 58 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTS 58 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcCCCc
Confidence 347899999999999999999999865433
No 424
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.84 E-value=1.8e-05 Score=60.05 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 54 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIKESS 54 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 447899999999999999999999865443
No 425
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.83 E-value=2e-05 Score=60.21 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFK 46 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~ 46 (221)
++..++++|++|+|||||++.|+|...+.
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~ 55 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALTPS 55 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34789999999999999999999986543
No 426
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.83 E-value=2e-05 Score=60.33 Aligned_cols=30 Identities=37% Similarity=0.410 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 57 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEKPTR 57 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 447899999999999999999999865433
No 427
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.83 E-value=2e-05 Score=60.14 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~ 54 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLERPDS 54 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 347899999999999999999999865433
No 428
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=97.83 E-value=0.00015 Score=57.15 Aligned_cols=67 Identities=28% Similarity=0.276 Sum_probs=44.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCc-ccccccCCCCcceeeEEEEEEe--eCCceEEEEeCCCCCCC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDF 82 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~ 82 (221)
..+...|.++|+..+|||.|+|.|++.. .+..+....+.|.-......+. .....+.++||.|+.+.
T Consensus 18 ~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~ 87 (260)
T PF02263_consen 18 DQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV 87 (260)
T ss_dssp TSBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred CCCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence 3455788999999999999999999753 3333333344444433333222 13457999999999884
No 429
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.82 E-value=2.1e-05 Score=60.32 Aligned_cols=30 Identities=23% Similarity=0.185 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~ 54 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLKPTS 54 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 347899999999999999999999765433
No 430
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.82 E-value=0.00011 Score=50.67 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 027618 21 TVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~ 43 (221)
+|+++|..|+|||+++.++....
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~ 24 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFP 24 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCC
Confidence 68999999999999999985443
No 431
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.81 E-value=2.2e-05 Score=59.61 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 52 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEKFDS 52 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 347899999999999999999999865433
No 432
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.81 E-value=7.2e-05 Score=56.88 Aligned_cols=45 Identities=24% Similarity=0.335 Sum_probs=28.8
Q ss_pred CCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618 102 DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (221)
Q Consensus 102 ~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (221)
..+|.++.|+|.+ .-+-...+.++.|.+-.| ..++.+|+||+|..
T Consensus 154 ~~vD~vivVvDpS-~~sl~taeri~~L~~elg---~k~i~~V~NKv~e~ 198 (255)
T COG3640 154 EGVDLVIVVVDPS-YKSLRTAERIKELAEELG---IKRIFVVLNKVDEE 198 (255)
T ss_pred cCCCEEEEEeCCc-HHHHHHHHHHHHHHHHhC---CceEEEEEeeccch
Confidence 4679999999987 222223333333433334 35799999999955
No 433
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.81 E-value=2.1e-05 Score=60.37 Aligned_cols=30 Identities=37% Similarity=0.339 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 58 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLERPTS 58 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 447899999999999999999999865433
No 434
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.81 E-value=0.00011 Score=64.58 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++.+++++|++|+|||||++.|+|.. +..+
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G 404 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL-PYQG 404 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC-CCCc
Confidence 45889999999999999999999987 5443
No 435
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.80 E-value=2.3e-05 Score=60.11 Aligned_cols=30 Identities=30% Similarity=0.331 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~ 59 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDNPTS 59 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 447899999999999999999999865433
No 436
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.80 E-value=2.4e-05 Score=59.66 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~ 54 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEEPDS 54 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 457899999999999999999999865433
No 437
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.79 E-value=2.5e-05 Score=58.80 Aligned_cols=30 Identities=27% Similarity=0.209 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~ 54 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQPSS 54 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 457899999999999999999999865443
No 438
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.79 E-value=2.4e-05 Score=59.70 Aligned_cols=30 Identities=33% Similarity=0.323 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~ 55 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEELPTS 55 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 447899999999999999999999865433
No 439
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.79 E-value=1.6e-05 Score=69.87 Aligned_cols=132 Identities=16% Similarity=0.134 Sum_probs=84.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCC--------------------------------------------
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-------------------------------------------- 52 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~-------------------------------------------- 52 (221)
-.-+.|+++|..++||||.++++.|..+.+.+....
T Consensus 27 i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e 106 (657)
T KOG0446|consen 27 IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE 106 (657)
T ss_pred ccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence 344789999999999999999999976543321110
Q ss_pred ---------CcceeeEEEEEEeeCCceEEEEeCCCCCCCC--CCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH
Q 027618 53 ---------GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS--AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE 121 (221)
Q Consensus 53 ---------~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~ 121 (221)
+....+..-.+..+.-..++++|.||+.... ...+++..++...+.......+.+++++... ......
T Consensus 107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~a-n~d~at 185 (657)
T KOG0446|consen 107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPA-NSDIAT 185 (657)
T ss_pred HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccch-hhhhhc
Confidence 0000011111222233468999999998643 3445688888888888888888888877654 222333
Q ss_pred HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 122 EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 122 ~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+++..++. . +.....+.|+||.|..+
T Consensus 186 s~alkiarev-D-p~g~RTigvitK~Dlmd 213 (657)
T KOG0446|consen 186 SPALVVAREV-D-PGGSRTLEVITKFDFMD 213 (657)
T ss_pred CHHHHHHHhh-C-CCccchhHHhhhHHhhh
Confidence 4566666664 2 22336889999999875
No 440
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.79 E-value=2.6e-05 Score=59.39 Aligned_cols=29 Identities=31% Similarity=0.313 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFK 46 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~ 46 (221)
++..++++|++|+|||||++.|+|...+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIILPD 53 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45789999999999999999999986443
No 441
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.79 E-value=2.5e-05 Score=61.35 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|+|||||++.|+|...+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 56 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQHG 56 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4578999999999999999999998654433
No 442
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.79 E-value=0.00022 Score=54.29 Aligned_cols=77 Identities=19% Similarity=0.183 Sum_probs=38.7
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCC--CCCHHH---HHHHHHHHHHhcccccccEEE
Q 027618 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS--RFSQEE---EAALHSLQTLFGKKIFDYMIV 142 (221)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~--~~~~~~---~~~~~~l~~~~~~~~~~~~iv 142 (221)
....+++|.||.-+.-......+.-++..-+. +.=+.+++..+ -++... ...+-.+..++.-. -|-+=
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~-----~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~me--lphVN 168 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKL-----DYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHME--LPHVN 168 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHc-----CceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhc--ccchh
Confidence 45789999999887544444443333333221 22233333221 122222 22222233333323 26778
Q ss_pred EEecCCCCC
Q 027618 143 VFTGGDELE 151 (221)
Q Consensus 143 v~tk~D~~~ 151 (221)
|++|+|.+.
T Consensus 169 vlSK~Dl~~ 177 (290)
T KOG1533|consen 169 VLSKADLLK 177 (290)
T ss_pred hhhHhHHHH
Confidence 899999875
No 443
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.78 E-value=2.5e-05 Score=59.57 Aligned_cols=30 Identities=33% Similarity=0.373 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~ 53 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLLKPTS 53 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCC
Confidence 457899999999999999999999865433
No 444
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.00016 Score=58.74 Aligned_cols=123 Identities=15% Similarity=0.138 Sum_probs=69.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcc-------------ccccc----CC-CCcceeeEEEEEEe------------
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRA-------------FKSRA----SS-SGVTSTCEMQRTVL------------ 65 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~-------------~~~~~----~~-~~~t~~~~~~~~~~------------ 65 (221)
...+-.|+++|-.|+||||.+-.+..... +..+. .. ...+..+.+..+..
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~ 177 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD 177 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence 45567899999999999999877654321 00000 00 00111111111100
Q ss_pred ---eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEE
Q 027618 66 ---KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV 142 (221)
Q Consensus 66 ---~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iv 142 (221)
..+..+.++||.|-.. .+.++.+++.++... -.+|.+|+|.|++-....+. ..+.+++..+ -.-+
T Consensus 178 ~fKke~fdvIIvDTSGRh~---qe~sLfeEM~~v~~a--i~Pd~vi~VmDasiGQaae~--Qa~aFk~~vd-----vg~v 245 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHK---QEASLFEEMKQVSKA--IKPDEIIFVMDASIGQAAEA--QARAFKETVD-----VGAV 245 (483)
T ss_pred HHHhcCCcEEEEeCCCchh---hhHHHHHHHHHHHhh--cCCCeEEEEEeccccHhHHH--HHHHHHHhhc-----cceE
Confidence 1344699999999873 345677777777543 45799999999984443333 2223333211 2446
Q ss_pred EEecCCCC
Q 027618 143 VFTGGDEL 150 (221)
Q Consensus 143 v~tk~D~~ 150 (221)
++||.|-.
T Consensus 246 IlTKlDGh 253 (483)
T KOG0780|consen 246 ILTKLDGH 253 (483)
T ss_pred EEEecccC
Confidence 77777754
No 445
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.78 E-value=2.6e-05 Score=59.78 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 56 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELRPTS 56 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 347899999999999999999999865443
No 446
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.78 E-value=2.7e-05 Score=46.82 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027618 20 RTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~ 41 (221)
...++.|++|+||||++.++.-
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999998753
No 447
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.78 E-value=2.7e-05 Score=60.26 Aligned_cols=30 Identities=33% Similarity=0.329 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 54 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVKPDS 54 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 447899999999999999999999865443
No 448
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.78 E-value=2.8e-05 Score=58.82 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|+|||||++.|+|...+..+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G 56 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLNPEKG 56 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 4589999999999999999999998654443
No 449
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.78 E-value=2.8e-05 Score=59.74 Aligned_cols=30 Identities=33% Similarity=0.495 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 54 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLPPRS 54 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 458899999999999999999999865433
No 450
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.78 E-value=2.7e-05 Score=60.25 Aligned_cols=30 Identities=30% Similarity=0.341 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~ 59 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLERPTS 59 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 457899999999999999999999875443
No 451
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.78 E-value=0.00015 Score=48.95 Aligned_cols=99 Identities=17% Similarity=0.086 Sum_probs=52.5
Q ss_pred cCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCc
Q 027618 26 GRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIH 105 (221)
Q Consensus 26 G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (221)
++.|+||||+.-.|........+. .......+...+..++++|||+.... .....+..+|
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~-------~~~l~d~d~~~~~D~IIiDtpp~~~~-------------~~~~~l~~aD 66 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGR-------RVLLVDLDLQFGDDYVVVDLGRSLDE-------------VSLAALDQAD 66 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCC-------cEEEEECCCCCCCCEEEEeCCCCcCH-------------HHHHHHHHcC
Confidence 669999999876654332111010 00011111112237889999987641 1112334458
Q ss_pred EEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEec
Q 027618 106 AVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTG 146 (221)
Q Consensus 106 ~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk 146 (221)
.++++++.+ ..+... ..+++.+++. +.+...++.+|+|+
T Consensus 67 ~vlvvv~~~-~~s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 67 RVFLVTQQD-LPSIRNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred eEEEEecCC-hHHHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 999999887 444333 5666666654 32212357777774
No 452
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.78 E-value=2.7e-05 Score=60.03 Aligned_cols=30 Identities=40% Similarity=0.494 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 59 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLLKPTS 59 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 447999999999999999999999865443
No 453
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.77 E-value=2.9e-05 Score=58.58 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLLRPDS 54 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 457899999999999999999999865433
No 454
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.77 E-value=2.7e-05 Score=60.66 Aligned_cols=30 Identities=27% Similarity=0.227 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~ 56 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLVEPSS 56 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCc
Confidence 347899999999999999999999865433
No 455
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.77 E-value=2.7e-05 Score=62.73 Aligned_cols=31 Identities=19% Similarity=0.148 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|+|||||++.|+|...+..+
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G 48 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG 48 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4478999999999999999999998655443
No 456
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.77 E-value=2.9e-05 Score=60.28 Aligned_cols=31 Identities=23% Similarity=0.190 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|+|||||++.|+|...+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G 56 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYVAQEG 56 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 4578999999999999999999998654443
No 457
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.76 E-value=2.7e-05 Score=59.39 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
.++++|++|+|||||++.|+|...+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 53 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSS 53 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 899999999999999999999765433
No 458
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.76 E-value=0.0001 Score=64.86 Aligned_cols=31 Identities=32% Similarity=0.501 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++.+++++|++|+|||||++.|+|...+..+
T Consensus 366 ~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G 396 (592)
T PRK10790 366 SRGFVALVGHTGSGKSTLASLLMGYYPLTEG 396 (592)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCc
Confidence 3478999999999999999999998766543
No 459
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.76 E-value=3.1e-05 Score=59.11 Aligned_cols=30 Identities=37% Similarity=0.413 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~ 54 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLEEPTS 54 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 457899999999999999999999865433
No 460
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.76 E-value=3e-05 Score=60.89 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=28.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
-.++..++++|++|+|||||++.|+|...+..+
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G 55 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLG 55 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 345689999999999999999999999765544
No 461
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.75 E-value=3.2e-05 Score=58.54 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSPPLA 54 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 458999999999999999999999865443
No 462
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.75 E-value=3e-05 Score=60.03 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFK 46 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~ 46 (221)
++..++++|++|+|||||++.|+|...+.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~ 62 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLDTPT 62 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34789999999999999999999986543
No 463
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.75 E-value=3.1e-05 Score=59.74 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~ 64 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDDGSS 64 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 457999999999999999999999865443
No 464
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.75 E-value=3.3e-05 Score=58.74 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 56 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLLPPAA 56 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 458899999999999999999999865433
No 465
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.75 E-value=3.2e-05 Score=60.43 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=26.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
.++..++++|++|+|||||++.|+|...+..+
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G 54 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVLKPDEG 54 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcCCCC
Confidence 35688999999999999999999998654443
No 466
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.75 E-value=3.1e-05 Score=60.19 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 56 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLERPDS 56 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 447899999999999999999999865433
No 467
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.75 E-value=2.7e-05 Score=57.57 Aligned_cols=24 Identities=38% Similarity=0.320 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
++.+++++|++|+|||||++.+++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 347899999999999999999874
No 468
>PRK10908 cell division protein FtsE; Provisional
Probab=97.74 E-value=3.3e-05 Score=59.34 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 56 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIERPSA 56 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 458899999999999999999999865433
No 469
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.74 E-value=3.3e-05 Score=59.65 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~ 54 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLLPVKS 54 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 458999999999999999999999875443
No 470
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.74 E-value=3.5e-05 Score=58.46 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~ 55 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLARPDA 55 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 447899999999999999999999865443
No 471
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.74 E-value=3.2e-05 Score=60.00 Aligned_cols=30 Identities=30% Similarity=0.222 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~ 54 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFLRPTS 54 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCCCC
Confidence 457899999999999999999999764433
No 472
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.00047 Score=57.33 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=26.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
..+|++|||+|+|||||+..|+|...+..+
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~G 642 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDG 642 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCCCCCcc
Confidence 358999999999999999999998776544
No 473
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.74 E-value=3.4e-05 Score=60.03 Aligned_cols=30 Identities=30% Similarity=0.311 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 55 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLVEPTS 55 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCC
Confidence 347899999999999999999999865433
No 474
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.73 E-value=3.8e-05 Score=57.06 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAF 45 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~ 45 (221)
++..++++|++|+|||||++.|+|...+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~ 51 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP 51 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4578999999999999999999997644
No 475
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.73 E-value=3.6e-05 Score=59.95 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|.|...+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~ 57 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIVPRDA 57 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 457899999999999999999999865443
No 476
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.73 E-value=3.6e-05 Score=59.34 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 61 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLISPTS 61 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCC
Confidence 347899999999999999999999765433
No 477
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.73 E-value=3.5e-05 Score=60.62 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~ 66 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLETPSA 66 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 347899999999999999999999865443
No 478
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.73 E-value=3.7e-05 Score=59.48 Aligned_cols=31 Identities=32% Similarity=0.332 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|+|||||++.|+|...+..+
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 40 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQPTSG 40 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3478999999999999999999998754433
No 479
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.72 E-value=3.2e-05 Score=59.62 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
++..++++|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45789999999999999999999986
No 480
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.72 E-value=3.6e-05 Score=59.94 Aligned_cols=30 Identities=30% Similarity=0.294 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 56 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLEMPRS 56 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 457899999999999999999999865433
No 481
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.72 E-value=3.4e-05 Score=63.13 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|+|||||++.|+|...+..+
T Consensus 66 ~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G 96 (340)
T PRK13536 66 SGECFGLLGPNGAGKSTIARMILGMTSPDAG 96 (340)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCce
Confidence 3488999999999999999999998765443
No 482
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.72 E-value=3.9e-05 Score=58.17 Aligned_cols=29 Identities=31% Similarity=0.477 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFK 46 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~ 46 (221)
.+..++++|++|+|||||+++|+|...+.
T Consensus 28 ~Geiv~llG~NGaGKTTlLkti~Gl~~~~ 56 (237)
T COG0410 28 RGEIVALLGRNGAGKTTLLKTIMGLVRPR 56 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 44789999999999999999999987643
No 483
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=3.8e-05 Score=58.53 Aligned_cols=31 Identities=32% Similarity=0.371 Sum_probs=26.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
.++..++++|++|+|||||++.|+|...+..
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~ 52 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFETPQS 52 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 3457899999999999999999999865433
No 484
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.72 E-value=3.9e-05 Score=58.77 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 59 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLEPDA 59 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCC
Confidence 347899999999999999999999865433
No 485
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.72 E-value=3.9e-05 Score=58.34 Aligned_cols=30 Identities=30% Similarity=0.315 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 54 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIKPDS 54 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCc
Confidence 457899999999999999999999865433
No 486
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.71 E-value=3.7e-05 Score=61.02 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 61 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFVRLAS 61 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 457899999999999999999999865443
No 487
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.71 E-value=3.8e-05 Score=60.88 Aligned_cols=31 Identities=26% Similarity=0.155 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|+|||||++.|+|...+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 56 (271)
T PRK13638 26 LSPVTGLVGANGCGKSTLFMNLSGLLRPQKG 56 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCcc
Confidence 3478999999999999999999998655443
No 488
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.71 E-value=3.7e-05 Score=61.96 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~ 58 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGMISPDR 58 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 347899999999999999999999865433
No 489
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.71 E-value=4e-05 Score=59.13 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|+|||||++.|+|...+..+
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 58 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 3478999999999999999999998754433
No 490
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.71 E-value=2.5e-05 Score=57.39 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
.+.-+++.||+|+||||++++|+...
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 45788999999999999999998776
No 491
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.71 E-value=3.1e-05 Score=60.21 Aligned_cols=30 Identities=30% Similarity=0.288 Sum_probs=26.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
+-+++++|++||||||+++.|+|...+.++
T Consensus 50 G~ivgflGaNGAGKSTtLKmLTGll~p~~G 79 (325)
T COG4586 50 GEIVGFLGANGAGKSTTLKMLTGLLLPTSG 79 (325)
T ss_pred CcEEEEEcCCCCcchhhHHHHhCccccCCC
Confidence 478999999999999999999999877655
No 492
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.70 E-value=4.2e-05 Score=58.48 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~ 65 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVES 65 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCC
Confidence 457899999999999999999999865443
No 493
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=4.2e-05 Score=59.59 Aligned_cols=30 Identities=30% Similarity=0.307 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 55 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLIEPTS 55 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 447899999999999999999999865433
No 494
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.70 E-value=4.1e-05 Score=60.03 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~ 58 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVAPDE 58 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 457899999999999999999999865433
No 495
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.70 E-value=4.3e-05 Score=59.51 Aligned_cols=30 Identities=27% Similarity=0.227 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 57 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLIDPTE 57 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 347899999999999999999999865433
No 496
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=4.3e-05 Score=59.15 Aligned_cols=31 Identities=39% Similarity=0.379 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|+|||||++.|+|...+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 57 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFYDVDSG 57 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccCCCC
Confidence 4578999999999999999999998755433
No 497
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=4.3e-05 Score=60.53 Aligned_cols=30 Identities=27% Similarity=0.232 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~ 78 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLIEPTS 78 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 457899999999999999999999865433
No 498
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.69 E-value=4.4e-05 Score=59.77 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFK 46 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~ 46 (221)
++..++++|++|+|||||++.|+|...+.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 56 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLEQPE 56 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 45789999999999999999999986543
No 499
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.69 E-value=0.00014 Score=54.40 Aligned_cols=91 Identities=19% Similarity=0.237 Sum_probs=49.5
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHH---HHHHHHHHhcccccccEEEEE
Q 027618 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA---ALHSLQTLFGKKIFDYMIVVF 144 (221)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~ivv~ 144 (221)
...+.++|+||..+--. +-.+...+.+.+....-.+ .++|+++.. -+....+. .+..+....... .|.|=|+
T Consensus 97 eddylifDcPGQIELyt-H~pVm~~iv~hl~~~~F~~-c~Vylldsq-f~vD~~KfiSG~lsAlsAMi~lE--~P~INvl 171 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYT-HLPVMPQIVEHLKQWNFNV-CVVYLLDSQ-FLVDSTKFISGCLSALSAMISLE--VPHINVL 171 (273)
T ss_pred cCCEEEEeCCCeeEEee-cChhHHHHHHHHhcccCce-eEEEEeccc-hhhhHHHHHHHHHHHHHHHHHhc--Ccchhhh
Confidence 44688999999876322 2234555555554422222 455666544 33333322 222233322222 3788899
Q ss_pred ecCCCCCCC-hhhHHHHhcc
Q 027618 145 TGGDELEDN-DETLEDYLGR 163 (221)
Q Consensus 145 tk~D~~~~~-~~~~~~~l~~ 163 (221)
+|+|++++. ...++.|+..
T Consensus 172 sKMDLlk~~~k~~l~~Fl~~ 191 (273)
T KOG1534|consen 172 SKMDLLKDKNKKELERFLNP 191 (273)
T ss_pred hHHHHhhhhhHHHHHHhcCC
Confidence 999999731 2567777763
No 500
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.69 E-value=4.1e-05 Score=61.79 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|||||||++.|+|...+..+
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G 62 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTHPDAG 62 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 3478999999999999999999998765443
Done!