Query 027618
Match_columns 221
No_of_seqs 199 out of 2291
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 21:30:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lxx_A GTPase IMAP family memb 99.9 2E-26 6.7E-31 178.2 18.2 186 15-205 25-236 (239)
2 3lxw_A GTPase IMAP family memb 99.9 2.3E-25 7.9E-30 172.9 19.0 196 16-216 18-241 (247)
3 2xtp_A GTPase IMAP family memb 99.9 1.4E-22 4.7E-27 158.4 20.6 136 14-151 17-153 (260)
4 3def_A T7I23.11 protein; chlor 99.9 1.7E-20 6E-25 146.7 16.7 143 17-163 34-177 (262)
5 1h65_A Chloroplast outer envel 99.8 4.1E-20 1.4E-24 145.2 16.6 142 17-162 37-179 (270)
6 1wf3_A GTP-binding protein; GT 99.8 2.2E-18 7.5E-23 137.1 17.2 125 19-151 7-131 (301)
7 2qu8_A Putative nucleolar GTP- 99.8 4.9E-18 1.7E-22 130.0 17.8 165 16-185 26-198 (228)
8 3iev_A GTP-binding protein ERA 99.8 1E-18 3.5E-23 139.6 14.5 129 14-150 5-135 (308)
9 4dhe_A Probable GTP-binding pr 99.8 2E-18 7E-23 131.4 14.7 131 16-151 26-158 (223)
10 3tw8_B RAS-related protein RAB 99.8 2.2E-18 7.5E-23 126.6 13.7 153 16-185 6-164 (181)
11 2lkc_A Translation initiation 99.8 5.6E-18 1.9E-22 124.2 15.5 127 17-162 6-132 (178)
12 2dyk_A GTP-binding protein; GT 99.8 2E-18 6.8E-23 124.5 12.3 153 20-184 2-154 (161)
13 2gf9_A RAS-related protein RAB 99.8 2.3E-18 7.7E-23 127.9 12.6 155 16-185 19-178 (189)
14 1svi_A GTP-binding protein YSX 99.8 2.4E-17 8.1E-22 122.8 16.7 127 16-151 20-148 (195)
15 2bcg_Y Protein YP2, GTP-bindin 99.8 9.1E-18 3.1E-22 126.3 13.7 153 17-185 6-164 (206)
16 2oil_A CATX-8, RAS-related pro 99.8 2.8E-18 9.5E-23 127.8 10.7 155 17-185 23-181 (193)
17 3tkl_A RAS-related protein RAB 99.8 4.3E-18 1.5E-22 126.8 11.4 153 17-185 14-172 (196)
18 1mky_A Probable GTP-binding pr 99.8 5.5E-18 1.9E-22 141.7 13.0 157 20-185 2-159 (439)
19 2gj8_A MNME, tRNA modification 99.8 1.1E-17 3.7E-22 122.6 13.1 157 18-185 3-159 (172)
20 3pqc_A Probable GTP-binding pr 99.8 4.4E-17 1.5E-21 121.1 16.5 126 16-151 20-147 (195)
21 2a5j_A RAS-related protein RAB 99.8 7.7E-18 2.6E-22 125.3 12.1 153 17-185 19-177 (191)
22 1z0f_A RAB14, member RAS oncog 99.8 3.5E-18 1.2E-22 125.3 10.1 154 16-184 12-170 (179)
23 3clv_A RAB5 protein, putative; 99.8 3.1E-17 1.1E-21 122.7 15.2 150 17-185 5-197 (208)
24 1z08_A RAS-related protein RAB 99.8 4.6E-18 1.6E-22 123.7 10.1 151 18-184 5-161 (170)
25 1g16_A RAS-related protein SEC 99.8 4.6E-18 1.6E-22 123.6 10.1 150 19-184 3-157 (170)
26 1z0j_A RAB-22, RAS-related pro 99.8 3.2E-18 1.1E-22 124.5 9.2 152 18-184 5-161 (170)
27 1zbd_A Rabphilin-3A; G protein 99.8 1.1E-17 3.7E-22 125.6 12.0 153 18-185 7-164 (203)
28 2efe_B Small GTP-binding prote 99.7 6.1E-18 2.1E-22 124.4 10.3 154 16-184 9-167 (181)
29 4dkx_A RAS-related protein RAB 99.7 3.9E-18 1.3E-22 129.5 9.4 153 18-185 12-169 (216)
30 3t5g_A GTP-binding protein RHE 99.7 2.2E-17 7.6E-22 121.5 13.2 152 18-185 5-162 (181)
31 3oes_A GTPase rhebl1; small GT 99.7 1.2E-17 4.1E-22 125.2 11.9 157 15-185 20-180 (201)
32 2bme_A RAB4A, RAS-related prot 99.7 9.4E-18 3.2E-22 124.0 11.1 153 17-185 8-166 (186)
33 3cph_A RAS-related protein SEC 99.7 3E-17 1E-21 123.9 13.8 154 16-185 17-175 (213)
34 2fu5_C RAS-related protein RAB 99.7 1.1E-17 3.6E-22 123.5 10.9 153 17-185 6-164 (183)
35 2fg5_A RAB-22B, RAS-related pr 99.7 8.1E-18 2.8E-22 125.3 10.2 155 17-185 21-179 (192)
36 1r2q_A RAS-related protein RAB 99.7 4E-18 1.4E-22 123.9 8.1 152 18-184 5-161 (170)
37 1ek0_A Protein (GTP-binding pr 99.7 4E-18 1.4E-22 123.9 8.1 117 19-151 3-122 (170)
38 1vg8_A RAS-related protein RAB 99.7 3.6E-17 1.2E-21 122.9 13.4 156 16-185 5-168 (207)
39 3bc1_A RAS-related protein RAB 99.7 1.7E-17 5.7E-22 123.2 11.3 154 17-185 9-178 (195)
40 2il1_A RAB12; G-protein, GDP, 99.7 3.5E-18 1.2E-22 127.4 7.4 157 13-185 20-183 (192)
41 4bas_A ADP-ribosylation factor 99.7 6.6E-17 2.3E-21 120.6 14.2 123 14-151 12-141 (199)
42 2fn4_A P23, RAS-related protei 99.7 1.6E-17 5.6E-22 121.9 10.4 156 14-185 4-165 (181)
43 1ky3_A GTP-binding protein YPT 99.7 2.5E-17 8.7E-22 121.0 11.4 157 16-185 5-171 (182)
44 1wms_A RAB-9, RAB9, RAS-relate 99.7 2.6E-17 8.8E-22 120.6 11.4 155 17-185 5-167 (177)
45 1z2a_A RAS-related protein RAB 99.7 1.2E-17 4.2E-22 121.1 9.4 149 18-183 4-158 (168)
46 3q72_A GTP-binding protein RAD 99.7 4.2E-17 1.4E-21 118.2 12.1 152 19-185 2-157 (166)
47 2q3h_A RAS homolog gene family 99.7 5.1E-17 1.8E-21 121.6 12.8 120 14-151 15-138 (201)
48 2yc2_C IFT27, small RAB-relate 99.7 2.1E-17 7E-22 124.2 10.3 156 17-185 18-185 (208)
49 3kkq_A RAS-related protein M-R 99.7 1.7E-17 6E-22 122.3 9.8 156 13-184 12-174 (183)
50 3dz8_A RAS-related protein RAB 99.7 8.2E-18 2.8E-22 125.1 7.8 155 17-185 21-179 (191)
51 2g6b_A RAS-related protein RAB 99.7 6.9E-17 2.4E-21 118.6 12.6 153 17-184 8-166 (180)
52 2nzj_A GTP-binding protein REM 99.7 9.8E-17 3.4E-21 117.2 13.3 154 18-185 3-162 (175)
53 4dsu_A GTPase KRAS, isoform 2B 99.7 6.9E-17 2.3E-21 119.4 12.5 152 18-185 3-159 (189)
54 2p5s_A RAS and EF-hand domain 99.7 7.4E-18 2.5E-22 126.2 7.2 119 16-150 25-146 (199)
55 1x3s_A RAS-related protein RAB 99.7 1.8E-17 6.2E-22 123.3 9.2 154 18-185 14-171 (195)
56 2o52_A RAS-related protein RAB 99.7 2.4E-17 8.4E-22 123.6 9.7 153 17-185 23-181 (200)
57 3t5d_A Septin-7; GTP-binding p 99.7 1.3E-16 4.3E-21 125.5 14.2 127 18-151 7-158 (274)
58 1upt_A ARL1, ADP-ribosylation 99.7 1.7E-16 5.9E-21 115.4 14.0 116 18-151 6-122 (171)
59 2ew1_A RAS-related protein RAB 99.7 2.5E-17 8.4E-22 123.8 9.7 153 17-185 24-182 (201)
60 1z06_A RAS-related protein RAB 99.7 2.8E-17 9.7E-22 121.9 9.8 155 16-185 17-181 (189)
61 4dcu_A GTP-binding protein ENG 99.7 5.5E-18 1.9E-22 142.3 6.5 125 17-151 21-145 (456)
62 3t1o_A Gliding protein MGLA; G 99.7 2.2E-16 7.6E-21 117.4 14.5 158 17-185 12-185 (198)
63 2e87_A Hypothetical protein PH 99.7 1.9E-15 6.7E-20 123.0 21.2 159 17-185 165-329 (357)
64 4djt_A GTP-binding nuclear pro 99.7 2.4E-17 8.2E-22 125.1 9.2 153 17-184 9-167 (218)
65 2hxs_A RAB-26, RAS-related pro 99.7 5.9E-17 2E-21 118.8 11.1 154 17-184 4-165 (178)
66 3i8s_A Ferrous iron transport 99.7 6E-17 2.1E-21 127.3 11.3 122 19-151 3-126 (274)
67 3llu_A RAS-related GTP-binding 99.7 6.7E-17 2.3E-21 120.7 11.1 129 14-151 15-143 (196)
68 2erx_A GTP-binding protein DI- 99.7 3.1E-17 1.1E-21 119.4 8.9 119 19-151 3-123 (172)
69 2h57_A ADP-ribosylation factor 99.7 1.1E-16 3.9E-21 118.8 12.1 154 16-184 18-179 (190)
70 2y8e_A RAB-protein 6, GH09086P 99.7 1.4E-17 4.9E-22 122.0 7.0 118 18-151 13-133 (179)
71 1kao_A RAP2A; GTP-binding prot 99.7 8.2E-17 2.8E-21 116.4 10.8 150 19-184 3-158 (167)
72 1u8z_A RAS-related protein RAL 99.7 5.4E-17 1.8E-21 117.5 9.8 151 18-184 3-159 (168)
73 2bov_A RAla, RAS-related prote 99.7 9.6E-17 3.3E-21 120.4 11.4 154 16-185 11-170 (206)
74 2hup_A RAS-related protein RAB 99.7 5.3E-17 1.8E-21 121.9 9.9 153 17-185 27-186 (201)
75 2hjg_A GTP-binding protein ENG 99.7 1.1E-17 3.8E-22 139.7 6.8 155 20-185 4-158 (436)
76 3q3j_B RHO-related GTP-binding 99.7 1.2E-16 4E-21 121.2 11.8 119 16-151 24-145 (214)
77 3gee_A MNME, tRNA modification 99.7 8E-17 2.7E-21 135.3 11.8 125 19-152 233-358 (476)
78 3cpj_B GTP-binding protein YPT 99.7 7.7E-17 2.6E-21 122.9 10.4 152 17-184 11-168 (223)
79 2a9k_A RAS-related protein RAL 99.7 1.3E-16 4.4E-21 117.7 11.3 153 17-185 16-174 (187)
80 1m2o_B GTP-binding protein SAR 99.7 3.6E-16 1.2E-20 116.3 13.6 128 17-162 21-150 (190)
81 3q85_A GTP-binding protein REM 99.7 6.2E-17 2.1E-21 117.6 9.3 152 20-185 3-160 (169)
82 2iwr_A Centaurin gamma 1; ANK 99.7 1.6E-16 5.6E-21 116.5 11.4 148 17-185 5-162 (178)
83 3a1s_A Iron(II) transport prot 99.7 5E-16 1.7E-20 121.0 14.5 120 19-151 5-124 (258)
84 2gf0_A GTP-binding protein DI- 99.7 8.6E-17 2.9E-21 120.0 9.8 154 17-185 6-164 (199)
85 3reg_A RHO-like small GTPase; 99.7 1.2E-16 4E-21 119.1 10.3 152 16-185 20-181 (194)
86 3l0i_B RAS-related protein RAB 99.7 4.6E-18 1.6E-22 127.3 2.7 153 17-185 31-189 (199)
87 1r8s_A ADP-ribosylation factor 99.7 2E-16 7E-21 114.3 11.1 114 20-151 1-115 (164)
88 4dcu_A GTP-binding protein ENG 99.7 1E-16 3.5E-21 134.6 10.9 130 16-152 192-321 (456)
89 2h17_A ADP-ribosylation factor 99.7 2.5E-16 8.4E-21 116.1 11.7 151 16-184 18-175 (181)
90 1moz_A ARL1, ADP-ribosylation 99.7 3.8E-16 1.3E-20 115.0 12.6 151 17-185 16-173 (183)
91 1ksh_A ARF-like protein 2; sma 99.7 3.8E-16 1.3E-20 115.4 12.7 117 17-151 16-133 (186)
92 2x77_A ADP-ribosylation factor 99.7 5.4E-16 1.8E-20 114.9 13.5 117 17-151 20-137 (189)
93 2f7s_A C25KG, RAS-related prot 99.7 9.6E-17 3.3E-21 121.6 9.6 153 18-185 24-192 (217)
94 3c5c_A RAS-like protein 12; GD 99.7 1.9E-16 6.7E-21 117.4 10.9 154 16-185 18-179 (187)
95 2ce2_X GTPase HRAS; signaling 99.7 4.9E-16 1.7E-20 112.1 12.7 150 19-184 3-157 (166)
96 2b6h_A ADP-ribosylation factor 99.7 2.5E-16 8.5E-21 117.3 11.1 117 17-151 27-144 (192)
97 3cbq_A GTP-binding protein REM 99.7 2E-16 6.8E-21 118.2 10.6 159 13-185 17-181 (195)
98 2hjg_A GTP-binding protein ENG 99.7 1E-16 3.6E-21 133.8 10.0 129 17-152 173-301 (436)
99 1c1y_A RAS-related protein RAP 99.7 1.4E-16 4.7E-21 115.4 9.4 151 19-184 3-159 (167)
100 3iby_A Ferrous iron transport 99.7 5.9E-16 2E-20 120.4 13.5 121 20-151 2-124 (256)
101 2wji_A Ferrous iron transport 99.7 4.2E-16 1.4E-20 113.2 11.8 154 19-185 3-158 (165)
102 3con_A GTPase NRAS; structural 99.7 9.1E-16 3.1E-20 113.7 13.9 153 17-185 19-176 (190)
103 2wjg_A FEOB, ferrous iron tran 99.7 5.7E-16 1.9E-20 114.6 12.6 155 18-185 6-162 (188)
104 3gj0_A GTP-binding nuclear pro 99.7 3.7E-17 1.3E-21 124.3 5.9 122 15-151 11-133 (221)
105 1m7b_A RND3/RHOE small GTP-bin 99.7 2.6E-16 9E-21 116.2 10.2 118 17-151 5-125 (184)
106 3ihw_A Centg3; RAS, centaurin, 99.7 2.3E-16 7.7E-21 116.8 9.8 149 15-185 16-173 (184)
107 1gwn_A RHO-related GTP-binding 99.7 3.7E-16 1.3E-20 117.7 10.9 118 16-151 25-146 (205)
108 2atx_A Small GTP binding prote 99.7 5.8E-16 2E-20 115.2 11.6 116 18-151 17-136 (194)
109 1ega_A Protein (GTP-binding pr 99.7 4.1E-16 1.4E-20 124.1 11.3 122 19-151 8-130 (301)
110 1zj6_A ADP-ribosylation factor 99.7 1.2E-15 4.1E-20 112.9 13.0 151 17-185 14-171 (187)
111 1mh1_A RAC1; GTP-binding, GTPa 99.7 2.7E-16 9.1E-21 116.0 9.3 116 18-151 4-123 (186)
112 4gzl_A RAS-related C3 botulinu 99.7 4.6E-16 1.6E-20 117.0 10.7 118 16-151 27-148 (204)
113 3k53_A Ferrous iron transport 99.7 1.6E-15 5.6E-20 119.0 14.1 120 19-150 3-122 (271)
114 1xzp_A Probable tRNA modificat 99.7 5.9E-16 2E-20 130.2 12.3 120 19-151 243-364 (482)
115 1f6b_A SAR1; gtpases, N-termin 99.7 8.3E-16 2.8E-20 115.0 11.8 128 17-162 23-152 (198)
116 2gco_A H9, RHO-related GTP-bin 99.7 7.1E-16 2.4E-20 115.6 11.2 117 17-151 23-143 (201)
117 1zd9_A ADP-ribosylation factor 99.7 1.9E-15 6.5E-20 112.0 13.4 118 17-151 20-138 (188)
118 2j0v_A RAC-like GTP-binding pr 99.7 3.6E-16 1.2E-20 118.0 9.5 117 17-151 7-127 (212)
119 3r7w_A Gtpase1, GTP-binding pr 99.7 9E-16 3.1E-20 122.5 12.2 126 19-151 3-129 (307)
120 2j1l_A RHO-related GTP-binding 99.7 7.2E-16 2.5E-20 116.7 11.1 116 18-151 33-152 (214)
121 2atv_A RERG, RAS-like estrogen 99.7 8.1E-16 2.8E-20 114.7 10.7 153 16-185 25-184 (196)
122 2fv8_A H6, RHO-related GTP-bin 99.6 6.6E-16 2.3E-20 116.3 10.1 116 18-151 24-143 (207)
123 1fzq_A ADP-ribosylation factor 99.6 2.9E-15 9.9E-20 110.4 13.3 151 17-185 14-171 (181)
124 3bwd_D RAC-like GTP-binding pr 99.6 2.6E-16 9E-21 115.7 7.6 118 17-151 6-126 (182)
125 2fh5_B SR-beta, signal recogni 99.6 3.3E-15 1.1E-19 112.9 13.5 118 17-151 5-129 (214)
126 3qq5_A Small GTP-binding prote 99.6 1.7E-16 5.8E-21 131.3 6.6 127 16-154 31-157 (423)
127 3geh_A MNME, tRNA modification 99.6 2.9E-16 9.9E-21 131.5 8.0 121 19-151 224-344 (462)
128 3o47_A ADP-ribosylation factor 99.6 2.3E-15 7.8E-20 121.3 12.3 150 18-185 164-320 (329)
129 2ged_A SR-beta, signal recogni 99.6 1.2E-15 4.1E-20 113.3 10.0 121 17-151 46-170 (193)
130 3t34_A Dynamin-related protein 99.6 4.2E-15 1.4E-19 121.2 13.9 132 18-152 33-218 (360)
131 1lnz_A SPO0B-associated GTP-bi 99.6 4.5E-16 1.5E-20 125.6 7.8 125 21-151 160-288 (342)
132 1jwy_B Dynamin A GTPase domain 99.6 2E-15 6.9E-20 120.8 11.0 130 17-151 22-212 (315)
133 2cxx_A Probable GTP-binding pr 99.6 1.8E-15 6E-20 112.0 9.9 134 20-162 2-147 (190)
134 1mky_A Probable GTP-binding pr 99.6 2.3E-15 7.8E-20 125.8 11.2 127 18-151 179-306 (439)
135 3tr5_A RF-3, peptide chain rel 99.6 4.9E-15 1.7E-19 126.0 11.6 120 17-153 11-150 (528)
136 2aka_B Dynamin-1; fusion prote 99.6 1.7E-14 5.9E-19 114.4 14.1 130 17-151 24-206 (299)
137 4a9a_A Ribosome-interacting GT 99.6 6.7E-15 2.3E-19 119.7 11.6 122 20-150 73-195 (376)
138 3lvq_E ARF-GAP with SH3 domain 99.6 7.9E-15 2.7E-19 124.4 12.2 151 17-185 320-477 (497)
139 3b1v_A Ferrous iron uptake tra 99.6 1.2E-14 4E-19 114.0 12.2 118 19-150 3-120 (272)
140 2g3y_A GTP-binding protein GEM 99.6 3.6E-14 1.2E-18 107.2 14.1 154 18-185 36-196 (211)
141 2cjw_A GTP-binding protein GEM 99.6 1.7E-14 5.7E-19 107.4 11.7 154 18-185 5-165 (192)
142 1nrj_B SR-beta, signal recogni 99.6 1.5E-14 5.1E-19 109.6 11.3 122 16-151 9-134 (218)
143 2qpt_A EH domain-containing pr 99.6 4.4E-15 1.5E-19 127.0 9.3 127 17-151 63-232 (550)
144 1zun_B Sulfate adenylate trans 99.6 4.3E-14 1.5E-18 117.9 14.0 119 17-151 22-171 (434)
145 2f9l_A RAB11B, member RAS onco 99.6 4.9E-14 1.7E-18 105.3 12.8 117 19-151 5-124 (199)
146 3p26_A Elongation factor 1 alp 99.6 1.8E-14 6.3E-19 121.7 11.6 119 17-151 31-185 (483)
147 2qtf_A Protein HFLX, GTP-bindi 99.6 4.5E-14 1.5E-18 115.0 13.3 124 20-151 180-306 (364)
148 2xex_A Elongation factor G; GT 99.6 3.1E-14 1.1E-18 124.9 12.8 121 16-153 7-143 (693)
149 3vqt_A RF-3, peptide chain rel 99.6 2.5E-14 8.6E-19 122.2 11.8 121 17-154 29-169 (548)
150 2h5e_A Peptide chain release f 99.6 5.1E-14 1.7E-18 119.9 13.5 120 17-153 11-150 (529)
151 1s0u_A EIF-2-gamma, translatio 99.6 3.9E-13 1.3E-17 111.3 18.4 153 17-184 6-190 (408)
152 1g7s_A Translation initiation 99.5 3.7E-14 1.3E-18 122.0 12.5 116 18-151 4-136 (594)
153 3th5_A RAS-related C3 botulinu 99.3 4E-16 1.4E-20 117.1 0.0 118 17-151 28-148 (204)
154 2qag_A Septin-2, protein NEDD5 99.5 1.4E-13 4.9E-18 112.0 14.8 127 19-151 37-188 (361)
155 1pui_A ENGB, probable GTP-bind 99.5 1.1E-13 3.7E-18 104.1 13.1 126 17-151 24-151 (210)
156 3j2k_7 ERF3, eukaryotic polype 99.5 8.7E-14 3E-18 116.1 13.7 121 15-151 13-169 (439)
157 3izy_P Translation initiation 99.5 1.1E-15 3.9E-20 129.6 2.4 116 18-151 3-118 (537)
158 2zej_A Dardarin, leucine-rich 99.5 2.2E-14 7.6E-19 105.9 8.8 119 19-151 2-126 (184)
159 1dar_A EF-G, elongation factor 99.5 4.8E-14 1.6E-18 123.7 12.2 123 14-153 7-145 (691)
160 1zo1_I IF2, translation initia 99.5 5.2E-15 1.8E-19 124.6 5.6 115 18-151 3-117 (501)
161 1wb1_A Translation elongation 99.5 1.5E-13 5E-18 116.0 14.3 117 18-151 18-139 (482)
162 3zvr_A Dynamin-1; hydrolase, D 99.5 1.5E-13 5.3E-18 120.3 14.8 130 18-152 50-232 (772)
163 2x2e_A Dynamin-1; nitration, h 99.5 1.5E-13 5.2E-18 111.7 13.5 130 18-151 30-211 (353)
164 2c78_A Elongation factor TU-A; 99.5 2.8E-14 9.7E-19 118.0 9.0 120 16-151 8-142 (405)
165 3izq_1 HBS1P, elongation facto 99.5 9.1E-14 3.1E-18 120.2 12.4 120 16-151 164-319 (611)
166 1kk1_A EIF2gamma; initiation o 99.5 2.6E-13 9E-18 112.4 14.5 120 17-151 8-151 (410)
167 3sjy_A Translation initiation 99.5 8.8E-14 3E-18 115.0 11.4 119 17-151 6-143 (403)
168 2wkq_A NPH1-1, RAS-related C3 99.5 1.1E-13 3.9E-18 111.1 11.7 116 18-151 154-273 (332)
169 2j69_A Bacterial dynamin-like 99.5 7.4E-14 2.5E-18 122.5 10.9 121 18-151 68-244 (695)
170 1d2e_A Elongation factor TU (E 99.5 2.4E-13 8.1E-18 112.2 13.0 118 18-151 2-133 (397)
171 2rdo_7 EF-G, elongation factor 99.5 3.7E-13 1.3E-17 118.2 14.7 121 16-153 7-150 (704)
172 2ywe_A GTP-binding protein LEP 99.5 7.9E-14 2.7E-18 119.8 10.1 120 18-153 5-141 (600)
173 3dpu_A RAB family protein; roc 99.5 8.3E-14 2.8E-18 119.2 9.9 119 17-151 39-164 (535)
174 1jny_A EF-1-alpha, elongation 99.5 1.1E-13 3.9E-18 115.4 10.2 119 17-151 4-158 (435)
175 3cb4_D GTP-binding protein LEP 99.5 8.4E-14 2.9E-18 119.8 9.1 120 18-153 3-139 (599)
176 1oix_A RAS-related protein RAB 99.5 5E-13 1.7E-17 99.3 12.0 117 19-151 29-148 (191)
177 1f60_A Elongation factor EEF1A 99.5 8.6E-14 3E-18 116.7 8.2 118 18-151 6-159 (458)
178 3r7w_B Gtpase2, GTP-binding pr 99.5 3.3E-13 1.1E-17 107.5 11.0 120 21-151 1-120 (331)
179 2elf_A Protein translation elo 99.5 2.5E-13 8.4E-18 110.9 10.1 102 21-149 23-125 (370)
180 3mca_A HBS1, elongation factor 99.4 2.2E-14 7.5E-19 123.7 2.1 120 16-151 174-329 (592)
181 1udx_A The GTP-binding protein 99.4 1.8E-12 6.1E-17 107.0 13.1 125 20-151 158-283 (416)
182 2qag_C Septin-7; cell cycle, c 99.4 2.9E-12 9.8E-17 105.9 14.1 128 17-151 29-181 (418)
183 1wxq_A GTP-binding protein; st 99.4 1.1E-12 3.8E-17 107.9 11.4 91 20-116 1-114 (397)
184 1r5b_A Eukaryotic peptide chai 99.4 2.6E-13 8.9E-18 114.1 6.7 119 17-151 41-195 (467)
185 2dy1_A Elongation factor G; tr 99.4 1.9E-12 6.6E-17 113.1 12.3 117 17-150 7-139 (665)
186 3j25_A Tetracycline resistance 99.4 1.6E-13 5.5E-18 119.4 4.6 118 19-153 2-135 (638)
187 1n0u_A EF-2, elongation factor 99.4 8.5E-13 2.9E-17 118.0 9.4 118 17-150 17-163 (842)
188 3avx_A Elongation factor TS, e 99.4 4.1E-12 1.4E-16 115.0 13.6 120 16-151 293-426 (1289)
189 4fn5_A EF-G 1, elongation fact 99.4 1.3E-12 4.4E-17 115.1 10.2 122 16-153 10-153 (709)
190 3sop_A Neuronal-specific septi 99.4 6.1E-12 2.1E-16 98.4 11.4 132 20-159 3-160 (270)
191 2qag_B Septin-6, protein NEDD5 99.3 6.6E-12 2.3E-16 103.5 11.0 131 12-151 35-190 (427)
192 2qnr_A Septin-2, protein NEDD5 99.3 2E-11 6.9E-16 97.0 12.3 128 18-151 17-169 (301)
193 3c5h_A Glucocorticoid receptor 99.3 3E-12 1E-16 99.5 6.7 82 103-185 162-248 (255)
194 1jal_A YCHF protein; nucleotid 99.2 8.8E-12 3E-16 100.9 5.4 90 20-115 3-108 (363)
195 3p32_A Probable GTPase RV1496/ 99.2 2.6E-11 9E-16 98.5 7.8 62 67-151 170-231 (355)
196 3h2y_A GTPase family protein; 99.2 5E-13 1.7E-17 109.0 -2.4 123 19-151 160-287 (368)
197 2www_A Methylmalonic aciduria 99.2 2.8E-11 9.7E-16 98.0 7.4 25 18-42 73-97 (349)
198 2ohf_A Protein OLA1, GTP-bindi 99.2 3.2E-11 1.1E-15 98.6 6.9 94 16-115 19-128 (396)
199 2p67_A LAO/AO transport system 99.2 1.3E-10 4.3E-15 94.0 9.9 62 67-151 147-208 (341)
200 3ec1_A YQEH GTPase; atnos1, at 99.1 5E-13 1.7E-17 109.1 -5.1 134 19-163 162-301 (369)
201 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 1.9E-10 6.5E-15 94.1 8.7 94 15-114 16-126 (392)
202 2dby_A GTP-binding protein; GD 99.1 1.1E-10 3.9E-15 94.8 7.1 90 20-115 2-111 (368)
203 1f5n_A Interferon-induced guan 99.1 5.6E-10 1.9E-14 95.7 10.4 109 16-130 35-147 (592)
204 2j37_W Signal recognition part 99.1 4.4E-09 1.5E-13 88.7 14.5 121 17-151 99-254 (504)
205 3szr_A Interferon-induced GTP- 99.0 1.2E-09 4E-14 94.7 11.2 128 20-151 46-228 (608)
206 1puj_A YLQF, conserved hypothe 99.0 9E-10 3.1E-14 86.6 8.4 66 17-87 118-183 (282)
207 1yrb_A ATP(GTP)binding protein 99.0 4.5E-09 1.5E-13 81.5 11.0 128 17-151 12-185 (262)
208 2qm8_A GTPase/ATPase; G protei 98.9 1.1E-09 3.9E-14 88.2 6.4 26 17-42 53-78 (337)
209 1tq4_A IIGP1, interferon-induc 98.9 7.1E-09 2.4E-13 85.4 11.1 119 19-150 69-188 (413)
210 3cnl_A YLQF, putative uncharac 98.8 4.9E-09 1.7E-13 81.5 5.3 60 20-84 100-159 (262)
211 3kl4_A SRP54, signal recogniti 98.8 1.6E-08 5.6E-13 83.6 8.4 123 18-151 96-252 (433)
212 3dm5_A SRP54, signal recogniti 98.8 1.2E-07 4E-12 78.6 12.8 122 18-151 99-253 (443)
213 2wsm_A Hydrogenase expression/ 98.7 1.4E-08 4.7E-13 76.6 5.6 25 18-42 29-53 (221)
214 3q5d_A Atlastin-1; G protein, 98.6 1.1E-07 3.8E-12 78.9 8.9 26 17-42 65-90 (447)
215 4fid_A G protein alpha subunit 98.6 3.6E-07 1.2E-11 73.3 10.7 81 59-151 152-242 (340)
216 2v3c_C SRP54, signal recogniti 98.6 6.1E-08 2.1E-12 80.5 6.3 121 18-151 98-252 (432)
217 3ohm_A Guanine nucleotide-bind 98.6 3.1E-07 1.1E-11 73.3 9.4 81 59-151 158-248 (327)
218 1rj9_A FTSY, signal recognitio 98.5 1.2E-06 4.1E-11 69.4 12.1 125 17-151 100-261 (304)
219 1t9h_A YLOQ, probable GTPase E 98.5 4.2E-08 1.4E-12 77.7 3.2 59 19-82 173-237 (307)
220 2yhs_A FTSY, cell division pro 98.5 6.3E-07 2.2E-11 75.1 9.4 134 17-161 291-461 (503)
221 3e70_C DPA, signal recognition 98.5 1.6E-06 5.3E-11 69.5 11.4 123 17-151 127-282 (328)
222 2yv5_A YJEQ protein; hydrolase 98.4 4.3E-07 1.5E-11 72.0 6.5 58 19-81 165-228 (302)
223 1j8m_F SRP54, signal recogniti 98.4 2.7E-06 9.4E-11 67.1 11.1 123 19-151 98-253 (297)
224 2hf9_A Probable hydrogenase ni 98.4 1.9E-07 6.6E-12 70.5 4.2 26 18-43 37-62 (226)
225 2xxa_A Signal recognition part 98.4 6.1E-06 2.1E-10 68.5 13.0 123 17-151 98-254 (433)
226 1u0l_A Probable GTPase ENGC; p 98.3 6.1E-07 2.1E-11 71.1 5.0 59 19-81 169-233 (301)
227 2rcn_A Probable GTPase ENGC; Y 98.3 3.7E-07 1.3E-11 73.7 3.3 30 19-48 215-245 (358)
228 2px0_A Flagellar biosynthesis 98.3 6.5E-07 2.2E-11 70.7 4.5 132 17-162 103-263 (296)
229 1vma_A Cell division protein F 98.3 9.8E-06 3.3E-10 64.2 11.1 125 17-151 102-263 (306)
230 3b9q_A Chloroplast SRP recepto 98.2 6.7E-06 2.3E-10 65.1 9.6 125 17-151 98-260 (302)
231 2og2_A Putative signal recogni 98.2 6.2E-06 2.1E-10 66.7 9.5 125 17-151 155-317 (359)
232 4ido_A Atlastin-1; GTPase, GTP 98.1 2.4E-05 8.3E-10 64.8 11.1 109 16-130 64-195 (457)
233 2ffh_A Protein (FFH); SRP54, s 98.1 5.9E-05 2E-09 62.3 12.8 122 18-151 97-251 (425)
234 1zu4_A FTSY; GTPase, signal re 98.1 3.6E-05 1.2E-09 61.4 11.0 125 17-151 103-268 (320)
235 3tif_A Uncharacterized ABC tra 98.0 3.7E-06 1.3E-10 64.1 4.1 30 19-48 31-60 (235)
236 3ney_A 55 kDa erythrocyte memb 98.0 7.6E-07 2.6E-11 66.0 -0.4 26 18-43 18-43 (197)
237 2pcj_A ABC transporter, lipopr 98.0 4.6E-06 1.6E-10 63.2 3.8 30 19-48 30-59 (224)
238 1b0u_A Histidine permease; ABC 98.0 6E-06 2E-10 64.0 4.1 31 18-48 31-61 (262)
239 2olj_A Amino acid ABC transpor 97.9 6.5E-06 2.2E-10 63.8 4.1 31 18-48 49-79 (263)
240 1mv5_A LMRA, multidrug resista 97.9 7.4E-06 2.5E-10 62.8 4.4 31 18-48 27-57 (243)
241 2cbz_A Multidrug resistance-as 97.9 6E-06 2.1E-10 63.0 3.9 30 18-47 30-59 (237)
242 1vpl_A ABC transporter, ATP-bi 97.9 6.7E-06 2.3E-10 63.5 4.1 31 18-48 40-70 (256)
243 1g6h_A High-affinity branched- 97.9 6.2E-06 2.1E-10 63.8 3.9 31 18-48 32-62 (257)
244 3gfo_A Cobalt import ATP-bindi 97.9 6.3E-06 2.2E-10 64.3 3.9 30 19-48 34-63 (275)
245 4g1u_C Hemin import ATP-bindin 97.9 6.7E-06 2.3E-10 63.9 4.1 29 19-47 37-65 (266)
246 1sgw_A Putative ABC transporte 97.9 5.8E-06 2E-10 62.1 3.6 30 19-48 35-64 (214)
247 2pze_A Cystic fibrosis transme 97.9 7.1E-06 2.4E-10 62.3 4.0 30 18-47 33-62 (229)
248 1ji0_A ABC transporter; ATP bi 97.9 7.1E-06 2.4E-10 62.8 3.9 31 18-48 31-61 (240)
249 2ff7_A Alpha-hemolysin translo 97.9 7.6E-06 2.6E-10 62.9 3.9 30 19-48 35-64 (247)
250 1lvg_A Guanylate kinase, GMP k 97.9 4.2E-06 1.4E-10 62.1 2.3 25 19-43 4-28 (198)
251 2onk_A Molybdate/tungstate ABC 97.9 8.7E-06 3E-10 62.3 4.0 29 20-48 25-53 (240)
252 1znw_A Guanylate kinase, GMP k 97.9 5.9E-06 2E-10 61.7 3.0 27 17-43 18-44 (207)
253 2ihy_A ABC transporter, ATP-bi 97.9 8.5E-06 2.9E-10 63.7 4.0 31 18-48 46-76 (279)
254 2ixe_A Antigen peptide transpo 97.9 8.9E-06 3.1E-10 63.4 4.1 31 18-48 44-74 (271)
255 1ls1_A Signal recognition part 97.9 1.9E-05 6.5E-10 62.3 6.0 122 18-151 97-251 (295)
256 2yz2_A Putative ABC transporte 97.9 9.2E-06 3.1E-10 63.1 4.1 31 18-48 32-62 (266)
257 1cip_A Protein (guanine nucleo 97.9 6E-05 2E-09 60.9 8.9 84 55-150 180-273 (353)
258 2nq2_C Hypothetical ABC transp 97.9 9.6E-06 3.3E-10 62.5 3.9 29 19-47 31-59 (253)
259 1htw_A HI0065; nucleotide-bind 97.8 8.2E-06 2.8E-10 58.3 2.9 30 18-48 32-61 (158)
260 2qi9_C Vitamin B12 import ATP- 97.8 1.2E-05 4.1E-10 61.9 4.0 29 18-46 25-53 (249)
261 1ye8_A Protein THEP1, hypothet 97.8 7.8E-06 2.7E-10 59.6 2.7 23 21-43 2-24 (178)
262 1kgd_A CASK, peripheral plasma 97.8 9.2E-06 3.1E-10 59.2 3.0 25 19-43 5-29 (180)
263 3a00_A Guanylate kinase, GMP k 97.8 6.1E-06 2.1E-10 60.5 2.0 25 20-44 2-26 (186)
264 3tr0_A Guanylate kinase, GMP k 97.8 1E-05 3.4E-10 60.0 3.2 25 18-42 6-30 (205)
265 2bbs_A Cystic fibrosis transme 97.8 1.4E-05 4.9E-10 62.8 3.9 30 18-47 63-92 (290)
266 1z6g_A Guanylate kinase; struc 97.8 8.8E-06 3E-10 61.3 2.5 25 19-43 23-47 (218)
267 4dzz_A Plasmid partitioning pr 97.8 1.6E-05 5.4E-10 58.9 3.9 82 68-163 75-156 (206)
268 2d2e_A SUFC protein; ABC-ATPas 97.8 1.5E-05 5E-10 61.4 3.8 25 18-42 28-52 (250)
269 3fvq_A Fe(3+) IONS import ATP- 97.8 1.6E-05 5.3E-10 64.3 4.0 30 19-48 30-59 (359)
270 1s96_A Guanylate kinase, GMP k 97.8 1.1E-05 3.8E-10 60.8 3.0 27 18-44 15-41 (219)
271 3tui_C Methionine import ATP-b 97.8 1.7E-05 6E-10 64.1 4.2 31 18-48 53-83 (366)
272 3nh6_A ATP-binding cassette SU 97.8 1.1E-05 3.7E-10 63.9 2.9 31 18-48 79-109 (306)
273 2zu0_C Probable ATP-dependent 97.8 1.6E-05 5.5E-10 61.8 3.8 25 18-42 45-69 (267)
274 2ghi_A Transport protein; mult 97.8 1.7E-05 5.9E-10 61.4 3.7 27 18-44 45-71 (260)
275 2pjz_A Hypothetical protein ST 97.7 1.9E-05 6.6E-10 61.2 3.9 29 19-48 30-58 (263)
276 1zp6_A Hypothetical protein AT 97.7 2.1E-05 7.3E-10 57.5 3.9 25 18-42 8-32 (191)
277 3rlf_A Maltose/maltodextrin im 97.7 2.2E-05 7.4E-10 63.9 4.2 30 19-48 29-58 (381)
278 2yyz_A Sugar ABC transporter, 97.7 2.2E-05 7.6E-10 63.5 4.2 31 18-48 28-58 (359)
279 2it1_A 362AA long hypothetical 97.7 2.3E-05 7.9E-10 63.4 4.2 31 18-48 28-58 (362)
280 1z47_A CYSA, putative ABC-tran 97.7 2.2E-05 7.7E-10 63.3 4.0 30 19-48 41-70 (355)
281 3b85_A Phosphate starvation-in 97.7 8.3E-06 2.8E-10 61.0 1.4 29 19-48 22-50 (208)
282 3c8u_A Fructokinase; YP_612366 97.7 1.6E-05 5.6E-10 59.2 3.0 29 16-44 19-47 (208)
283 1v43_A Sugar-binding transport 97.7 2.7E-05 9.3E-10 63.3 4.2 31 18-48 36-66 (372)
284 4gp7_A Metallophosphoesterase; 97.7 2.7E-05 9.1E-10 56.3 3.6 24 18-41 8-31 (171)
285 3asz_A Uridine kinase; cytidin 97.7 2E-05 6.7E-10 58.8 2.9 26 17-42 4-29 (211)
286 1g29_1 MALK, maltose transport 97.7 2.8E-05 9.6E-10 63.2 4.0 30 19-48 29-58 (372)
287 3d31_A Sulfate/molybdate ABC t 97.7 2E-05 6.9E-10 63.5 3.1 31 18-48 25-55 (348)
288 2jeo_A Uridine-cytidine kinase 97.7 2.3E-05 8E-10 60.0 3.2 36 5-42 13-48 (245)
289 4b4t_L 26S protease subunit RP 97.6 0.00035 1.2E-08 57.9 10.0 71 18-114 214-284 (437)
290 3tau_A Guanylate kinase, GMP k 97.6 3E-05 1E-09 57.8 3.3 26 18-43 7-32 (208)
291 2eyu_A Twitching motility prot 97.6 2.9E-05 9.9E-10 60.1 3.2 28 17-44 23-50 (261)
292 1oxx_K GLCV, glucose, ABC tran 97.6 1.9E-05 6.6E-10 63.8 2.3 31 18-48 30-60 (353)
293 4b4t_J 26S protease regulatory 97.6 0.00065 2.2E-08 55.6 11.0 25 18-42 181-205 (405)
294 3ozx_A RNAse L inhibitor; ATP 97.6 5E-05 1.7E-09 64.7 4.3 32 17-48 23-54 (538)
295 2v9p_A Replication protein E1; 97.6 3.3E-05 1.1E-09 61.0 3.0 26 18-43 125-150 (305)
296 3lnc_A Guanylate kinase, GMP k 97.6 2.6E-05 8.7E-10 59.1 2.3 25 19-43 27-52 (231)
297 1zcb_A G alpha I/13; GTP-bindi 97.6 0.00018 6.1E-09 58.3 7.4 81 58-150 191-281 (362)
298 4b4t_I 26S protease regulatory 97.6 0.00051 1.8E-08 56.5 10.0 25 18-42 215-239 (437)
299 1knq_A Gluconate kinase; ALFA/ 97.6 4.8E-05 1.7E-09 54.9 3.6 26 16-41 5-30 (175)
300 3thx_A DNA mismatch repair pro 97.6 0.00097 3.3E-08 60.3 12.4 34 4-39 649-682 (934)
301 3aez_A Pantothenate kinase; tr 97.5 4.5E-05 1.5E-09 60.6 3.3 29 16-44 87-115 (312)
302 1yqt_A RNAse L inhibitor; ATP- 97.5 6.2E-05 2.1E-09 64.3 4.3 32 17-48 45-76 (538)
303 2bbw_A Adenylate kinase 4, AK4 97.5 6E-05 2E-09 57.6 3.8 28 19-46 27-57 (246)
304 2j41_A Guanylate kinase; GMP, 97.5 5E-05 1.7E-09 56.2 3.2 25 19-43 6-30 (207)
305 4b4t_K 26S protease regulatory 97.5 0.001 3.5E-08 55.0 11.3 25 18-42 205-229 (428)
306 2i3b_A HCR-ntpase, human cance 97.5 3.7E-05 1.3E-09 56.6 2.4 25 20-44 2-26 (189)
307 3gd7_A Fusion complex of cysti 97.5 4.2E-05 1.4E-09 62.5 2.7 27 18-44 46-72 (390)
308 3j16_B RLI1P; ribosome recycli 97.5 7.2E-05 2.5E-09 64.7 4.3 32 17-48 101-132 (608)
309 1azs_C GS-alpha; complex (lyas 97.5 0.00022 7.7E-09 58.4 6.8 78 60-151 209-298 (402)
310 1ex7_A Guanylate kinase; subst 97.5 2E-05 7E-10 57.7 0.6 23 20-42 2-24 (186)
311 4b4t_H 26S protease regulatory 97.5 0.00067 2.3E-08 56.4 9.6 25 18-42 242-266 (467)
312 2gza_A Type IV secretion syste 97.5 6.6E-05 2.2E-09 60.9 3.4 28 18-45 174-201 (361)
313 4eun_A Thermoresistant glucoki 97.5 6.2E-05 2.1E-09 55.7 3.0 26 17-42 27-52 (200)
314 2bdt_A BH3686; alpha-beta prot 97.4 6E-05 2E-09 55.1 2.6 22 20-41 3-24 (189)
315 4e22_A Cytidylate kinase; P-lo 97.4 9.7E-05 3.3E-09 56.8 3.9 30 17-46 25-57 (252)
316 3bk7_A ABC transporter ATP-bin 97.4 9.5E-05 3.3E-09 63.9 4.2 32 17-48 115-146 (607)
317 3qf4_B Uncharacterized ABC tra 97.4 9.6E-05 3.3E-09 63.9 4.0 31 18-48 380-410 (598)
318 1sq5_A Pantothenate kinase; P- 97.4 8.7E-05 3E-09 58.8 3.4 28 16-43 77-104 (308)
319 4a74_A DNA repair and recombin 97.4 7.5E-05 2.6E-09 56.1 2.9 26 18-43 24-49 (231)
320 3b60_A Lipid A export ATP-bind 97.4 0.0001 3.4E-09 63.6 4.0 31 18-48 368-398 (582)
321 2ehv_A Hypothetical protein PH 97.4 9.9E-05 3.4E-09 56.2 3.6 24 17-40 28-51 (251)
322 2pt7_A CAG-ALFA; ATPase, prote 97.4 7.1E-05 2.4E-09 59.9 2.8 27 19-45 171-197 (330)
323 3b5x_A Lipid A export ATP-bind 97.4 0.00011 3.6E-09 63.5 4.0 31 18-48 368-398 (582)
324 3thx_B DNA mismatch repair pro 97.4 0.0014 4.7E-08 59.2 11.1 37 3-41 659-695 (918)
325 2yl4_A ATP-binding cassette SU 97.3 9.8E-05 3.4E-09 63.8 3.4 31 18-48 369-399 (595)
326 2npi_A Protein CLP1; CLP1-PCF1 97.3 6.3E-05 2.2E-09 62.9 2.1 30 18-47 137-166 (460)
327 3uie_A Adenylyl-sulfate kinase 97.3 0.00011 3.8E-09 54.3 3.2 27 17-43 23-49 (200)
328 3ozx_A RNAse L inhibitor; ATP 97.3 0.00014 4.8E-09 62.0 4.2 31 18-48 293-323 (538)
329 3jvv_A Twitching mobility prot 97.3 0.0001 3.5E-09 59.6 3.2 26 19-44 123-148 (356)
330 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.0023 7.9E-08 48.9 10.7 25 18-42 38-62 (262)
331 1yqt_A RNAse L inhibitor; ATP- 97.3 0.00016 5.4E-09 61.8 4.2 31 18-48 311-341 (538)
332 4a82_A Cystic fibrosis transme 97.3 9E-05 3.1E-09 63.8 2.7 31 18-48 366-396 (578)
333 1kag_A SKI, shikimate kinase I 97.3 9.4E-05 3.2E-09 53.1 2.4 23 20-42 5-27 (173)
334 2qor_A Guanylate kinase; phosp 97.3 0.00013 4.6E-09 54.0 3.3 25 18-42 11-35 (204)
335 4b4t_M 26S protease regulatory 97.3 0.00069 2.4E-08 56.1 7.8 25 18-42 214-238 (434)
336 3bk7_A ABC transporter ATP-bin 97.3 0.00017 5.7E-09 62.4 4.2 31 18-48 381-411 (607)
337 2ewv_A Twitching motility prot 97.3 0.00012 4.1E-09 59.6 3.1 28 17-44 134-161 (372)
338 3tqc_A Pantothenate kinase; bi 97.3 0.00016 5.5E-09 57.5 3.6 27 16-42 89-115 (321)
339 2oap_1 GSPE-2, type II secreti 97.3 0.00013 4.4E-09 61.8 3.1 26 19-44 260-285 (511)
340 2vp4_A Deoxynucleoside kinase; 97.3 0.00015 5.1E-09 54.9 3.2 26 17-42 18-43 (230)
341 3ec2_A DNA replication protein 97.3 0.00011 3.8E-09 53.2 2.3 26 19-44 38-63 (180)
342 2qt1_A Nicotinamide riboside k 97.3 0.00028 9.6E-09 52.3 4.5 27 16-42 18-44 (207)
343 3qf4_A ABC transporter, ATP-bi 97.3 0.00014 4.7E-09 62.8 3.2 31 18-48 368-398 (587)
344 1p9r_A General secretion pathw 97.2 0.00016 5.4E-09 59.8 3.1 27 18-44 166-192 (418)
345 2kjq_A DNAA-related protein; s 97.2 0.00012 4E-09 51.7 2.0 27 18-44 35-61 (149)
346 3h4m_A Proteasome-activating n 97.2 0.0017 5.8E-08 50.4 8.9 24 19-42 51-74 (285)
347 1lw7_A Transcriptional regulat 97.2 0.00013 4.4E-09 59.2 2.5 27 19-45 170-196 (365)
348 2f1r_A Molybdopterin-guanine d 97.2 6.9E-05 2.4E-09 54.2 0.7 25 20-44 3-27 (171)
349 3j16_B RLI1P; ribosome recycli 97.2 0.00026 8.9E-09 61.2 4.2 29 20-48 379-407 (608)
350 3end_A Light-independent proto 97.2 0.0012 4E-08 52.1 7.7 68 68-149 156-225 (307)
351 1u0l_A Probable GTPase ENGC; p 97.2 0.00076 2.6E-08 53.2 6.6 97 69-185 63-166 (301)
352 2obl_A ESCN; ATPase, hydrolase 97.2 0.00016 5.4E-09 58.3 2.6 29 17-45 69-97 (347)
353 3euj_A Chromosome partition pr 97.2 0.00014 5E-09 60.9 2.3 27 20-46 30-56 (483)
354 1jjv_A Dephospho-COA kinase; P 97.2 0.00026 9.1E-09 52.4 3.5 22 20-41 3-24 (206)
355 1rz3_A Hypothetical protein rb 97.2 0.00025 8.6E-09 52.4 3.4 26 17-42 20-45 (201)
356 3vaa_A Shikimate kinase, SK; s 97.1 0.00031 1.1E-08 51.8 3.6 33 8-42 16-48 (199)
357 1odf_A YGR205W, hypothetical 3 97.1 0.00031 1.1E-08 55.1 3.7 29 15-43 27-55 (290)
358 1cke_A CK, MSSA, protein (cyti 97.1 0.00023 7.9E-09 53.4 2.9 23 20-42 6-28 (227)
359 2iw3_A Elongation factor 3A; a 97.1 0.00019 6.3E-09 65.0 2.4 29 19-47 699-727 (986)
360 3kta_A Chromosome segregation 97.1 0.0003 1E-08 50.9 3.2 22 21-42 28-49 (182)
361 2xtz_A Guanine nucleotide-bind 97.1 0.001 3.4E-08 53.7 6.2 72 68-150 182-263 (354)
362 3cwq_A Para family chromosome 97.0 0.00086 2.9E-08 49.9 5.2 78 68-163 67-147 (209)
363 1np6_A Molybdopterin-guanine d 97.0 0.00041 1.4E-08 50.2 3.3 23 20-42 7-29 (174)
364 2if2_A Dephospho-COA kinase; a 97.0 0.0003 1E-08 51.9 2.6 22 20-41 2-23 (204)
365 2dpy_A FLII, flagellum-specifi 97.0 0.00026 9E-09 58.8 2.5 29 17-45 155-183 (438)
366 1nij_A Hypothetical protein YJ 97.0 0.00026 8.8E-09 56.4 2.4 25 19-43 4-28 (318)
367 1wb9_A DNA mismatch repair pro 97.0 0.00034 1.2E-08 62.3 3.2 38 3-43 594-631 (800)
368 2wwf_A Thymidilate kinase, put 97.0 0.00058 2E-08 50.6 4.0 25 17-41 8-32 (212)
369 1xwi_A SKD1 protein; VPS4B, AA 97.0 0.0073 2.5E-07 48.0 10.6 25 18-42 44-68 (322)
370 3lw7_A Adenylate kinase relate 97.0 0.00047 1.6E-08 49.2 3.2 20 20-39 2-21 (179)
371 2x8a_A Nuclear valosin-contain 97.0 0.00031 1.1E-08 54.6 2.4 21 22-42 47-67 (274)
372 1ly1_A Polynucleotide kinase; 97.0 0.00054 1.8E-08 49.3 3.6 22 20-41 3-24 (181)
373 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00062 2.1E-08 47.9 3.7 21 20-40 24-44 (149)
374 3kb2_A SPBC2 prophage-derived 96.9 0.0005 1.7E-08 49.1 3.2 22 20-41 2-23 (173)
375 3cf2_A TER ATPase, transitiona 96.9 0.0049 1.7E-07 54.9 10.0 72 17-114 236-307 (806)
376 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.00044 1.5E-08 51.9 2.9 25 18-42 22-46 (235)
377 3t61_A Gluconokinase; PSI-biol 96.9 0.00045 1.5E-08 51.0 2.9 24 19-42 18-41 (202)
378 3b9p_A CG5977-PA, isoform A; A 96.9 0.0072 2.5E-07 47.1 10.0 24 19-42 54-77 (297)
379 4f4c_A Multidrug resistance pr 96.9 0.00037 1.3E-08 65.5 2.9 31 18-48 1104-1134(1321)
380 3qf7_A RAD50; ABC-ATPase, ATPa 96.9 0.00062 2.1E-08 55.2 3.7 20 21-40 25-44 (365)
381 3cm0_A Adenylate kinase; ATP-b 96.9 0.00062 2.1E-08 49.3 3.4 22 19-40 4-25 (186)
382 1qhx_A CPT, protein (chloramph 96.9 0.00066 2.2E-08 48.9 3.5 22 20-41 4-25 (178)
383 1gvn_B Zeta; postsegregational 96.9 0.00075 2.6E-08 52.8 3.9 26 16-41 30-55 (287)
384 3g5u_A MCG1178, multidrug resi 96.9 0.00061 2.1E-08 63.9 3.8 31 18-48 415-445 (1284)
385 1ixz_A ATP-dependent metallopr 96.9 0.00046 1.6E-08 52.8 2.5 21 22-42 52-72 (254)
386 1uf9_A TT1252 protein; P-loop, 96.8 0.0008 2.7E-08 49.4 3.7 27 16-42 5-31 (203)
387 1cr0_A DNA primase/helicase; R 96.8 0.00056 1.9E-08 53.7 3.0 28 17-44 33-60 (296)
388 1y63_A LMAJ004144AAA protein; 96.8 0.00093 3.2E-08 48.6 4.0 25 18-42 9-33 (184)
389 1ukz_A Uridylate kinase; trans 96.8 0.001 3.5E-08 49.0 4.2 26 16-41 12-37 (203)
390 1xjc_A MOBB protein homolog; s 96.8 0.00079 2.7E-08 48.4 3.5 24 19-42 4-27 (169)
391 1ewq_A DNA mismatch repair pro 96.8 0.00053 1.8E-08 60.8 3.0 35 4-43 566-600 (765)
392 2rhm_A Putative kinase; P-loop 96.8 0.00085 2.9E-08 48.9 3.6 23 19-41 5-27 (193)
393 2yvu_A Probable adenylyl-sulfa 96.8 0.0011 3.8E-08 48.1 4.3 26 17-42 11-36 (186)
394 1aky_A Adenylate kinase; ATP:A 96.8 0.00083 2.8E-08 50.2 3.6 24 18-41 3-26 (220)
395 4f4c_A Multidrug resistance pr 96.8 0.00073 2.5E-08 63.6 3.9 31 18-48 443-473 (1321)
396 1kht_A Adenylate kinase; phosp 96.8 0.0008 2.8E-08 48.8 3.4 22 20-41 4-25 (192)
397 1qhl_A Protein (cell division 96.8 6.2E-05 2.1E-09 56.9 -2.8 26 21-46 29-54 (227)
398 3trf_A Shikimate kinase, SK; a 96.8 0.00089 3E-08 48.5 3.4 23 19-41 5-27 (185)
399 2pez_A Bifunctional 3'-phospho 96.8 0.001 3.5E-08 48.0 3.7 25 18-42 4-28 (179)
400 1in4_A RUVB, holliday junction 96.8 0.00063 2.2E-08 54.4 2.7 24 20-43 52-75 (334)
401 2iw3_A Elongation factor 3A; a 96.7 0.00067 2.3E-08 61.5 2.9 25 18-42 460-484 (986)
402 3vfd_A Spastin; ATPase, microt 96.7 0.0077 2.6E-07 49.1 9.0 24 19-42 148-171 (389)
403 1svm_A Large T antigen; AAA+ f 96.7 0.00082 2.8E-08 54.7 3.1 25 18-42 168-192 (377)
404 2c95_A Adenylate kinase 1; tra 96.7 0.0011 3.9E-08 48.3 3.6 24 18-41 8-31 (196)
405 1iy2_A ATP-dependent metallopr 96.7 0.00069 2.4E-08 52.6 2.5 21 22-42 76-96 (278)
406 2v54_A DTMP kinase, thymidylat 96.7 0.0012 4.2E-08 48.4 3.8 24 19-42 4-27 (204)
407 1tev_A UMP-CMP kinase; ploop, 96.7 0.0012 4E-08 48.1 3.6 23 19-41 3-25 (196)
408 2cdn_A Adenylate kinase; phosp 96.7 0.0014 5E-08 48.1 4.0 25 17-41 18-42 (201)
409 2cvh_A DNA repair and recombin 96.7 0.00096 3.3E-08 49.6 3.0 24 18-41 19-42 (220)
410 2jaq_A Deoxyguanosine kinase; 96.7 0.0011 3.7E-08 48.7 3.3 22 21-42 2-23 (205)
411 2plr_A DTMP kinase, probable t 96.7 0.0013 4.4E-08 48.6 3.7 23 19-41 4-26 (213)
412 3g5u_A MCG1178, multidrug resi 96.7 0.0011 3.7E-08 62.2 4.0 31 18-48 1058-1088(1284)
413 1nks_A Adenylate kinase; therm 96.7 0.0011 3.8E-08 48.1 3.3 23 20-42 2-24 (194)
414 1n0w_A DNA repair protein RAD5 96.7 0.00092 3.2E-08 50.5 2.9 25 18-42 23-47 (243)
415 1sxj_E Activator 1 40 kDa subu 96.7 0.0054 1.8E-07 49.1 7.5 21 22-42 39-59 (354)
416 3tlx_A Adenylate kinase 2; str 96.6 0.0014 4.8E-08 49.9 3.8 25 17-41 27-51 (243)
417 4aby_A DNA repair protein RECN 96.6 0.00029 1E-08 58.0 -0.2 23 18-41 60-82 (415)
418 2chg_A Replication factor C sm 96.6 0.019 6.5E-07 42.1 9.9 22 21-42 40-61 (226)
419 3fb4_A Adenylate kinase; psych 96.6 0.0012 4.2E-08 49.0 3.3 21 21-41 2-22 (216)
420 3iij_A Coilin-interacting nucl 96.6 0.0012 4.2E-08 47.6 3.1 22 19-40 11-32 (180)
421 1d2n_A N-ethylmaleimide-sensit 96.6 0.012 4.1E-07 45.3 8.9 25 18-42 63-87 (272)
422 2p5t_B PEZT; postsegregational 96.6 0.001 3.6E-08 50.9 2.8 26 16-41 29-54 (253)
423 1nn5_A Similar to deoxythymidy 96.6 0.0015 5.1E-08 48.4 3.6 24 18-41 8-31 (215)
424 3nwj_A ATSK2; P loop, shikimat 96.6 0.00095 3.3E-08 51.2 2.5 23 19-41 48-70 (250)
425 1vht_A Dephospho-COA kinase; s 96.6 0.0016 5.6E-08 48.5 3.7 23 19-41 4-26 (218)
426 3dl0_A Adenylate kinase; phosp 96.6 0.0014 4.7E-08 48.8 3.3 21 21-41 2-22 (216)
427 3qks_A DNA double-strand break 96.6 0.0017 5.9E-08 48.0 3.7 21 20-40 24-44 (203)
428 1zd8_A GTP:AMP phosphotransfer 96.5 0.0015 5E-08 49.1 3.3 22 19-40 7-28 (227)
429 1zak_A Adenylate kinase; ATP:A 96.5 0.0014 4.9E-08 49.0 3.2 23 19-41 5-27 (222)
430 3umf_A Adenylate kinase; rossm 96.5 0.0023 8E-08 47.9 4.2 25 18-42 28-52 (217)
431 2bwj_A Adenylate kinase 5; pho 96.5 0.0016 5.6E-08 47.6 3.3 23 19-41 12-34 (199)
432 1qf9_A UMP/CMP kinase, protein 96.5 0.0022 7.4E-08 46.5 4.0 23 19-41 6-28 (194)
433 2ze6_A Isopentenyl transferase 96.5 0.0017 5.8E-08 49.8 3.4 22 20-41 2-23 (253)
434 3a8t_A Adenylate isopentenyltr 96.5 0.0045 1.5E-07 49.4 5.9 24 20-43 41-64 (339)
435 2ce7_A Cell division protein F 96.5 0.02 6.7E-07 48.0 10.1 23 20-42 50-72 (476)
436 1via_A Shikimate kinase; struc 96.5 0.0015 5E-08 47.0 2.9 21 21-41 6-26 (175)
437 2f6r_A COA synthase, bifunctio 96.4 0.0039 1.3E-07 48.6 5.2 24 17-40 73-96 (281)
438 3qkt_A DNA double-strand break 96.4 0.002 7E-08 51.6 3.7 22 20-41 24-45 (339)
439 1nlf_A Regulatory protein REPA 96.4 0.0014 4.9E-08 50.9 2.8 25 17-41 28-52 (279)
440 3ux8_A Excinuclease ABC, A sub 96.4 0.001 3.6E-08 58.2 2.1 22 19-40 348-369 (670)
441 1jbk_A CLPB protein; beta barr 96.4 0.0023 7.7E-08 46.1 3.7 24 19-42 43-66 (195)
442 1lv7_A FTSH; alpha/beta domain 96.4 0.0017 5.9E-08 49.6 3.2 23 20-42 46-68 (257)
443 1m7g_A Adenylylsulfate kinase; 96.4 0.0023 7.8E-08 47.5 3.7 25 18-42 24-48 (211)
444 4eaq_A DTMP kinase, thymidylat 96.4 0.0025 8.5E-08 48.1 3.8 26 17-42 24-49 (229)
445 1uj2_A Uridine-cytidine kinase 96.4 0.0022 7.7E-08 49.0 3.6 25 17-41 20-44 (252)
446 1gtv_A TMK, thymidylate kinase 96.4 0.00078 2.7E-08 49.9 0.9 22 21-42 2-23 (214)
447 3r20_A Cytidylate kinase; stru 96.4 0.0024 8.1E-08 48.4 3.5 22 19-40 9-30 (233)
448 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0025 8.6E-08 49.0 3.7 23 19-41 4-26 (260)
449 1w1w_A Structural maintenance 96.4 0.0018 6.2E-08 53.6 3.0 26 19-44 26-51 (430)
450 2pt5_A Shikimate kinase, SK; a 96.3 0.0025 8.4E-08 45.3 3.3 21 21-41 2-22 (168)
451 2z0h_A DTMP kinase, thymidylat 96.3 0.0024 8.1E-08 46.6 3.3 21 21-41 2-22 (197)
452 2o8b_B DNA mismatch repair pro 96.3 0.0021 7.2E-08 58.8 3.5 40 4-44 769-813 (1022)
453 2iyv_A Shikimate kinase, SK; t 96.3 0.002 6.9E-08 46.6 2.8 22 20-41 3-24 (184)
454 2o5v_A DNA replication and rep 96.3 0.0018 6.2E-08 52.3 2.8 21 21-41 28-48 (359)
455 3sr0_A Adenylate kinase; phosp 96.3 0.0024 8.2E-08 47.5 3.3 22 21-42 2-23 (206)
456 1e4v_A Adenylate kinase; trans 96.3 0.0023 7.8E-08 47.6 3.1 21 21-41 2-22 (214)
457 2vli_A Antibiotic resistance p 96.3 0.0018 6.1E-08 46.7 2.4 23 19-41 5-27 (183)
458 3cr8_A Sulfate adenylyltranfer 96.3 0.0012 4.2E-08 56.4 1.7 28 17-44 367-394 (552)
459 1e6c_A Shikimate kinase; phosp 96.3 0.0023 7.8E-08 45.7 2.9 22 20-41 3-24 (173)
460 1ak2_A Adenylate kinase isoenz 96.3 0.0031 1.1E-07 47.6 3.8 25 17-41 14-38 (233)
461 1q3t_A Cytidylate kinase; nucl 96.3 0.003 1E-07 47.8 3.7 25 17-41 14-38 (236)
462 2pbr_A DTMP kinase, thymidylat 96.3 0.0026 8.8E-08 46.2 3.2 21 21-41 2-22 (195)
463 1pzn_A RAD51, DNA repair and r 96.2 0.0023 7.8E-08 51.6 2.9 26 18-43 130-155 (349)
464 1e69_A Chromosome segregation 96.2 0.0023 8E-08 50.8 2.9 21 21-41 26-46 (322)
465 3bos_A Putative DNA replicatio 96.2 0.0031 1E-07 47.3 3.5 25 18-42 51-75 (242)
466 2w58_A DNAI, primosome compone 96.2 0.0031 1.1E-07 46.3 3.4 24 20-43 55-78 (202)
467 4fcw_A Chaperone protein CLPB; 96.2 0.0043 1.5E-07 48.7 4.4 27 17-43 45-71 (311)
468 1tf7_A KAIC; homohexamer, hexa 96.2 0.0022 7.4E-08 54.6 2.8 22 18-39 38-59 (525)
469 1qvr_A CLPB protein; coiled co 96.2 0.0095 3.2E-07 53.7 7.0 24 20-43 192-215 (854)
470 2xb4_A Adenylate kinase; ATP-b 96.2 0.0031 1.1E-07 47.3 3.3 21 21-41 2-22 (223)
471 3be4_A Adenylate kinase; malar 96.2 0.003 1E-07 47.1 3.1 22 20-41 6-27 (217)
472 2qmh_A HPR kinase/phosphorylas 96.1 0.0041 1.4E-07 45.8 3.6 24 19-42 34-57 (205)
473 3foz_A TRNA delta(2)-isopenten 96.1 0.0045 1.5E-07 48.8 4.0 24 19-42 10-33 (316)
474 1r6b_X CLPA protein; AAA+, N-t 96.1 0.011 3.7E-07 52.5 6.9 24 19-42 207-230 (758)
475 2p65_A Hypothetical protein PF 96.1 0.0029 9.9E-08 45.3 2.7 24 19-42 43-66 (187)
476 3t15_A Ribulose bisphosphate c 96.1 0.0057 1.9E-07 47.9 4.5 25 18-42 35-59 (293)
477 2grj_A Dephospho-COA kinase; T 96.1 0.0038 1.3E-07 45.8 3.3 24 18-41 11-34 (192)
478 3cf0_A Transitional endoplasmi 96.1 0.004 1.4E-07 49.0 3.6 25 18-42 48-72 (301)
479 3exa_A TRNA delta(2)-isopenten 96.1 0.0044 1.5E-07 49.0 3.7 24 19-42 3-26 (322)
480 1zuh_A Shikimate kinase; alpha 96.1 0.0042 1.4E-07 44.2 3.3 22 20-41 8-29 (168)
481 1a7j_A Phosphoribulokinase; tr 96.0 0.0023 8E-08 50.1 2.0 24 18-41 4-27 (290)
482 3syl_A Protein CBBX; photosynt 96.0 0.0054 1.8E-07 48.1 4.0 26 17-42 65-90 (309)
483 3ux8_A Excinuclease ABC, A sub 96.0 0.0035 1.2E-07 54.9 3.0 19 18-36 43-61 (670)
484 3auy_A DNA double-strand break 96.0 0.0048 1.6E-07 50.1 3.6 21 20-40 26-46 (371)
485 1ltq_A Polynucleotide kinase; 96.0 0.0049 1.7E-07 48.2 3.6 22 20-41 3-24 (301)
486 3zvl_A Bifunctional polynucleo 95.9 0.0064 2.2E-07 50.1 4.3 26 17-42 256-281 (416)
487 3pvs_A Replication-associated 95.9 0.19 6.3E-06 41.8 13.1 23 20-42 51-73 (447)
488 2dr3_A UPF0273 protein PH0284; 95.9 0.0052 1.8E-07 46.4 3.4 23 18-40 22-44 (247)
489 3m6a_A ATP-dependent protease 95.9 0.004 1.4E-07 53.2 2.9 26 18-43 107-132 (543)
490 3crm_A TRNA delta(2)-isopenten 95.9 0.0057 2E-07 48.6 3.5 23 20-42 6-28 (323)
491 3ake_A Cytidylate kinase; CMP 95.8 0.0056 1.9E-07 45.0 3.3 21 21-41 4-24 (208)
492 3d3q_A TRNA delta(2)-isopenten 95.8 0.0056 1.9E-07 49.0 3.4 23 20-42 8-30 (340)
493 3eph_A TRNA isopentenyltransfe 95.8 0.006 2.1E-07 49.9 3.5 23 19-41 2-24 (409)
494 3n70_A Transport activator; si 95.8 0.0061 2.1E-07 42.4 3.1 23 20-42 25-47 (145)
495 3lv8_A DTMP kinase, thymidylat 95.8 0.0065 2.2E-07 46.1 3.4 32 11-42 19-50 (236)
496 3hu3_A Transitional endoplasmi 95.7 0.038 1.3E-06 46.5 8.1 24 19-42 238-261 (489)
497 1njg_A DNA polymerase III subu 95.6 0.0076 2.6E-07 44.9 3.3 23 20-42 46-68 (250)
498 2qby_A CDC6 homolog 1, cell di 95.6 0.0071 2.4E-07 48.7 3.3 26 18-43 44-69 (386)
499 1tue_A Replication protein E1; 95.6 0.0061 2.1E-07 45.1 2.6 23 20-42 59-81 (212)
500 4edh_A DTMP kinase, thymidylat 95.6 0.0092 3.2E-07 44.5 3.7 24 18-41 5-28 (213)
No 1
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.95 E-value=2e-26 Score=178.16 Aligned_cols=186 Identities=37% Similarity=0.631 Sum_probs=115.2
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
+....++|+|+|++|+|||||+|+|+|...+.......+.|..+......+ .+..+.||||||+.+......+..+++.
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHH
Confidence 345568999999999999999999999887655544446777777777777 8889999999999987777777788899
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhh----
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK---- 170 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~---- 170 (221)
.++..+.+.+|++|+|++++ +++..+..++..+.+.++.....|+++|+||+|+.. ...+++|+.. ....++
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~--~~~~~~~i~~-~~~~l~~l~~ 179 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLG--DTNLHDYLRE-APEDIQDLMD 179 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCC--cccHHHHHHh-chHHHHHHHH
Confidence 99888889999999999998 788888899999998888766678999999999886 4444444432 111111
Q ss_pred --------------------hhHHHHHhHHHHHHhcCC--CCHHHHHHHHHHHHhcH
Q 027618 171 --------------------KGATKLRDQQFEVDSLKG--YSKREISELKEQMHKSY 205 (221)
Q Consensus 171 --------------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 205 (221)
.-...+..+.+++.++++ |+.+.+++.++++.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e~~~~~~~ 236 (239)
T 3lxx_A 180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQKQT 236 (239)
T ss_dssp HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCTTSCC----------------
T ss_pred HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHH
Confidence 112233444555555555 88887777776655443
No 2
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.94 E-value=2.3e-25 Score=172.92 Aligned_cols=196 Identities=32% Similarity=0.462 Sum_probs=135.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCc-hHHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS-EFVGKEIV 94 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~-~~~~~~~~ 94 (221)
..+..+|+|+|.+|+|||||+|+|++...........+.|..+......+ .+..+.||||||+.+..... +.....+.
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CCcEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 35568999999999999999999999987666555556777787777777 88999999999998654333 33456667
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccc-cccEEEEEecCCCCCCChhhHHHHhccc---------
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKI-FDYMIVVFTGGDELEDNDETLEDYLGRE--------- 164 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ivv~tk~D~~~~~~~~~~~~l~~~--------- 164 (221)
.++..+.+.+|++|+|++++ +++..+..+++.+.+.++... ..|++++.||.|+.. ..+++|+.+.
T Consensus 97 ~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~---~~~~~~l~~~~~~~l~~l~ 172 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLG-RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG---GSLHDYVSNTENRALRELV 172 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETT-BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHH
T ss_pred HHHHhcCCCCCEEEEEEeCC-CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC---CCHHHHHhhcccHHHHHHH
Confidence 77767779999999999998 799999999999999988653 347888999999754 2334444321
Q ss_pred --C-Cch--hh----------hhHHHHHhHHHHHHhcCC--CCHHHHHHHHHHHHhcHHHHHHHHHhhc
Q 027618 165 --C-PKP--LK----------KGATKLRDQQFEVDSLKG--YSKREISELKEQMHKSYEDQLKRITEMV 216 (221)
Q Consensus 165 --~-~~~--l~----------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (221)
+ ... +. .-...+..+.+++.++++ |++++++.++.......+++..+..+.+
T Consensus 173 ~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (247)
T 3lxw_A 173 AECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSNEVYELAQVLRWAGPEERLRRVAERV 241 (247)
T ss_dssp HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred HHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 1 111 11 112334556666776666 9999998887655455566666665554
No 3
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.91 E-value=1.4e-22 Score=158.41 Aligned_cols=136 Identities=33% Similarity=0.580 Sum_probs=109.4
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 027618 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
++.....+|+++|++|+|||||+|+|++...+.....+.+.|..+......+ .+..+.||||||+.++........+.+
T Consensus 17 ~~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 17 CASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ----CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHH
Confidence 3445668999999999999999999999886555444444666677667777 888999999999998777666666777
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEe-cCCCCC
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT-GGDELE 151 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~t-k~D~~~ 151 (221)
..++..+++.+|++++|++++ +++..+..+++.+.+.++.....|.++|+| |+|+..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 888888889999999999999 688888888899999888665567888887 999875
No 4
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.86 E-value=1.7e-20 Score=146.66 Aligned_cols=143 Identities=22% Similarity=0.314 Sum_probs=109.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
....+|+++|++|+|||||+|+|++....... ...+.|.........+ .+..+.+|||||+.++....+...+.+..+
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVS-PFQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCC-SSCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 35689999999999999999999998753332 2334455566666666 888999999999988766665555555555
Q ss_pred HHhhcCCCcEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcc
Q 027618 97 IGMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR 163 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~ 163 (221)
+ ..+.+|++++|++++. +++..+..+++.+.+.++...+.|+++|+||+|+...+...+++|+.+
T Consensus 112 l--~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~ 177 (262)
T 3def_A 112 L--VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK 177 (262)
T ss_dssp T--TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH
T ss_pred H--hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh
Confidence 4 3357899999998863 577777899999999988877779999999999875446677777763
No 5
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.85 E-value=4.1e-20 Score=145.17 Aligned_cols=142 Identities=23% Similarity=0.326 Sum_probs=103.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
....+|+++|++|+|||||+|+|++....... ...+.|..+....... .+..+.+|||||+.++..........+..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 34689999999999999999999998753332 2233444444455555 788999999999987655444444444333
Q ss_pred HHhhcCCCcEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhc
Q 027618 97 IGMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~ 162 (221)
+ ..+.+|+++||++++. +++..+..+++.+.+.++...+.|+++|+||+|....++..+++|+.
T Consensus 115 ~--~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~ 179 (270)
T 1h65_A 115 L--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFS 179 (270)
T ss_dssp T--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHH
T ss_pred h--hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHH
Confidence 2 2457899999998863 57777889999999888877667999999999987633446667665
No 6
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.80 E-value=2.2e-18 Score=137.14 Aligned_cols=125 Identities=22% Similarity=0.230 Sum_probs=93.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
...|+++|++|+|||||+|+|++........ ..++|.........+ .+.++.+|||||+.++. ..+.+.+.....
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~-~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~---~~l~~~~~~~~~ 81 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPM---DALGEFMDQEVY 81 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCC---SHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecC-CCCceeEEEEEEEEe-CCcEEEEecCccccchh---hHHHHHHHHHHH
Confidence 4679999999999999999999987643221 223344443334444 78899999999998643 244555667777
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.+++.+|++++|+|++++++..+..+++.+.+..+ ..|+++|+||+|+..
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~---~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVG---KVPILLVGNKLDAAK 131 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGCS
T ss_pred HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcC---CCCEEEEEECcccCC
Confidence 78899999999999988888887766666665321 248999999999876
No 7
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.80 E-value=4.9e-18 Score=129.98 Aligned_cols=165 Identities=14% Similarity=0.053 Sum_probs=98.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
.....+|+++|++|+|||||+|+|++...... ...+.|.........+ .+..+.+|||||..+.......... ..
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~--~~ 100 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIE--MT 100 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHH--HH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHH--HH
Confidence 35569999999999999999999999875422 2233455555555555 6788999999999764322211110 11
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChh------hHHHHhcccC--Cc
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDE------TLEDYLGREC--PK 167 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~------~~~~~l~~~~--~~ 167 (221)
.+......+|++++|+|++++.+.....+..++..........|+++|+||+|+...... ...++..... ..
T Consensus 101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (228)
T 2qu8_A 101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIK 180 (228)
T ss_dssp HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEE
T ss_pred HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCce
Confidence 222335677999999999866554333333444433222123489999999998753211 2334444221 34
Q ss_pred hhhhhHHHHHhHHHHHHh
Q 027618 168 PLKKGATKLRDQQFEVDS 185 (221)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~ 185 (221)
.+..++....++.+.++.
T Consensus 181 ~~~~SA~~g~gi~~l~~~ 198 (228)
T 2qu8_A 181 FSSFSTLTGVGVEQAKIT 198 (228)
T ss_dssp EEECCTTTCTTHHHHHHH
T ss_pred EEEEecccCCCHHHHHHH
Confidence 555666666666666665
No 8
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.80 E-value=1e-18 Score=139.64 Aligned_cols=129 Identities=19% Similarity=0.295 Sum_probs=96.2
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC-CceEEEEeCCCCCCCCCCchHHHHH
Q 027618 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKE 92 (221)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~ 92 (221)
+++.+...|+++|.+|||||||+|+|+|....... ...++|.......... . +..+.+|||||+.++. ......+.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s-~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~-~~~~l~~~ 81 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIIS-PKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPK-KSDVLGHS 81 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCC-TTCHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccC-CCCCceeeEEEEEEec-CCCCeEEEEECcCCCccc-cchhHHHH
Confidence 34555689999999999999999999998864332 2334555555555555 5 8899999999998754 22345666
Q ss_pred HHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHH-HHHHHHHhcccccccEEEEEecCCCC
Q 027618 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKKIFDYMIVVFTGGDEL 150 (221)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (221)
+...+..++..+|++++|+|+++..+..+... ++.+.. ...|+++|+||+|+.
T Consensus 82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 82 MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKI 135 (308)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGS
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCC
Confidence 76777777788899999999998888887655 655554 134899999999987
No 9
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.79 E-value=2e-18 Score=131.38 Aligned_cols=131 Identities=12% Similarity=0.172 Sum_probs=91.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCch--HHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEI 93 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~ 93 (221)
....++|+++|.+|+|||||+|+|++...........+.|............+..+.+|||||+.+...... .....+
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 345689999999999999999999998632122233345555555555422567899999999876433222 222333
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..........+|++++|+|+.+.++..+..+++.+.+. ..|+++|+||+|+..
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~-----~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT-----GKPIHSLLTKCDKLT 158 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG-----CCCEEEEEECGGGSC
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEeccccCC
Confidence 33333345667999999999988888888877777651 347999999999886
No 10
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.79 E-value=2.2e-18 Score=126.62 Aligned_cols=153 Identities=18% Similarity=0.180 Sum_probs=96.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
.....+|+++|++|+|||||+|+|++...... ...+.+.......+.+ .+ ..+.+|||||...+.....
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~------ 76 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTITS------ 76 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---C--CTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSCCG------
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCc--cCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhhHH------
Confidence 34568999999999999999999998775422 2233344444444545 55 5788999999765443322
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchh
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPL 169 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l 169 (221)
..++.+|++++|+|++++.+... ..++..+..... ..|+++|+||+|+.... ......+........+
T Consensus 77 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (181)
T 3tw8_B 77 -----TYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLF 148 (181)
T ss_dssp -----GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred -----HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEE
Confidence 46688899999999986433333 345555544322 34899999999976421 2233444433233445
Q ss_pred hhhHHHHHhHHHHHHh
Q 027618 170 KKGATKLRDQQFEVDS 185 (221)
Q Consensus 170 ~~~~~~~~~~~~~~~~ 185 (221)
..++....++.+.++.
T Consensus 149 ~~Sa~~~~gi~~l~~~ 164 (181)
T 3tw8_B 149 ETSAKENVNVEEMFNC 164 (181)
T ss_dssp ECBTTTTBSHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 5566655556555554
No 11
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.79 E-value=5.6e-18 Score=124.25 Aligned_cols=127 Identities=17% Similarity=0.236 Sum_probs=87.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
....+|+++|++|+|||||+|++++....... ..+.+.......+.+ .+..+.+|||||...+.....
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~--------- 73 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQE--AGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTMRA--------- 73 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSS--CCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCSCC---------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCC--CCceeEeeeEEEEEe-CCceEEEEECCCCHHHHHHHH---------
Confidence 45689999999999999999999987754322 222333333344555 778899999999876543322
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhc
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~ 162 (221)
..+..+|++++|+|+++.........+..+. .. ..|+++|+||+|+...+...+...+.
T Consensus 74 --~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~---~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~ 132 (178)
T 2lkc_A 74 --RGAQVTDIVILVVAADDGVMPQTVEAINHAK---AA--NVPIIVAINKMDKPEANPDRVMQELM 132 (178)
T ss_dssp --SSCCCCCEEEEEEETTCCCCHHHHHHHHHHG---GG--SCCEEEEEETTTSSCSCHHHHHHHHT
T ss_pred --HHHhhCCEEEEEEECCCCCcHHHHHHHHHHH---hC--CCCEEEEEECccCCcCCHHHHHHHHH
Confidence 4567889999999998766665555544332 22 34899999999987643344444443
No 12
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.78 E-value=2e-18 Score=124.54 Aligned_cols=153 Identities=23% Similarity=0.239 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
++|+++|++|+|||||+|++++....... ...+.+.........+ .+..+.+|||||...... ....+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVA-DVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDK----WEKKIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSS----CCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeecc-CCCCceecceEEEEEe-CCceEEEEECCCCCCccc----hHHHHHHHHHH
Confidence 68999999999999999999987642222 2233444455555556 777899999999886432 12333444455
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHHHhH
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQ 179 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 179 (221)
.+..+|++++|+|+.++++..+..+.+.+.+. ..|+++|+||+|+... .....++.+......+..++....++
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRK-----GKPVILVATKVDDPKH-ELYLGPLYGLGFGDPIPTSSEHARGL 149 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH-----TCCEEEEEECCCSGGG-GGGCGGGGGGSSCSCEECBTTTTBSH
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHhc-----CCCEEEEEECcccccc-hHhHHHHHhCCCCCeEEEecccCCCh
Confidence 67888999999999977887776666666552 3479999999998752 22333444322224455565555555
Q ss_pred HHHHH
Q 027618 180 QFEVD 184 (221)
Q Consensus 180 ~~~~~ 184 (221)
.+.++
T Consensus 150 ~~l~~ 154 (161)
T 2dyk_A 150 EELLE 154 (161)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 13
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.78 E-value=2.3e-18 Score=127.91 Aligned_cols=155 Identities=12% Similarity=0.066 Sum_probs=93.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
.+...+|+++|++|+|||||+|++++...........+.+ ......... ....+.+|||||...+....
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------- 88 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGID--FKVKTVYRHDKRIKLQIWDTAGQERYRTIT-------- 88 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCE--EEEEEEEETTEEEEEEEEECCSCCSSCCSG--------
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEE--EEEEEEEECCeEEEEEEEeCCCcHHHhhhH--------
Confidence 3445899999999999999999999876533222222222 222222221 23478899999987654332
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK 170 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~ 170 (221)
...+..+|++++|+|++++.+... ..++..+.+.... ..|+++|+||+|+.... .....++........+.
T Consensus 89 ---~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (189)
T 2gf9_A 89 ---TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD--NAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFE 163 (189)
T ss_dssp ---GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred ---HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEE
Confidence 256678899999999985433322 4556666554212 34899999999986421 12344444432223444
Q ss_pred hhHHHHHhHHHHHHh
Q 027618 171 KGATKLRDQQFEVDS 185 (221)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (221)
.++....++.+.++.
T Consensus 164 ~Sa~~g~gi~~l~~~ 178 (189)
T 2gf9_A 164 ASAKENINVKQVFER 178 (189)
T ss_dssp CBTTTTBSHHHHHHH
T ss_pred EECCCCCCHHHHHHH
Confidence 555555555554443
No 14
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.77 E-value=2.4e-17 Score=122.78 Aligned_cols=127 Identities=20% Similarity=0.253 Sum_probs=80.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCch--HHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEI 93 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~ 93 (221)
.....+|+++|++|+|||||+|+|++...........+.|....... .+..+.+|||||+.+...... .....+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI----INDELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE----ETTTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE----ECCcEEEEECCCCCccccCHHHHHHHHHH
Confidence 34568999999999999999999998863222222333344333322 234789999999876544322 112222
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..........+|++++|+|++++.+..+..+++++.+. ..|+++|+||+|+..
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-----GIPVIVIATKADKIP 148 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence 22222233456999999999988888877666666541 347999999999886
No 15
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.77 E-value=9.1e-18 Score=126.30 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=96.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
....+|+++|++|+|||||+|+|++........ ...+.......+.+ .+ ..+.+|||||...+....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~-------- 74 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYI--STIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTIT-------- 74 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCC--CSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCCC--------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHHHH--------
Confidence 345899999999999999999999876532221 22222233333444 43 378999999987654332
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK 170 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~ 170 (221)
...++.+|++++|+|+++..+... ..|+..+...... ..|+++|+||+|+.... .....++........+.
T Consensus 75 ---~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 149 (206)
T 2bcg_Y 75 ---SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLE 149 (206)
T ss_dssp ---GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEE
T ss_pred ---HHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEE
Confidence 246678899999999985444333 4455556554322 34899999999987532 22344455433334455
Q ss_pred hhHHHHHhHHHHHHh
Q 027618 171 KGATKLRDQQFEVDS 185 (221)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (221)
.++....++.+.++.
T Consensus 150 ~Sa~~g~gi~~l~~~ 164 (206)
T 2bcg_Y 150 TSALDSTNVEDAFLT 164 (206)
T ss_dssp CCTTTCTTHHHHHHH
T ss_pred EeCCCCCCHHHHHHH
Confidence 566555555555554
No 16
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=127.78 Aligned_cols=155 Identities=17% Similarity=0.128 Sum_probs=92.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
....+|+++|++|+|||||+|+|++.........+.+.+.......... ....+.+|||||...+...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~----------- 90 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGT-AAVKAQIWDTAGLERYRAI----------- 90 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETT-EEEEEEEEEESCCCTTCTT-----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCCchhhhhh-----------
Confidence 3458999999999999999999998765332222222222222222211 2357889999998764322
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG 172 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~ 172 (221)
....+..+|++++|+|+++..+... ..++..+.... ....|+++|+||+|+.... ......+........+..+
T Consensus 91 ~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 168 (193)
T 2oil_A 91 TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA--EATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETS 168 (193)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEC
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEe
Confidence 2234577899999999985433222 34444444332 1234899999999986421 2334444443223344455
Q ss_pred HHHHHhHHHHHHh
Q 027618 173 ATKLRDQQFEVDS 185 (221)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (221)
+....++.+.++.
T Consensus 169 a~~~~gi~~l~~~ 181 (193)
T 2oil_A 169 ALDSTNVELAFET 181 (193)
T ss_dssp TTTCTTHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 5555555555544
No 17
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.76 E-value=4.3e-18 Score=126.83 Aligned_cols=153 Identities=18% Similarity=0.156 Sum_probs=98.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
....+|+++|++|+|||||+|+|++....... ..+.+.......+.+ .+ ..+.+|||||...+...
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~--------- 81 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTI--------- 81 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCTT---------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhhh---------
Confidence 44589999999999999999999987653332 223333444444444 44 46889999997643322
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK 170 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~ 170 (221)
....++.+|++++|+|++++.+... ..++..+...... ..|+++|+||+|+.... .....++........+.
T Consensus 82 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 157 (196)
T 3tkl_A 82 --TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLE 157 (196)
T ss_dssp --HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEE
T ss_pred --HHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEE
Confidence 2245577899999999985433222 4566666554332 34899999999987532 13344454433334555
Q ss_pred hhHHHHHhHHHHHHh
Q 027618 171 KGATKLRDQQFEVDS 185 (221)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (221)
.++.....+.+.++.
T Consensus 158 ~Sa~~g~gv~~l~~~ 172 (196)
T 3tkl_A 158 TSAKNATNVEQSFMT 172 (196)
T ss_dssp ECTTTCTTHHHHHHH
T ss_pred EeCCCCCCHHHHHHH
Confidence 666666666665554
No 18
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.76 E-value=5.5e-18 Score=141.69 Aligned_cols=157 Identities=18% Similarity=0.247 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
++|+++|.+|+|||||+|+|++....... ...+.|.........| .+..+.+|||||+.... .+.....+......
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~-~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceec-CCCCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence 57999999999999999999998743222 3456677777777778 88899999999987532 11223445555666
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhH-HHHhcccCCchhhhhHHHHHh
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL-EDYLGRECPKPLKKGATKLRD 178 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~-~~~l~~~~~~~l~~~~~~~~~ 178 (221)
++..+|++++|+|+.++++..+..+.+++++. ..|+++|+||+|......... .++.+......+..|+....+
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~g 152 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-----TVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNIN 152 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-----TCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBS
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 77889999999999888998887777777653 247999999999754101122 344332222344456655555
Q ss_pred HHHHHHh
Q 027618 179 QQFEVDS 185 (221)
Q Consensus 179 ~~~~~~~ 185 (221)
+.++++.
T Consensus 153 v~~L~~~ 159 (439)
T 1mky_A 153 LDTMLET 159 (439)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 19
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.76 E-value=1.1e-17 Score=122.59 Aligned_cols=157 Identities=18% Similarity=0.129 Sum_probs=97.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
++.+|+++|++|+|||||+|+|++....... ...+.|.......+.+ .+..+.+|||||+.+.....+. ..+.. .
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~--~~~~~-~ 77 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEVER--IGIER-A 77 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHHHH--HHHHH-H
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceee-CCCCceeceeeEEEEE-CCeEEEEEECCCcccchhHHHH--HHHHH-H
Confidence 4589999999999999999999987642221 1233444444455555 6778999999998764321111 01111 2
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHHH
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLR 177 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 177 (221)
...+..+|++++|+|++++.+.....++..+.+.... ..|+++|+||+|+..... ++........+..|+....
T Consensus 78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~----~~~~~~~~~~~~~SA~~g~ 151 (172)
T 2gj8_A 78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA--KLPITVVRNKADITGETL----GMSEVNGHALIRLSARTGE 151 (172)
T ss_dssp HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT--TCCEEEEEECHHHHCCCC----EEEEETTEEEEECCTTTCT
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhccc--CCCEEEEEECccCCcchh----hhhhccCCceEEEeCCCCC
Confidence 2345678999999999877766666777777664322 348999999999754211 1111111233445665555
Q ss_pred hHHHHHHh
Q 027618 178 DQQFEVDS 185 (221)
Q Consensus 178 ~~~~~~~~ 185 (221)
++.+.++.
T Consensus 152 gv~~l~~~ 159 (172)
T 2gj8_A 152 GVDVLRNH 159 (172)
T ss_dssp THHHHHHH
T ss_pred CHHHHHHH
Confidence 55555543
No 20
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.76 E-value=4.4e-17 Score=121.08 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=86.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCch--HHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEI 93 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~ 93 (221)
.....+|+++|++|+|||||+|+|++....... ...+.|....... .+..+.+|||||+........ .....+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~t~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVS-KTPGKTRSINFYL----VNSKYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCC-SSCCCCCCEEEEE----ETTTEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCcccccc-CCCCCccCeEEEE----ECCcEEEEECCCCccccCChhhHHHHHHH
Confidence 345689999999999999999999998732222 2233333333222 345788999999865433222 123333
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..........++++++|+|+.+..+..+...++++... ..|+++|+||+|+..
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~ 147 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVK 147 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCC
Confidence 33333444677999999999878888777777777654 348999999999875
No 21
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.76 E-value=7.7e-18 Score=125.26 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=92.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
....+|+++|++|+|||||+|++++.........+ .+.......+.+ .+ ..+.+|||||...+.....
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~------- 88 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT--IGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSITR------- 88 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCCCH-------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCc--ccceeEEEEEEE-CCEEEEEEEEECCCchhhhhhHH-------
Confidence 44579999999999999999999987653322212 222222233333 33 4788999999765433222
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK 170 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~ 170 (221)
..+..+|++++|+|+++..+... ..++..+...... ..|+++|+||+|+.... .....++........+.
T Consensus 89 ----~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 162 (191)
T 2a5j_A 89 ----SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS--NMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFME 162 (191)
T ss_dssp ----HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred ----HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEE
Confidence 35567899999999985433332 4555555554222 34899999999986421 23344454432233444
Q ss_pred hhHHHHHhHHHHHHh
Q 027618 171 KGATKLRDQQFEVDS 185 (221)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (221)
.++....++.+.++.
T Consensus 163 ~Sa~~~~gi~~l~~~ 177 (191)
T 2a5j_A 163 TSAKTACNVEEAFIN 177 (191)
T ss_dssp ECTTTCTTHHHHHHH
T ss_pred EeCCCCCCHHHHHHH
Confidence 555555555555544
No 22
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.76 E-value=3.5e-18 Score=125.28 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=92.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
.....+|+++|++|+|||||+|++++...........+.+.... ..... ....+.+|||||...+.
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~l~Dt~G~~~~~----------- 78 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTR--IIEVSGQKIKLQIWDTAGQERFR----------- 78 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEE--EEEETTEEEEEEEEECTTGGGTC-----------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEE--EEEECCeEEEEEEEECCCChHhh-----------
Confidence 34568999999999999999999998765322222222222222 22231 23478899999965432
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK 170 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~ 170 (221)
......++.+|++++|+|+++..+... ..++..+...... ..|+++|+||+|+.... ...+.++........+.
T Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (179)
T 1z0f_A 79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLE 156 (179)
T ss_dssp HHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred hhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence 122334456799999999985533332 4555666554322 34899999999986421 23445555433333444
Q ss_pred hhHHHHHhHHHHHH
Q 027618 171 KGATKLRDQQFEVD 184 (221)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (221)
.++....++.+.++
T Consensus 157 ~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 157 ASAKTGENVEDAFL 170 (179)
T ss_dssp CCTTTCTTHHHHHH
T ss_pred EeCCCCCCHHHHHH
Confidence 55555555554444
No 23
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.75 E-value=3.1e-17 Score=122.67 Aligned_cols=150 Identities=13% Similarity=0.127 Sum_probs=93.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC----------------------------
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG---------------------------- 68 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---------------------------- 68 (221)
....+|+++|++|+|||||+|+|++........ ...........+.+ .+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTN--TTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCC--CCCSCEEEEEEEET-TC----------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcC--ccccceeEEEEEEe-cCcccccccccccccccccccccccccccc
Confidence 345899999999999999999999886532211 11111222222222 22
Q ss_pred -----------ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccc
Q 027618 69 -----------QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKI 136 (221)
Q Consensus 69 -----------~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~ 136 (221)
..+.+|||||...+... ....++.+|++++|+|++++.+... ..++..+.+..+
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--- 147 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASI-----------VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--- 147 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTT-----------HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---
T ss_pred ccccccCccceeEEEEEECCCcHHHHHH-----------HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC---
Confidence 67899999997654321 2245577899999999985544333 445555555422
Q ss_pred cccEEEEEecCCCCCC---ChhhHHHHhcccCCchhhhhHHHHHhHHHHHHh
Q 027618 137 FDYMIVVFTGGDELED---NDETLEDYLGRECPKPLKKGATKLRDQQFEVDS 185 (221)
Q Consensus 137 ~~~~ivv~tk~D~~~~---~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 185 (221)
.|+++|+||+| ... ....+.+++.......+..++.....+.+.++.
T Consensus 148 -~piilv~NK~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 197 (208)
T 3clv_A 148 -YIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYM 197 (208)
T ss_dssp -CEEEEEEECTT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred -CcEEEEEECCC-cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence 58999999999 421 124556666543344555566655555555554
No 24
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.75 E-value=4.6e-18 Score=123.73 Aligned_cols=151 Identities=14% Similarity=0.109 Sum_probs=89.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
...+|+++|++|+|||||+|++++.......... .+.........+ .+ ..+.+|||||..++. .
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~ 70 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITT--LGASFLTKKLNI-GGKRVNLAIWDTAGQERFH-----------A 70 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCC--CSCEEEEEEEES-SSCEEEEEEEECCCC----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCc--cceEEEEEEEEE-CCEEEEEEEEECCCcHhhh-----------h
Confidence 4589999999999999999999977653222212 222222223333 33 368899999965432 2
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhh
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKK 171 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~ 171 (221)
.....++.+|++++|+|+++..+... ..++..+...... ..|+++|+||+|+.... .....++........+..
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (170)
T 1z08_A 71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHT 148 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG--GSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEe
Confidence 22346678899999999985443333 4566666655433 34899999999986421 234455554322334445
Q ss_pred hHHHHHhHHHHHH
Q 027618 172 GATKLRDQQFEVD 184 (221)
Q Consensus 172 ~~~~~~~~~~~~~ 184 (221)
++....++.+.++
T Consensus 149 Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 149 SAKQNKGIEELFL 161 (170)
T ss_dssp BTTTTBSHHHHHH
T ss_pred cCCCCCCHHHHHH
Confidence 5554444444444
No 25
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.75 E-value=4.6e-18 Score=123.61 Aligned_cols=150 Identities=12% Similarity=0.094 Sum_probs=89.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
..+|+++|++|+|||||+|++++....... ..+.+.........+ .+ ..+.+|||||...+....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~---------- 69 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTIT---------- 69 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCC----------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhhH----------
Confidence 479999999999999999999987653222 122222233333444 33 468899999976543322
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhhhhH
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKKGA 173 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~~~~ 173 (221)
...++.+|++++|+|++++.+... ..++..+...... ..|+++|+||+|+.... .....++.+......+..++
T Consensus 70 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (170)
T 1g16_A 70 -TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSA 146 (170)
T ss_dssp -HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBT
T ss_pred -HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEEC
Confidence 234567899999999985433322 4566666654322 34899999999984311 23344444432233444555
Q ss_pred HHHHhHHHHHH
Q 027618 174 TKLRDQQFEVD 184 (221)
Q Consensus 174 ~~~~~~~~~~~ 184 (221)
....++.+.++
T Consensus 147 ~~~~gv~~l~~ 157 (170)
T 1g16_A 147 KNDDNVNEIFF 157 (170)
T ss_dssp TTTBSHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 54444544444
No 26
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.75 E-value=3.2e-18 Score=124.47 Aligned_cols=152 Identities=16% Similarity=0.094 Sum_probs=90.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
+..+|+++|++|+|||||+|++++...........+.+.... ...+. ....+.+|||||...+. ..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dt~G~~~~~-----------~~ 71 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTK--TVQYQNELHKFLIWDTAGLERFR-----------AL 71 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEE--EEEETTEEEEEEEEEECCSGGGG-----------GG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEE--EEEECCeEEEEEEEcCCCchhhh-----------cc
Confidence 458999999999999999999998775332222222222222 22231 23578899999985432 11
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG 172 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~ 172 (221)
....++.+|++++|+|+++..+... ..++..+...... ..|+++|+||+|+.... ......+........+..+
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1z0j_A 72 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETS 149 (170)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECB
T ss_pred cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEe
Confidence 2234577899999999985544333 4566666654222 34799999999986421 2233444433223344445
Q ss_pred HHHHHhHHHHHH
Q 027618 173 ATKLRDQQFEVD 184 (221)
Q Consensus 173 ~~~~~~~~~~~~ 184 (221)
+....++.+.++
T Consensus 150 a~~~~~i~~l~~ 161 (170)
T 1z0j_A 150 AKNAININELFI 161 (170)
T ss_dssp TTTTBSHHHHHH
T ss_pred CCCCcCHHHHHH
Confidence 544444444333
No 27
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.75 E-value=1.1e-17 Score=125.56 Aligned_cols=153 Identities=10% Similarity=0.060 Sum_probs=91.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
...+|+++|++|+|||||+|++++...........+. ......+... ....+.+|||||...+ ...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------~~~ 73 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGI--DFKVKTIYRNDKRIKLQIWDTAGLERY-----------RTI 73 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSE--EEEEEEEEETTEEEEEEEEEECCSGGG-----------HHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccce--eEEEEEEEECCeEEEEEEEECCCchhh-----------cch
Confidence 3489999999999999999999988753322222222 2222223331 2347899999997532 123
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG 172 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~ 172 (221)
....+..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|+.... .....++........+..+
T Consensus 74 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (203)
T 1zbd_A 74 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEAS 151 (203)
T ss_dssp HHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--SSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECB
T ss_pred HHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEE
Confidence 4456678899999999985433322 445555554321 234899999999986532 2233444443222344455
Q ss_pred HHHHHhHHHHHHh
Q 027618 173 ATKLRDQQFEVDS 185 (221)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (221)
+....++.+.++.
T Consensus 152 a~~~~gi~~l~~~ 164 (203)
T 1zbd_A 152 AKDNINVKQTFER 164 (203)
T ss_dssp TTTTBSSHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 5444444444443
No 28
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.75 E-value=6.1e-18 Score=124.37 Aligned_cols=154 Identities=19% Similarity=0.156 Sum_probs=92.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
.....+|+++|++|+|||||+|++++.........+.+.+.. .....+. ....+.+|||||...+.
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~----------- 75 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFF--SQTLAVNDATVKFEIWDTAGQERYH----------- 75 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEE--EEEEEETTEEEEEEEEECCCSGGGG-----------
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEE--EEEEEECCEEEEEEEEeCCCChhhh-----------
Confidence 345589999999999999999999987654332222222222 2223331 23478999999965422
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK 170 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~ 170 (221)
......++.+|++++|+|+++..+... ..++..+...... ..|+++|+||+|+.... ...+.++........+.
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (181)
T 2efe_B 76 SLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP--NMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFME 153 (181)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEE
T ss_pred hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEE
Confidence 112245577899999999985544333 5566666554222 34799999999986432 23445555432233444
Q ss_pred hhHHHHHhHHHHHH
Q 027618 171 KGATKLRDQQFEVD 184 (221)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (221)
.++.....+.+.++
T Consensus 154 ~Sa~~g~gi~~l~~ 167 (181)
T 2efe_B 154 TSAKTATNVKEIFY 167 (181)
T ss_dssp CCSSSCTTHHHHHH
T ss_pred EECCCCCCHHHHHH
Confidence 45544444444443
No 29
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.75 E-value=3.9e-18 Score=129.49 Aligned_cols=153 Identities=15% Similarity=0.095 Sum_probs=98.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
+..+|+++|.+|+|||||+++++...+......+.+..... ...... ....+.+|||+|...+.. .
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~--k~~~~~~~~v~l~iwDtaGqe~~~~-----------l 78 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS--KTMYLEDRTIRLQLWDTAGLERFRS-----------L 78 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEE--EEEECSSCEEEEEEECCSCTTTCGG-----------G
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEE--EEEEecceEEEEEEEECCCchhhhh-----------H
Confidence 45899999999999999999998766532222121212112 222221 234678999999876532 2
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG 172 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~ 172 (221)
...+++.++++++|++++++-+... ..|+..+.+..+.. .|+++|+||+|+.... ....+++.++..-.++..|
T Consensus 79 ~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~S 156 (216)
T 4dkx_A 79 IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETS 156 (216)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEB
T ss_pred HHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEe
Confidence 2356688899999999986555444 67777777765544 3899999999976421 2345556655444566677
Q ss_pred HHHHHhHHHHHHh
Q 027618 173 ATKLRDQQFEVDS 185 (221)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (221)
+....++.+.++.
T Consensus 157 Aktg~nV~e~F~~ 169 (216)
T 4dkx_A 157 AKAGYNVKQLFRR 169 (216)
T ss_dssp TTTTBSHHHHHHH
T ss_pred CCCCcCHHHHHHH
Confidence 7777777777765
No 30
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.75 E-value=2.2e-17 Score=121.50 Aligned_cols=152 Identities=17% Similarity=0.123 Sum_probs=92.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
...+|+++|++|+|||||+|++++........ + .+.......... .+ ..+.+|||||...+.....
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~-~--t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~-------- 72 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYD-P--TIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIFPQ-------- 72 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCC-T--TCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCCCCG--------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCC-C--CccccEEEEEEE-CCEEEEEEEEeCCCchhhhHHHH--------
Confidence 45899999999999999999999665422211 1 111111223333 44 4678999999877543332
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhh
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKK 171 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~ 171 (221)
..++.+|++++|+|++++.+... ..++..+.+.... ...|+++|+||+|+.... .....++........+..
T Consensus 73 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (181)
T 3t5g_A 73 ---TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLES 148 (181)
T ss_dssp ---GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEC
T ss_pred ---HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEE
Confidence 45678899999999985433333 3455555444332 234899999999985422 234455555433345556
Q ss_pred hHHHHHhHHHHHHh
Q 027618 172 GATKLRDQQFEVDS 185 (221)
Q Consensus 172 ~~~~~~~~~~~~~~ 185 (221)
++.....+.+.++.
T Consensus 149 Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 149 SAKENQTAVDVFRR 162 (181)
T ss_dssp CTTSHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHH
Confidence 66655555555554
No 31
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=125.24 Aligned_cols=157 Identities=17% Similarity=0.108 Sum_probs=91.2
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
+.....+|+++|.+|+|||||+|+|++........ +.............. ....+.+|||||...+.....
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~------- 90 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYD-PTVENTYSKIVTLGK-DEFHLHLVDTAGQDEYSILPY------- 90 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCC-CCSEEEEEEEEC-----CEEEEEEEECCCCTTCCCCG-------
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCC-CccceEEEEEEEECC-EEEEEEEEECCCccchHHHHH-------
Confidence 34567899999999999999999999877542221 111111122122222 456789999999876543322
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK 170 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~ 170 (221)
..+..+|++++|+|+++..+... ..++..+.+.... ...|+++|+||+|+.... ......+........+.
T Consensus 91 ----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 165 (201)
T 3oes_A 91 ----SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGK-TRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFME 165 (201)
T ss_dssp ----GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred ----HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEE
Confidence 46678899999999985433322 3444444333221 234899999999976421 22334444433334455
Q ss_pred hhHHHHHhHHHHHHh
Q 027618 171 KGATKLRDQQFEVDS 185 (221)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (221)
.++.....+.+.++.
T Consensus 166 ~Sa~~~~~v~~l~~~ 180 (201)
T 3oes_A 166 SSARENQLTQGIFTK 180 (201)
T ss_dssp CCTTCHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHH
Confidence 666655566655554
No 32
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.75 E-value=9.4e-18 Score=123.98 Aligned_cols=153 Identities=14% Similarity=0.097 Sum_probs=95.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
....+|+++|++|+|||||+|++++....... ....+.........+ .+ ..+.+|||||...+ .
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~ 73 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS--NHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERF-----------R 73 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------H
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHH-----------H
Confidence 44589999999999999999999987653222 222232333333444 44 47889999996531 1
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK 170 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~ 170 (221)
......+..+|++++|+|++++.+... ..++..+...... ..|+++|+||+|+.... .....++........+.
T Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 151 (186)
T 2bme_A 74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLDADREVTFLEASRFAQENELMFLE 151 (186)
T ss_dssp HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence 334566788999999999985433322 4555555554322 34899999999986321 23344444433333445
Q ss_pred hhHHHHHhHHHHHHh
Q 027618 171 KGATKLRDQQFEVDS 185 (221)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (221)
.++....++.+.++.
T Consensus 152 ~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 152 TSALTGENVEEAFVQ 166 (186)
T ss_dssp CCTTTCTTHHHHHHH
T ss_pred ecCCCCCCHHHHHHH
Confidence 565555555555554
No 33
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=3e-17 Score=123.91 Aligned_cols=154 Identities=12% Similarity=0.094 Sum_probs=92.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
.....+|+++|++|+|||||+|++++....... ..+.+.......+.+ .+ ..+.+|||||...+....
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~------- 86 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTIT------- 86 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSS--SCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCCC-------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCccc--CCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHH-------
Confidence 345689999999999999999999977653222 222233333344444 44 578999999976543221
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhh
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLK 170 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~ 170 (221)
...+..+|++++|+|+++..+... ..++..+...... ..|+++|+||+|+.... .....++........+.
T Consensus 87 ----~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 160 (213)
T 3cph_A 87 ----TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIE 160 (213)
T ss_dssp ----HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTT--CSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEE
T ss_pred ----HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEE
Confidence 234577899999999985433322 4566666654332 34899999999984321 23344444332223444
Q ss_pred hhHHHHHhHHHHHHh
Q 027618 171 KGATKLRDQQFEVDS 185 (221)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (221)
.++.....+.+.++.
T Consensus 161 ~Sa~~~~gi~~l~~~ 175 (213)
T 3cph_A 161 SSAKNDDNVNEIFFT 175 (213)
T ss_dssp CBTTTTBSSHHHHHH
T ss_pred EeCCCCCCHHHHHHH
Confidence 555444444444443
No 34
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.74 E-value=1.1e-17 Score=123.45 Aligned_cols=153 Identities=14% Similarity=0.087 Sum_probs=74.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
....+|+++|++|+|||||+|++++....... ..+.+.......+.+ .+ ..+.+|||||...+.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----------- 71 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTF--ISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFR----------- 71 (183)
T ss_dssp SEEEEEEEECCCCC----------------CH--HHHHCEEEEEEEEEE-TTEEEEEEEEEC------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCcccceeEEEEEEE-CCEEEEEEEEcCCCChhhh-----------
Confidence 34589999999999999999999976542211 111222233333444 44 578899999976432
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK 170 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~ 170 (221)
......++.+|++++|+|++++.+... ..|+..+.+.... ..|+++|+||+|+.... .....++........+.
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 149 (183)
T 2fu5_C 72 TITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA--DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFME 149 (183)
T ss_dssp --CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEE
T ss_pred hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEE
Confidence 222356678899999999985443332 3455555554222 34899999999986421 23445555433334555
Q ss_pred hhHHHHHhHHHHHHh
Q 027618 171 KGATKLRDQQFEVDS 185 (221)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (221)
.++....++.+.++.
T Consensus 150 ~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 150 TSAKANINVENAFFT 164 (183)
T ss_dssp CCC---CCHHHHHHH
T ss_pred EeCCCCCCHHHHHHH
Confidence 666666666665554
No 35
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=8.1e-18 Score=125.30 Aligned_cols=155 Identities=15% Similarity=0.064 Sum_probs=94.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
....+|+++|++|+|||||+|++++...........+.+.......... ....+.+|||||...+.. .
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~ 88 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN-ELHKFLIWDTAGQERFHS-----------L 88 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSS-SEEEEEEEEECCSGGGGG-----------G
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCC-EEEEEEEEcCCCchhhHh-----------h
Confidence 4568999999999999999999998764322222223232222222222 345789999999754321 1
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG 172 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~ 172 (221)
....+..+|++++|+|+++..+... ..++..+.+.... ..|+++|+||+|+.... ...+.++........+..+
T Consensus 89 ~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 166 (192)
T 2fg5_A 89 APMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE--NIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETS 166 (192)
T ss_dssp THHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECB
T ss_pred hHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEe
Confidence 2235567899999999985544333 4566666554222 34899999999986311 2345555543333344455
Q ss_pred HHHHHhHHHHHHh
Q 027618 173 ATKLRDQQFEVDS 185 (221)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (221)
+....++.+.++.
T Consensus 167 a~~~~gi~~l~~~ 179 (192)
T 2fg5_A 167 AKNAINIEELFQG 179 (192)
T ss_dssp TTTTBSHHHHHHH
T ss_pred CCCCcCHHHHHHH
Confidence 5555555544443
No 36
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.74 E-value=4e-18 Score=123.86 Aligned_cols=152 Identities=16% Similarity=0.111 Sum_probs=89.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
...+|+++|++|+|||||+|++++...........+.+... ....+. ....+.+|||||...+. ..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~~~-----------~~ 71 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLT--QTVCLDDTTVKFEIWDTAGQERYH-----------SL 71 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEE--EEEEETTEEEEEEEEEECCSGGGG-----------GG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEE--EEEEECCEEEEEEEEeCCCcHHhh-----------hh
Confidence 35899999999999999999999766533222222222222 222221 24578899999975422 12
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG 172 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~ 172 (221)
....+..+|++++|+|++++.+... ..++..+...... ..|+++|+||+|+.... .....++........+..+
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1r2q_A 72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP--NIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETS 149 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEe
Confidence 2345577899999999985543333 4455555554222 34789999999976421 2334444443223344455
Q ss_pred HHHHHhHHHHHH
Q 027618 173 ATKLRDQQFEVD 184 (221)
Q Consensus 173 ~~~~~~~~~~~~ 184 (221)
+....++.+.++
T Consensus 150 a~~g~gi~~l~~ 161 (170)
T 1r2q_A 150 AKTSMNVNEIFM 161 (170)
T ss_dssp TTTCTTHHHHHH
T ss_pred CCCCCCHHHHHH
Confidence 554444444443
No 37
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=4e-18 Score=123.86 Aligned_cols=117 Identities=21% Similarity=0.182 Sum_probs=76.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
..+|+++|++|+|||||+|++++...........+.+ .......+ .+ ..+.+|||||...+. ..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~D~~G~~~~~-----------~~ 68 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAA--FLTQRVTI-NEHTVKFEIWDTAGQERFA-----------SL 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEE--EEEEEEEE-TTEEEEEEEEEECCSGGGG-----------GG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEEEE-CCEEEEEEEEECCCChhhh-----------hh
Confidence 4789999999999999999999876532222222222 22223333 33 478899999965422 12
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....++.+|++++|+|++++.+... ..++..+.+.... ..|+++|+||+|+..
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~ 122 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--DIIIALVGNKIDXLQ 122 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGG
T ss_pred hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCccc
Confidence 2345577899999999985443333 4555555554322 347999999999864
No 38
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.74 E-value=3.6e-17 Score=122.94 Aligned_cols=156 Identities=12% Similarity=0.102 Sum_probs=95.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
.....+|+++|++|+|||||+|+|++....... ....+.......+.+ .+ ..+.+|||||...+....
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~------- 74 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQSLG------- 74 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGSCSC-------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHhH-------
Confidence 345689999999999999999999987653222 122223333333333 33 478999999976543222
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCCC--hhhHHHHhc-ccCCc
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELEDN--DETLEDYLG-RECPK 167 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~--~~~~~~~l~-~~~~~ 167 (221)
...+..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|+.... ...+..+.. .....
T Consensus 75 ----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (207)
T 1vg8_A 75 ----VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIP 150 (207)
T ss_dssp ----CGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCC
T ss_pred ----HHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCce
Confidence 245678899999999985433322 4555555554321 1234899999999987421 234455544 22334
Q ss_pred hhhhhHHHHHhHHHHHHh
Q 027618 168 PLKKGATKLRDQQFEVDS 185 (221)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~ 185 (221)
.+..++....++.+.++.
T Consensus 151 ~~~~Sa~~g~gi~~l~~~ 168 (207)
T 1vg8_A 151 YFETSAKEAINVEQAFQT 168 (207)
T ss_dssp EEECBTTTTBSHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHH
Confidence 555666655556555554
No 39
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.74 E-value=1.7e-17 Score=123.21 Aligned_cols=154 Identities=12% Similarity=0.052 Sum_probs=93.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEeeC-----------CceEEEEeCCCCCCCCC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKD-----------GQVVNVIDTPGLFDFSA 84 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~-----------~~~~~liDtPG~~~~~~ 84 (221)
....+|+++|++|+|||||+|++++.........+.+ .... ...... . ...+.++||||...+
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~-- 83 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVG--IDFREKRVVYR-ANGPDGAVGRGQRIHLQLWDTAGLERF-- 83 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCS--EEEEEEEEEEC-TTSCCCSSCCCEEEEEEEEEECCSGGG--
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccc--eeeeeEEEEEe-cCCcccccccCcEEEEEEEeCCCcHHH--
Confidence 4458999999999999999999998665322111111 1111 222323 2 247899999997531
Q ss_pred CchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHH
Q 027618 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDY 160 (221)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~ 160 (221)
.......++.+|++++|+|+++..+... ..++..+...... ...|+++|+||+|+.... ...+.++
T Consensus 84 ---------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~ 153 (195)
T 3bc1_A 84 ---------RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS-ENPDIVLCGNKSDLEDQRAVKEEEAREL 153 (195)
T ss_dssp ---------HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS-SSCCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred ---------HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccccCHHHHHHH
Confidence 1334456788899999999985444333 4555555554321 234899999999986421 2334444
Q ss_pred hcccCCchhhhhHHHHHhHHHHHHh
Q 027618 161 LGRECPKPLKKGATKLRDQQFEVDS 185 (221)
Q Consensus 161 l~~~~~~~l~~~~~~~~~~~~~~~~ 185 (221)
........+..++.....+.+.++.
T Consensus 154 ~~~~~~~~~~~Sa~~~~~v~~l~~~ 178 (195)
T 3bc1_A 154 AEKYGIPYFETSAANGTNISHAIEM 178 (195)
T ss_dssp HHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred HHHcCCCEEEEECCCCCCHHHHHHH
Confidence 4432234444555555555555544
No 40
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.74 E-value=3.5e-18 Score=127.35 Aligned_cols=157 Identities=13% Similarity=0.135 Sum_probs=90.5
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHH
Q 027618 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVG 90 (221)
Q Consensus 13 ~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~ 90 (221)
+.+.....+|+++|.+|+|||||+|+|++........ ...+.......+.+ .+ ..+.+|||||...+ .
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~----~--- 89 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACK--STVGVDFKIKTVEL-RGKKIRLQIWDTAGQERF----N--- 89 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGG----H---
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCC--CccceeEEEEEEEE-CCeEEEEEEEeCCCcHHH----H---
Confidence 3444556899999999999999999999876532221 22223333334444 44 46889999996532 1
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhccc-C
Q 027618 91 KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRE-C 165 (221)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~-~ 165 (221)
......+..+|++++|+|+++..+... ..|++.+...... ..|+++|+||+|+.... ....+++.... .
T Consensus 90 ----~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~ 163 (192)
T 2il1_A 90 ----SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCETDREITRQQGEKFAQQITG 163 (192)
T ss_dssp ----HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTT
T ss_pred ----HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCHHHHHHHHHhcCC
Confidence 112233445699999999986544433 4555556554222 34899999999986421 22344554431 2
Q ss_pred CchhhhhHHHHHhHHHHHHh
Q 027618 166 PKPLKKGATKLRDQQFEVDS 185 (221)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~ 185 (221)
...+..++....++.+.++.
T Consensus 164 ~~~~~~SA~~g~gi~~l~~~ 183 (192)
T 2il1_A 164 MRFCEASAKDNFNVDEIFLK 183 (192)
T ss_dssp CEEEECBTTTTBSHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHH
Confidence 33445555555555554443
No 41
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.74 E-value=6.6e-17 Score=120.65 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=79.7
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 027618 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
.+.....+|+++|.+|+|||||+|++++......... .|.......+.. .+..+.+|||||...+.
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~---~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~---------- 77 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHIT---ATVGYNVETFEK-GRVAFTVFDMGGAKKFR---------- 77 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCC---CCSSEEEEEEEE-TTEEEEEEEECCSGGGG----------
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccc---cccceeEEEEEe-CCEEEEEEECCCCHhHH----------
Confidence 4456678999999999999999999999876442111 122233444555 78899999999986532
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc------ccccEEEEEecCCCCC
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK------IFDYMIVVFTGGDELE 151 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~------~~~~~ivv~tk~D~~~ 151 (221)
......+..+|++++|+|+++..+... ..++..+.+..... ...|+++|+||+|+..
T Consensus 78 -~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 141 (199)
T 4bas_A 78 -GLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG 141 (199)
T ss_dssp -GGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred -HHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence 222356788999999999986544333 24444443321110 1458999999999876
No 42
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.73 E-value=1.6e-17 Score=121.91 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=91.8
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHH
Q 027618 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGK 91 (221)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~ 91 (221)
.+.....+|+++|++|+|||||+|++++....... .+.+.........+ .+ ..+.+|||||...+.....
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~---- 75 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDY---DPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMRE---- 75 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSC---CTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCHH----
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCcccc---CCCcCceEEEEEEE-CCEEEEEEEEECCCchhhHHHHH----
Confidence 34556689999999999999999999987542221 11122222233333 43 4688999999876433221
Q ss_pred HHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCc
Q 027618 92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPK 167 (221)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~ 167 (221)
..+..+|++++|+++++..+... ..++..+...... ...|+++|+||+|+.... ......+.......
T Consensus 76 -------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~ 147 (181)
T 2fn4_A 76 -------QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLESQRQVPRSEASAFGASHHVA 147 (181)
T ss_dssp -------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE
T ss_pred -------HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCe
Confidence 22344699999999985433222 3455555333222 234899999999986421 22334444332233
Q ss_pred hhhhhHHHHHhHHHHHHh
Q 027618 168 PLKKGATKLRDQQFEVDS 185 (221)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~ 185 (221)
.+..++....++.+.++.
T Consensus 148 ~~~~Sa~~~~gv~~l~~~ 165 (181)
T 2fn4_A 148 YFEASAKLRLNVDEAFEQ 165 (181)
T ss_dssp EEECBTTTTBSHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHH
Confidence 445555555555555544
No 43
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.73 E-value=2.5e-17 Score=120.98 Aligned_cols=157 Identities=11% Similarity=0.088 Sum_probs=89.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
.....+|+++|++|+|||||+|++++.......... .+.......+.+. ....+.+|||||...+.
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------- 72 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKAT--IGADFLTKEVTVDGDKVATMQVWDTAGQERFQ---------- 72 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----CCCSCEEEEECCSSSCCEEEEEECCC----------------
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCc--cceEEEEEEEEEcCCcEEEEEEEECCCChHhh----------
Confidence 345689999999999999999999987653222111 1222222333331 23578999999965422
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCC----ChhhHHHHhc-ccC
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELED----NDETLEDYLG-REC 165 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~----~~~~~~~~l~-~~~ 165 (221)
......++.+|++++|+|+++..+... ..++..+...... ....|+++|+||+|+... ......++.. ...
T Consensus 73 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~ 151 (182)
T 1ky3_A 73 -SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGD 151 (182)
T ss_dssp -----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTS
T ss_pred -hhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCC
Confidence 233456788899999999985443332 4555666554331 123489999999998531 1233444444 122
Q ss_pred CchhhhhHHHHHhHHHHHHh
Q 027618 166 PKPLKKGATKLRDQQFEVDS 185 (221)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~ 185 (221)
...+..++....++.+.++.
T Consensus 152 ~~~~~~Sa~~~~gi~~l~~~ 171 (182)
T 1ky3_A 152 IPLFLTSAKNAINVDTAFEE 171 (182)
T ss_dssp CCEEEEBTTTTBSHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHH
Confidence 33455566555555555544
No 44
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.73 E-value=2.6e-17 Score=120.56 Aligned_cols=155 Identities=15% Similarity=0.074 Sum_probs=95.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
....+|+++|++|+|||||+|++++......... ..+.........+ .+ ..+.+|||||...+ .
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~ 70 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFH--TIGVEFLNKDLEV-DGHFVTMQIWDTAGQERF-----------R 70 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGG-----------H
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ceeeeEEEEEEEE-CCEEEEEEEEeCCCchhh-----------h
Confidence 3458999999999999999999997764322211 1222222333334 44 47899999996431 2
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCC--ChhhHHHHhc-ccCCch
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELED--NDETLEDYLG-RECPKP 168 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~--~~~~~~~~l~-~~~~~~ 168 (221)
......++.+|++++|+++++..+... ..++..+...... ....|+++|+||+|+... ....+.++.. ......
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 150 (177)
T 1wms_A 71 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPY 150 (177)
T ss_dssp HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCE
T ss_pred hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceE
Confidence 334466788899999999985443332 4566666655331 123489999999998632 1334555554 223345
Q ss_pred hhhhHHHHHhHHHHHHh
Q 027618 169 LKKGATKLRDQQFEVDS 185 (221)
Q Consensus 169 l~~~~~~~~~~~~~~~~ 185 (221)
+..++....++.+.++.
T Consensus 151 ~~~Sa~~~~gi~~l~~~ 167 (177)
T 1wms_A 151 FETSAKDATNVAAAFEE 167 (177)
T ss_dssp EECCTTTCTTHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHH
Confidence 55666655555555543
No 45
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.73 E-value=1.2e-17 Score=121.11 Aligned_cols=149 Identities=18% Similarity=0.066 Sum_probs=88.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
...+|+++|++|+|||||+|++++......... ..+.........+ . ...+.+|||||...+....
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~--------- 71 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKK--TIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAIT--------- 71 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSC--CCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCC---------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCC--ceEEEEEEEEEEE-CCEEEEEEEEcCCCcHhHHHHH---------
Confidence 458999999999999999999998764322111 1122222233333 3 3478899999976543322
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhh
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKK 171 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~ 171 (221)
...++.+|++++|++++++.+... ..++..+.... ...|+++|+||+|+.... ...+.++........+..
T Consensus 72 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (168)
T 1z2a_A 72 --KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRT 146 (168)
T ss_dssp --HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEC
T ss_pred --HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEE
Confidence 234567899999999985433222 44555555543 234899999999976421 233444444322233444
Q ss_pred hHHHHHhHHHHH
Q 027618 172 GATKLRDQQFEV 183 (221)
Q Consensus 172 ~~~~~~~~~~~~ 183 (221)
++....++.+.+
T Consensus 147 Sa~~~~~i~~l~ 158 (168)
T 1z2a_A 147 SVKEDLNVSEVF 158 (168)
T ss_dssp BTTTTBSSHHHH
T ss_pred ecCCCCCHHHHH
Confidence 444444444333
No 46
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.73 E-value=4.2e-17 Score=118.20 Aligned_cols=152 Identities=18% Similarity=-0.011 Sum_probs=80.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
..+|+++|++|+|||||+|++++....... ...+.+. ........ ....+.++||||...+. ....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~~-----------~~~~ 67 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDG-EEASLMVYDIWEQDGGR-----------WLPG 67 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETT-EEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-EEEEEECC-EEEEEEEEECCCCccch-----------hhhh
Confidence 478999999999999999999987653222 1222222 21122211 23467899999976532 1222
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT 174 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~ 174 (221)
.++..+|++++|++++++.+... ..++..+.+... ....|+++|+||+|+.... ......+........+..++.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 146 (166)
T 3q72_A 68 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAA 146 (166)
T ss_dssp -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGG
T ss_pred hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccC
Confidence 45577899999999985443332 344444544321 1234899999999987432 223334444333345556666
Q ss_pred HHHhHHHHHHh
Q 027618 175 KLRDQQFEVDS 185 (221)
Q Consensus 175 ~~~~~~~~~~~ 185 (221)
...++.+.++.
T Consensus 147 ~~~gi~~l~~~ 157 (166)
T 3q72_A 147 LHHNVQALFEG 157 (166)
T ss_dssp GTBSHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 66666665554
No 47
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.73 E-value=5.1e-17 Score=121.63 Aligned_cols=120 Identities=20% Similarity=0.109 Sum_probs=75.5
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHH
Q 027618 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGK 91 (221)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~ 91 (221)
.......+|+++|++|+|||||++++++.... .... +++.........+ .+. .+.+|||||...+....
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~----- 85 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYP-TEYI--PTAFDNFSAVVSV-DGRPVRLQLCDTAGQDEFDKLR----- 85 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEE-TTEEEEEEEEECCCSTTCSSSG-----
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCC-CCCC--CcccceeEEEEEE-CCEEEEEEEEECCCCHHHHHHh-----
Confidence 34556789999999999999999999987642 2111 1122222223333 443 57799999987654332
Q ss_pred HHHHHHHhhcCCCcEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
...+..+|++++|+|++++.+.... .|+..+..... ..|+++|+||+|+..
T Consensus 86 ------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 86 ------PLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRE 138 (201)
T ss_dssp ------GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGG
T ss_pred ------HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhh
Confidence 2466788999999999865444442 46666665432 348999999999864
No 48
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.73 E-value=2.1e-17 Score=124.19 Aligned_cols=156 Identities=18% Similarity=0.098 Sum_probs=70.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC--cccccccCCCCcceeeEEEEEEeeC---CceEEEEeCCCCCCCCCCchHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGR--RAFKSRASSSGVTSTCEMQRTVLKD---GQVVNVIDTPGLFDFSAGSEFVGK 91 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~--~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~liDtPG~~~~~~~~~~~~~ 91 (221)
....+|+++|++|+|||||+|++++. ...... ............+.+.. ...+.+|||||...
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------- 85 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDY--AMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL---------- 85 (208)
T ss_dssp EEEEEEEEC------------------------------------CEEEECTTSSEEEEEEEEETTTTHH----------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCC--CCccceEEEEEEEEECCcccEEEEEEEECCCcHH----------
Confidence 34579999999999999999999987 332111 11111122333344412 34789999999642
Q ss_pred HHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccccEEEEEecCCCCC-CC---hhhHHHHhcccC
Q 027618 92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE-DN---DETLEDYLGREC 165 (221)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~-~~---~~~~~~~l~~~~ 165 (221)
........+..+|++++|+|++++.+... ..++..+....+. ....|+++|+||+|+.. .. ...+.++.....
T Consensus 86 -~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~ 164 (208)
T 2yc2_C 86 -YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNT 164 (208)
T ss_dssp -HHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTT
T ss_pred -HHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcC
Confidence 22345567788999999999985544333 4566666654330 02348999999999865 21 234555665433
Q ss_pred CchhhhhHHH-HHhHHHHHHh
Q 027618 166 PKPLKKGATK-LRDQQFEVDS 185 (221)
Q Consensus 166 ~~~l~~~~~~-~~~~~~~~~~ 185 (221)
...+..++.. ..++.+.++.
T Consensus 165 ~~~~~~Sa~~~~~gi~~l~~~ 185 (208)
T 2yc2_C 165 LDFFDVSANPPGKDADAPFLS 185 (208)
T ss_dssp CEEEECCC-------CHHHHH
T ss_pred CEEEEeccCCCCcCHHHHHHH
Confidence 3455566666 5555555543
No 49
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.73 E-value=1.7e-17 Score=122.27 Aligned_cols=156 Identities=20% Similarity=0.167 Sum_probs=90.0
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHH
Q 027618 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVG 90 (221)
Q Consensus 13 ~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~ 90 (221)
+++..+..+|+++|++|+|||||+|++++........ + .+.......... .+. .+.+|||||...+.....
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~-~--t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~--- 84 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYD-P--TIEDSYLKHTEI-DNQWAILDVLDTAGQEEFSAMRE--- 84 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCC-T--TCCEEEEEEEEE-TTEEEEEEEEECCSCGGGCSSHH---
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCC-C--CccceeEEEEEe-CCcEEEEEEEECCCchhhHHHHH---
Confidence 3344567899999999999999999999765432211 1 111122233333 444 355699999765432221
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCC
Q 027618 91 KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECP 166 (221)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~ 166 (221)
.+++.+|++++|+|++++.+... ..++..+.+.... ...|+++|+||+|+.... .....++......
T Consensus 85 --------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 155 (183)
T 3kkq_A 85 --------QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTRDQGKEMATKYNI 155 (183)
T ss_dssp --------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTC
T ss_pred --------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhccCcCHHHHHHHHHHhCC
Confidence 23345699999999985433322 4555555544332 234899999999976421 2334444443333
Q ss_pred chhhhhHH-HHHhHHHHHH
Q 027618 167 KPLKKGAT-KLRDQQFEVD 184 (221)
Q Consensus 167 ~~l~~~~~-~~~~~~~~~~ 184 (221)
.++..++. ...++.+.++
T Consensus 156 ~~~~~Sa~~~~~~v~~l~~ 174 (183)
T 3kkq_A 156 PYIETSAKDPPLNVDKTFH 174 (183)
T ss_dssp CEEEEBCSSSCBSHHHHHH
T ss_pred eEEEeccCCCCCCHHHHHH
Confidence 34445554 4444444444
No 50
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=8.2e-18 Score=125.12 Aligned_cols=155 Identities=11% Similarity=0.019 Sum_probs=94.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
+...+|+++|++|+|||||+|++++...........+.+.......... ....+.+|||||... +...
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~ 88 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHE-KRVKLQIWDTAGQER-----------YRTI 88 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETT-TTEEEEEECHHHHHH-----------CHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECC-EEEEEEEEeCCChHH-----------HHHH
Confidence 3458999999999999999999998664322212222223222222222 456799999999432 2233
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG 172 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~ 172 (221)
....+..+|++++|+|++++.+... ..+++.+...... ..|+++|+||+|+.... ......+........+..+
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 166 (191)
T 3dz8_A 89 TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD--NAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEAS 166 (191)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECB
T ss_pred HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEE
Confidence 4456678899999999985433222 4566666554322 34899999999975421 2233344433223445556
Q ss_pred HHHHHhHHHHHHh
Q 027618 173 ATKLRDQQFEVDS 185 (221)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (221)
+....++.+.++.
T Consensus 167 a~~~~gi~~l~~~ 179 (191)
T 3dz8_A 167 AKENISVRQAFER 179 (191)
T ss_dssp TTTTBSHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 6555555555554
No 51
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=6.9e-17 Score=118.58 Aligned_cols=153 Identities=17% Similarity=0.123 Sum_probs=89.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
....+|+++|++|+|||||+|++++........ ....+.......... .+ ..+.+|||||...+.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~----------- 74 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFR----------- 74 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCC-CCCCSCEEEEEEEEE-TTEEEEEEEEECCCC---------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCc-CCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHH-----------
Confidence 345899999999999999999999876532221 112222222222333 43 378899999965422
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK 170 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~ 170 (221)
......+..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|+.... .....++........+.
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
T 2g6b_A 75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFME 152 (180)
T ss_dssp ----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEE
Confidence 223355677899999999985443332 456666665433 234899999999987532 22334444322223444
Q ss_pred hhHHHHHhHHHHHH
Q 027618 171 KGATKLRDQQFEVD 184 (221)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (221)
.++....++.+.++
T Consensus 153 ~Sa~~~~gi~~l~~ 166 (180)
T 2g6b_A 153 TSAKTGLNVDLAFT 166 (180)
T ss_dssp CCTTTCTTHHHHHH
T ss_pred EeCCCCCCHHHHHH
Confidence 45544444444444
No 52
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.72 E-value=9.8e-17 Score=117.15 Aligned_cols=154 Identities=19% Similarity=0.098 Sum_probs=84.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
...+|+++|++|+|||||+|++++....... .+.+.+... ..+.+ .+ ..+.+|||||..... ...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~--~~~~~-~~~~~~~~~~D~~g~~~~~---------~~~ 69 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYE--RTLTV-DGEDTTLVVVDTWEAEKLD---------KSW 69 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEE--EEEEE-TTEEEEEEEECCC----------------CH
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeE--EEEEE-CCEEEEEEEEecCCCCccc---------hhh
Confidence 4589999999999999999999988754332 222333222 22333 43 367899999976421 011
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhhh
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKK 171 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~ 171 (221)
.....+..+|++++|++++++.+... ..++..+.+... ....|+++|+||+|+..... .....+........+..
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 148 (175)
T 2nzj_A 70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIET 148 (175)
T ss_dssp HHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEEC
T ss_pred hHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEE
Confidence 22345677899999999985443333 344454544311 12348999999999875321 22233333222234445
Q ss_pred hHHHHHhHHHHHHh
Q 027618 172 GATKLRDQQFEVDS 185 (221)
Q Consensus 172 ~~~~~~~~~~~~~~ 185 (221)
++....++.+.++.
T Consensus 149 Sa~~g~gi~~l~~~ 162 (175)
T 2nzj_A 149 SATLQHNVAELFEG 162 (175)
T ss_dssp BTTTTBSHHHHHHH
T ss_pred ecCCCCCHHHHHHH
Confidence 55555555555543
No 53
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.72 E-value=6.9e-17 Score=119.45 Aligned_cols=152 Identities=18% Similarity=0.170 Sum_probs=90.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
...+|+++|++|+|||||+|+|++....... .+.+.......... .+. .+.+|||||...+.....
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~-------- 70 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEY---DPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRD-------- 70 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCC---CTTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTTHH--------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCC---CCCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHHHH--------
Confidence 4589999999999999999999977642221 12222222233333 444 467899999776433221
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhhhh
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKKG 172 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~~~ 172 (221)
..+..+|++++|+++++..+... ..++..+...... ...|+++|+||+|+.... .....++........+..+
T Consensus 71 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 146 (189)
T 4dsu_A 71 ---QYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS-EDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETS 146 (189)
T ss_dssp ---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECC
T ss_pred ---HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEe
Confidence 23344699999999985433333 4555555554322 235899999999986422 2344455443333445556
Q ss_pred HHHHHhHHHHHHh
Q 027618 173 ATKLRDQQFEVDS 185 (221)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (221)
+....++.+.++.
T Consensus 147 a~~g~gi~~l~~~ 159 (189)
T 4dsu_A 147 AKTRQGVDDAFYT 159 (189)
T ss_dssp TTTCTTHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 6555555555554
No 54
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.72 E-value=7.4e-18 Score=126.23 Aligned_cols=119 Identities=18% Similarity=0.166 Sum_probs=71.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
.....+|+++|++|+|||||+|++++...........+.+... ....+ .+ ..+.+|||||...+.
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~-~~~~~~l~i~Dt~G~~~~~---------- 91 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQM--KTLIV-DGERTVLQLWDTAGQERFR---------- 91 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEE--EEEEE-TTEEEEEEEEECTTCTTCH----------
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEE--EEEEE-CCEEEEEEEEECCCCcchh----------
Confidence 3456899999999999999999999876432221122222222 22223 33 468899999976421
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (221)
......++.+|++++|+|+++..+... ..|++.+...... ..|+++|+||+|+.
T Consensus 92 -~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 92 -SIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE--TVPIMLVGNKADIR 146 (199)
T ss_dssp -HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred -hhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccc
Confidence 112233445699999999985544333 4556666554222 34899999999975
No 55
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1.8e-17 Score=123.27 Aligned_cols=154 Identities=15% Similarity=0.130 Sum_probs=91.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
+..+|+++|++|+|||||+|+|++...........+ .......+.+. ....+.+|||||...+...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 80 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG--VDFKVKTISVDGNKAKLAIWDTAGQERFRTL----------- 80 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCS--EEEEEEEEEETTEEEEEEEEEECSSGGGCCS-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccc--eEEEEEEEEECCeEEEEEEEeCCCchhhhhh-----------
Confidence 458999999999999999999998765322222222 22222233331 2357889999997654322
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhhhhH
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKKGA 173 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~~~~ 173 (221)
....++.+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+.... .....++........+..++
T Consensus 81 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (195)
T 1x3s_A 81 TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASA 159 (195)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecC
Confidence 2245577899999999985433222 344444433221 1235899999999985321 23445555433333444555
Q ss_pred HHHHhHHHHHHh
Q 027618 174 TKLRDQQFEVDS 185 (221)
Q Consensus 174 ~~~~~~~~~~~~ 185 (221)
.....+.+.++.
T Consensus 160 ~~~~gi~~l~~~ 171 (195)
T 1x3s_A 160 KTCDGVQCAFEE 171 (195)
T ss_dssp TTCTTHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 555555554443
No 56
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=123.55 Aligned_cols=153 Identities=15% Similarity=0.097 Sum_probs=89.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
....+|+++|++|+|||||+|++++........ ...+.......+.+ .+ ..+.+|||||...+..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~---------- 89 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSN--HTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRS---------- 89 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSC----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCC--CcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHHH----------
Confidence 445899999999999999999999876533221 11222222233333 44 5789999999543221
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK 170 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~ 170 (221)
.....+..+|++++|+|++++.+... ..++..+...... ..|+++|+||+|+.... .....++........+.
T Consensus 90 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 166 (200)
T 2o52_A 90 -VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP--NIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLE 166 (200)
T ss_dssp -CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCT--TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred -HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEE
Confidence 12245677899999999985443332 4555555554322 34899999999985321 22344444433333445
Q ss_pred hhHHHHHhHHHHHHh
Q 027618 171 KGATKLRDQQFEVDS 185 (221)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (221)
.++....++.+.++.
T Consensus 167 ~SA~~g~gi~~l~~~ 181 (200)
T 2o52_A 167 TSALTGENVEEAFLK 181 (200)
T ss_dssp ECTTTCTTHHHHHHH
T ss_pred EeCCCCCCHHHHHHH
Confidence 566655556555554
No 57
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.72 E-value=1.3e-16 Score=125.50 Aligned_cols=127 Identities=20% Similarity=0.222 Sum_probs=78.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchH-
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEF- 88 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~- 88 (221)
...+|+++|.+|+|||||+|+|++...+..... ..+.+.........+ .+ ..+.+|||||+.++....+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-GGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---CCEEEEEEECCCCSCCSCCTTTT
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec-CCeEEEEEEEECCCccccccchhhH
Confidence 358999999999999999999999876554321 111222222223322 33 38999999999765333221
Q ss_pred --HHHHH----HHHHHh---------hcCCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 89 --VGKEI----VKCIGM---------AKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 89 --~~~~~----~~~~~~---------~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+...+ ..++.. ....+|+++++++.. ..+...+..+++.+.. ..|+++|+||+|...
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT 158 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCC
Confidence 22111 222221 113478999999765 4688888777776654 348999999999886
No 58
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.72 E-value=1.7e-16 Score=115.41 Aligned_cols=116 Identities=15% Similarity=0.076 Sum_probs=79.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
...+|+++|++|+|||||+|++++...... ..|.........+ .+..+.+|||||...+. ...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~-----------~~~ 68 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGLTSIR-----------PYW 68 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEEE-TTEEEEEEEECCCGGGG-----------GGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCc-----CCcCccceEEEEE-CCEEEEEEECCCChhhh-----------HHH
Confidence 458999999999999999999987664221 1233344455566 68899999999976432 223
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
...++.+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+..
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 69 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDMEQ 122 (171)
T ss_dssp GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hCCCEEEEEEECCCCcC
Confidence 356788999999999986655433 233333322111 12458999999999876
No 59
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=2.5e-17 Score=123.79 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=94.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
....+|+++|++|+|||||+|++++....... ....+.......+.+ .+ ..+.+|||||... +.
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~ 89 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FR 89 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HH
Confidence 34589999999999999999999987653221 122222333334444 44 3688999999643 12
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK 170 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~ 170 (221)
......++.+|++++|+|++++.+... ..|+..+...... ..|+++|+||+|+.... .....++........+.
T Consensus 90 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 167 (201)
T 2ew1_A 90 SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN--KVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLE 167 (201)
T ss_dssp HHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEE
Confidence 334567788999999999985443322 4566666554322 34799999999986421 22344444332234455
Q ss_pred hhHHHHHhHHHHHHh
Q 027618 171 KGATKLRDQQFEVDS 185 (221)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (221)
.++....++.+.++.
T Consensus 168 ~Sa~~g~gv~~l~~~ 182 (201)
T 2ew1_A 168 TSAKESDNVEKLFLD 182 (201)
T ss_dssp CCTTTCTTHHHHHHH
T ss_pred EeCCCCCCHHHHHHH
Confidence 566555555555554
No 60
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.72 E-value=2.8e-17 Score=121.94 Aligned_cols=155 Identities=12% Similarity=0.076 Sum_probs=91.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
..+..+|+++|++|+|||||+|++++......... ..+.......+.+ .+ ..+.+|||||... +
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~ 82 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEA--TIGVDFRERAVDI-DGERIKIQLWDTAGQER-----------F 82 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCC--CCSCCEEEEEEEE-TTEEEEEEEEECCCSHH-----------H
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--CcceEEEEEEEEE-CCEEEEEEEEECCCchh-----------h
Confidence 44568999999999999999999997765332221 2222223333333 33 4789999999542 1
Q ss_pred H-HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCch
Q 027618 94 V-KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKP 168 (221)
Q Consensus 94 ~-~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~ 168 (221)
. ......+..+|++++|+|+++..+... ..++..+.+... ....|+++|+||+|+.... ......+........
T Consensus 83 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~ 161 (189)
T 1z06_A 83 RKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPL 161 (189)
T ss_dssp HTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCE
T ss_pred hhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEE
Confidence 1 222345577899999999985433322 456666665532 2234899999999986421 223444444322234
Q ss_pred hhhhHHHH---HhHHHHHHh
Q 027618 169 LKKGATKL---RDQQFEVDS 185 (221)
Q Consensus 169 l~~~~~~~---~~~~~~~~~ 185 (221)
+..++... ..+.+.++.
T Consensus 162 ~~~Sa~~~~~~~~i~~l~~~ 181 (189)
T 1z06_A 162 FETSAKNPNDNDHVEAIFMT 181 (189)
T ss_dssp EECCSSSGGGGSCHHHHHHH
T ss_pred EEEeCCcCCcccCHHHHHHH
Confidence 44444444 444444443
No 61
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.72 E-value=5.5e-18 Score=142.32 Aligned_cols=125 Identities=23% Similarity=0.206 Sum_probs=84.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
...++|+++|.+|||||||+|+|++...... ....+.|.........+ .+..+.+|||||+... .+...+++...
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~---~~~~~~~~~~~ 95 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIG---DEPFLAQIRQQ 95 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEE-CCceEEEEECCCCCCc---chHHHHHHHHH
Confidence 3457999999999999999999999765422 23456777777777777 7889999999998742 22235566666
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+..+++.+|++++|+|..+.++..+..+.+.+++ ...|+++|+||+|...
T Consensus 96 ~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 96 AEIAMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTE 145 (456)
T ss_dssp HHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-----CCSCEEEEEECC----
T ss_pred HHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-----cCCCEEEEEECccchh
Confidence 6667777899999999988899988887777754 2348999999999765
No 62
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.71 E-value=2.2e-16 Score=117.44 Aligned_cols=158 Identities=10% Similarity=0.051 Sum_probs=97.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeeEEEEE---Ee-eCCceEEEEeCCCCCCCCCCc
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRT---VL-KDGQVVNVIDTPGLFDFSAGS 86 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~------~~~~t~~~~~~~~---~~-~~~~~~~liDtPG~~~~~~~~ 86 (221)
....+|+++|++|+|||||++.+.+......... ....|........ .. .....+.+|||||...+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--- 88 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN--- 88 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS---
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH---
Confidence 3458999999999999999998887543221110 0111222221111 11 023468899999976543
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhc----ccccccEEEEEecCCCCCC-ChhhHHHHh
Q 027618 87 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELED-NDETLEDYL 161 (221)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~ivv~tk~D~~~~-~~~~~~~~l 161 (221)
......++.+|++++|+|+++.....+...++.+.+++. .....|+++|+||+|+... ....+.+++
T Consensus 89 --------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~ 160 (198)
T 3t1o_A 89 --------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVV 160 (198)
T ss_dssp --------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred --------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHH
Confidence 223346788899999999985544444444444444322 1234589999999998653 235567777
Q ss_pred cccCC-chhhhhHHHHHhHHHHHHh
Q 027618 162 GRECP-KPLKKGATKLRDQQFEVDS 185 (221)
Q Consensus 162 ~~~~~-~~l~~~~~~~~~~~~~~~~ 185 (221)
..... ..+..++....++.+.++.
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~~l~~~ 185 (198)
T 3t1o_A 161 DPEGKFPVLEAVATEGKGVFETLKE 185 (198)
T ss_dssp CTTCCSCEEECBGGGTBTHHHHHHH
T ss_pred HhcCCceEEEEecCCCcCHHHHHHH
Confidence 65434 5666777777777776665
No 63
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.71 E-value=1.9e-15 Score=123.02 Aligned_cols=159 Identities=19% Similarity=0.146 Sum_probs=101.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
....+|+++|++|+|||||+|+|++...... .....|.......... .+..+.++||||+.+.......... ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~--~~~ 239 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIA--SYPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIE--KQA 239 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEE--CCTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHH--HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHH--HHH
Confidence 4558999999999999999999999874222 2234455555555555 6778999999999764332211111 122
Q ss_pred HHhhcCCCcEEEEEEeCCCCC--CHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCChhh---HHHHhcccCCchhh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRF--SQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDET---LEDYLGRECPKPLK 170 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~--~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~---~~~~l~~~~~~~l~ 170 (221)
+......+|++++|+|+++.. +... ..++..+...++ ..|+++|+||+|... ... +.+++.......+.
T Consensus 240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~ 314 (357)
T 2e87_A 240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVAD--EENIKRLEKFVKEKGLNPIK 314 (357)
T ss_dssp HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCC--HHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCC--hHHHHHHHHHHHhcCCCeEE
Confidence 223344679999999987543 4444 566777766543 348999999999876 333 33333322334455
Q ss_pred hhHHHHHhHHHHHHh
Q 027618 171 KGATKLRDQQFEVDS 185 (221)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (221)
.++....++.+.++.
T Consensus 315 iSA~~g~gi~~l~~~ 329 (357)
T 2e87_A 315 ISALKGTGIDLVKEE 329 (357)
T ss_dssp CBTTTTBTHHHHHHH
T ss_pred EeCCCCcCHHHHHHH
Confidence 666666666666654
No 64
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.71 E-value=2.4e-17 Score=125.06 Aligned_cols=153 Identities=18% Similarity=0.178 Sum_probs=92.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
....+|+++|.+|+|||||+|+|++...........+.+.... ......+ ..+.+|||||...+.....
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~------- 79 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPV--TFLDDQGNVIKFNVWDTAGQEKKAVLKD------- 79 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEE--EEEBTTSCEEEEEEEEECSGGGTSCCCH-------
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEE--EEEeCCCcEEEEEEEecCCchhhchHHH-------
Confidence 3458999999999999999999997764322222222222111 1111122 5689999999876443322
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK 170 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~ 170 (221)
..+..+|++++|+|++++.+..+ ..|+..+....... .|+++|+||+|+.... ......+........+.
T Consensus 80 ----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (218)
T 4djt_A 80 ----VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFE 153 (218)
T ss_dssp ----HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEE
T ss_pred ----HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEE
Confidence 34567899999999986554443 46666666654433 4899999999987531 22344554433334455
Q ss_pred hhHHHHHhHHHHHH
Q 027618 171 KGATKLRDQQFEVD 184 (221)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (221)
.++....++.+.++
T Consensus 154 ~Sa~~g~gv~~l~~ 167 (218)
T 4djt_A 154 ISAKTAHNFGLPFL 167 (218)
T ss_dssp EBTTTTBTTTHHHH
T ss_pred EecCCCCCHHHHHH
Confidence 55554444444443
No 65
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.71 E-value=5.9e-17 Score=118.76 Aligned_cols=154 Identities=14% Similarity=0.045 Sum_probs=92.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC---ceEEEEeCCCCCCCCCCchHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG---QVVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
....+|+++|++|+|||||+|++++.........+. +.......+.+ .+ ..+.+|||||...+...
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~--~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~~-------- 72 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTI--GLDFFLRRITL-PGNLNVTLQIWDIGGQTIGGKM-------- 72 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTT--TSSEEEEEEEE-TTTEEEEEEEEECTTCCTTCTT--------
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCce--eEEEEEEEEEe-CCCCEEEEEEEECCCCccccch--------
Confidence 456899999999999999999999876532211111 12233334444 33 57899999998754322
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc-ccccEEEEEecCCCCCCC---hhhHHHHhcccCCch
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK-IFDYMIVVFTGGDELEDN---DETLEDYLGRECPKP 168 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~ 168 (221)
....+..+|++++|+|++++.+... ..++..+....... ..+++++|+||+|+.... .....++........
T Consensus 73 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 2hxs_A 73 ---LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSS 149 (178)
T ss_dssp ---HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEE
T ss_pred ---hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcE
Confidence 1234577899999999985444332 45566665543211 223489999999986421 233444444322334
Q ss_pred hhhhHHHHHhHHHHHH
Q 027618 169 LKKGATKLRDQQFEVD 184 (221)
Q Consensus 169 l~~~~~~~~~~~~~~~ 184 (221)
+..++....++.+.++
T Consensus 150 ~~~Sa~~~~gi~~l~~ 165 (178)
T 2hxs_A 150 HFVSAKTGDSVFLCFQ 165 (178)
T ss_dssp EEECTTTCTTHHHHHH
T ss_pred EEEeCCCCCCHHHHHH
Confidence 4455554444444444
No 66
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.71 E-value=6e-17 Score=127.31 Aligned_cols=122 Identities=20% Similarity=0.202 Sum_probs=84.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCc--hHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS--EFVGKEIVKC 96 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~~~~ 96 (221)
..+|+++|.+|+|||||+|+|+|...... ...+.|.......+.+ .+..+.+|||||+.++.... ....+.+...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~--~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVG--NWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEE--ECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccC--CCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 47999999999999999999999874322 2345666676677766 67889999999998865321 1122222222
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
. .....+|++++|+|+++ . .....+..++.+. ..|+++|+||+|...
T Consensus 80 ~-~~~~~~d~ii~VvD~~~-~-~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 80 Y-ILSGDADLLINVVDASN-L-ERNLYLTLQLLEL-----GIPCIVALNMLDIAE 126 (274)
T ss_dssp H-HHHTCCSEEEEEEEGGG-H-HHHHHHHHHHHHH-----TCCEEEEEECHHHHH
T ss_pred H-HhhcCCCEEEEEecCCC-h-HHHHHHHHHHHhc-----CCCEEEEEECccchh
Confidence 2 23478899999999984 2 2334455555543 348999999999764
No 67
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.71 E-value=6.7e-17 Score=120.75 Aligned_cols=129 Identities=14% Similarity=0.090 Sum_probs=78.5
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 027618 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
.+.....+|+++|.+|||||||++.+++........ ....+...............+.+|||||...+......
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~----- 88 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETL-FLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD----- 88 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGG-GCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC-----
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCccee-eeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh-----
Confidence 345567899999999999999999998864322111 11112112111121114468999999998765433200
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....++.+|++++|+|+++++......+..++.+........|+++|+||+|+..
T Consensus 89 ---~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 89 ---YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp ---HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred ---cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 0134456799999999997643444555566665422223458999999999875
No 68
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=3.1e-17 Score=119.35 Aligned_cols=119 Identities=22% Similarity=0.182 Sum_probs=74.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
..+|+++|++|+|||||+|++++...........+.+.. ...... ....+.+|||||..++. ...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~~~Dt~G~~~~~-----------~~~ 68 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR---QVISCDKSICTLQITDTTGSHQFP-----------AMQ 68 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE---EEEEETTEEEEEEEEECCSCSSCH-----------HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE---EEEEECCEEEEEEEEECCCchhhH-----------HHH
Confidence 489999999999999999999987653222111121111 112220 22468899999976532 111
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
...+..+|++++|++++++.+... ..++..+.+..+.....|+++|+||+|+..
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 69 RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred HHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 223344699999999985433332 456666666543223458999999999764
No 69
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=118.75 Aligned_cols=154 Identities=15% Similarity=0.033 Sum_probs=93.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
.....+|+++|.+|+|||||+|++++...+.... ..|.......+.+ .+..+.+|||||...+..
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~----------- 82 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI---LPTIGFSIEKFKS-SSLSFTVFDMSGQGRYRN----------- 82 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC---CCCSSEEEEEEEC-SSCEEEEEEECCSTTTGG-----------
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCc---CCccceeEEEEEE-CCEEEEEEECCCCHHHHH-----------
Confidence 3456899999999999999999999887322221 2233344555566 678999999999765422
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccccEEEEEecCCCCCCC-hhhHHHHhcc-c----CCc
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELEDN-DETLEDYLGR-E----CPK 167 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~-~----~~~ 167 (221)
.....+..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|+.... ...+.+++.. . ...
T Consensus 83 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 162 (190)
T 2h57_A 83 LWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWH 162 (190)
T ss_dssp GGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEE
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceE
Confidence 12345677899999999985433222 2344444332111 0235899999999987531 2345555531 1 112
Q ss_pred hhhhhHHHHHhHHHHHH
Q 027618 168 PLKKGATKLRDQQFEVD 184 (221)
Q Consensus 168 ~l~~~~~~~~~~~~~~~ 184 (221)
.+..++....++.+.++
T Consensus 163 ~~~~Sa~~~~gi~~l~~ 179 (190)
T 2h57_A 163 ICASDAIKGEGLQEGVD 179 (190)
T ss_dssp EEECBTTTTBTHHHHHH
T ss_pred EEEccCCCCcCHHHHHH
Confidence 34455555555554444
No 70
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.71 E-value=1.4e-17 Score=121.98 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=76.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
+..+|+++|++|+|||||+|++++....... ....+.........+ .+ ..+.+|||||...+...
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~---------- 79 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSL---------- 79 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGG----------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHHH----------
Confidence 3489999999999999999999976653222 222233333334444 44 47889999996543211
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....+..+|++++|+|++++.+... ..++..+....+. ..|+++|+||+|+..
T Consensus 80 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 80 -IPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS--DVIIMLVGNKTDLSD 133 (179)
T ss_dssp -SHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECGGGGG
T ss_pred -HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccc
Confidence 1233456799999999985433222 4555555554332 348999999999864
No 71
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.71 E-value=8.2e-17 Score=116.42 Aligned_cols=150 Identities=15% Similarity=0.084 Sum_probs=86.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
..+|+++|++|+|||||+|++++........ + .+.......... .+ ..+.++||||...+. ..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~--~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~-----------~~ 67 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYD-P--TIEDFYRKEIEV-DSSPSVLEILDTAGTEQFA-----------SM 67 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCC-T--TCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH-----------HH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCC-C--CcceeEEEEEEE-CCEEEEEEEEECCCchhhH-----------HH
Confidence 4799999999999999999999776432211 1 111222233333 33 348899999976421 11
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKG 172 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~ 172 (221)
....+..+|++++|+++.+..+... ..++..+.+.... ...|+++|+||+|+.... .....++........+..+
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 146 (167)
T 1kao_A 68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETS 146 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEEC
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEec
Confidence 1223345599999999985443332 4455555554332 235899999999976421 1223333332222334445
Q ss_pred HHHHHhHHHHHH
Q 027618 173 ATKLRDQQFEVD 184 (221)
Q Consensus 173 ~~~~~~~~~~~~ 184 (221)
+....++.+.++
T Consensus 147 a~~~~gi~~l~~ 158 (167)
T 1kao_A 147 AKSKTMVDELFA 158 (167)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCCcCHHHHHH
Confidence 444444444443
No 72
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.70 E-value=5.4e-17 Score=117.52 Aligned_cols=151 Identities=17% Similarity=0.110 Sum_probs=86.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
+..+|+++|++|+|||||+|++++........ +.+.........+ .+ ..+.+|||||..++. .
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~-----------~ 67 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE---PTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA-----------A 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCC---TTCCEEEEEEEEE-TTEEEEEEEEECCC---CH-----------H
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCC---CCcceEEEEEEEE-CCEEEEEEEEECCCcchhH-----------H
Confidence 45899999999999999999999876432211 1111222222333 33 368899999965421 1
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhh
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKK 171 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~ 171 (221)
.....+..+|++++|+++++..+... ..++..+.+.... ...|+++|+||+|+.... .....++........+..
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVET 146 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEe
Confidence 12233445699999999985443332 4555666555332 234899999999986421 223444443322234444
Q ss_pred hHHHHHhHHHHHH
Q 027618 172 GATKLRDQQFEVD 184 (221)
Q Consensus 172 ~~~~~~~~~~~~~ 184 (221)
++....++.+.++
T Consensus 147 Sa~~~~gi~~l~~ 159 (168)
T 1u8z_A 147 SAKTRANVDKVFF 159 (168)
T ss_dssp CTTTCTTHHHHHH
T ss_pred CCCCCCCHHHHHH
Confidence 5544444444443
No 73
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.70 E-value=9.6e-17 Score=120.39 Aligned_cols=154 Identities=17% Similarity=0.105 Sum_probs=92.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
..+..+|+++|++|+|||||+|++++........ +.+.......+.+ .+ ..+.+|||||...+.
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~---------- 76 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE---PTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA---------- 76 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC---TTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH----------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCC---CccceEEEEEEEE-CCEEEEEEEEcCCChhhhH----------
Confidence 3456899999999999999999999876422211 1122222233333 44 378899999976531
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchh
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPL 169 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l 169 (221)
......+..+|++++|+++++..+... ..++..+...... ...|+++|+||+|+.... ...+.++........+
T Consensus 77 -~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 154 (206)
T 2bov_A 77 -AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYV 154 (206)
T ss_dssp -HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred -HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEE
Confidence 112223345699999999985433322 4555556554321 234899999999986421 2344555543333455
Q ss_pred hhhHHHHHhHHHHHHh
Q 027618 170 KKGATKLRDQQFEVDS 185 (221)
Q Consensus 170 ~~~~~~~~~~~~~~~~ 185 (221)
..++....++.+.++.
T Consensus 155 ~~Sa~~g~gi~~l~~~ 170 (206)
T 2bov_A 155 ETSAKTRANVDKVFFD 170 (206)
T ss_dssp EECTTTCTTHHHHHHH
T ss_pred EEeCCCCCCHHHHHHH
Confidence 5565555555555554
No 74
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.70 E-value=5.3e-17 Score=121.86 Aligned_cols=153 Identities=12% Similarity=0.064 Sum_probs=92.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
....+|+++|++|+|||||+|++++....... ....+.......+.+ .+ ..+.+|||||...+ .
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~ 92 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQ--GSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERF-----------R 92 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGGG-----------H
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCC--CCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhH-----------H
Confidence 34579999999999999999999877642211 111112222333444 44 47899999996532 1
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCC-chh
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECP-KPL 169 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~-~~l 169 (221)
......++.+|++++|+|++++.+... ..++..+.+.... ..|+++|+||+|+.... ...+.++...... ..+
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 170 (201)
T 2hup_A 93 TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS--NIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAI 170 (201)
T ss_dssp HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEE
Confidence 233455678899999999985433322 4566666554322 34899999999986421 2345555553222 455
Q ss_pred hhhHHHHHhHHHHHHh
Q 027618 170 KKGATKLRDQQFEVDS 185 (221)
Q Consensus 170 ~~~~~~~~~~~~~~~~ 185 (221)
..++....++.+.++.
T Consensus 171 ~~SA~~g~gi~~l~~~ 186 (201)
T 2hup_A 171 ETSAKDSSNVEEAFLR 186 (201)
T ss_dssp ECBTTTTBSHHHHHHH
T ss_pred EEeCCCCCCHHHHHHH
Confidence 5666665566655554
No 75
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.70 E-value=1.1e-17 Score=139.74 Aligned_cols=155 Identities=21% Similarity=0.163 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
.+|+++|.+|+|||||+|+|++...... ....+.|.........+ .+..+.+|||||+.... ......+......
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~~ 78 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQAEI 78 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEE-CCceEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 6899999999999999999998765322 23456676777677777 77889999999987422 1244556666666
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCChhhHHHHhcccCCchhhhhHHHHHhH
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKLRDQ 179 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 179 (221)
++..+|++++|+|+.++.+..+..+.+.+++ ...|+++|+||+|..... ....++.+......+..|+....++
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~~-~~~~~~~~lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEMR-ANIYDFYSLGFGEPYPISGTHGLGL 152 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC------CCCSSGGGSSCCCEECBTTTTBTH
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCccch-hhHHHHHHcCCCCeEEEeCcCCCCh
Confidence 6777899999999998899888766665543 234899999999987521 1112222222223444555555555
Q ss_pred HHHHHh
Q 027618 180 QFEVDS 185 (221)
Q Consensus 180 ~~~~~~ 185 (221)
.++++.
T Consensus 153 ~~L~~~ 158 (436)
T 2hjg_A 153 GDLLDA 158 (436)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 76
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.70 E-value=1.2e-16 Score=121.17 Aligned_cols=119 Identities=13% Similarity=0.033 Sum_probs=78.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
.....+|+++|.+|+|||||++++++.........+.+ .......... ....+.+|||||...+...
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------- 91 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVF---ENYTACLETEEQRVELSLWDTSGSPYYDNV--------- 91 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSE---EEEEEEEEC--CEEEEEEEEECCSGGGTTT---------
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeee---eeEEEEEEECCEEEEEEEEECCCCHhHHHH---------
Confidence 34568999999999999999999998765322111111 1111122221 3357889999997654322
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....+..+|++++|+|++++.+... ..|+..+..... ..|+++|+||+|+..
T Consensus 92 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 92 --RPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP---STRVLLIGCKTDLRT 145 (214)
T ss_dssp --GGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT---TSEEEEEEECGGGGG
T ss_pred --HHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 2356788999999999986555444 466677766532 348999999999864
No 77
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.70 E-value=8e-17 Score=135.32 Aligned_cols=125 Identities=17% Similarity=0.176 Sum_probs=67.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
+.+|+++|++|+|||||+|+|++....... ...++|.......+.+ .+..+.+|||||+.++... +.........
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs-~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~~---ve~~gi~~~~ 307 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVS-HMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAGEE---IEHEGIRRSR 307 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC-----------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCCCcchhH---HHHHHHHHHH
Confidence 468999999999999999999998643222 2334566666666666 8889999999999763221 1111123334
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
..+..+|++++|+|+++..+.... ....++... . ..|+++|+||+|+...
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~---~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAH-P---AAKFLTVANKLDRAAN 358 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T---TSEEEEEEECTTSCTT
T ss_pred hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C---CCCEEEEEECcCCCCc
Confidence 567889999999999977776322 222222222 2 3489999999998863
No 78
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.70 E-value=7.7e-17 Score=122.85 Aligned_cols=152 Identities=15% Similarity=0.099 Sum_probs=90.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
....+|+++|++|+|||||+|+|++......... ..+.......+.+ .+ ..+.+|||||...+....
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~-------- 79 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKS--TIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAIT-------- 79 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCCC--------
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCC--cccceeEEEEEEE-CCEEEEEEEEECCCccchhhhH--------
Confidence 4458999999999999999999998765322211 1222222233334 44 478999999987654322
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK 170 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~ 170 (221)
...++.+|++++|+|++++.+... ..|+..+...... ..|+++|+||+|+.... .....++.......++.
T Consensus 80 ---~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 154 (223)
T 3cpj_B 80 ---SAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD--NVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTE 154 (223)
T ss_dssp ---GGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred ---HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence 246678899999999985544333 4555666554222 34899999999986421 23445555433333444
Q ss_pred hhHHHHHhHHHHHH
Q 027618 171 KGATKLRDQQFEVD 184 (221)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (221)
.++.....+.+.++
T Consensus 155 ~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 155 TSALNSENVDKAFE 168 (223)
T ss_dssp CCCC-CCCHHHHHH
T ss_pred EeCCCCCCHHHHHH
Confidence 44444444444443
No 79
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.70 E-value=1.3e-16 Score=117.70 Aligned_cols=153 Identities=16% Similarity=0.101 Sum_probs=91.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
.+..+|+++|++|+|||||+|+|++........ +.+.........+ .+ ..+.+|||||..++.
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----------- 80 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE---PTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA----------- 80 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC---TTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH-----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCC---CccceEEEEEEEE-CCEEEEEEEEECCCCcccH-----------
Confidence 456899999999999999999999876432211 1122222223333 44 368899999976531
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK 170 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~ 170 (221)
......+..+|++++|+++++..+... ..++..+...... ...|+++|+||+|+.... ...+.++........+.
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 159 (187)
T 2a9k_A 81 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVE 159 (187)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEE
Confidence 112223345699999999985433222 4555666555332 234899999999976421 23444555433334444
Q ss_pred hhHHHHHhHHHHHHh
Q 027618 171 KGATKLRDQQFEVDS 185 (221)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (221)
.++.....+.+.++.
T Consensus 160 ~Sa~~~~gi~~l~~~ 174 (187)
T 2a9k_A 160 TSAKTRANVDKVFFD 174 (187)
T ss_dssp CCTTTCTTHHHHHHH
T ss_pred eCCCCCCCHHHHHHH
Confidence 555555555554443
No 80
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.70 E-value=3.6e-16 Score=116.28 Aligned_cols=128 Identities=12% Similarity=0.072 Sum_probs=83.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
.+..+|+++|++|+|||||++++++...... ..|.......+.+ .+..+.++||||...+...
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~----------- 83 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELAI-GNIKFTTFDLGGHIQARRL----------- 83 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEEEE-TTEEEEEEECCCSGGGTTS-----------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcc-----ccCCCCCeEEEEE-CCEEEEEEECCCCHHHHHH-----------
Confidence 4457999999999999999999998764221 1233333455556 6789999999998654322
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC-ChhhHHHHhc
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLG 162 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~-~~~~~~~~l~ 162 (221)
....++.+|++++|+|++++.+... ..++..+.+.. .....|+++|+||+|+... ....+.+++.
T Consensus 84 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~ 150 (190)
T 1m2o_B 84 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPNAVSEAELRSALG 150 (190)
T ss_dssp GGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred HHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcch-hhcCCCEEEEEECCCCcCCCCHHHHHHHhC
Confidence 2245678899999999986554443 33444433221 1123589999999998752 1334555544
No 81
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.70 E-value=6.2e-17 Score=117.62 Aligned_cols=152 Identities=20% Similarity=0.111 Sum_probs=83.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
.+|+++|++|+|||||+|++++......... ..+.........+ .+ ..+.+|||||..++... +.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~-------~~--- 69 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEM--ENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGW-------LQ--- 69 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccC--CCcCCeeeEEEEE-CCeEEEEEEEECCCccccchh-------hh---
Confidence 6899999999999999999997654322211 2223333333333 33 46779999998753211 11
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhhhhH
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGA 173 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~ 173 (221)
..++..+|++++|+|++++-+... ..++..+...... ...|+++|+||+|+.... .....++........+..++
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (169)
T 3q85_A 70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSA 148 (169)
T ss_dssp CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecC
Confidence 122334699999999985433222 3455555443221 235899999999976321 23344444433334455666
Q ss_pred HHHHhHHHHHHh
Q 027618 174 TKLRDQQFEVDS 185 (221)
Q Consensus 174 ~~~~~~~~~~~~ 185 (221)
....++.+.++.
T Consensus 149 ~~~~~v~~l~~~ 160 (169)
T 3q85_A 149 ALHHNTRELFEG 160 (169)
T ss_dssp TTTBSHHHHHHH
T ss_pred ccCCCHHHHHHH
Confidence 655555555554
No 82
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.70 E-value=1.6e-16 Score=116.48 Aligned_cols=148 Identities=17% Similarity=0.064 Sum_probs=90.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
.+..+|+++|++|+|||||+|++++...... .+.... .....+.. .+ ..+.+|||||... .
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~--~~t~~~--~~~~~~~~-~~~~~~l~i~Dt~G~~~-----~------- 67 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVL--EKTESE--QYKKEMLV-DGQTHLVLIREEAGAPD-----A------- 67 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCC--SSCSSS--EEEEEEEE-TTEEEEEEEEECSSSCC-----H-------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCc--CCCcce--eEEEEEEE-CCEEEEEEEEECCCCch-----h-------
Confidence 3458999999999999999999998765331 111111 11222333 33 4578899999753 1
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccccEEEEEecCCCCC--C---ChhhHHHHhccc-CC
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE--D---NDETLEDYLGRE-CP 166 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~--~---~~~~~~~~l~~~-~~ 166 (221)
..++.+|++++|+|++++.+... ..|++++.+.... ....|+++|+||+|+.. . ......++.... ..
T Consensus 68 ----~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~ 143 (178)
T 2iwr_A 68 ----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRC 143 (178)
T ss_dssp ----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSE
T ss_pred ----HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCC
Confidence 23344699999999986554444 4455556554331 12348999999999731 1 123344454431 23
Q ss_pred chhhhhHHHHHhHHHHHHh
Q 027618 167 KPLKKGATKLRDQQFEVDS 185 (221)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~~ 185 (221)
..+..++....++.+.++.
T Consensus 144 ~~~~~Sa~~~~~i~~lf~~ 162 (178)
T 2iwr_A 144 SYYETXATYGLNVDRVFQE 162 (178)
T ss_dssp EEEEEBTTTTBTHHHHHHH
T ss_pred eEEEEeccccCCHHHHHHH
Confidence 4455666666666665554
No 83
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.69 E-value=5e-16 Score=120.99 Aligned_cols=120 Identities=22% Similarity=0.263 Sum_probs=82.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
..+|+++|++|+|||||+|+|+|....... ..+.|.......+.+ .+..+.+|||||..++..... .+.+...+.
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~--~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~e~v~~~~~ 79 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVAN--WPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSI--DEKIARDYL 79 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSH--HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCH--HHHHHHHHH
Confidence 478999999999999999999998754332 335666666666666 778999999999987654321 122222221
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
. ...+|++++|+|+++ +. ....+...+.+. ..|+++|+||+|...
T Consensus 80 ~-~~~~d~ii~V~D~t~-~~-~~~~~~~~l~~~-----~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 80 L-KGDADLVILVADSVN-PE-QSLYLLLEILEM-----EKKVILAMTAIDEAK 124 (258)
T ss_dssp H-HSCCSEEEEEEETTS-CH-HHHHHHHHHHTT-----TCCEEEEEECHHHHH
T ss_pred h-hcCCCEEEEEeCCCc-hh-hHHHHHHHHHhc-----CCCEEEEEECcCCCC
Confidence 1 157899999999984 32 223344444332 348999999999753
No 84
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=8.6e-17 Score=120.02 Aligned_cols=154 Identities=19% Similarity=0.107 Sum_probs=89.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
....+|+++|++|+|||||+|+|++...........+.+. ...... . ...+.+|||||...+.
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~l~Dt~G~~~~~----------- 70 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY---RQVISC-DKSVCTLQITDTTGSHQFP----------- 70 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE---EEEEEE-TTEEEEEEEEECCGGGSCH-----------
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce---eEEEEE-CCEEEEEEEEeCCChHHhH-----------
Confidence 3458999999999999999999998665322211111111 111222 2 2368899999976531
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhhh
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKK 171 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~~ 171 (221)
......++.+|++++|+++++..+... ..++..+.+..+.....|+++|+||+|+.... .....++........+..
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 150 (199)
T 2gf0_A 71 AMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMET 150 (199)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEE
Confidence 111223345699999999985433332 44666666654332345899999999986421 223344443322334445
Q ss_pred hHHHHHhHHHHHHh
Q 027618 172 GATKLRDQQFEVDS 185 (221)
Q Consensus 172 ~~~~~~~~~~~~~~ 185 (221)
++....++.+.++.
T Consensus 151 Sa~~~~gi~~l~~~ 164 (199)
T 2gf0_A 151 SAKMNYNVKELFQE 164 (199)
T ss_dssp BTTTTBSHHHHHHH
T ss_pred ecCCCCCHHHHHHH
Confidence 55544444444443
No 85
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.69 E-value=1.2e-16 Score=119.08 Aligned_cols=152 Identities=13% Similarity=0.098 Sum_probs=93.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
.....+|+++|.+|+|||||+|++++.........+ +.......... .+. .+.+|||||...+...
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-------- 87 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPT---VFENFSHVMKY-KNEEFILHLWDTAGQEEYDRL-------- 87 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCC---SEEEEEEEEEE-TTEEEEEEEEEECCSGGGTTT--------
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCe---eeeeeEEEEEE-CCEEEEEEEEECCCcHHHHHH--------
Confidence 344589999999999999999999987642221111 11111122223 443 4689999997654322
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCC-----ChhhHHHHhccc-C
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED-----NDETLEDYLGRE-C 165 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~-----~~~~~~~~l~~~-~ 165 (221)
....+..+|++++|+|++++.+... ..|+..+..... ..|+++|+||+|+..+ ......++.... .
T Consensus 88 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (194)
T 3reg_A 88 ---RPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID---TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC 161 (194)
T ss_dssp ---GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTC
T ss_pred ---hHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCC
Confidence 2356788899999999986544444 455666655422 2489999999998642 123344444432 2
Q ss_pred CchhhhhHHHHHhHHHHHHh
Q 027618 166 PKPLKKGATKLRDQQFEVDS 185 (221)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~ 185 (221)
...+..++....++.+.++.
T Consensus 162 ~~~~~~Sa~~~~gi~~l~~~ 181 (194)
T 3reg_A 162 VAYIEASSVAKIGLNEVFEK 181 (194)
T ss_dssp SCEEECBTTTTBSHHHHHHH
T ss_pred CEEEEeecCCCCCHHHHHHH
Confidence 22555666655555555544
No 86
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.69 E-value=4.6e-18 Score=127.35 Aligned_cols=153 Identities=18% Similarity=0.153 Sum_probs=89.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
....+|+++|++|+|||||+|+|++........ .+.+.......+.+ .+ ..+.+|||||...+.....
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~------- 100 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITS------- 100 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHH--HHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCCSC-------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHH-------
Confidence 446899999999999999999999876532221 12223333344444 44 4688999999776543322
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchhh
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLK 170 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~ 170 (221)
..++.+|++++|+|+++..+... ..++..+..... ...|+++|+||+|+.... ......+........+.
T Consensus 101 ----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 174 (199)
T 3l0i_B 101 ----SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLE 174 (199)
T ss_dssp ----C--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCC
T ss_pred ----HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEE
Confidence 45678899999999986544333 344444443222 234899999999986421 12334444433334555
Q ss_pred hhHHHHHhHHHHHHh
Q 027618 171 KGATKLRDQQFEVDS 185 (221)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (221)
.++.....+.+.++.
T Consensus 175 vSA~~g~gv~~l~~~ 189 (199)
T 3l0i_B 175 TSAKNATNVEQSFMT 189 (199)
T ss_dssp CCC---HHHHHHHHH
T ss_pred EECCCCCCHHHHHHH
Confidence 666666666666554
No 87
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.69 E-value=2e-16 Score=114.32 Aligned_cols=114 Identities=12% Similarity=0.033 Sum_probs=75.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
.+|+++|++|+|||||+|++++...... .+|.......+.+ .+..+.+|||||...+ ......
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~~~ 63 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDKI-----------RPLWRH 63 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEEEC-SSCEEEEEECCCCGGG-----------HHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEEEE-CCEEEEEEEcCCChhh-----------HHHHHH
Confidence 3799999999999999999987664321 1122233344555 6788999999997531 123344
Q ss_pred hcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.++.+|++++|+|++++.+... ..++..+.... .....|+++|+||+|+..
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhcCCeEEEEEECcCCcC
Confidence 6688899999999986543332 23333332211 112348999999999875
No 88
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.69 E-value=1e-16 Score=134.61 Aligned_cols=130 Identities=20% Similarity=0.194 Sum_probs=86.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
.....+|+++|.+|+|||||+|++++....... ...++|.......+.+ .+..+.+|||||+.+.....+........
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-C------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccC-CCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHHHHH
Confidence 345689999999999999999999987643332 2334455554455556 77899999999986432111000000001
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
....++..+|++++|+|+.+.++..+..++..+.+. + .|+++|+||+|+...
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~-~----~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-G----KAVVIVVNKWDAVDK 321 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSCC
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCC
Confidence 111234556999999999988999988888887762 2 479999999998754
No 89
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.69 E-value=2.5e-16 Score=116.09 Aligned_cols=151 Identities=13% Similarity=0.055 Sum_probs=91.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
.....+|+++|.+|+|||||+|++++....... ...+ .....+.+ .+..+.+|||||...+...
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~t~~----~~~~~~~~-~~~~~~i~Dt~G~~~~~~~---------- 81 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG----SNVEEIVI-NNTRFLMWDIGGQESLRSS---------- 81 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEE-CCSS----SSCEEEEE-TTEEEEEEEESSSGGGTCG----------
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccC-CcCc----eeeEEEEE-CCEEEEEEECCCCHhHHHH----------
Confidence 445689999999999999999999988762221 1222 12234445 7789999999998653322
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhccc-----CCch
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGRE-----CPKP 168 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~-----~~~~ 168 (221)
....+..+|++++|+|++++.+... ..++..+.+... ....|+++|+||+|+.... ...+.+++... ....
T Consensus 82 -~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 159 (181)
T 2h17_A 82 -WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHI 159 (181)
T ss_dssp -GGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred -HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEE
Confidence 2356688899999999986655443 333433332211 1234899999999987521 23444444210 0123
Q ss_pred hhhhHHHHHhHHHHHH
Q 027618 169 LKKGATKLRDQQFEVD 184 (221)
Q Consensus 169 l~~~~~~~~~~~~~~~ 184 (221)
+..++....++.+.++
T Consensus 160 ~~~Sa~~g~gi~~l~~ 175 (181)
T 2h17_A 160 QACCALTGEGLCQGLE 175 (181)
T ss_dssp EECBTTTTBTHHHHHH
T ss_pred EEccCCCCcCHHHHHH
Confidence 4455555555555444
No 90
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=3.8e-16 Score=114.98 Aligned_cols=151 Identities=15% Similarity=0.052 Sum_probs=91.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
.+..+|+++|++|+|||||+|++++........ |.........+ .+..+.+|||||...+....
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~---------- 79 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKP-----TIGFNVETLSY-KNLKLNVWDLGGQTSIRPYW---------- 79 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECS-----STTCCEEEEEE-TTEEEEEEEEC----CCTTG----------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCC-----cCccceEEEEE-CCEEEEEEECCCCHhHHHHH----------
Confidence 456999999999999999999999776522211 11122334445 67889999999987644322
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhcccC-----Cchh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGREC-----PKPL 169 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~~-----~~~l 169 (221)
...+..+|++++|+|++++.+... ..++..+.... .....|+++|+||+|+.... ...+.+++.... ...+
T Consensus 80 -~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 157 (183)
T 1moz_A 80 -RCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE-ELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIV 157 (183)
T ss_dssp -GGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSS-TTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEE
T ss_pred -HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcCh-hhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEE
Confidence 245678899999999986655443 23333332211 02345899999999987521 234555543210 1234
Q ss_pred hhhHHHHHhHHHHHHh
Q 027618 170 KKGATKLRDQQFEVDS 185 (221)
Q Consensus 170 ~~~~~~~~~~~~~~~~ 185 (221)
..++....++.+.++.
T Consensus 158 ~~Sa~~~~gi~~l~~~ 173 (183)
T 1moz_A 158 ASSAIKGEGITEGLDW 173 (183)
T ss_dssp EEBGGGTBTHHHHHHH
T ss_pred EccCCCCcCHHHHHHH
Confidence 4666666666655554
No 91
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.69 E-value=3.8e-16 Score=115.38 Aligned_cols=117 Identities=14% Similarity=0.107 Sum_probs=79.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
.+..+|+++|++|+|||||+|++++.. . ... .+|.........+ .+..+.+|||||... ....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~-~~~---~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~-----------~~~~ 78 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-V-DTI---SPTLGFNIKTLEH-RGFKLNIWDVGGQKS-----------LRSY 78 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-C-SSC---CCCSSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-C-Ccc---cccCccceEEEEE-CCEEEEEEECCCCHh-----------HHHH
Confidence 456999999999999999999999876 2 211 1233344445556 788999999999743 2223
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....++.+|++++|+|++++.+... ..++..+.+... ....|+++|+||+|+..
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPG 133 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCCC
Confidence 3456788999999999986544433 233333332211 12358999999999875
No 92
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.69 E-value=5.4e-16 Score=114.92 Aligned_cols=117 Identities=13% Similarity=0.051 Sum_probs=79.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
.+..+|+++|++|+|||||+|++++.......+ |.........+ .+..+.+|||||...+.....
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~--------- 84 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVP-----TVGVNLETLQY-KNISFEVWDLGGQTGVRPYWR--------- 84 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECS-----STTCCEEEEEE-TTEEEEEEEECCSSSSCCCCS---------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCC-----CCceEEEEEEE-CCEEEEEEECCCCHhHHHHHH---------
Confidence 356999999999999999999998776532211 22233344555 678999999999876543322
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..++.+|++++|+|++++.+... ..++..+.... .....|+++|+||+|+..
T Consensus 85 --~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 85 --CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDED-ELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp --SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCS-TTTTCEEEEEEECTTSTT
T ss_pred --HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhh-hcCCCeEEEEEECCCCcC
Confidence 45678899999999986655443 23333332211 112348999999999876
No 93
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.69 E-value=9.6e-17 Score=121.62 Aligned_cols=153 Identities=12% Similarity=0.062 Sum_probs=89.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC-----------CceEEEEeCCCCCCCCCCc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-----------GQVVNVIDTPGLFDFSAGS 86 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------~~~~~liDtPG~~~~~~~~ 86 (221)
...+|+++|++|+|||||+|+|++........ ...........+.+.. ...+.+|||||..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~------ 95 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFI--TTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE------ 95 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEE--EEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH------
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCcCCC--CceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH------
Confidence 35799999999999999999999876522111 1111111222233311 3578999999942
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCC---hhhHHHHh
Q 027618 87 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELEDN---DETLEDYL 161 (221)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~~---~~~~~~~l 161 (221)
.+.......+..+|++++|+|+++..+... ...++....... ...|+++|+||+|+.... .....++.
T Consensus 96 -----~~~~~~~~~~~~~d~iilV~D~~~~~s~~~--~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~ 168 (217)
T 2f7s_A 96 -----RFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA 168 (217)
T ss_dssp -----HHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred -----hHHhHHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH
Confidence 233344456678899999999985433222 122333322111 245899999999986421 23445555
Q ss_pred cccCCchhhhhHHHHHhHHHHHHh
Q 027618 162 GRECPKPLKKGATKLRDQQFEVDS 185 (221)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~~~~~ 185 (221)
.......+..++.....+.+.++.
T Consensus 169 ~~~~~~~~~~Sa~~g~gi~~l~~~ 192 (217)
T 2f7s_A 169 DKYGIPYFETSAATGQNVEKAVET 192 (217)
T ss_dssp HHTTCCEEEEBTTTTBTHHHHHHH
T ss_pred HHCCCcEEEEECCCCCCHHHHHHH
Confidence 433334555666655556555554
No 94
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.69 E-value=1.9e-16 Score=117.37 Aligned_cols=154 Identities=21% Similarity=0.118 Sum_probs=88.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
.....+|+++|.+|+|||||+|++++.........+ +.......... .+ ..+.+|||||...+...
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~-------- 85 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPN---LEDTYSSEETV-DHQPVHLRVMDTADLDTPRNC-------- 85 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTT---CCEEEEEEEEE-TTEEEEEEEEECCC---CCCT--------
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCC---ccceeeEEEEE-CCEEEEEEEEECCCCCcchhH--------
Confidence 345689999999999999999999987642211111 11111122222 33 46789999998754321
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccccEEEEEecCCCCCCC---hhhHHHHhcccCCch
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKP 168 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~ 168 (221)
...+..+|++++|+|++++.+... ..|+..+...... ....|+++|+||+|+.... .....++..+.....
T Consensus 86 ----~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~ 161 (187)
T 3c5c_A 86 ----ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLF 161 (187)
T ss_dssp ----HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEE
T ss_pred ----HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcE
Confidence 124466799999999985444333 4455656554321 1234899999999985321 233445544322344
Q ss_pred hhhhH-HHHHhHHHHHHh
Q 027618 169 LKKGA-TKLRDQQFEVDS 185 (221)
Q Consensus 169 l~~~~-~~~~~~~~~~~~ 185 (221)
+..++ ....++.+.++.
T Consensus 162 ~e~Sa~~~g~gv~~lf~~ 179 (187)
T 3c5c_A 162 FEVSACLDFEHVQHVFHE 179 (187)
T ss_dssp EECCSSSCSHHHHHHHHH
T ss_pred EEEeecCccccHHHHHHH
Confidence 45555 444555554443
No 95
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.69 E-value=4.9e-16 Score=112.11 Aligned_cols=150 Identities=18% Similarity=0.161 Sum_probs=87.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
..+|+++|++|+|||||+|++++........ +.+.......... .+ ..+.+|||||..++.. .
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~-----------~ 67 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECD---PTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSA-----------M 67 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCC---TTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCCH-----------H
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccC---CccceEEEEEEEE-CCEEEEEEEEECCCchhhhH-----------H
Confidence 3689999999999999999999776432211 1111222222333 33 3578999999765321 1
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhhhhH
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKKGA 173 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~~~~ 173 (221)
....+..+|++++|+++++..+... ..++..+...... ...|+++|+||+|+.... .....++.+......+..++
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (166)
T 2ce2_X 68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSA 146 (166)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECT
T ss_pred HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecC
Confidence 1123344699999999985433232 4555556554332 134899999999976521 23344444432233444454
Q ss_pred HHHHhHHHHHH
Q 027618 174 TKLRDQQFEVD 184 (221)
Q Consensus 174 ~~~~~~~~~~~ 184 (221)
....++.+.++
T Consensus 147 ~~~~gi~~l~~ 157 (166)
T 2ce2_X 147 KTRQGVEDAFY 157 (166)
T ss_dssp TTCTTHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 44444444333
No 96
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.68 E-value=2.5e-16 Score=117.33 Aligned_cols=117 Identities=12% Similarity=0.048 Sum_probs=74.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
.+..+|+++|++|+|||||+|++++....... +|.......+.+ .+..+.+|||||...+...
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~-----~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~----------- 89 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEY-KNICFTVWDVGGQDKIRPL----------- 89 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEE-----EETTEEEEEEEE-TTEEEEEEECC-----CTT-----------
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccccC-----CcCceeEEEEEE-CCEEEEEEECCCCHhHHHH-----------
Confidence 45689999999999999999999887653221 132333444555 7789999999998654322
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....+..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+..
T Consensus 90 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 90 WRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDE-LRDAVLLVFANKQDMPN 144 (192)
T ss_dssp HHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccc-cCCCeEEEEEECCCCCC
Confidence 1234456799999999986544333 233333322111 12358999999999865
No 97
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=118.18 Aligned_cols=159 Identities=20% Similarity=0.122 Sum_probs=90.4
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHH
Q 027618 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVG 90 (221)
Q Consensus 13 ~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~ 90 (221)
+.+.....+|+++|.+|||||||+|++++.......... .+.......+.+ .+ ..+.+|||||...+ ..
T Consensus 17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~----~~-- 87 (195)
T 3cbq_A 17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPE--NPEDTYERRIMV-DKEEVTLVVYDIWEQGDA----GG-- 87 (195)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTT--SCTTEEEEEEEE-TTEEEEEEEECCCCCSGG----GH--
T ss_pred CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCC--cccceEEEEEEE-CCEEEEEEEEecCCCccc----hh--
Confidence 334556689999999999999999999875532222111 122222223333 44 35778999997642 11
Q ss_pred HHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhcccCC
Q 027618 91 KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECP 166 (221)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~ 166 (221)
.+.. .++..+|++++|+|++++.+... ..|+..+...... ...|+++|+||+|+..... ....++......
T Consensus 88 -~~~~---~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~ 162 (195)
T 3cbq_A 88 -WLRD---HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC 162 (195)
T ss_dssp -HHHH---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC
T ss_pred -hhHH---HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeechhccccCCcCHHHHHHHHHHhCC
Confidence 1111 23345699999999985443332 4555555543221 2348999999999864221 233444433223
Q ss_pred chhhhhHHHHHhHHHHHHh
Q 027618 167 KPLKKGATKLRDQQFEVDS 185 (221)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~~ 185 (221)
.++..++.....+.+.++.
T Consensus 163 ~~~e~Sa~~~~~v~~lf~~ 181 (195)
T 3cbq_A 163 KHIETSAALHHNTRELFEG 181 (195)
T ss_dssp EEEEEBTTTTBSHHHHHHH
T ss_pred EEEEEcCCCCCCHHHHHHH
Confidence 4455666655556555554
No 98
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.68 E-value=1e-16 Score=133.83 Aligned_cols=129 Identities=19% Similarity=0.162 Sum_probs=84.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
....+|+++|++|+|||||+|+|++....... ...++|.......+.+ .+..+.+|||||+.+.....+.+.......
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~-~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeec-CCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHH
Confidence 34589999999999999999999998753222 2334555555556666 778899999999865432111000000001
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
...++..+|++++|+|++++.+.++..++..+.+. ..|+++|+||+|+...
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDK 301 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCC
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc-----CCcEEEEEECccCCCc
Confidence 11234556999999999988998888777766542 2479999999998764
No 99
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.68 E-value=1.4e-16 Score=115.40 Aligned_cols=151 Identities=15% Similarity=0.096 Sum_probs=87.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
..+|+++|++|+|||||+|++++........ + .+........... ....+.+|||||...+... .
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~-~--t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-----------~ 68 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYD-P--TIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAM-----------R 68 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCC-C--CSEEEEEEEEESSSCEEEEEEEEECSSCSSTTH-----------H
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCC-C--CccceEEEEEEECCEEEEEEEEECCChHHHHHH-----------H
Confidence 4789999999999999999999865422211 1 1111111222221 2346889999998754321 1
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhccc-CCchhhhh
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRE-CPKPLKKG 172 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~-~~~~l~~~ 172 (221)
...+..+|++++|++++++.+... ..+++.+.+.... ...|+++|+||+|+.... .....++.... ....+..+
T Consensus 69 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (167)
T 1c1y_A 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESS 147 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECB
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEec
Confidence 123344699999999985433222 4555566554332 234899999999986421 23344444432 23344455
Q ss_pred HHHHHhHHHHHH
Q 027618 173 ATKLRDQQFEVD 184 (221)
Q Consensus 173 ~~~~~~~~~~~~ 184 (221)
+....++.+.++
T Consensus 148 a~~~~gi~~l~~ 159 (167)
T 1c1y_A 148 AKSKINVNEIFY 159 (167)
T ss_dssp TTTTBSHHHHHH
T ss_pred CCCCCCHHHHHH
Confidence 555545544444
No 100
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.68 E-value=5.9e-16 Score=120.43 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCch--HHHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIVKCI 97 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~~~~ 97 (221)
++|+++|.+|+|||||+|+|+|....... ..+.|.......+.+ .+..+.+|||||+.++..... ...+.+....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~--~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGN--WPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEE--CTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccC--CCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 58999999999999999999998753332 345666666677777 788999999999987653210 1222233222
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
. ....+|++++|+|+++ . .....+..++.+. ..|+++|+||+|...
T Consensus 79 ~-~~~~~d~vi~VvDas~-~-~~~~~l~~~l~~~-----~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 79 V-IDLEYDCIINVIDACH-L-ERHLYLTSQLFEL-----GKPVVVALNMMDIAE 124 (256)
T ss_dssp H-HHSCCSEEEEEEEGGG-H-HHHHHHHHHHTTS-----CSCEEEEEECHHHHH
T ss_pred H-hhCCCCEEEEEeeCCC-c-hhHHHHHHHHHHc-----CCCEEEEEEChhcCC
Confidence 1 1267899999999984 1 2223333333322 348999999999764
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.68 E-value=4.2e-16 Score=113.21 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=90.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
..+|+++|++|+|||||+|+|++....... ..+.|.......+.+ .+..+.+|||||...+.... ..+.+.....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~ 77 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDYI 77 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSS--HHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccC--CCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcc--hhHHHHHHHH
Confidence 378999999999999999999987643222 223344444444555 67889999999998754332 1122222211
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCh--hhHHHHhcccCCchhhhhHHHH
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND--ETLEDYLGRECPKPLKKGATKL 176 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~--~~~~~~l~~~~~~~l~~~~~~~ 176 (221)
. ...+|++++|+|+.+ . .....++..+.+. ..|+++|+||+|+..... ...+++........+..|+...
T Consensus 78 ~-~~~~~~~i~v~D~~~-~-~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 149 (165)
T 2wji_A 78 I-NEKPDLVVNIVDATA-L-ERNLYLTLQLMEM-----GANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKK 149 (165)
T ss_dssp H-HHCCSEEEEEEETTC-H-HHHHHHHHHHHHT-----TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGT
T ss_pred h-cCCCCEEEEEecCCc-h-hHhHHHHHHHHhc-----CCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCC
Confidence 1 135799999999984 2 1223344444431 348999999999753101 1233333322233455666665
Q ss_pred HhHHHHHHh
Q 027618 177 RDQQFEVDS 185 (221)
Q Consensus 177 ~~~~~~~~~ 185 (221)
.++.+.++.
T Consensus 150 ~~v~~l~~~ 158 (165)
T 2wji_A 150 MGIEELKKA 158 (165)
T ss_dssp BSHHHHHHH
T ss_pred CCHHHHHHH
Confidence 566555543
No 102
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.68 E-value=9.1e-16 Score=113.72 Aligned_cols=153 Identities=16% Similarity=0.130 Sum_probs=88.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
.+..+|+++|.+|+|||||+|+|++....... .+.+.........+ .+ ..+.+|||||...+.
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----------- 83 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEY---DPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYS----------- 83 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCC---CTTCCEEEEEEEEE-TTEEEEEEEEECCC----------------
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCcccc---CCccceEEEEEEEE-CCEEEEEEEEECCChHHHH-----------
Confidence 34579999999999999999999977543221 11122222233333 44 358899999965422
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC--ChhhHHHHhcccCCchhhh
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED--NDETLEDYLGRECPKPLKK 171 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~--~~~~~~~~l~~~~~~~l~~ 171 (221)
......+..+|++++|+++++..+..+ ..++..+...... ...|+++|+||+|+... ....+.++........+..
T Consensus 84 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 162 (190)
T 3con_A 84 AMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIET 162 (190)
T ss_dssp ------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEE
Confidence 223356678899999999985544333 4555555554331 13489999999997642 1234455554322344445
Q ss_pred hHHHHHhHHHHHHh
Q 027618 172 GATKLRDQQFEVDS 185 (221)
Q Consensus 172 ~~~~~~~~~~~~~~ 185 (221)
++....++.+.++.
T Consensus 163 Sa~~~~gi~~l~~~ 176 (190)
T 3con_A 163 SAKTRQGVEDAFYT 176 (190)
T ss_dssp CTTTCTTHHHHHHH
T ss_pred eCCCCCCHHHHHHH
Confidence 55554555544443
No 103
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.68 E-value=5.7e-16 Score=114.58 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=92.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
...+|+++|++|+|||||+|+|++....... ..+.|.......+.+ .+..+.+|||||...+..... .+.+....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~--~~~~~~~~ 80 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIARDY 80 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccC--CCCeeccceEEEEEe-CCcEEEEEECCCcCccccccH--HHHHHHHH
Confidence 4589999999999999999999987654332 234455555566666 788999999999987643221 12222221
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC--hhhHHHHhcccCCchhhhhHHH
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKKGATK 175 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~--~~~~~~~l~~~~~~~l~~~~~~ 175 (221)
... ..++++++|+|..+ + .....++..+.+ ...|+++|+||+|..... ....+++........+..++..
T Consensus 81 ~~~-~~~~~~i~v~d~~~-~-~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (188)
T 2wjg_A 81 IIN-EKPDLVVNIVDATA-L-ERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAK 152 (188)
T ss_dssp HHH-HCCSEEEEEEEGGG-H-HHHHHHHHHHHT-----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGG
T ss_pred Hhc-cCCCEEEEEecchh-H-HHHHHHHHHHHh-----cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecC
Confidence 111 24689999999873 2 122334433332 134799999999975311 1233444332223344455555
Q ss_pred HHhHHHHHHh
Q 027618 176 LRDQQFEVDS 185 (221)
Q Consensus 176 ~~~~~~~~~~ 185 (221)
..++.+.++.
T Consensus 153 ~~~v~~l~~~ 162 (188)
T 2wjg_A 153 KMGIEELKKA 162 (188)
T ss_dssp TBSHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 5455554443
No 104
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.67 E-value=3.7e-17 Score=124.33 Aligned_cols=122 Identities=20% Similarity=0.121 Sum_probs=79.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
......+|+++|.+|+|||||+|+++............+.+.......... ....+.+|||||...+.....
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~------- 82 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEKFGGLRD------- 82 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETT-EEEEEEEEEECSGGGTSCCCH-------
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCChHHHhHHHH-------
Confidence 345568999999999999999999654433222222333344443333322 345788999999765443322
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+..+|++++|+|++++.+... ..|+..+.+... ..|+++|+||+|+..
T Consensus 83 ----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 83 ----GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKD 133 (221)
T ss_dssp ----HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSS
T ss_pred ----HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCcccc
Confidence 34567899999999985444333 456666665432 348999999999864
No 105
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.67 E-value=2.6e-16 Score=116.24 Aligned_cols=118 Identities=15% Similarity=0.075 Sum_probs=76.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
....+|+++|++|+|||||+|++++....... .+.. .........+. ....+.+|||||...+...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-~~t~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------- 71 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENY-VPTV--FENYTASFEIDTQRIELSLWDTSGSPYYDNV---------- 71 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-CCCS--EEEEEEEEECSSCEEEEEEEEECCSGGGTTT----------
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCcc--ceeEEEEEEECCEEEEEEEEECCCChhhhhh----------
Confidence 45689999999999999999999987643221 1111 11111122221 2346889999997653322
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....+..+|++++|+|++++.+... ..|+..+.+... ..|+++|+||+|+..
T Consensus 72 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 72 -RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT 125 (184)
T ss_dssp -GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGG
T ss_pred -HHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhhc
Confidence 2246788899999999985544333 345566655432 348999999999864
No 106
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.67 E-value=2.3e-16 Score=116.79 Aligned_cols=149 Identities=19% Similarity=0.087 Sum_probs=93.0
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHH
Q 027618 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKE 92 (221)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~ 92 (221)
+..+..+|+++|++|+|||||+|++++....... .+ |.......+.+ .+ ..+.+|||||...+.
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~-~~---t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------- 81 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE-SP---EGGRFKKEIVV-DGQSYLLLIRDEGGPPELQ--------- 81 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC-CT---TCEEEEEEEEE-TTEEEEEEEEECSSSCCHH---------
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc-CC---CcceEEEEEEE-CCEEEEEEEEECCCChhhh---------
Confidence 3455689999999999999999999887653221 11 22222233444 44 356779999976421
Q ss_pred HHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC-----ChhhHHHHhcccC-
Q 027618 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-----NDETLEDYLGREC- 165 (221)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~-----~~~~~~~~l~~~~- 165 (221)
.+..+|++++|+|++++.+... ..|+..+..... ....|+++|+||+|+... ......++.....
T Consensus 82 -------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~ 153 (184)
T 3ihw_A 82 -------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKR 153 (184)
T ss_dssp -------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTT
T ss_pred -------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccccCHHHHHHHHHHcCC
Confidence 2334699999999986554444 456655554321 124589999999997421 1234455555422
Q ss_pred CchhhhhHHHHHhHHHHHHh
Q 027618 166 PKPLKKGATKLRDQQFEVDS 185 (221)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~ 185 (221)
..++..++....++.+.++.
T Consensus 154 ~~~~e~Sa~~~~gv~~lf~~ 173 (184)
T 3ihw_A 154 CTYYETCATYGLNVERVFQD 173 (184)
T ss_dssp CEEEEEBTTTTBTHHHHHHH
T ss_pred CeEEEecCCCCCCHHHHHHH
Confidence 34555666666666665554
No 107
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.67 E-value=3.7e-16 Score=117.65 Aligned_cols=118 Identities=16% Similarity=0.093 Sum_probs=76.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
.....+|+++|++|+|||||+|++++....... .+ |.... ...+.+. ....+.+|||||...+...
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~-~~---t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------- 92 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENY-VP---TVFENYTASFEIDTQRIELSLWDTSGSPYYDNV-------- 92 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-CC---CSEEEEEEEEESSSSEEEEEEEEECCSGGGTTT--------
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCc-CC---ccceeEEEEEEECCEEEEEEEEeCCCcHhhhHH--------
Confidence 345689999999999999999999987653221 11 11111 1222221 2347889999997653322
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....+..+|++++|+|++++.+... ..|+..+.+... ..|+++|+||+|+..
T Consensus 93 ---~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 93 ---RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT 146 (205)
T ss_dssp ---GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGG
T ss_pred ---HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhcc
Confidence 2246688899999999985444333 355566655432 348999999999864
No 108
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=5.8e-16 Score=115.22 Aligned_cols=116 Identities=17% Similarity=0.077 Sum_probs=78.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
...+|+++|++|+|||||++++++........ +.+.........+ .+ ..+.+|||||...+....
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~---~t~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~--------- 83 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYV---PTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLR--------- 83 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCC---CSSCCCEEEEEES-SSCEEEEEEECCCCSSSSTTTG---------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCC---CcccceeEEEEEE-CCEEEEEEEEECCCCcchhHHH---------
Confidence 45799999999999999999999875422211 1111111223333 33 468899999987654322
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
...+..+|++++|+|++++.+... ..|+..+.+... ..|+++|+||+|+..
T Consensus 84 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 84 --PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRD 136 (194)
T ss_dssp --GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTT
T ss_pred --HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 256788899999999985543333 256666666432 348999999999875
No 109
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.67 E-value=4.1e-16 Score=124.12 Aligned_cols=122 Identities=19% Similarity=0.239 Sum_probs=85.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCC-CCCCCchHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF-DFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~-~~~~~~~~~~~~~~~~~ 97 (221)
...|+++|++|+|||||+|+|+|....... ...+.|.......+.+ .+..+.++||||+. .+ ...+.+.+...+
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s-~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~ 82 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITS-RKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEE---KRAINRLMNKAA 82 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECC-CCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHH---HHHHHHHHTCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccC-CCCCcceeeEEEEEEE-CCeeEEEEECcCCCccc---hhhHHHHHHHHH
Confidence 468999999999999999999998764322 1223444444444555 77889999999986 21 111222333334
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..++..+|++++|+|+.+ ++..+...++.+.. ...|+++++||+|...
T Consensus 83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQ 130 (301)
T ss_dssp TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCC
T ss_pred HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCc
Confidence 566788899999999986 88887766555542 1348999999999875
No 110
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=1.2e-15 Score=112.92 Aligned_cols=151 Identities=13% Similarity=0.033 Sum_probs=90.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
.+..+|+++|++|+|||||+|++++....... . |.......+.+ .+..+.+|||||...+...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~----------- 76 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-P----TIGSNVEEIVI-NNTRFLMWDIGGQESLRSS----------- 76 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-C----CSCSSCEEEEE-TTEEEEEEECCC----CGG-----------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCc-C----CCccceEEEEE-CCEEEEEEECCCCHhHHHH-----------
Confidence 34589999999999999999999977654221 1 11122334445 6789999999998654321
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhccc-----CCchh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGRE-----CPKPL 169 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~-----~~~~l 169 (221)
....+..+|++++|+|++++.+... ..++..+.+... ....|+++|+||+|+.... ...+.+++... ....+
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 155 (187)
T 1zj6_A 77 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQ 155 (187)
T ss_dssp GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEE
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEE
Confidence 1234577899999999986655443 344444433211 1235899999999987521 23444444321 11234
Q ss_pred hhhHHHHHhHHHHHHh
Q 027618 170 KKGATKLRDQQFEVDS 185 (221)
Q Consensus 170 ~~~~~~~~~~~~~~~~ 185 (221)
..++....++.+.++.
T Consensus 156 ~~Sa~~g~gi~~l~~~ 171 (187)
T 1zj6_A 156 ACCALTGEGLCQGLEW 171 (187)
T ss_dssp ECBTTTTBTHHHHHHH
T ss_pred EccCCCCcCHHHHHHH
Confidence 4555555555554443
No 111
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.66 E-value=2.7e-16 Score=115.96 Aligned_cols=116 Identities=19% Similarity=0.081 Sum_probs=76.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
...+|+++|++|+|||||++++++.........+ +.......... .+ ..+.+|||||...+...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~---------- 69 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT---VFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRL---------- 69 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCC---SCCEEEEEEEE-TTEEEEEEEECCCCSGGGTTT----------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCc---ccceeEEEEEE-CCEEEEEEEEECCCCHhHHHH----------
Confidence 3589999999999999999999976543221111 11111222233 33 35679999998654322
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....+..+|++++|+|++++.+.... .++..+.+..+ ..|+++|+||+|+..
T Consensus 70 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 70 -RPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 123 (186)
T ss_dssp -GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHT
T ss_pred -HHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEcccccc
Confidence 22466788999999999865444442 46666665433 348999999999865
No 112
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.66 E-value=4.6e-16 Score=116.97 Aligned_cols=118 Identities=19% Similarity=0.093 Sum_probs=77.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
..+..+|+++|.+|+|||||++++++....... .+.+.........+ .+. .+.+|||||...+...
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~-------- 94 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY---IPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRL-------- 94 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-C---CCCSEEEEEEEEEC-C-CEEEEEEEEECCSGGGTTT--------
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc---CCeecceeEEEEEE-CCEEEEEEEEECCCchhhHHH--------
Confidence 455699999999999999999999976543221 11222222223333 343 4559999998654322
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....+..+|++++|+|++++.+.... .++..+.... ...|+++|+||+|+..
T Consensus 95 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 95 ---RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRD 148 (204)
T ss_dssp ---GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHT
T ss_pred ---HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhcc
Confidence 23567889999999999865544442 4666666543 2348999999999875
No 113
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.66 E-value=1.6e-15 Score=118.95 Aligned_cols=120 Identities=21% Similarity=0.241 Sum_probs=82.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
.++|+++|++|+|||||+|+|+|...... ...+.|.........+ .+..+.+|||||+.++...... ..+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~~- 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVG--NWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSID--ELIARNF- 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEE--ECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHH--HHHHHHH-
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccC--CCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHH--HHHHHHh-
Confidence 47999999999999999999999876322 2345666666666777 7888999999999976543321 1122211
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (221)
.....+|++++|+|+++ . .....++..+.+. + ..|+++|+||+|+.
T Consensus 77 ~~~~~~d~vi~v~D~~~-~-~~~~~~~~~~~~~-~---~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 77 ILDGNADVIVDIVDSTC-L-MRNLFLTLELFEM-E---VKNIILVLNKFDLL 122 (271)
T ss_dssp HHTTCCSEEEEEEEGGG-H-HHHHHHHHHHHHT-T---CCSEEEEEECHHHH
T ss_pred hhccCCcEEEEEecCCc-c-hhhHHHHHHHHhc-C---CCCEEEEEEChhcC
Confidence 22367899999999984 2 2223333333332 1 14899999999954
No 114
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.66 E-value=5.9e-16 Score=130.17 Aligned_cols=120 Identities=22% Similarity=0.282 Sum_probs=84.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCC-CCCCCchHH-HHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF-DFSAGSEFV-GKEIVKC 96 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~-~~~~~~~~~-~~~~~~~ 96 (221)
+.+|+++|.+|+|||||+|+|++....... ...++|.......+.+ .+..+.+|||||+. ++....+.. ......
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs-~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~- 319 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVT-DIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQ- 319 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCC-CSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHH-
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccC-CCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHHHH-
Confidence 378999999999999999999987643222 2345566666666666 78899999999997 543322211 111222
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.+..+|++++|+|+++..+..+..+++.+ . ..|+++|+||+|+..
T Consensus 320 ---~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~---~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 320 ---EIEKADIVLFVLDASSPLDEEDRKILERI----K---NKRYLVVINKVDVVE 364 (482)
T ss_dssp ---HHHHCSEEEEEEETTSCCCHHHHHHHHHH----T---TSSEEEEEEECSSCC
T ss_pred ---HhhcccEEEEEecCCCCCCHHHHHHHHHh----c---CCCEEEEEECccccc
Confidence 33455999999999877777665554433 2 248999999999865
No 115
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.66 E-value=8.3e-16 Score=115.04 Aligned_cols=128 Identities=16% Similarity=0.116 Sum_probs=78.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
.+..+|+++|++|||||||+|++++....... .|.......+.+ .+..+.+|||||...+...
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~-----~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~----------- 85 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-----PTLHPTSEELTI-AGMTFTTFDLGGHIQARRV----------- 85 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC----CCG-----------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccC-----CCCCceeEEEEE-CCEEEEEEECCCcHhhHHH-----------
Confidence 44589999999999999999999987643211 122222344555 6789999999997654321
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCC-ChhhHHHHhc
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLG 162 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~-~~~~~~~~l~ 162 (221)
....++.+|++++|+|++++.+... ..++..+.+.. .....|+++|+||+|+... ..+.+.+++.
T Consensus 86 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~ 152 (198)
T 1f6b_A 86 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPEAISEERLREMFG 152 (198)
T ss_dssp GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTTCCCHHHHHHHHT
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccccCCHHHHHHHhC
Confidence 2245677899999999986544333 33444333221 1124589999999998642 1345555554
No 116
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.66 E-value=7.1e-16 Score=115.58 Aligned_cols=117 Identities=18% Similarity=0.109 Sum_probs=77.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
....+|+++|.+|+|||||+|++++...........+.. .. ....+ .+ ..+.+|||||...+...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~--------- 89 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN--YI-ADIEV-DGKQVELALWDTAGQEDYDRL--------- 89 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCC--CE-EEEEE-TTEEEEEEEECCCCSGGGTTT---------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccce--EE-EEEEE-CCEEEEEEEEECCCchhHHHH---------
Confidence 445899999999999999999999876532221111111 11 12333 33 37889999997653322
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....+..+|++++|+|+++..+... ..++..+.+... ..|+++|+||+|+..
T Consensus 90 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 90 --RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRQ 143 (201)
T ss_dssp --GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGTT
T ss_pred --HHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhhc
Confidence 2246778899999999985433333 356666655422 348999999999876
No 117
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.66 E-value=1.9e-15 Score=112.00 Aligned_cols=118 Identities=17% Similarity=0.072 Sum_probs=77.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
.+..+|+++|++|+|||||+|++++....... ..|.......+.+ .+..+.+|||||... +...
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~ 83 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDM----IPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRSM 83 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----CCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCcc----CCCCceeEEEEEe-CCEEEEEEECCCCHh-----------HHHH
Confidence 44689999999999999999999977653211 1233333344555 788999999999643 1122
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....+..+|++++|+|+++..+... ..++..+.+... ....|+++|+||+|+..
T Consensus 84 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 84 WERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTT
T ss_pred HHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCCEEEEEECCCCcc
Confidence 3345578899999999985543333 233333322111 12358999999999875
No 118
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.66 E-value=3.6e-16 Score=118.04 Aligned_cols=117 Identities=19% Similarity=0.108 Sum_probs=77.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
....+|+++|++|+|||||++++++.........+.+ ......+.. .+ ..+.+|||||...+...
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~---~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~--------- 73 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF---DNFSANVAV-DGQIVNLGLWDTAGQEDYSRL--------- 73 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSC---CCEEEEEEC-SSCEEEEEEECCCCCCCCCC----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccc---eeEEEEEEE-CCEEEEEEEEECCCcHHHHHH---------
Confidence 3458999999999999999999997664222111111 111222333 33 47889999998765432
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....+..+|++++|+|++++.+... ..|+..+....+ ..|+++|+||+|+..
T Consensus 74 --~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 74 --RPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRD 127 (212)
T ss_dssp ---CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHT
T ss_pred --HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhh
Confidence 2246788899999999985444333 256666665432 348999999999765
No 119
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.66 E-value=9e-16 Score=122.52 Aligned_cols=126 Identities=20% Similarity=0.199 Sum_probs=84.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
..+|+++|++|+|||||+|++++....... ...+.|.........+..+..+.+|||||...+ ..........
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~~~~ 75 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDT-RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF------MENYFTKQKD 75 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGG-GGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH------HHHHHTTTHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccc-cCcCCccceEEEEEEeCCceEEEEEECCCcHHH------hhhhhhhHHH
Confidence 479999999999999999999887432221 123455555555555435678999999996532 0111122334
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..++.+|++++|+|+++..+..+ ..+.+++.+........|+++|+||+|+..
T Consensus 76 ~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 76 HIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 55678899999999996665555 344555555432222358999999999875
No 120
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.66 E-value=7.2e-16 Score=116.74 Aligned_cols=116 Identities=21% Similarity=0.152 Sum_probs=65.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
...+|+++|++|+|||||+|++++........ + .+.......... .+. .+.+|||||...+. .
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~-~--t~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~-----------~ 97 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYT-P--TVFERYMVNLQV-KGKPVHLHIWDTAGQDDYD-----------R 97 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------C-C--CCCEEEEEEEEE-TTEEEEEEEEEC-------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCC-C--ccceeEEEEEEE-CCEEEEEEEEECCCchhhh-----------H
Confidence 45899999999999999999999876532211 1 111121222333 333 68899999976432 2
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.....+..+|++++|+|++++.+... ..|+..+..... ..|+++|+||+|+..
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK---KVPIIVVGCKTDLRK 152 (214)
T ss_dssp -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECGGGGS
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhhc
Confidence 22345678899999999985444333 245666655422 348999999999875
No 121
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=8.1e-16 Score=114.71 Aligned_cols=153 Identities=18% Similarity=0.071 Sum_probs=88.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
.....+|+++|++|+|||||+|++++........ +...+ .......+ .+ ..+.+|||||... .
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-~t~~~--~~~~~~~~-~~~~~~~~l~Dt~G~~~-----~------ 89 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYD-PTLES--TYRHQATI-DDEVVSMEILDTAGQED-----T------ 89 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCC-TTCCE--EEEEEEEE-TTEEEEEEEEECCCCCC-----C------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccC-CCCCc--eEEEEEEE-CCEEEEEEEEECCCCCc-----c------
Confidence 3556899999999999999999999876532211 11111 11222333 33 4688999999875 1
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC---hhhHHHHhcccCCchh
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPL 169 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l 169 (221)
......+..+|++++|+|++++.+... ..++..+.+.... ...|+++|+||+|+.... .....++........+
T Consensus 90 -~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 167 (196)
T 2atv_A 90 -IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFY 167 (196)
T ss_dssp -HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEE
T ss_pred -cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEE
Confidence 111223344599999999985433322 4556666554322 234899999999986421 1233344432222344
Q ss_pred hhhHHHHH-hHHHHHHh
Q 027618 170 KKGATKLR-DQQFEVDS 185 (221)
Q Consensus 170 ~~~~~~~~-~~~~~~~~ 185 (221)
..++.... ++.+.++.
T Consensus 168 ~~Sa~~g~~gi~~l~~~ 184 (196)
T 2atv_A 168 ECSACTGEGNITEIFYE 184 (196)
T ss_dssp ECCTTTCTTCHHHHHHH
T ss_pred EECCCcCCcCHHHHHHH
Confidence 45555444 45554443
No 122
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=6.6e-16 Score=116.27 Aligned_cols=116 Identities=19% Similarity=0.139 Sum_probs=75.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
...+|+++|++|+|||||+|++++.......... +.......... .+ ..+.+|||||...+....
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~--------- 90 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPT---VFENYVADIEV-DGKQVELALWDTAGQEDYDRLR--------- 90 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC----------CCEEEEEEEE-TTEEEEEEEEECTTCTTCTTTG---------
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCc---ccceEEEEEEE-CCEEEEEEEEECCCcHHHHHHH---------
Confidence 3479999999999999999999987653221111 11111122333 33 468899999987654222
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
...+..+|++++|+|+++..+... ..++..+.+... ..|+++|+||+|+..
T Consensus 91 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 91 --PLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLRS 143 (207)
T ss_dssp --GGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGGG
T ss_pred --HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhhc
Confidence 246678899999999985433222 456666665422 348999999999875
No 123
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.65 E-value=2.9e-15 Score=110.42 Aligned_cols=151 Identities=15% Similarity=0.055 Sum_probs=91.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
....+|+++|++|+|||||++++++....... .|.......+.+ .+..+.+|||||...+ ...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~-----~t~g~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~ 76 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKSVQS-QGFKLNVWDIGGQRKI-----------RPY 76 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-----EETTEEEEEEEE-TTEEEEEEECSSCGGG-----------HHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCccc-----CcCCeEEEEEEE-CCEEEEEEECCCCHHH-----------HHH
Confidence 45689999999999999999999987542211 122223334555 6788999999997531 122
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhccc-----CCchh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGRE-----CPKPL 169 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~-----~~~~l 169 (221)
....+..+|++++|+|++++.+... ..++..+.+... ....|+++|+||+|+.... ...+.+.+... ....+
T Consensus 77 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (181)
T 1fzq_A 77 WRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQ 155 (181)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEE
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEE
Confidence 3345678899999999986544333 233333322111 1234899999999987532 12333333210 11233
Q ss_pred hhhHHHHHhHHHHHHh
Q 027618 170 KKGATKLRDQQFEVDS 185 (221)
Q Consensus 170 ~~~~~~~~~~~~~~~~ 185 (221)
..++....++.+.++.
T Consensus 156 ~~Sa~~g~gi~~l~~~ 171 (181)
T 1fzq_A 156 SCSALTGEGVQDGMNW 171 (181)
T ss_dssp ECCTTTCTTHHHHHHH
T ss_pred EccCCCCCCHHHHHHH
Confidence 4566555555555554
No 124
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.65 E-value=2.6e-16 Score=115.65 Aligned_cols=118 Identities=18% Similarity=0.074 Sum_probs=71.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
....+|+++|++|+|||||++++++...........+... ...... .....+.+|||||...+....
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------- 73 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF---SANVVVNGATVNLGLWDTAGQEDYNRLR--------- 73 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C---BCCCC-------CEEECCCC-CTTTTTG---------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE---EEEEEECCEEEEEEEEECCCChhhhhhH---------
Confidence 3458999999999999999999997664222111111010 011111 023456699999987644222
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
...+..+|++++|+|++++.+... ..|+..+..... ..|+++|+||+|+..
T Consensus 74 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 74 --PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRD 126 (182)
T ss_dssp --GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHT
T ss_pred --HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhc
Confidence 246678899999999985444333 246666665432 348999999999765
No 125
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.64 E-value=3.3e-15 Score=112.85 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=73.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
....+|+++|++|+|||||++++++....... .+.+ .....+.+.. +..+.+|||||... +.
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~ 68 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ---TSIT--DSSAIYKVNNNRGNSLTLIDLPGHES-----------LR 68 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBC---CCCS--CEEEEEECSSTTCCEEEEEECCCCHH-----------HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccc---CCcc--eeeEEEEecCCCccEEEEEECCCChh-----------HH
Confidence 34589999999999999999999987643222 1112 2222344412 56799999999752 11
Q ss_pred H-HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhc----ccccccEEEEEecCCCCC
Q 027618 95 K-CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 95 ~-~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~ivv~tk~D~~~ 151 (221)
. .....++.+|++++|+|+++ +........+.+.+.+. .....|+++|+||+|+..
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 69 FQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129 (214)
T ss_dssp HHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred HHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence 2 23334677899999999984 32223333333333221 122358999999999875
No 126
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.64 E-value=1.7e-16 Score=131.35 Aligned_cols=127 Identities=20% Similarity=0.189 Sum_probs=85.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
....++|+++|++|+|||||+|+|++....... ...+.|.........+.....+.+|||||+.++........+.
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~--- 106 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEK--- 106 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHH---
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHH---
Confidence 455689999999999999999999998753222 3345566666666666233489999999998765432221222
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCh
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND 154 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 154 (221)
....+..+|++++|+|+ .....+..++..+.+. ..|+++|+||+|+.....
T Consensus 107 -~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~~ 157 (423)
T 3qq5_A 107 -ARRVFYRADCGILVTDS--APTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEKA 157 (423)
T ss_dssp -HHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCCC
T ss_pred -HHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCccH
Confidence 23345678999999998 5667778888888775 347999999999886433
No 127
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.64 E-value=2.9e-16 Score=131.47 Aligned_cols=121 Identities=23% Similarity=0.245 Sum_probs=77.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
+.+|+++|++|+|||||+|+|++....... ...++|.......+.+ .+..+.+|||||+.++....+ ........
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~~ve---~~gi~~~~ 298 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVT-DLPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSDQVE---KIGVERSR 298 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCS-CCTTCCHHHHHHEEEE-TTEEEEECC-----------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCeeEEEEEEEEEE-CCEEEEEEECCccccchhHHH---HHHHHHHh
Confidence 468999999999999999999987643222 2234455554445556 788999999999875322111 11122234
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+..+|++++|+|++++.+..+..+++.+.. .|+++|+||+|+..
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~ 344 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVE 344 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSC
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCc
Confidence 56688999999999998888877666655532 38999999999875
No 128
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.63 E-value=2.3e-15 Score=121.26 Aligned_cols=150 Identities=14% Similarity=0.016 Sum_probs=89.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
...+|+++|.+|+|||||+|+|++....... .|.......+.+ .+..+.+|||||...+... .
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-----pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~-----------~ 226 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEY-KNISFTVWDVGGQDKIRPL-----------W 226 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-----EETTEEEEEEEE-TTEEEEEEECC-----CCS-----------H
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-----cccceEEEEEec-CcEEEEEEECCCCHhHHHH-----------H
Confidence 3468999999999999999999987753221 244455555666 7889999999996654332 2
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhcccC-----Cchhh
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGREC-----PKPLK 170 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~~-----~~~l~ 170 (221)
...+..+|++++|+|+++.-+... ..++..+..... ....|+++|+||+|+.... ...+...+.... ...+.
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 305 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQA 305 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEE
T ss_pred HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhc-cCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEE
Confidence 245577899999999986555443 222222222111 1234899999999987532 223333332111 11334
Q ss_pred hhHHHHHhHHHHHHh
Q 027618 171 KGATKLRDQQFEVDS 185 (221)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (221)
.++....++.+.++.
T Consensus 306 vSAk~g~gi~el~~~ 320 (329)
T 3o47_A 306 TCATSGDGLYEGLDW 320 (329)
T ss_dssp CBTTTTBTHHHHHHH
T ss_pred EECCCCcCHHHHHHH
Confidence 555555555555554
No 129
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.2e-15 Score=113.32 Aligned_cols=121 Identities=10% Similarity=0.115 Sum_probs=71.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
....+|+++|++|+|||||+|+|++........... .+.. ..+ ....+.+|||||...+..... ..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~-~~~~-----~~~-~~~~~~l~Dt~G~~~~~~~~~-------~~ 111 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSA-----ADY-DGSGVTLVDFPGHVKLRYKLS-------DY 111 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCCHH-------HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCC-Ccee-----eee-cCCeEEEEECCCCchHHHHHH-------HH
Confidence 456899999999999999999999876432111111 1111 112 456788999999876543221 22
Q ss_pred HHhhcCCCcEEEEEEeCC-CCCCHHH-HHHHHHHHHHhc--ccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVR-SRFSQEE-EAALHSLQTLFG--KKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~-~~~~~~~-~~~~~~l~~~~~--~~~~~~~ivv~tk~D~~~ 151 (221)
+......+|++++|+|++ +.-+... ..++..+..... .....|+++|+||+|+..
T Consensus 112 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 112 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp HHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred HHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 333334569999999988 2222111 233333322211 112358999999999876
No 130
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.63 E-value=4.2e-15 Score=121.18 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=82.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC--------------------------------------------
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-------------------------------------------- 53 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~-------------------------------------------- 53 (221)
.-+.|+++|++|||||||+|+|+|....+.+.....
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 446999999999999999999999876433321110
Q ss_pred --------cceeeEEEEEEeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHH
Q 027618 54 --------VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA 123 (221)
Q Consensus 54 --------~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~ 123 (221)
.........+..+....+.+|||||+..+.. ........+...+..++..+|++++|++.. ........
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~-~~~~~~~~ 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPA-NQDLATSD 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEET-TSCGGGCH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecc-cCCcCCHH
Confidence 0000001111222345789999999987532 123345566666667778899999998764 22222234
Q ss_pred HHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 124 ALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 124 ~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
++..++.... ...|+++|+||+|+...
T Consensus 192 ~~~l~~~~~~--~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 192 AIKISREVDP--SGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHHHHSCT--TCTTEEEEEECGGGCCT
T ss_pred HHHHHHHhcc--cCCCEEEEEeCCccCCC
Confidence 4555554422 13379999999998863
No 131
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.63 E-value=4.5e-16 Score=125.62 Aligned_cols=125 Identities=18% Similarity=0.135 Sum_probs=81.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
.|+|+|.++||||||+|+|++...... .....|..+....+.+.....+.++||||+.+.......+...+.+.+..
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~--~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~- 236 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIA--DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER- 236 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEES--STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH-
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccc--cCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHh-
Confidence 589999999999999999998754222 22344555555666663347899999999754222222233444444333
Q ss_pred cCCCcEEEEEEeCCC---CCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 101 KDGIHAVLVVFSVRS---RFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 101 ~~~~~~il~v~~~~~---~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
++++++|+|+++ +-...+ ..+...+..........|+++|+||+|+..
T Consensus 237 ---~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 237 ---TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE 288 (342)
T ss_dssp ---CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred ---ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC
Confidence 499999999985 222223 445555555422123458999999999875
No 132
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.62 E-value=2e-15 Score=120.79 Aligned_cols=130 Identities=15% Similarity=0.151 Sum_probs=76.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCC---CC---ccee---------------------------------
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS---SG---VTST--------------------------------- 57 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~---~~---~t~~--------------------------------- 57 (221)
...++|+++|.+|+|||||+|+|+|....+.+... .+ .+..
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 34579999999999999999999998763222110 00 0000
Q ss_pred ------------------eEEEEEEeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHHhhcCCCcEEEEEEeC-CCC
Q 027618 58 ------------------CEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVLVVFSV-RSR 116 (221)
Q Consensus 58 ------------------~~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il~v~~~-~~~ 116 (221)
.....+..+.+..+.+|||||+..... ........+...+..++..+|++++|++. +..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 000011222446899999999975221 11122334555555666778999999986 434
Q ss_pred CCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 117 FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 117 ~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+...+ ..+++.+.. ...|+++|+||+|+..
T Consensus 182 ~~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~ 212 (315)
T 1jwy_B 182 LANSDALQLAKEVDP-----EGKRTIGVITKLDLMD 212 (315)
T ss_dssp STTCSHHHHHHHHCS-----SCSSEEEEEECTTSSC
T ss_pred hhhhHHHHHHHHhCC-----CCCcEEEEEcCcccCC
Confidence 44333 244444332 2348999999999886
No 133
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.62 E-value=1.8e-15 Score=111.96 Aligned_cols=134 Identities=17% Similarity=0.173 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH---
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC--- 96 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~--- 96 (221)
.+|+++|++|+|||||+|++++....... ..+.|..... ..+ . .+.++||||+.....-.......+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~t~~~~~--~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGK--RPGVTRKIIE--IEW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSS--STTCTTSCEE--EEE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCC--CCCccceeEE--Eec-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 57999999999999999999988743221 2233333322 223 2 788999999865443332222233322
Q ss_pred -HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHH--------HHHHhcccccccEEEEEecCCCCCCChhhHHHHhc
Q 027618 97 -IGMAKDGIHAVLVVFSVRSRFSQEEEAALHS--------LQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (221)
Q Consensus 97 -~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~--------l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~ 162 (221)
+......++++++|++.. .+......|... +...... ...|+++|+||+|+........+++..
T Consensus 75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~ 147 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRE-LDIPTIVAVNKLDKIKNVQEVINFLAE 147 (190)
T ss_dssp HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHH-TTCCEEEEEECGGGCSCHHHHHHHHHH
T ss_pred HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHh-cCCceEEEeehHhccCcHHHHHHHHHH
Confidence 222244556777777765 222111222211 1111111 234899999999987632223444433
No 134
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.62 E-value=2.3e-15 Score=125.83 Aligned_cols=127 Identities=20% Similarity=0.184 Sum_probs=79.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH-HH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV-KC 96 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~-~~ 96 (221)
...+|+++|++|||||||+|+|+|....... ...++|..+....+.+ .+..+.+|||||+........+....+. ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~-~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVS-PIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-CCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccC-CCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 4589999999999999999999998653222 2344555555566666 7888999999998542211100000000 00
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....+..+|++++|+|+.++.+..+..+.+.+.+. ..|+++|+||+|...
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~-----~~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMERR-----GRASVVVFNKWDLVV 306 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGST
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCC
Confidence 11233456999999999878887776655555432 237999999999876
No 135
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.60 E-value=4.9e-15 Score=126.01 Aligned_cols=120 Identities=15% Similarity=0.189 Sum_probs=86.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccc----------------cc----cCCCCcceeeEEEEEEeeCCceEEEEeC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK----------------SR----ASSSGVTSTCEMQRTVLKDGQVVNVIDT 76 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~----------------~~----~~~~~~t~~~~~~~~~~~~~~~~~liDt 76 (221)
...++|+++|++|+|||||+|+|++..... .. ....+.|.........+ .+..+.+|||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDT 89 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDT 89 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEEC
Confidence 345899999999999999999997322110 00 00123444555556667 8889999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (221)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (221)
||+.++.. .+..+++.+|++++|+|+.+.........+..+... ..|+++|+||+|+...+
T Consensus 90 PG~~df~~-----------~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-----~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 90 PGHADFTE-----------DTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-----HTPIMTFINKMDRDTRP 150 (528)
T ss_dssp CCSTTCCH-----------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-----TCCEEEEEECTTSCCSC
T ss_pred CCchhHHH-----------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCcccc
Confidence 99987642 233566778999999999988888887777666543 23799999999987533
No 136
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.60 E-value=1.7e-14 Score=114.42 Aligned_cols=130 Identities=14% Similarity=0.109 Sum_probs=77.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCC---CC-----------------------ccee-------------
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS---SG-----------------------VTST------------- 57 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~---~~-----------------------~t~~------------- 57 (221)
...++|+++|.+|+|||||+|+|+|....+..... .+ .|..
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45589999999999999999999998763221100 00 0000
Q ss_pred ----------eEEEEEEeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHHhhcCCCcEEE-EEEeCCCCCCHHHH-H
Q 027618 58 ----------CEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVL-VVFSVRSRFSQEEE-A 123 (221)
Q Consensus 58 ----------~~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il-~v~~~~~~~~~~~~-~ 123 (221)
........+....+.+|||||+..... ..+.....+...+..++..++.++ +|++++..++..+. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 001111121246899999999975321 012222334444444555666655 78999866665553 3
Q ss_pred HHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 124 ALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 124 ~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+++.+.. ...|+++|+||+|+..
T Consensus 184 ~~~~~~~-----~~~~~i~V~NK~Dl~~ 206 (299)
T 2aka_B 184 IAKEVDP-----QGQRTIGVITKLDLMD 206 (299)
T ss_dssp HHHHHCT-----TCSSEEEEEECGGGSC
T ss_pred HHHHhCC-----CCCeEEEEEEccccCC
Confidence 3333321 1348999999999875
No 137
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.60 E-value=6.7e-15 Score=119.72 Aligned_cols=122 Identities=15% Similarity=0.161 Sum_probs=86.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
-+|+++|.|+||||||+|+|++..... ....++|..+....+.+ .+.++.++||||+............++...+..
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v--~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEA--AEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCG--GGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 689999999999999999999987433 34567888888888888 899999999999986544444455555555555
Q ss_pred hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccc-ccccEEEEEecCCCC
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK-IFDYMIVVFTGGDEL 150 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ivv~tk~D~~ 150 (221)
+ |++++|+|++++.. +...+..-.+.++.. ...|.++++||.|+.
T Consensus 150 a----d~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 150 C----NLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp C----SEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred c----CccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 4 99999999985432 233333322333432 344788999999973
No 138
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.59 E-value=7.9e-15 Score=124.43 Aligned_cols=151 Identities=14% Similarity=0.063 Sum_probs=97.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
....+|+++|.+|+|||||+|+|++..... ...|.......+.+ .+..+.+|||||...+.. .
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-----~~~T~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~-----------~ 382 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-----TIPTVGFNVETVTY-KNVKFNVWDVGGQDKIRP-----------L 382 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-----CCCCSSEEEEEEES-SSCEEEEEEECCCGGGSG-----------G
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-----cCCccceeEEEEEe-CCEEEEEEECCCcHHHHH-----------H
Confidence 345899999999999999999999876321 12355555666666 788999999999765432 1
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhcccC-----Cchh
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGREC-----PKPL 169 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~~-----~~~l 169 (221)
...++..+|++|+|+|++++.+... ..++..+.+... ....|+++|+||+|+.... ...+.+.+.... ...+
T Consensus 383 ~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (497)
T 3lvq_E 383 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-MRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQ 461 (497)
T ss_dssp GGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGG-GTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEE
T ss_pred HHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhh-cCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEE
Confidence 3356788999999999986544433 233333322111 1234899999999986521 233444433110 1134
Q ss_pred hhhHHHHHhHHHHHHh
Q 027618 170 KKGATKLRDQQFEVDS 185 (221)
Q Consensus 170 ~~~~~~~~~~~~~~~~ 185 (221)
..++....++.+.++.
T Consensus 462 ~~SA~~g~gi~~l~~~ 477 (497)
T 3lvq_E 462 PSCATSGDGLYEGLTW 477 (497)
T ss_dssp ECBTTTTBTHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 4666666666666654
No 139
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.59 E-value=1.2e-14 Score=113.96 Aligned_cols=118 Identities=17% Similarity=0.176 Sum_probs=76.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (221)
..+|+++|++|+|||||+|+|+|....... ..+.|.......+.+ +..+.+|||||..++..... .+.+.....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~--~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGN--WPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSP--EAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCS--SSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSH--HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCCh--HHHHHHHHH
Confidence 478999999999999999999997643232 234455444444332 66899999999987643321 122222221
Q ss_pred hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (221)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (221)
. ...+|++++|+|+++ . .....+...+.+. ..|+++++||+|..
T Consensus 77 ~-~~~~d~vi~V~D~t~-~-e~~~~~~~~l~~~-----~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 77 L-SQRADSILNVVDATN-L-ERNLYLTTQLIET-----GIPVTIALNMIDVL 120 (272)
T ss_dssp H-TTCCSEEEEEEEGGG-H-HHHHHHHHHHHHT-----CSCEEEEEECHHHH
T ss_pred h-cCCCCEEEEEecCCc-h-HhHHHHHHHHHhc-----CCCEEEEEEChhhC
Confidence 1 146899999999984 2 2223344444431 34799999999975
No 140
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=3.6e-14 Score=107.20 Aligned_cols=154 Identities=19% Similarity=0.083 Sum_probs=88.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
...+|+++|.+|+|||||+|++++... +.....+.+.+ .....+.+ .+. .+.++||+|... . ..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d--~~~~~i~~-~~~~~~l~~~Dt~g~~~-----~-----~~ 102 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGED--TYERTLMV-DGESATIILLDMWENKG-----E-----NE 102 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTT--EEEEEEEE-TTEEEEEEEECCTTTTH-----H-----HH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCcccee--eEEEEEEE-CCeeeEEEEeecCCCcc-----h-----hh
Confidence 447999999999999999999997543 11211122222 22223334 443 467899998542 0 11
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCh---hhHHHHhcccCCchhh
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLK 170 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~ 170 (221)
.....+++.++++++|++++++-+... ..|...+.+... ....|+++|+||+|+..... .....+.....-.++.
T Consensus 103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e 181 (211)
T 2g3y_A 103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIE 181 (211)
T ss_dssp HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEE
Confidence 122345678899999999986544333 334444443211 12348999999999864211 1122232222224455
Q ss_pred hhHHHHHhHHHHHHh
Q 027618 171 KGATKLRDQQFEVDS 185 (221)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (221)
.++....++.+.++.
T Consensus 182 ~SAk~g~~v~elf~~ 196 (211)
T 2g3y_A 182 TSAAVQHNVKELFEG 196 (211)
T ss_dssp CBTTTTBSHHHHHHH
T ss_pred EeCCCCCCHHHHHHH
Confidence 677666667666665
No 141
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.58 E-value=1.7e-14 Score=107.41 Aligned_cols=154 Identities=18% Similarity=0.099 Sum_probs=86.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
...+|+++|.+|||||||+|++++... +.....+.+.+ .....+.+ .+. .+.++||+|....... +
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~~-------~- 73 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGED--TYERTLMV-DGESATIILLDMWENKGENEW-------L- 73 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTT--EEEEEEEE-TTEEEEEEEECCCCC----CT-------T-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccccccee--EEEEEEEE-CCeEEEEEEEEeccCcchhhh-------H-
Confidence 348999999999999999999996432 11111111222 22223334 444 4578999986531000 0
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCChh---hHHHHhcccCCchhh
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDE---TLEDYLGRECPKPLK 170 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~---~~~~~l~~~~~~~l~ 170 (221)
...+++.+|++++|++++++-+... ..++..+.+.... ...|+++|+||+|+...... ....+.......++.
T Consensus 74 --~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e 150 (192)
T 2cjw_A 74 --HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIE 150 (192)
T ss_dssp --GGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred --HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEE
Confidence 1123344699999999986544443 3455555554221 23489999999997532111 112222222234556
Q ss_pred hhHHHHHhHHHHHHh
Q 027618 171 KGATKLRDQQFEVDS 185 (221)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (221)
.|+....++.+.++.
T Consensus 151 ~SA~~g~~v~~lf~~ 165 (192)
T 2cjw_A 151 TSAAVQHNVKELFEG 165 (192)
T ss_dssp CBTTTTBSHHHHHHH
T ss_pred eccccCCCHHHHHHH
Confidence 777777777777765
No 142
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.58 E-value=1.5e-14 Score=109.56 Aligned_cols=122 Identities=10% Similarity=0.128 Sum_probs=73.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
.....+|+++|++|+|||||+|+|++.......... ..+... .+ ....+.+|||||...+. ..+..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~-~~~~~~-----~~-~~~~~~l~Dt~G~~~~~-------~~~~~ 74 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ-EPLSAA-----DY-DGSGVTLVDFPGHVKLR-------YKLSD 74 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCS-SCEEET-----TG-GGSSCEEEECCCCGGGT-------HHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeec-CceEEE-----Ee-eCceEEEEECCCcHHHH-------HHHHH
Confidence 345689999999999999999999987643221111 111111 12 45678899999986532 12223
Q ss_pred HHHhhcCCCcEEEEEEeCC-CCCCHH-HHHHHHHHHHHhc--ccccccEEEEEecCCCCC
Q 027618 96 CIGMAKDGIHAVLVVFSVR-SRFSQE-EEAALHSLQTLFG--KKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~-~~~~~~-~~~~~~~l~~~~~--~~~~~~~ivv~tk~D~~~ 151 (221)
++......+|++++|+|+. +.-+.. ...++..+..... .....|+++|+||+|+..
T Consensus 75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 134 (218)
T 1nrj_B 75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 134 (218)
T ss_dssp HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence 3333334469999999998 333322 2334433333211 112358999999999876
No 143
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.58 E-value=4.4e-15 Score=127.01 Aligned_cols=127 Identities=20% Similarity=0.320 Sum_probs=77.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceee-EEE----------------------------------
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC-EMQ---------------------------------- 61 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~-~~~---------------------------------- 61 (221)
....+|+++|.+|+|||||+|+|+|........+..+.|... ...
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 456899999999999999999999987631111111111111 000
Q ss_pred --EEEeeCC---ceEEEEeCCCCCCCCCCchHHHHH--HHHHHHhhcCCCcEEEEEEeCCC-CCCHHHHHHHHHHHHHhc
Q 027618 62 --RTVLKDG---QVVNVIDTPGLFDFSAGSEFVGKE--IVKCIGMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFG 133 (221)
Q Consensus 62 --~~~~~~~---~~~~liDtPG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~il~v~~~~~-~~~~~~~~~~~~l~~~~~ 133 (221)
...+ .+ ..+.||||||+.+.... .+.+. +...+...+..+|++++|+|+.. .....+..+++.+...
T Consensus 143 ~~~~~~-~~~ll~~l~lIDTPG~~~~~~~--~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-- 217 (550)
T 2qpt_A 143 FMCAQL-PNQVLESISIIDTPGILSGAKQ--RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH-- 217 (550)
T ss_dssp EEEEEC-CCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--
T ss_pred ceEEec-cccccCCEEEEECcCCCCcchh--HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--
Confidence 0001 00 36899999999852111 01110 22333334456799999999985 3666667776665432
Q ss_pred ccccccEEEEEecCCCCC
Q 027618 134 KKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 134 ~~~~~~~ivv~tk~D~~~ 151 (221)
..|+++|+||+|+..
T Consensus 218 ---~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 218 ---EDKIRVVLNKADMVE 232 (550)
T ss_dssp ---GGGEEEEEECGGGSC
T ss_pred ---CCCEEEEEECCCccC
Confidence 237999999999986
No 144
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.57 E-value=4.3e-14 Score=117.91 Aligned_cols=119 Identities=13% Similarity=0.159 Sum_probs=81.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc-------------------------------cCCCCcceeeEEEEEEe
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------------------------ASSSGVTSTCEMQRTVL 65 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~ 65 (221)
....+|+++|+.++|||||+|+|++....... ....+.|.........+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 44589999999999999999999865411000 00123444444444555
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEe
Q 027618 66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT 145 (221)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~t 145 (221)
.+..+.+|||||+.++. ..+...+..+|++++|+|++++...+...++..+... +. +++++|+|
T Consensus 102 -~~~~~~iiDtpGh~~f~-----------~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~-~~---~~iIvviN 165 (434)
T 1zun_B 102 -AKRKFIIADTPGHEQYT-----------RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLL-GI---KHIVVAIN 165 (434)
T ss_dssp -SSEEEEEEECCCSGGGH-----------HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC---CEEEEEEE
T ss_pred -CCceEEEEECCChHHHH-----------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEE
Confidence 67789999999976421 2222345778999999999988887777777665543 32 36999999
Q ss_pred cCCCCC
Q 027618 146 GGDELE 151 (221)
Q Consensus 146 k~D~~~ 151 (221)
|+|+..
T Consensus 166 K~Dl~~ 171 (434)
T 1zun_B 166 KMDLNG 171 (434)
T ss_dssp CTTTTT
T ss_pred cCcCCc
Confidence 999875
No 145
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.56 E-value=4.9e-14 Score=105.33 Aligned_cols=117 Identities=20% Similarity=0.195 Sum_probs=74.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
..+|+++|++|||||||+++|++........ ...+.......+.+ .+. .+.+|||||...+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~--~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~---------- 71 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESK--STIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRIT---------- 71 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCC----------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhhh----------
Confidence 4789999999999999999999876532221 12222333344445 553 56789999976433211
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
......++++++|+|+.+..+... ..++..+.... ....|+++++||+|+..
T Consensus 72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 72 -SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp -HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGG
T ss_pred -HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECccccc
Confidence 123456799999999885444333 34444444331 12347999999999753
No 146
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.56 E-value=1.8e-14 Score=121.67 Aligned_cols=119 Identities=17% Similarity=0.236 Sum_probs=80.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccc-----------------------------cccCCCCcceeeEEEEEEeeC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMQRTVLKD 67 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~ 67 (221)
.+..+|+++|++++|||||+|+|++..... ......+.|.......+.+ .
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~ 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-H 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-S
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-C
Confidence 345899999999999999999997652100 0011235566666666666 7
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccccE
Q 027618 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYM 140 (221)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~ 140 (221)
+..+.||||||+.++ ...+...+..+|++++|+|++++ ...+....+..+... +. +|+
T Consensus 110 ~~~~~iiDTPG~~~f-----------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~---~~i 174 (483)
T 3p26_A 110 RANFTIVDAPGHRDF-----------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GI---HNL 174 (483)
T ss_dssp SCEEEEECCCCCGGG-----------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TC---CCE
T ss_pred CceEEEEECCCcHHH-----------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CC---CcE
Confidence 789999999998542 23334456778999999999865 334455544444432 32 369
Q ss_pred EEEEecCCCCC
Q 027618 141 IVVFTGGDELE 151 (221)
Q Consensus 141 ivv~tk~D~~~ 151 (221)
++|+||+|+..
T Consensus 175 IvviNK~Dl~~ 185 (483)
T 3p26_A 175 IIAMNKMDNVD 185 (483)
T ss_dssp EEEEECGGGGT
T ss_pred EEEEECcCccc
Confidence 99999999875
No 147
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.56 E-value=4.5e-14 Score=114.96 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=76.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
+.|+++|++|||||||+|+|++...... ...+.|..+....+.+ .+..+.++||||+.... .....+.+...+ .
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~--~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~l--p~~lve~f~~tl-~ 253 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVD--TKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGI--PPQIVDAFFVTL-S 253 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSSC--CGGGHHHHHHHH-H
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCcccc--CCcccccCCEEEEEEE-CCEEEEEEeCCCchhcC--CHHHHHHHHHHH-H
Confidence 4599999999999999999999875322 2234454455556666 67889999999985421 122233333333 3
Q ss_pred hcCCCcEEEEEEeCCCCC--CHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 100 AKDGIHAVLVVFSVRSRF--SQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~--~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.+..+|++++|+|+++.. .... ..+.+.+.+. +.. ..|+++|+||+|+..
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~~-~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREI-GVS-GKPILVTLNKIDKIN 306 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TCC-SCCEEEEEECGGGCC
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-CcC-CCCEEEEEECCCCCC
Confidence 457789999999998543 1111 2233444443 322 247999999999886
No 148
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.56 E-value=3.1e-14 Score=124.86 Aligned_cols=121 Identities=24% Similarity=0.316 Sum_probs=83.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc------------c----cCCCCcceeeEEEEEEeeCCceEEEEeCCCC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS------------R----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~------------~----~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (221)
....++|+++|++|+|||||+|+|++...... + ....+.|.........+ .+..+.+|||||+
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~ 85 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGH 85 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCC
Confidence 34568999999999999999999984221100 0 00124455555556666 7889999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (221)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (221)
.++.. +... ++..+|++++|+|+.+..+..+...+..+.+. ..|+++|+||+|+...+
T Consensus 86 ~df~~-------~~~~----~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~-----~~p~ilviNK~Dl~~~~ 143 (693)
T 2xex_A 86 VDFTV-------EVER----SLRVLDGAVTVLDAQSGVEPQTETVWRQATTY-----GVPRIVFVNKMDKLGAN 143 (693)
T ss_dssp SSCCH-------HHHH----HHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTCC
T ss_pred cchHH-------HHHH----HHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc-----CCCEEEEEECCCccccc
Confidence 87542 1222 33446999999999988888887777766542 23799999999988643
No 149
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.55 E-value=2.5e-14 Score=122.20 Aligned_cols=121 Identities=17% Similarity=0.224 Sum_probs=90.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCccc--------------------ccccCCCCcceeeEEEEEEeeCCceEEEEeC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAF--------------------KSRASSSGVTSTCEMQRTVLKDGQVVNVIDT 76 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~--------------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDt 76 (221)
.+.++|+++|+.++|||||..+|+..... .......++|.........| ++..+.||||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDT 107 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDT 107 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeC
Confidence 45689999999999999999998632211 01122346677777777888 9999999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCh
Q 027618 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND 154 (221)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 154 (221)
||+.||..+.. .+++.+|++++|+|+.++...+....++...+. ..|.++++||+|+...+.
T Consensus 108 PGHvDF~~Ev~-----------raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~-----~lp~i~fINK~Dr~~ad~ 169 (548)
T 3vqt_A 108 PGHQDFSEDTY-----------RVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR-----ATPVMTFVNKMDREALHP 169 (548)
T ss_dssp CCGGGCSHHHH-----------HHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCCEEEEEECTTSCCCCH
T ss_pred CCcHHHHHHHH-----------HHHHhcCceEEEeecCCCcccccHHHHHHHHHh-----CCceEEEEecccchhcch
Confidence 99999874333 455666999999999999999999988888764 237999999999886543
No 150
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.55 E-value=5.1e-14 Score=119.86 Aligned_cols=120 Identities=16% Similarity=0.188 Sum_probs=81.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCccccc----------------c----cCCCCcceeeEEEEEEeeCCceEEEEeC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS----------------R----ASSSGVTSTCEMQRTVLKDGQVVNVIDT 76 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~----------------~----~~~~~~t~~~~~~~~~~~~~~~~~liDt 76 (221)
...++|+++|++|+|||||+++|++...... . ....+.|.........+ .+..+.+|||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDT 89 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDT 89 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEEC
Confidence 3458999999999999999999986421110 0 01223343444445666 7889999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (221)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (221)
||+.++. ..+..++..+|++++|+|+.+.........++.+... ..|+++++||+|+...+
T Consensus 90 PG~~df~-----------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~-----~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 90 PGHEDFS-----------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR-----DTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CCSTTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTT-----TCCEEEEEECTTSCCSC
T ss_pred CCChhHH-----------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHc-----CCCEEEEEcCcCCcccc
Confidence 9998754 1223456778999999999877776665555544321 23799999999987643
No 151
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.55 E-value=3.9e-13 Score=111.29 Aligned_cols=153 Identities=14% Similarity=0.246 Sum_probs=88.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCccccc-ccCCCCcceeeEEEEEEee--------------C--------CceEEE
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTVLK--------------D--------GQVVNV 73 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~l 73 (221)
.+..+|+++|+.++|||||+++|+|...... .....+.|.........+. . ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 4568999999999999999999997643111 1112333443332221110 0 157999
Q ss_pred EeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 74 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 74 iDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
|||||+. .+...+...+..+|++++|+|+++.. ..+..+.+..+.. ++. .|+++++||+|+...
T Consensus 86 iDtPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 86 VDSPGHE-----------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVDE 150 (408)
T ss_dssp EECSSHH-----------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSCT
T ss_pred EECCCHH-----------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCCH
Confidence 9999953 23334445567789999999999776 6666666665543 232 379999999998753
Q ss_pred Ch-----hhHHHHhccc---CCchhhhhHHHHHhHHHHHH
Q 027618 153 ND-----ETLEDYLGRE---CPKPLKKGATKLRDQQFEVD 184 (221)
Q Consensus 153 ~~-----~~~~~~l~~~---~~~~l~~~~~~~~~~~~~~~ 184 (221)
+. ..+.+++... ....+..|+....++.++++
T Consensus 151 ~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~ 190 (408)
T 1s0u_A 151 KQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLK 190 (408)
T ss_dssp TTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHH
Confidence 21 2345555431 12334455555544444333
No 152
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.55 E-value=3.7e-14 Score=122.03 Aligned_cols=116 Identities=17% Similarity=0.232 Sum_probs=80.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee-----------------CCceEEEEeCCCCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGLF 80 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtPG~~ 80 (221)
+.++|+++|++++|||||+++|++...... .+.+.|.........+. ....+.+|||||+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~--e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASR--EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccc--cCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 347899999999999999999997654221 12223322222222110 11258999999998
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
++..... ..+..+|++++|+|+++++.++....+..+... ..|+++++||+|+..
T Consensus 82 ~F~~~~~-----------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~-----~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 82 AFTTLRK-----------RGGALADLAILIVDINEGFKPQTQEALNILRMY-----RTPFVVAANKIDRIH 136 (594)
T ss_dssp CCTTSBC-----------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGST
T ss_pred HHHHHHH-----------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc-----CCeEEEEeccccccc
Confidence 8765443 456778999999999988888888777766542 237999999999864
No 153
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.31 E-value=4e-16 Score=117.12 Aligned_cols=118 Identities=17% Similarity=0.069 Sum_probs=75.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
....+|+++|.+|+|||||++++++.........+ +.......... .....+.+|||||..++. .
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t---~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~ 93 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT---VFDNYSANVMVDGKPVNLGLWDTAGQEDYD-----------R 93 (204)
Confidence 45689999999999999999999876543221111 11111111222 023456699999976432 2
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
.....+..+|++++|+|++++.+... ..++..+....+ ..|+++|+||+|+..
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 148 (204)
Confidence 22235567799999999986554444 256666655432 348999999999875
No 154
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.54 E-value=1.4e-13 Score=112.02 Aligned_cols=127 Identities=20% Similarity=0.280 Sum_probs=66.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCC-----CCcceeeEEEEEEee-CC--ceEEEEeCCCCCCCCCC-----
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASS-----SGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAG----- 85 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~-----~~~t~~~~~~~~~~~-~~--~~~~liDtPG~~~~~~~----- 85 (221)
.++|+++|++|+|||||+|+|++...+..+... ...|........... .+ ..+.+|||||+.+....
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 478999999999999999999887655433211 012222222222110 22 26899999999654321
Q ss_pred --chHHHHHHHHHHHhhc---------CCCcEEEEEEeC-CCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 86 --SEFVGKEIVKCIGMAK---------DGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 86 --~~~~~~~~~~~~~~~~---------~~~~~il~v~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
...+...+..++.... ..+|+++|+++. ...+...+..+++.+ .. ..|+++|+||+|...
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~--~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HN--KVNIVPVIAKADTLT 188 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS---SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----cc--CCCEEEEEECCCCCC
Confidence 1222222223333221 234788888876 457777776555544 22 348999999999886
No 155
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.54 E-value=1.1e-13 Score=104.11 Aligned_cols=126 Identities=14% Similarity=0.194 Sum_probs=72.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCc--hHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS--EFVGKEIV 94 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~~ 94 (221)
.++.+|+++|++|||||||+|+|+|...........+.+.... ...+ .+ .+.++||||+....... ........
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEV-AD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEE-ET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEe-cC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 4568999999999999999999998762111111223333222 2223 22 67799999986422111 11122222
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+......++++++|+++....+..+....+++... ..|++++.||+|.+.
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS-----NIAVLVLLTKADKLA 151 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHc-----CCCeEEEEecccCCC
Confidence 2222233567999999999877776555554444321 236888999999886
No 156
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.54 E-value=8.7e-14 Score=116.14 Aligned_cols=121 Identities=20% Similarity=0.250 Sum_probs=82.9
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc-----------------------------cCCCCcceeeEEEEEEe
Q 027618 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMQRTVL 65 (221)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~ 65 (221)
+.....+|+++|++++|||||+|+|++....... ....+.|.......+.+
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 3456689999999999999999999665321100 11235666666666666
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCC-------HHHHHHHHHHHHHhcccccc
Q 027618 66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS-------QEEEAALHSLQTLFGKKIFD 138 (221)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~ 138 (221)
.+..+.+|||||+.++ ...+...+..+|++++|+|+++... .+..+.+..+... +. +
T Consensus 93 -~~~~~~iiDTPGh~~f-----------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~-~v---~ 156 (439)
T 3j2k_7 93 -EKKHFTILDAPGHKSF-----------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GV---K 156 (439)
T ss_pred -CCeEEEEEECCChHHH-----------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc-CC---C
Confidence 7789999999997532 2333344567799999999986653 3455555544432 32 2
Q ss_pred cEEEEEecCCCCC
Q 027618 139 YMIVVFTGGDELE 151 (221)
Q Consensus 139 ~~ivv~tk~D~~~ 151 (221)
++++++||+|+..
T Consensus 157 ~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 157 HLIVLINKMDDPT 169 (439)
T ss_pred eEEEEeecCCCcc
Confidence 4899999999853
No 157
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.54 E-value=1.1e-15 Score=129.59 Aligned_cols=116 Identities=16% Similarity=0.250 Sum_probs=87.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
+.++|+++|++++|||||+++|++...... ...+.|.........++.+..+.||||||+.++.....
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~---------- 70 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA---------- 70 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH----------
Confidence 347899999999999999999998765333 33445555555555443566899999999887665443
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+..+|++++|+++++...++....+..+... ..|+++++||+|+..
T Consensus 71 -~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~-----~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 71 -RGTQVTDIVILVVAADDGVMKQTVESIQHAKDA-----HVPIVLAINKCDKAE 118 (537)
T ss_dssp -SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT-----TCCEEECCBSGGGTT
T ss_pred -HHHccCCEEEEEEECCCCccHHHHHHHHHHHHc-----CCcEEEEEecccccc
Confidence 456778999999999988888887777666543 237999999999864
No 158
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.54 E-value=2.2e-14 Score=105.87 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=66.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEe----eCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL----KDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (221)
..+|+++|++|||||||+|++++......+................. .....+.+|||||...+..
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------- 71 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS---------- 71 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHT----------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHH----------
Confidence 36899999999999999999998632111111111111111111111 1345788999999643211
Q ss_pred HHHHhhcCCCcEEEEEEeCCCCCCHH--HHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 95 KCIGMAKDGIHAVLVVFSVRSRFSQE--EEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....++..++++++|+|++++.+.. ...|+..+.... ...|+++|+||+|+..
T Consensus 72 -~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 126 (184)
T 2zej_A 72 -THPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSD 126 (184)
T ss_dssp -TSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCC
T ss_pred -hhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCccc
Confidence 1122334568999999998543211 245555554432 1348999999999875
No 159
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.54 E-value=4.8e-14 Score=123.65 Aligned_cols=123 Identities=20% Similarity=0.239 Sum_probs=82.8
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccc---c---------c----cCCCCcceeeEEEEEEeeCCceEEEEeCC
Q 027618 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFK---S---------R----ASSSGVTSTCEMQRTVLKDGQVVNVIDTP 77 (221)
Q Consensus 14 ~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~---~---------~----~~~~~~t~~~~~~~~~~~~~~~~~liDtP 77 (221)
.+....++|+++|++|+|||||+++|+...... . . ....+.|.........+ .+..+.+||||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTP 85 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTP 85 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCC
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECc
Confidence 344556899999999999999999998321100 0 0 00224555555566667 78899999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618 78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (221)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (221)
|+.++. .+.. .++..+|++++|+|+.+....+....+..+.+. ..|+++++||+|+...+
T Consensus 86 G~~df~-------~~~~----~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 86 GHVDFT-------IEVE----RSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY-----KVPRIAFANKMDKTGAD 145 (691)
T ss_dssp SSTTCH-------HHHH----HHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTCC
T ss_pred CccchH-------HHHH----HHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc-----CCCEEEEEECCCcccCC
Confidence 987642 2222 333456999999999988888887776665542 23799999999988644
No 160
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.53 E-value=5.2e-15 Score=124.60 Aligned_cols=115 Identities=16% Similarity=0.227 Sum_probs=84.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
+.++|+++|+.++|||||+++|++...... ...+.|.....+.+.+ .+..+.+|||||+.++.....
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~--e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~~~---------- 69 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASG--EAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSMRA---------- 69 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBT--TBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTSBC----------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccc--cCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHHHH----------
Confidence 457899999999999999999987554222 1234444444444555 667899999999988764432
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+..+|++++|++++++..++....+..+... ..|+++++||+|+..
T Consensus 70 -~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~-----~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 70 -RGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA-----QVPVVVAVNKIDKPE 117 (501)
T ss_dssp -SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT-----TCCEEEEEECSSSST
T ss_pred -HHHhhCCEEEEEeecccCccHHHHHHHHHHHhc-----CceEEEEEEeccccc
Confidence 456778999999999877777776666655442 237999999999865
No 161
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.53 E-value=1.5e-13 Score=115.97 Aligned_cols=117 Identities=18% Similarity=0.265 Sum_probs=80.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCc----ccc-cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRR----AFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE 92 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~----~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~ 92 (221)
+..+|+++|+.++|||||+|+|++.. ... ......+.|.........+ .+..+.+|||||+. .
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~-----------~ 85 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHA-----------D 85 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHH-----------H
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChH-----------H
Confidence 35799999999999999999999876 110 1112334566555555666 77899999999963 2
Q ss_pred HHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+...+...+..+|++++|+|+++....+..+.+..+... + .|.++++||+|+..
T Consensus 86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~-~----ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF-N----IPIIVVITKSDNAG 139 (482)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT-T----CCBCEEEECTTSSC
T ss_pred HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc-C----CCEEEEEECCCccc
Confidence 334444566788999999999988888887777766542 3 25799999999875
No 162
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.53 E-value=1.5e-13 Score=120.35 Aligned_cols=130 Identities=15% Similarity=0.160 Sum_probs=83.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCC---------------------------------------------
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS--------------------------------------------- 52 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~--------------------------------------------- 52 (221)
..++|+++|.+++|||||+|+|+|....+.+....
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 45799999999999999999999987643332111
Q ss_pred ----CcceeeEEEEEEeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHHhhc-CCCcEEEEEEeCCCCCCHHHH-HH
Q 027618 53 ----GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAK-DGIHAVLVVFSVRSRFSQEEE-AA 124 (221)
Q Consensus 53 ----~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~il~v~~~~~~~~~~~~-~~ 124 (221)
+.+.......+..+....++|+||||+..... ...+....+...+..++ ..+|++++|+|++......+. .+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 01111122233344556799999999987321 12222233333333222 577999999999877777665 45
Q ss_pred HHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 125 LHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 125 ~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
++.+... ..|+++|+||+|+...
T Consensus 210 l~~L~~~-----g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 210 AKEVDPQ-----GQRTIGVITKLDLMDE 232 (772)
T ss_dssp HHHHCTT-----CSSEEEEEECTTSSCT
T ss_pred HHHHHhc-----CCCEEEEEeCcccCCc
Confidence 5444432 3479999999999863
No 163
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.52 E-value=1.5e-13 Score=111.66 Aligned_cols=130 Identities=16% Similarity=0.140 Sum_probs=74.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCC---CCc-----------------------c----------------
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASS---SGV-----------------------T---------------- 55 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~---~~~-----------------------t---------------- 55 (221)
..++|+++|.+|+|||||+|+|+|....+..... .+. +
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3479999999999999999999998763222111 000 0
Q ss_pred -------eeeEEEEEEeeCCceEEEEeCCCCCCCCCC--chHHHHHHHHHHHhhcCC-CcEEEEEEeCCCCCCHHHHHHH
Q 027618 56 -------STCEMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAKDG-IHAVLVVFSVRSRFSQEEEAAL 125 (221)
Q Consensus 56 -------~~~~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~il~v~~~~~~~~~~~~~~~ 125 (221)
.......+..+....+.||||||+...... ..+..+.+...+..++.. .+++++|++++..+...+. .
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--~ 187 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--L 187 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--H
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--H
Confidence 000001112223567999999999753211 222223344444434333 4566777777755555442 2
Q ss_pred HHHHHHhcccccccEEEEEecCCCCC
Q 027618 126 HSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 126 ~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+.+..... ...|+++|+||+|+..
T Consensus 188 ~i~~~~~~--~~~~~i~V~NK~Dl~~ 211 (353)
T 2x2e_A 188 KVAKEVDP--QGQRTIGVITKLDLMD 211 (353)
T ss_dssp HHHHHHCT--TCTTEEEEEECGGGSC
T ss_pred HHHHHhCc--CCCceEEEeccccccC
Confidence 33333322 2347999999999885
No 164
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.52 E-value=2.8e-14 Score=118.02 Aligned_cols=120 Identities=15% Similarity=0.221 Sum_probs=82.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcc-------c-cc---c----cCCCCcceeeEEEEEEeeCCceEEEEeCCCCC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRA-------F-KS---R----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~-------~-~~---~----~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~ 80 (221)
.....+|+++|++++|||||+++|++... + .. . ....+.|.......+.+ .+..+.+|||||+.
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHA 86 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChH
Confidence 34568999999999999999999987310 0 00 0 00123444444444444 67889999999987
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
++ ...+...+..+|++++|+|+++....+...++..+... +. +++++++||+|+..
T Consensus 87 ~f-----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-~i---p~iivviNK~Dl~~ 142 (405)
T 2c78_A 87 DY-----------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV---PYIVVFMNKVDMVD 142 (405)
T ss_dssp GG-----------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TC---CCEEEEEECGGGCC
T ss_pred HH-----------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CEEEEEEECccccC
Confidence 53 12333455678999999999888888877777766543 22 23889999999874
No 165
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.52 E-value=9.1e-14 Score=120.20 Aligned_cols=120 Identities=15% Similarity=0.227 Sum_probs=82.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc-----------------------------cCCCCcceeeEEEEEEee
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMQRTVLK 66 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~ 66 (221)
..+..+|+++|++++|||||+|+|++....... ....+.|.......+.+
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~- 242 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST- 242 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-
Confidence 345689999999999999999999976421110 00135566666666666
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC-------CCHHHHHHHHHHHHHhccccccc
Q 027618 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDY 139 (221)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~ 139 (221)
.+..+.||||||+.+ +...+...+..+|++|+|+|++++ ...+....+..+.. .+ .++
T Consensus 243 ~~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lg---i~~ 307 (611)
T 3izq_1 243 HRANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG---IHN 307 (611)
T ss_dssp SSCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TT---CCE
T ss_pred CCceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cC---CCe
Confidence 778999999999864 234445667889999999999843 23344444443332 23 236
Q ss_pred EEEEEecCCCCC
Q 027618 140 MIVVFTGGDELE 151 (221)
Q Consensus 140 ~ivv~tk~D~~~ 151 (221)
+++|+||+|+..
T Consensus 308 iIVVvNKiDl~~ 319 (611)
T 3izq_1 308 LIIAMNKMDNVD 319 (611)
T ss_dssp EEEEEECTTTTT
T ss_pred EEEEEecccccc
Confidence 999999999875
No 166
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.52 E-value=2.6e-13 Score=112.41 Aligned_cols=120 Identities=16% Similarity=0.269 Sum_probs=79.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCccccc-ccCCCCcceeeEEEEEEeeC----------------------CceEEE
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTVLKD----------------------GQVVNV 73 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~----------------------~~~~~l 73 (221)
.+..+|+++|+.++|||||+++|+|...... .....+.|.........+.. ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 3458999999999999999999997643111 11123344443332222200 157899
Q ss_pred EeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 74 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 74 iDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
|||||+.+ +...+...+..+|++++|+|+++.. ..+..+.+..+... +. +|+++++||+|+..
T Consensus 88 iDtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~---~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 88 IDAPGHEA-----------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVD 151 (410)
T ss_dssp EECSSHHH-----------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSC
T ss_pred EECCChHH-----------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CC---CcEEEEEECccCCC
Confidence 99999532 2233334456779999999999776 66776666655543 33 37999999999876
No 167
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.51 E-value=8.8e-14 Score=114.98 Aligned_cols=119 Identities=16% Similarity=0.190 Sum_probs=76.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc-------------cCCCCcceee-----EEEEEEeeCCceEEEEeCCC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTC-----EMQRTVLKDGQVVNVIDTPG 78 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-------------~~~~~~t~~~-----~~~~~~~~~~~~~~liDtPG 78 (221)
.+..+|+++|++|+|||||+|+|++....... ......+... ....... ....+.++||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiDtPG 84 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK-FLRRISFIDAPG 84 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE-EEEEEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceeccccccccccccccc-ccceEEEEECCC
Confidence 45589999999999999999999985321100 0000000000 0000000 226789999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..++ ...+...+..+|++++|+|+++.. ..+...++..+... +. .|+++++||+|+..
T Consensus 85 h~~~-----------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~~ 143 (403)
T 3sjy_A 85 HEVL-----------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVVS 143 (403)
T ss_dssp CGGG-----------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSC
T ss_pred cHHH-----------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECccccc
Confidence 6432 233334556789999999999776 66667777666543 33 37999999999886
No 168
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.51 E-value=1.1e-13 Score=111.08 Aligned_cols=116 Identities=19% Similarity=0.078 Sum_probs=77.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK 95 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (221)
...+|+++|.+|+|||||++++++....... .+.+.......... .+. .+.+|||||...+...
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~---------- 219 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEY---IPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRL---------- 219 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSC---CCCSEEEEEEEEEE-TTEEEEEEEEEECCCGGGTTT----------
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCccc---CCcccceeEEEEEE-CCEEEEEEEEeCCCchhhhHH----------
Confidence 3489999999999999999999976542221 12222222223333 444 4559999998654322
Q ss_pred HHHhhcCCCcEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 96 CIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....+..+|++++|+|++++.+..+. .++..+....+ ..|+++|+||+|+..
T Consensus 220 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 220 -RPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 273 (332)
T ss_dssp -GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHT
T ss_pred -HHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhccc
Confidence 22467788999999999865544442 46666665432 348999999999864
No 169
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.50 E-value=7.4e-14 Score=122.52 Aligned_cols=121 Identities=18% Similarity=0.199 Sum_probs=76.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCc-------------ceee--------------------------
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGV-------------TSTC-------------------------- 58 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~-------------t~~~-------------------------- 58 (221)
...+|+++|.+|+|||||+|+|+|....+.+..+... +...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 4589999999999999999999998865443222110 0000
Q ss_pred -------------EEEEEEeeCC---ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHH
Q 027618 59 -------------EMQRTVLKDG---QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE 122 (221)
Q Consensus 59 -------------~~~~~~~~~~---~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~ 122 (221)
....+.++.. ..+.+|||||+.+... ....+...++.+|++++|++++...+..+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~ 219 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGER 219 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhHH
Confidence 0000111000 4689999999875211 112333445667999999999878887776
Q ss_pred HHHH-HHHHHhcccccccEEEEEecCCCCC
Q 027618 123 AALH-SLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 123 ~~~~-~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+. .+.+ ...|+++|+||+|...
T Consensus 220 ~~l~~~l~~-----~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 220 RYLENYIKG-----RGLTVFFLVNAWDQVR 244 (695)
T ss_dssp HHHHHHTTT-----SCCCEEEEEECGGGGG
T ss_pred HHHHHHHHh-----hCCCEEEEEECccccc
Confidence 5443 2221 1236999999999864
No 170
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.50 E-value=2.4e-13 Score=112.18 Aligned_cols=118 Identities=16% Similarity=0.188 Sum_probs=81.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc--------------ccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (221)
+..+|+++|+.++|||||+++|++...... .....+.|.......+.+ .+..+.+|||||+.+
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~-- 78 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD-- 78 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH--
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHH--
Confidence 347899999999999999999987421000 001234455444444444 568899999999642
Q ss_pred CCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+...+...+..+|++++|+|+++....+....+..+... +. +++++++||+|+..
T Consensus 79 ---------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~-~v---p~iivviNK~Dl~~ 133 (397)
T 1d2e_A 79 ---------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI-GV---EHVVVYVNKADAVQ 133 (397)
T ss_dssp ---------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC---CCEEEEEECGGGCS
T ss_pred ---------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc-CC---CeEEEEEECcccCC
Confidence 233444567889999999999988888777777655542 22 23789999999874
No 171
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.50 E-value=3.7e-13 Score=118.21 Aligned_cols=121 Identities=20% Similarity=0.276 Sum_probs=83.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc------------c----cCCCCcceeeEEEEEEeeCC-------ceEE
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS------------R----ASSSGVTSTCEMQRTVLKDG-------QVVN 72 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~------------~----~~~~~~t~~~~~~~~~~~~~-------~~~~ 72 (221)
....++|+++|+.|+|||||+++|+....... + ....+.|.........| .+ ..+.
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRIN 85 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEE
Confidence 45568999999999999999999975321000 0 00234455555555656 54 7899
Q ss_pred EEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 027618 73 VIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (221)
Q Consensus 73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (221)
||||||..++. .+ +..++..+|++++|+|+.+....+....+..+... ..|+++++||+|+...
T Consensus 86 liDTPG~~df~-------~~----~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-----~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 86 IIDTPGHVDFT-------IE----VERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY-----KVPRIAFVNKMDRMGA 149 (704)
T ss_pred EEeCCCccchH-------HH----HHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCEEEEEeCCCcccc
Confidence 99999987643 12 22344566999999999978777776666555432 2378999999998764
Q ss_pred C
Q 027618 153 N 153 (221)
Q Consensus 153 ~ 153 (221)
+
T Consensus 150 ~ 150 (704)
T 2rdo_7 150 N 150 (704)
T ss_pred c
Confidence 3
No 172
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.50 E-value=7.9e-14 Score=119.80 Aligned_cols=120 Identities=22% Similarity=0.264 Sum_probs=75.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc-------------cCCCCcceeeEEEEEEee--C--CceEEEEeCCCCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLK--D--GQVVNVIDTPGLF 80 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~--~--~~~~~liDtPG~~ 80 (221)
..++|+++|+.++|||||+++|++....... ....+.|.........|. . ...+.+|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 4589999999999999999999763211000 011234444444444442 1 2578899999987
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (221)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (221)
++. .++. .++..+|++++|+|+.++...+....+....+. ..|+++++||+|+...+
T Consensus 85 dF~-------~ev~----r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~-----~ipiIvviNKiDl~~a~ 141 (600)
T 2ywe_A 85 DFS-------YEVS----RALAACEGALLLIDASQGIEAQTVANFWKAVEQ-----DLVIIPVINKIDLPSAD 141 (600)
T ss_dssp GGH-------HHHH----HHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT-----TCEEEEEEECTTSTTCC
T ss_pred hHH-------HHHH----HHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC-----CCCEEEEEeccCccccC
Confidence 642 2222 334566999999999988888776655554432 23799999999987643
No 173
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.49 E-value=8.3e-14 Score=119.15 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=74.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE----EEEee---CCceEEEEeCCCCCCCCCCchHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ----RTVLK---DGQVVNVIDTPGLFDFSAGSEFV 89 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~----~~~~~---~~~~~~liDtPG~~~~~~~~~~~ 89 (221)
....+|+++|.+|||||||+|++++.........+.+.+...... .+... .+..+.++||||...+.....
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~-- 116 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ-- 116 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH--
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH--
Confidence 455899999999999999999999876532211111111111100 11110 256899999999765543322
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 90 GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 90 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+..+|++++|+|+++ . .....|+..+.+..+ ..|+++|+||+|...
T Consensus 117 ---------~~l~~~d~ii~V~D~s~-~-~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 117 ---------FFMTRSSVYMLLLDSRT-D-SNKHYWLRHIEKYGG---KSPVIVVMNKIDENP 164 (535)
T ss_dssp ---------HHHHSSEEEEEEECGGG-G-GGHHHHHHHHHHHSS---SCCEEEEECCTTTCT
T ss_pred ---------HHccCCcEEEEEEeCCC-c-hhHHHHHHHHHHhCC---CCCEEEEEECCCccc
Confidence 23445799999999873 2 344677777777532 248999999999875
No 174
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.49 E-value=1.1e-13 Score=115.37 Aligned_cols=119 Identities=24% Similarity=0.316 Sum_probs=74.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCc--cccc---------------------------ccCCCCcceeeEEEEEEeeC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRR--AFKS---------------------------RASSSGVTSTCEMQRTVLKD 67 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~--~~~~---------------------------~~~~~~~t~~~~~~~~~~~~ 67 (221)
.+.++|+++|+.++|||||+++|++.. .... .....+.|.........+ .
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~ 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-K 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-S
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-C
Confidence 345899999999999999999998642 1000 001234555555555666 7
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccccE
Q 027618 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYM 140 (221)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~ 140 (221)
+..+.+|||||+.++ ...+...+..+|++++|+|+++. ...+..+.+..+... + .+++
T Consensus 83 ~~~~~iiDtpG~~~f-----------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~-~---~~~i 147 (435)
T 1jny_A 83 KYFFTIIDAPGHRDF-----------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-G---LDQL 147 (435)
T ss_dssp SCEEEECCCSSSTTH-----------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-T---CTTC
T ss_pred CeEEEEEECCCcHHH-----------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHc-C---CCeE
Confidence 788999999998752 12344567889999999999864 222333333333322 2 2368
Q ss_pred EEEEecCCCCC
Q 027618 141 IVVFTGGDELE 151 (221)
Q Consensus 141 ivv~tk~D~~~ 151 (221)
++++||+|+..
T Consensus 148 ivviNK~Dl~~ 158 (435)
T 1jny_A 148 IVAVNKMDLTE 158 (435)
T ss_dssp EEEEECGGGSS
T ss_pred EEEEEcccCCC
Confidence 99999999875
No 175
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.48 E-value=8.4e-14 Score=119.78 Aligned_cols=120 Identities=20% Similarity=0.202 Sum_probs=72.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc-------------cCCCCcceeeEEEEEEeeC----CceEEEEeCCCCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLKD----GQVVNVIDTPGLF 80 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~~----~~~~~liDtPG~~ 80 (221)
..++|+++|+.++|||||+++|+........ ....+.|.........|.. ...+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 3589999999999999999999863211000 0123455555555555521 3578899999987
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (221)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (221)
++. .++... +..+|++++|+|+.++...+....+...... ..|+++++||+|+...+
T Consensus 83 dF~-------~ev~~~----l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~-----~ipiIvViNKiDl~~a~ 139 (599)
T 3cb4_D 83 DFS-------YEVSRS----LAACEGALLVVDAGQGVEAQTLANCYTAMEM-----DLEVVPVLNKIDLPAAD 139 (599)
T ss_dssp GGH-------HHHHHH----HHHCSEEEEEEETTTCCCTHHHHHHHHHHHT-----TCEEEEEEECTTSTTCC
T ss_pred HHH-------HHHHHH----HHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-----CCCEEEeeeccCccccc
Confidence 642 223333 3445999999999988887776655544432 23799999999987643
No 176
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.48 E-value=5e-13 Score=99.26 Aligned_cols=117 Identities=21% Similarity=0.225 Sum_probs=74.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCce--EEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV--VNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
..+|+++|++|||||||++++++...+... ....+.......+.+ .+.. +.++||||...+.....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~--------- 96 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITS--------- 96 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCCH---------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhhH---------
Confidence 479999999999999999999987654322 122233333444545 5543 45699999875433221
Q ss_pred HHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+..++++++|+|..+..+... ..++..+.+.. ....|+++++||+|+..
T Consensus 97 --~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 97 --AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp --HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGG
T ss_pred --HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccccc
Confidence 23456689999999874433222 23444444321 12347999999999753
No 177
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.47 E-value=8.6e-14 Score=116.74 Aligned_cols=118 Identities=19% Similarity=0.245 Sum_probs=77.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcc-ccc------------------------c----cCCCCcceeeEEEEEEeeCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRA-FKS------------------------R----ASSSGVTSTCEMQRTVLKDG 68 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~-~~~------------------------~----~~~~~~t~~~~~~~~~~~~~ 68 (221)
+..+|+++|++++|||||+|+|++... ... . ....+.|.......+.+ .+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~ 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CC
Confidence 458999999999999999999986420 000 0 00134555555455555 67
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCH-------HHHHHHHHHHHHhcccccccEE
Q 027618 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQ-------EEEAALHSLQTLFGKKIFDYMI 141 (221)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~i 141 (221)
..+.+|||||+.+ +...+...+..+|++++|+|+++...+ +....+..+.. .+ .++++
T Consensus 85 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~---v~~ii 149 (458)
T 1f60_A 85 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LG---VRQLI 149 (458)
T ss_dssp EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TT---CCEEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cC---CCeEE
Confidence 7899999999753 223344567889999999999854322 33333333332 22 23589
Q ss_pred EEEecCCCCC
Q 027618 142 VVFTGGDELE 151 (221)
Q Consensus 142 vv~tk~D~~~ 151 (221)
+++||+|+..
T Consensus 150 vviNK~Dl~~ 159 (458)
T 1f60_A 150 VAVNKMDSVK 159 (458)
T ss_dssp EEEECGGGGT
T ss_pred EEEEcccccc
Confidence 9999999873
No 178
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.47 E-value=3.3e-13 Score=107.49 Aligned_cols=120 Identities=14% Similarity=0.101 Sum_probs=74.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
+|+++|.+|+||||+++.+.+...+.. ....++|.......+ .....+.+|||||..++.... + .....
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~-~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~--l------~~~~y 69 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLD-TLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPS--Y------DSERL 69 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGG-GTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCS--H------HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCc-cceecCeeeeeeEEE--ccEEEEEEEECCCchhccchh--h------hhhhh
Confidence 489999999999999998876543221 111223333332222 144789999999998763210 0 11245
Q ss_pred cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+++++++++|+|+++++......+.+++.+........|+++++||+|+..
T Consensus 70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~ 120 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120 (331)
T ss_dssp HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSC
T ss_pred ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCc
Confidence 688899999999987733322333333333211112348999999999876
No 179
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.46 E-value=2.5e-13 Score=110.89 Aligned_cols=102 Identities=16% Similarity=0.222 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (221)
+|+++|++++|||||+++|+ ..+.|.........+ .+..+.+|||||+.++. .. +...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f~-------~~----~~~~ 80 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKTL-------KS----LITA 80 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECS-SSSEEEEEECTTTTTCH-------HH----HHHH
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEec-CCeEEEEEECCChHHHH-------HH----HHHH
Confidence 89999999999999999998 112344444445555 67789999999987642 22 2233
Q ss_pred cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEe-cCCC
Q 027618 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT-GGDE 149 (221)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~t-k~D~ 149 (221)
+..+|++++|+| ++....+..+++..+... +.+ .+++++| |+|+
T Consensus 81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~-~i~---~~ivvvNNK~Dl 125 (370)
T 2elf_A 81 LNISDIAVLCIP-PQGLDAHTGECIIALDLL-GFK---HGIIALTRSDST 125 (370)
T ss_dssp HHTCSEEEEEEC-TTCCCHHHHHHHHHHHHT-TCC---EEEEEECCGGGS
T ss_pred HHHCCEEEEEEc-CCCCcHHHHHHHHHHHHc-CCC---eEEEEEEeccCC
Confidence 466799999999 767777777777666543 322 3488999 9998
No 180
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.43 E-value=2.2e-14 Score=123.67 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=62.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccc-----------------------------cCCCCcceeeEEEEEEee
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMQRTVLK 66 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~ 66 (221)
....++|+++|++++|||||+|+|++....... ....++|.......+.+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~- 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES- 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence 445678999999999999999999753211000 01234566665555665
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC-------CHHHHHHHHHHHHHhccccccc
Q 027618 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-------SQEEEAALHSLQTLFGKKIFDY 139 (221)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~ 139 (221)
.+..+.||||||+.++.... ...+..+|++|+|+|++++. ..+....+..+... +. ++
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~-----------~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l-gi---p~ 317 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGM-----------IAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL-GI---SE 317 (592)
T ss_dssp ------CCEEESSSEEEEEC-----------CC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS-SC---CC
T ss_pred CCeEEEEEECCChHHHHHHH-----------HHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc-CC---Ce
Confidence 66789999999987643221 13446679999999998542 55566665555542 32 25
Q ss_pred EEEEEecCCCCC
Q 027618 140 MIVVFTGGDELE 151 (221)
Q Consensus 140 ~ivv~tk~D~~~ 151 (221)
+++|+||+|+..
T Consensus 318 iIvviNKiDl~~ 329 (592)
T 3mca_A 318 IVVSVNKLDLMS 329 (592)
T ss_dssp EEEEEECGGGGT
T ss_pred EEEEEecccccc
Confidence 899999999865
No 181
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.43 E-value=1.8e-12 Score=107.04 Aligned_cols=125 Identities=16% Similarity=0.121 Sum_probs=76.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (221)
..|+|+|++|||||||+|+|++....... ....|..+....+.+.....++++||||+.+.......+...+. .
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~--~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl----~ 231 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAP--YPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFL----R 231 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECC--CTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHH----H
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccC--cccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHH----H
Confidence 45899999999999999999988542222 22334445555565522378999999998653111111111221 2
Q ss_pred hcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
....++.+++|++++ +-...+ ..+.+.+..+...-...|.++|+||+|...
T Consensus 232 ~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 232 HIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp HHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred HHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 235679999999997 222222 333344443311112458899999999876
No 182
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.42 E-value=2.9e-12 Score=105.86 Aligned_cols=128 Identities=17% Similarity=0.210 Sum_probs=69.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCC----CCcceeeEEEEEEe---eCCceEEEEeCCCCCCCCCCchHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGSEFV 89 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~----~~~t~~~~~~~~~~---~~~~~~~liDtPG~~~~~~~~~~~ 89 (221)
+-.+.|+++|++|+|||||+|+|+|...+..+... ...+.......+.. .....++++||||+...... ...
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~-~~~ 107 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN-SNC 107 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC------------
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc-hhh
Confidence 33478999999999999999999998764332110 01121111111111 01236889999999764211 111
Q ss_pred HHHHH----HHHHh-----------hc--CCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 90 GKEIV----KCIGM-----------AK--DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 90 ~~~~~----~~~~~-----------~~--~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+..+. ..+.. .+ +.+|+++|++... ..+.+.+..+++.+.. ..++++|+||+|...
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~------~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT 181 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT------TSEEEEEEESTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc------cCcEEEEEEcccCcc
Confidence 11221 11111 11 3456788888775 5788888766665542 247999999999886
No 183
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.42 E-value=1.1e-12 Score=107.93 Aligned_cols=91 Identities=14% Similarity=0.031 Sum_probs=46.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee--------------------C---CceEEEEeC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--------------------D---GQVVNVIDT 76 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~---~~~~~liDt 76 (221)
.+|+++|.+|+|||||+|+|++...... ...++|..+......+. . ...+.+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~--~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIA--NYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 3789999999999999999999863211 12223333333321110 1 246899999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCC
Q 027618 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR 116 (221)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~ 116 (221)
||+....... +.+...+...++.+|++++|+|+.+.
T Consensus 79 pG~~~~a~~~----~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAHEG----RGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C-------------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchhhh----hhHHHHHHHHHhcCCEEEEEEecccc
Confidence 9997532211 11222222456888999999999754
No 184
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.40 E-value=2.6e-13 Score=114.11 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=67.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccc-------------------------cc----cCCCCcceeeEEEEEEeeC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK-------------------------SR----ASSSGVTSTCEMQRTVLKD 67 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~-------------------------~~----~~~~~~t~~~~~~~~~~~~ 67 (221)
.+..+|+++|+.++|||||+++|++..... .+ ....+.|.......+.+ .
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~ 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-E 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-S
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-C
Confidence 445799999999999999999997422100 00 01234555555455555 6
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCC-------HHHHHHHHHHHHHhcccccccE
Q 027618 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS-------QEEEAALHSLQTLFGKKIFDYM 140 (221)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~ 140 (221)
+..+.+|||||+.++. ..+...+..+|++++|+|++++.. .+....+..+.. .+. +++
T Consensus 120 ~~~~~iiDtPGh~~f~-----------~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~v---p~i 184 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYV-----------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI---NHL 184 (467)
T ss_dssp SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC---SSE
T ss_pred CeEEEEEECCCcHHHH-----------HHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCC---CEE
Confidence 7889999999987543 222345678899999999986531 233333333332 222 248
Q ss_pred EEEEecCCCCC
Q 027618 141 IVVFTGGDELE 151 (221)
Q Consensus 141 ivv~tk~D~~~ 151 (221)
++++||+|+..
T Consensus 185 ivviNK~Dl~~ 195 (467)
T 1r5b_A 185 VVVINKMDEPS 195 (467)
T ss_dssp EEEEECTTSTT
T ss_pred EEEEECccCCC
Confidence 99999999854
No 185
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.40 E-value=1.9e-12 Score=113.11 Aligned_cols=117 Identities=29% Similarity=0.297 Sum_probs=83.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccC----------------CCCcceeeEEEEEEeeCCceEEEEeCCCCC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS----------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~ 80 (221)
....+|+++|++|+|||||+++|++......... ..+.+.........+ ....+.+|||||..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYG 85 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCcc
Confidence 4458999999999999999999985432100000 123455555556666 78899999999987
Q ss_pred CCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (221)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (221)
++. ..... ++..+|++++|+|+.+........++..+... ..|+++++||+|+.
T Consensus 86 ~f~-------~~~~~----~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~-----~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFV-------GEIRG----ALEAADAALVAVSAEAGVQVGTERAWTVAERL-----GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGH-------HHHHH----HHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred chH-------HHHHH----HHhhcCcEEEEEcCCcccchhHHHHHHHHHHc-----cCCEEEEecCCchh
Confidence 531 22333 33445999999999888888888777777653 23789999999987
No 186
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.39 E-value=1.6e-13 Score=119.39 Aligned_cols=118 Identities=19% Similarity=0.270 Sum_probs=89.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccc----------------cCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (221)
.++|+++|+.++|||||..+|+........ ....+.|.........| ++..+.||||||+.||
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH
Confidence 478999999999999999998633221110 00125666666667778 8899999999999987
Q ss_pred CCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (221)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (221)
... +..+++.+|+.++|+|+.++...+....++...+. + .|.++++||+|+...+
T Consensus 81 ~~E-----------v~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~-~----lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 81 LAE-----------VYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM-G----IPTIFFINKIDQNGID 135 (638)
T ss_dssp HHH-----------HHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH-T----CSCEECCEECCSSSCC
T ss_pred HHH-----------HHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc-C----CCeEEEEeccccccCC
Confidence 532 22456677999999999999999999888888775 3 2678999999987654
No 187
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.39 E-value=8.5e-13 Score=118.02 Aligned_cols=118 Identities=22% Similarity=0.267 Sum_probs=79.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc--------------cCCCCcceeeEEEEEEee---------------C
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLK---------------D 67 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------------~ 67 (221)
...++|+++|+.|+|||||+++|++....... ....+.|.........|. .
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 34589999999999999999999865321110 011233433333344442 1
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (221)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~ 147 (221)
+..+.+|||||+.++.. .+..+++.+|++++|+|+.++.+.++...+..+... ..|+++++||+
T Consensus 97 ~~~i~liDTPG~~df~~-----------~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~-----~~p~ilviNK~ 160 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSS-----------EVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE-----RIKPVVVINKV 160 (842)
T ss_dssp EEEEEEECCCCCCSSCH-----------HHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCEEEEEEECH
T ss_pred CceEEEEECcCchhhHH-----------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCeEEEEECC
Confidence 56789999999988652 122344567999999999988888886665554331 23789999999
Q ss_pred CCC
Q 027618 148 DEL 150 (221)
Q Consensus 148 D~~ 150 (221)
|+.
T Consensus 161 D~~ 163 (842)
T 1n0u_A 161 DRA 163 (842)
T ss_dssp HHH
T ss_pred Ccc
Confidence 976
No 188
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.39 E-value=4.1e-12 Score=115.01 Aligned_cols=120 Identities=17% Similarity=0.201 Sum_probs=80.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (221)
..+..+|+++|+.++|||||+++|++..... ......+.|.......+.. .+..+.+|||||+.+
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChHH
Confidence 3456899999999999999999998742100 0011234444433333444 668899999999643
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
+...+...+..+|++++|+|++++...+..+++..+... +. +++++++||+|+..
T Consensus 372 -----------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l-gI---P~IIVVINKiDLv~ 426 (1289)
T 3avx_A 372 -----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-GV---PYIIVFLNKCDMVD 426 (1289)
T ss_dssp -----------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH-TC---SCEEEEEECCTTCC
T ss_pred -----------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc-CC---CeEEEEEeeccccc
Confidence 234444567889999999999988777777777666543 32 23789999999875
No 189
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.39 E-value=1.3e-12 Score=115.07 Aligned_cols=122 Identities=27% Similarity=0.354 Sum_probs=85.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCccccc----------------ccCCCCcceeeEEEEEEee------CCceEEE
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS----------------RASSSGVTSTCEMQRTVLK------DGQVVNV 73 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~----------------~~~~~~~t~~~~~~~~~~~------~~~~~~l 73 (221)
-++.++|+++|+.++|||||..+|+....... .....++|......+..|. ++..+.|
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 34568999999999999999998864332100 1223456666666666662 1468999
Q ss_pred EeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618 74 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (221)
Q Consensus 74 iDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (221)
|||||+.||.. ++..++.. +|++++|+|+.++...+....+++..+. + .|.++++||+|+...+
T Consensus 90 IDTPGHvDF~~-------Ev~~aLr~----~DgavlvVDaveGV~~qT~~v~~~a~~~-~----lp~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 90 IDTPGHVDFTI-------EVERSLRV----LDGAVVVFCGTSGVEPQSETVWRQANKY-G----VPRIVYVNKMDRQGAN 153 (709)
T ss_dssp ECCCSCTTCHH-------HHHHHHHH----CSEEEEEEETTTCSCHHHHHHHHHHHHH-T----CCEEEEEECSSSTTCC
T ss_pred EeCCCCcccHH-------HHHHHHHH----hCeEEEEEECCCCCchhHHHHHHHHHHc-C----CCeEEEEccccccCcc
Confidence 99999999753 33344444 4999999999999999999988888765 2 3799999999997644
No 190
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.36 E-value=6.1e-12 Score=98.37 Aligned_cols=132 Identities=20% Similarity=0.245 Sum_probs=75.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeeEEEEEEe--eCCceEEEEeCCCCCCCCCCc---hH
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSAGS---EF 88 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~~~~~---~~ 88 (221)
++++++|++|+|||||+|+|+|...+..+.. ............+.- .-...++++|+||+....... +.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 6899999999999999999999876544311 111111111111110 012368999999997633211 11
Q ss_pred HHH----HHHHHHHhh----------cCCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 027618 89 VGK----EIVKCIGMA----------KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (221)
Q Consensus 89 ~~~----~~~~~~~~~----------~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (221)
+.. ......... ...+++.+++++.. .++++.+...++.+.+. .++++|++|+|.+.
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt-- 154 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMT-- 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSC--
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCC--
Confidence 211 122222211 12358888888854 68899997777777652 37999999999997
Q ss_pred hhhHHH
Q 027618 154 DETLED 159 (221)
Q Consensus 154 ~~~~~~ 159 (221)
......
T Consensus 155 ~~e~~~ 160 (270)
T 3sop_A 155 LEEKSE 160 (270)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 191
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.34 E-value=6.6e-12 Score=103.45 Aligned_cols=131 Identities=15% Similarity=0.185 Sum_probs=70.7
Q ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccC--CCCcceeeEEEEEEeeCC---ceEEEEeCCCCCCCCCCc
Q 027618 12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS--SSGVTSTCEMQRTVLKDG---QVVNVIDTPGLFDFSAGS 86 (221)
Q Consensus 12 ~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~---~~~~liDtPG~~~~~~~~ 86 (221)
+.-..+..+.++++|++|+|||||+|+|+|......... ..+.+.. ... +.+... ..++++|+||+..... .
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~-~v~Q~~~l~~~ltv~D~~~~g~~~~-~ 111 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNT-YDLQESNVRLKLTIVSTVGFGDQIN-K 111 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEE-EEEEC--CEEEEEEEEEECCCC-CC-H
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEE-EEeecCccccccchhhhhhhhhccc-c
Confidence 333444334599999999999999999999864211111 1122221 111 111121 2689999999976321 1
Q ss_pred hH--------HHHHHHHHHHhh---------cC--CCcE-EEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 027618 87 EF--------VGKEIVKCIGMA---------KD--GIHA-VLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG 146 (221)
Q Consensus 87 ~~--------~~~~~~~~~~~~---------~~--~~~~-il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk 146 (221)
.. +...+...+... .+ .+|+ ++++.+...+++..+..+++.|. . ..|+++|+||
T Consensus 112 ~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~----~--~~~vI~Vi~K 185 (427)
T 2qag_B 112 EDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD----S--KVNIIPIIAK 185 (427)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC----S--CSEEEEEESC
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh----h--CCCEEEEEcc
Confidence 11 112222222221 01 1344 55566777788888876666554 1 3479999999
Q ss_pred CCCCC
Q 027618 147 GDELE 151 (221)
Q Consensus 147 ~D~~~ 151 (221)
+|.+.
T Consensus 186 tD~Lt 190 (427)
T 2qag_B 186 ADAIS 190 (427)
T ss_dssp GGGSC
T ss_pred hhccc
Confidence 99986
No 192
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.32 E-value=2e-11 Score=96.98 Aligned_cols=128 Identities=20% Similarity=0.149 Sum_probs=62.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCc-ccccccCC----CCcceeeEEEEEEe---eCCceEEEEeCCCCCCCCCC---c
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRR-AFKSRASS----SGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAG---S 86 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~-~~~~~~~~----~~~t~~~~~~~~~~---~~~~~~~liDtPG~~~~~~~---~ 86 (221)
-.++|+++|++|+|||||+|+|++.. .+..+... ...+.......+.. .....+.++||||+...... .
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 34899999999999999999999873 32222100 00111111111111 12347899999999532110 0
Q ss_pred hHHHHHHH----HHHHhh---------cCCCcEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 87 EFVGKEIV----KCIGMA---------KDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 87 ~~~~~~~~----~~~~~~---------~~~~~~il~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
..+...+. ..+... ...+++++|+++... .+.+.+. +.++.. .. ..++++|+||+|...
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~---~~l~~l-~~--~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV---AFMKAI-HN--KVNIVPVIAKADTLT 169 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH---HHHHHH-TT--TSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH---HHHHHH-Hh--cCCEEEEEEeCCCCC
Confidence 11222111 222211 123466888887643 4777764 334443 22 237999999999875
No 193
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.30 E-value=3e-12 Score=99.45 Aligned_cols=82 Identities=12% Similarity=0.087 Sum_probs=45.6
Q ss_pred CCcEEEEEEeCCCC--CCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhccc-CCchhhhhHHHHH
Q 027618 103 GIHAVLVVFSVRSR--FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGRE-CPKPLKKGATKLR 177 (221)
Q Consensus 103 ~~~~il~v~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~~-~~~~l~~~~~~~~ 177 (221)
.+|++++|+|++++ .+... ..++..+.+.... ...|+++|+||+|+.... .....++.... ....+..++....
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~-~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~ 240 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK-TKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNV 240 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHH-TTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhcc-CCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCC
Confidence 57999999999865 55544 4556655544221 134899999999986411 12233333321 2234445555555
Q ss_pred hHHHHHHh
Q 027618 178 DQQFEVDS 185 (221)
Q Consensus 178 ~~~~~~~~ 185 (221)
++.+.++.
T Consensus 241 gv~elf~~ 248 (255)
T 3c5h_A 241 NVDLAFST 248 (255)
T ss_dssp SHHHHHHH
T ss_pred CHHHHHHH
Confidence 55554443
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.22 E-value=8.8e-12 Score=100.89 Aligned_cols=90 Identities=17% Similarity=0.092 Sum_probs=55.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC----------------CceEEEEeCCCCCCCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLFDFS 83 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtPG~~~~~ 83 (221)
.+|+++|.+|+|||||+|+|++...... ...++|..+....+.++. ...+.++||||+..+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~--~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAA--NYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 6899999999999999999998763211 122334444444444412 2469999999998642
Q ss_pred CCchHHHHHHHHHHHhhcCCCcEEEEEEeCCC
Q 027618 84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS 115 (221)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~ 115 (221)
...+.+...+. ..++.+|++++|+|+.+
T Consensus 81 ~~~~gl~~~fl----~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFL----ANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHH----HHHHTCSEEEEEEECSC
T ss_pred cccchHHHHHH----HHHHhcCeEEEEEecCC
Confidence 11111222222 23456799999999874
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.21 E-value=2.6e-11 Score=98.50 Aligned_cols=62 Identities=19% Similarity=0.120 Sum_probs=39.0
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 027618 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG 146 (221)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk 146 (221)
.+..+.||||||+.. .. ......+|++++|++........ .++.. -...|.++|+||
T Consensus 170 ~~~~~iiiDTpGi~~----~~----------~~~~~~aD~vl~V~d~~~~~~~~------~l~~~---~~~~p~ivVlNK 226 (355)
T 3p32_A 170 AGFDVILIETVGVGQ----SE----------VAVANMVDTFVLLTLARTGDQLQ------GIKKG---VLELADIVVVNK 226 (355)
T ss_dssp TTCCEEEEEECSCSS----HH----------HHHHTTCSEEEEEEESSTTCTTT------TCCTT---SGGGCSEEEEEC
T ss_pred CCCCEEEEeCCCCCc----HH----------HHHHHhCCEEEEEECCCCCccHH------HHHHh---HhhcCCEEEEEC
Confidence 467899999999764 11 01236789999999976322111 11110 112378999999
Q ss_pred CCCCC
Q 027618 147 GDELE 151 (221)
Q Consensus 147 ~D~~~ 151 (221)
+|+..
T Consensus 227 ~Dl~~ 231 (355)
T 3p32_A 227 ADGEH 231 (355)
T ss_dssp CCGGG
T ss_pred CCCcC
Confidence 99864
No 196
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.21 E-value=5e-13 Score=109.04 Aligned_cols=123 Identities=19% Similarity=0.205 Sum_probs=69.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccc-----cccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFK-----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
..+|+++|.+|+|||||+|+|++..... ......++|....... + +..+.++||||+.+.....+.+..+.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~--~~~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--L--DEESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--S--SSSCEEEECCCBCCTTSGGGGSCHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--e--cCCeEEEeCCCcCcHHHHHHHhhHHH
Confidence 3689999999999999999999874211 1112334444443322 2 33488999999987643333232222
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
...+. ....++.++|+++............++.+.. ...|+++++||.|.+.
T Consensus 236 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~-----~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 236 LKLIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVSG-----GRRAFTCHFSNRLTIH 287 (368)
T ss_dssp HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEES-----SSEEEEEEECTTSCEE
T ss_pred HHHhc-cccccCceEEEEcCCCEEEEcceEEEEEecC-----CCceEEEEecCccccc
Confidence 22221 1356688889988742211111111222211 1237999999999986
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.20 E-value=2.8e-11 Score=98.05 Aligned_cols=25 Identities=28% Similarity=0.084 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
....|+++|++|||||||+|+|++.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3589999999999999999999973
No 198
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.18 E-value=3.2e-11 Score=98.57 Aligned_cols=94 Identities=17% Similarity=0.118 Sum_probs=49.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeC----------------CceEEEEeCCCC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGL 79 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtPG~ 79 (221)
-....+|+++|.+|+|||||+|+|++..... ....++|..+....+.++. ...+.++||||+
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~--~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl 96 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASA--ENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL 96 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccc--cCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence 3445889999999999999999999986521 1233344444444444411 235899999999
Q ss_pred CCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCC
Q 027618 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS 115 (221)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~ 115 (221)
.......+.+... +...++.+|++++|+|+.+
T Consensus 97 ~~~as~~~glg~~----~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 97 VKGAHNGQGLGNA----FLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ----------CCH----HHHHHHTSSSEEEEEEC--
T ss_pred ccccchhhHHHHH----HHHHHHhcCeEEEEEecCC
Confidence 8643322222222 2334456799999999863
No 199
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.17 E-value=1.3e-10 Score=93.97 Aligned_cols=62 Identities=13% Similarity=0.064 Sum_probs=37.6
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 027618 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG 146 (221)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk 146 (221)
.+..+.++||||+.++ .. .....+|++++|+++..... ++.++.. ....|.++|+||
T Consensus 147 ~~~~i~liDTpG~~~~----~~----------~~~~~aD~vl~Vvd~~~~~~------~~~l~~~---~~~~p~ivv~NK 203 (341)
T 2p67_A 147 AGYDVVIVETVGVGQS----ET----------EVARMVDCFISLQIAGGGDD------LQGIKKG---LMEVADLIVINK 203 (341)
T ss_dssp TTCSEEEEEEECCTTH----HH----------HHHTTCSEEEEEECC------------CCCCHH---HHHHCSEEEECC
T ss_pred cCCCEEEEeCCCccch----HH----------HHHHhCCEEEEEEeCCccHH------HHHHHHh---hhcccCEEEEEC
Confidence 5678999999998752 11 02367899999999863211 1111110 011268999999
Q ss_pred CCCCC
Q 027618 147 GDELE 151 (221)
Q Consensus 147 ~D~~~ 151 (221)
+|...
T Consensus 204 ~Dl~~ 208 (341)
T 2p67_A 204 DDGDN 208 (341)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 99875
No 200
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.15 E-value=5e-13 Score=109.08 Aligned_cols=134 Identities=19% Similarity=0.156 Sum_probs=76.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC-----cccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGR-----RAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (221)
..+|+++|.+|+|||||+|+|++. ...... ...++|....... .+..+.++||||+.+.......+..+.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~-~~~gtT~~~~~~~----~~~~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTS-YFPGTTLDMIEIP----LESGATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEE-ECTTSSCEEEEEE----CSTTCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeec-CCCCeEEeeEEEE----eCCCeEEEeCCCcCcHHHHHHHHhHHH
Confidence 468999999999999999999987 222122 2334455444322 233478999999987543333222222
Q ss_pred HHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC-hhhHHHHhcc
Q 027618 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGR 163 (221)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~ 163 (221)
...+. ....++.++|+++............++.+.. ...|+++++||.|.+... -....+++++
T Consensus 237 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~-----~~~~~~~v~~k~d~~~~~~~~~~~~~~~~ 301 (369)
T 3ec1_A 237 LKIIT-PKREIHPRVYQLNEGQTLFFGGLARLDYIKG-----GRRSFVCYMANELTVHRTKLEKADSLYAN 301 (369)
T ss_dssp HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEES-----SSEEEEEEECTTSCEEEEEGGGHHHHHHH
T ss_pred HHHHh-cccccCceEEEEcCCceEEECCEEEEEEccC-----CCceEEEEecCCcccccccHHHHHHHHHH
Confidence 22221 1256799999998842211111111222211 123799999999987522 2334444443
No 201
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.12 E-value=1.9e-10 Score=94.15 Aligned_cols=94 Identities=16% Similarity=0.110 Sum_probs=62.6
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCC-----------------ceEEEEeCC
Q 027618 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG-----------------QVVNVIDTP 77 (221)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtP 77 (221)
.-..+.+|+++|++|||||||+|+|+|....... ...++|..+....+.+ .+ ..+.++|||
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~-~~p~tTi~p~~G~v~v-~~~r~~~l~~~~~~~~~v~~~i~lvD~p 93 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPA-NYPYATIDPEEAKVAV-PDERFDWLCEAYKPKSRVPAFLTVFDIA 93 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTT-CCSSCCCCTTEEEEEE-CCHHHHHHHHHHCCSEEECEEEEEECTG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCccccc-CCCceeecceeeeeee-CCcchhhhhhhcccccccCcceEEEecc
Confidence 3455689999999999999999999997642222 2334455555555555 32 357899999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCC
Q 027618 78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (221)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (221)
|+.......+.+...+.. .+..+|++++|+++.
T Consensus 94 Gl~~~~s~~e~L~~~fl~----~ir~~d~il~Vvd~~ 126 (392)
T 1ni3_A 94 GLTKGASTGVGLGNAFLS----HVRAVDAIYQVVRAF 126 (392)
T ss_dssp GGCCCCCSSSSSCHHHHH----HHTTCSEEEEEEECC
T ss_pred ccccCCcHHHHHHHHHHH----HHHHHHHHHHHHhcc
Confidence 998654333323223332 345679999999975
No 202
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.11 E-value=1.1e-10 Score=94.85 Aligned_cols=90 Identities=20% Similarity=0.165 Sum_probs=57.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEee--------------------CCceEEEEeCCCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--------------------DGQVVNVIDTPGL 79 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~~~~~~liDtPG~ 79 (221)
.+|+++|.+|+|||||+|+|++...... .....|..+......++ .+..+.++||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~--~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAA--NYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCS--SCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCccc--CCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 5789999999999999999998642111 12223333333333221 2357899999999
Q ss_pred CCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCC
Q 027618 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS 115 (221)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~ 115 (221)
..+....+.+...+... ++.+|++++|+|+.+
T Consensus 80 ~~~a~~~~~lg~~fl~~----ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAH----IREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHH----HHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHH----HHhCCEEEEEEECCC
Confidence 87543333333333333 345699999999874
No 203
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.08 E-value=5.6e-10 Score=95.67 Aligned_cols=109 Identities=18% Similarity=0.160 Sum_probs=63.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCccc-ccccCCCCcceeeEEEEEEe--eCCceEEEEeCCCCCCCCC-CchHHHH
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRAF-KSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSA-GSEFVGK 91 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~~~-~~~~~~~ 91 (221)
..+..+|+++|.+|+|||||+|+|+|.... ..+..+.+.|........+. ..+..+.|+||||+.+... .......
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~ 114 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSW 114 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHH
Confidence 345588999999999999999999998642 11111223333332222211 1467899999999987543 2221111
Q ss_pred HHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHH
Q 027618 92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT 130 (221)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~ 130 (221)
.+.-.+..+ + ++|+++...++..+...+..+.+
T Consensus 115 ~fala~lls----s--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 115 IFALAVLLS----S--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HHHHHHHHC----S--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HHHHHHHhc----C--eEEEECCCCccHHHHHHHHHHHH
Confidence 111111111 2 45566655788888666665544
No 204
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.05 E-value=4.4e-09 Score=88.73 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=71.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHh------CCcccccccCCCCcce-----------eeEEEE-----------------
Q 027618 17 NGERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASSSGVTS-----------TCEMQR----------------- 62 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~------~~~~~~~~~~~~~~t~-----------~~~~~~----------------- 62 (221)
.+..+|+++|++|+||||+++.|+ |..+......+..... ......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 445789999999999999999998 6654322211100000 000000
Q ss_pred EEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc-EE
Q 027618 63 TVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MI 141 (221)
Q Consensus 63 ~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~i 141 (221)
..+ .+..++||||||.... ......++..... . ..+|.+++|+|+..... .....+.+.+ . .| ..
T Consensus 179 ~~~-~~~DvvIIDTpG~~~~---~~~l~~el~~~~~-~-i~pd~vllVvDa~~g~~--~~~~a~~~~~----~--~~i~g 244 (504)
T 2j37_W 179 FKN-ENFEIIIVDTSGRHKQ---EDSLFEEMLQVAN-A-IQPDNIVYVMDASIGQA--CEAQAKAFKD----K--VDVAS 244 (504)
T ss_dssp HHH-TTCCEEEEEECCCCTT---CHHHHHHHHHHHH-H-HCCSEEEEEEETTCCTT--HHHHHHHHHH----H--HCCCC
T ss_pred HHH-CCCcEEEEeCCCCccc---chhHHHHHHHHHh-h-hcCceEEEEEecccccc--HHHHHHHHHh----h--cCceE
Confidence 011 4568999999998752 2334455544433 2 26799999999985543 2233333332 1 24 48
Q ss_pred EEEecCCCCC
Q 027618 142 VVFTGGDELE 151 (221)
Q Consensus 142 vv~tk~D~~~ 151 (221)
+|+||+|...
T Consensus 245 vVlNK~D~~~ 254 (504)
T 2j37_W 245 VIVTKLDGHA 254 (504)
T ss_dssp EEEECTTSCC
T ss_pred EEEeCCcccc
Confidence 9999999875
No 205
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.05 E-value=1.2e-09 Score=94.71 Aligned_cols=128 Identities=19% Similarity=0.168 Sum_probs=69.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccc-ccccC-CCCcce-----------eeE---------------------------
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAF-KSRAS-SSGVTS-----------TCE--------------------------- 59 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~-~~~~~-~~~~t~-----------~~~--------------------------- 59 (221)
+.|+++|++|||||||+++|+|...+ ..+.. ..+... ...
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~ 125 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI 125 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence 45999999999999999999998655 22211 111110 000
Q ss_pred ------------EEEEEeeCCceEEEEeCCCCCC--CCCCchHHHHHHHHHHHhhcCCC-cEEEEEEeCCCCCCHHHHHH
Q 027618 60 ------------MQRTVLKDGQVVNVIDTPGLFD--FSAGSEFVGKEIVKCIGMAKDGI-HAVLVVFSVRSRFSQEEEAA 124 (221)
Q Consensus 60 ------------~~~~~~~~~~~~~liDtPG~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~il~v~~~~~~~~~~~~~~ 124 (221)
......+....+.++|.||+.. +.+.+......+...+....... ..+++++..+..+. ....
T Consensus 126 ~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~~~ 203 (608)
T 3szr_A 126 AGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TTEA 203 (608)
T ss_dssp HCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TCHH
T ss_pred cCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--cHHH
Confidence 0001111235689999999875 33333445566666666544444 45556666543333 2234
Q ss_pred HHHHHHHhcccccccEEEEEecCCCCC
Q 027618 125 LHSLQTLFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 125 ~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (221)
++.+++.-.. ..+.++|+||+|.+.
T Consensus 204 l~la~~v~~~--g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 204 LSMAQEVDPE--GDRTIGILTKPDLVD 228 (608)
T ss_dssp HHHHHHHCSS--CCSEEEEEECGGGSS
T ss_pred HHHHHHHhhc--CCceEEEecchhhcC
Confidence 4445544221 236999999999875
No 206
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.01 E-value=9e-10 Score=86.60 Aligned_cols=66 Identities=21% Similarity=0.309 Sum_probs=42.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCch
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE 87 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~ 87 (221)
....+|+++|.+|+|||||+|+|++......+. ..+.|...+. +. .+..+.++||||+........
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~--~~--~~~~~~l~DtpG~~~~~~~~~ 183 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQW--VK--VGKELELLDTPGILWPKFEDE 183 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CC--EE--ETTTEEEEECCCCCCSCCCCH
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeEE--EE--eCCCEEEEECcCcCCCCCCCH
Confidence 345799999999999999999999987544432 2344544432 22 245789999999987654443
No 207
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.98 E-value=4.5e-09 Score=81.49 Aligned_cols=128 Identities=14% Similarity=0.036 Sum_probs=68.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHh-----CCcccccccCCCCccee----------eEEEEE------------------
Q 027618 17 NGERTVVLVGRTGNGKSATGNSIL-----GRRAFKSRASSSGVTST----------CEMQRT------------------ 63 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~-----~~~~~~~~~~~~~~t~~----------~~~~~~------------------ 63 (221)
.....+++.|+.|+||||+++.|+ |..+......+...... ......
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 445778889999999999999998 66543322221110000 000000
Q ss_pred ------------EeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHH-HHHHHHH
Q 027618 64 ------------VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQT 130 (221)
Q Consensus 64 ------------~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~-~~~~l~~ 130 (221)
.+..+..+.++||||..+. . ....+...+...+.. +++++|+|+....+..+.. .......
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~----~-~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~ 165 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMET----F-LFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALL 165 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHH----H-HHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccch----h-hhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHH
Confidence 0001237899999997631 1 111111122223345 8899999886455555422 1111111
Q ss_pred HhcccccccEEEEEecCCCCC
Q 027618 131 LFGKKIFDYMIVVFTGGDELE 151 (221)
Q Consensus 131 ~~~~~~~~~~ivv~tk~D~~~ 151 (221)
... ....|+++|+||+|...
T Consensus 166 ~~~-~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 166 IDL-RLGATTIPALNKVDLLS 185 (262)
T ss_dssp HHH-HHTSCEEEEECCGGGCC
T ss_pred Hhc-ccCCCeEEEEecccccc
Confidence 111 11347899999999876
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.93 E-value=1.1e-09 Score=88.16 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
..+..++++|++|||||||+|.|++.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34589999999999999999999853
No 209
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.93 E-value=7.1e-09 Score=85.40 Aligned_cols=119 Identities=20% Similarity=0.171 Sum_probs=69.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcc-eeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVT-STCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
...++++|++|||||||+|+|+|...+..+....+.+ ...............++++|+||+...... ..++...+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~----~~~~L~~~ 144 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFP----PDTYLEKM 144 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCC----HHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHH----HHHHHHHc
Confidence 3589999999999999999999976554442211111 100011111112246899999998742211 22222222
Q ss_pred HhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 027618 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (221)
. +...+..++ ++.. +...+...+...+... ..|+++|.||.|.+
T Consensus 145 ~--L~~~~~~~~-lS~G-~~~kqrv~la~aL~~~-----~~p~~lV~tkpdll 188 (413)
T 1tq4_A 145 K--FYEYDFFII-ISAT-RFKKNDIDIAKAISMM-----KKEFYFVRTKVDSD 188 (413)
T ss_dssp T--GGGCSEEEE-EESS-CCCHHHHHHHHHHHHT-----TCEEEEEECCHHHH
T ss_pred C--CCccCCeEE-eCCC-CccHHHHHHHHHHHhc-----CCCeEEEEecCccc
Confidence 1 223345554 7766 4566666666666543 23799999999865
No 210
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.80 E-value=4.9e-09 Score=81.52 Aligned_cols=60 Identities=30% Similarity=0.410 Sum_probs=39.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (221)
.+++++|.+|+|||||+|+|++......+. ..+.|..... +. .+..+.++||||+.+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~-~~g~T~~~~~--~~--~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA-QPGITKGIQW--FS--LENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCE--EE--CTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC-CCCCccceEE--EE--eCCCEEEEECCCcccCcC
Confidence 589999999999999999999987643332 2344443322 11 345788999999997654
No 211
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.79 E-value=1.6e-08 Score=83.64 Aligned_cols=123 Identities=19% Similarity=0.166 Sum_probs=69.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHh------CCcccccccCC---------------CCcceeeEE-------------EEE
Q 027618 18 GERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASS---------------SGVTSTCEM-------------QRT 63 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~------~~~~~~~~~~~---------------~~~t~~~~~-------------~~~ 63 (221)
++..|+++|++|+||||++..|+ |..+....... .+....... ...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46889999999999999999887 33221111000 000000000 000
Q ss_pred EeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 027618 64 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV 143 (221)
Q Consensus 64 ~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv 143 (221)
.. .+..++++||||..... .......++....... .++.+++|+|+... .......+.+.+. ..+..+|
T Consensus 176 ~~-~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~-----~~~~gVI 244 (433)
T 3kl4_A 176 VK-NKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQA-----SPIGSVI 244 (433)
T ss_dssp TT-TTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHH-----CSSEEEE
T ss_pred Hh-cCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhcc-----cCCcEEE
Confidence 01 35678999999975411 2334555555544333 45899999998743 2223333444432 2357899
Q ss_pred EecCCCCC
Q 027618 144 FTGGDELE 151 (221)
Q Consensus 144 ~tk~D~~~ 151 (221)
+||.|...
T Consensus 245 lTKlD~~a 252 (433)
T 3kl4_A 245 ITKMDGTA 252 (433)
T ss_dssp EECGGGCS
T ss_pred Eecccccc
Confidence 99999764
No 212
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.76 E-value=1.2e-07 Score=78.63 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=69.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHh------CCcccccccCCCCc-----------ceeeEEEEE---------------Ee
Q 027618 18 GERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASSSGV-----------TSTCEMQRT---------------VL 65 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~------~~~~~~~~~~~~~~-----------t~~~~~~~~---------------~~ 65 (221)
++..|+++|++|+||||++..|+ |..+......+... ......+.. ..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998887 33321111110000 000000000 00
Q ss_pred -eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEE
Q 027618 66 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (221)
Q Consensus 66 -~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (221)
..+..+++|||||... .......++...... ..+|.+++|+|+... .......+.+.+. .....+|+
T Consensus 179 ~~~~~DvVIIDTaGrl~---~d~~lm~el~~i~~~--~~pd~vlLVvDA~~g--q~a~~~a~~f~~~-----~~i~gVIl 246 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHK---EDKALIEEMKQISNV--IHPHEVILVIDGTIG--QQAYNQALAFKEA-----TPIGSIIV 246 (443)
T ss_dssp HHTTCSEEEEECCCCSS---CCHHHHHHHHHHHHH--HCCSEEEEEEEGGGG--GGHHHHHHHHHHS-----CTTEEEEE
T ss_pred HhCCCCEEEEECCCccc---chHHHHHHHHHHHHh--hcCceEEEEEeCCCc--hhHHHHHHHHHhh-----CCCeEEEE
Confidence 0246789999999764 234455555554322 346899999998743 2222333333332 23577999
Q ss_pred ecCCCCC
Q 027618 145 TGGDELE 151 (221)
Q Consensus 145 tk~D~~~ 151 (221)
||+|...
T Consensus 247 TKlD~~~ 253 (443)
T 3dm5_A 247 TKLDGSA 253 (443)
T ss_dssp ECCSSCS
T ss_pred ECCCCcc
Confidence 9999764
No 213
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.72 E-value=1.4e-08 Score=76.64 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
..+.|+++|.+|+|||||++.|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999865
No 214
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.63 E-value=1.1e-07 Score=78.94 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
.+...|+++|++++|||||+|.|+|.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 34578899999999999999999974
No 215
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.60 E-value=3.6e-07 Score=73.31 Aligned_cols=81 Identities=11% Similarity=0.064 Sum_probs=52.1
Q ss_pred EEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCC-------C-CCHHHHHHHHHHHH
Q 027618 59 EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS-------R-FSQEEEAALHSLQT 130 (221)
Q Consensus 59 ~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~-------~-~~~~~~~~~~~l~~ 130 (221)
......+ .+..+.+|||+|.. ..+..+..+++.++++|+|+|+++ . -...-..+..++.+
T Consensus 152 ~~~~~~~-~~v~l~iwDtaGQe-----------~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~ 219 (340)
T 4fid_A 152 HEYDFVV-KDIPFHLIDVGGQR-----------SERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKD 219 (340)
T ss_dssp EEEEEES-SSCEEEEEECCSCH-----------HHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHH
T ss_pred EEEEEEe-eeeeeccccCCCcc-----------cccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHH
Confidence 3344445 67789999999953 344556678899999999999871 1 11112334444444
Q ss_pred Hhccc--ccccEEEEEecCCCCC
Q 027618 131 LFGKK--IFDYMIVVFTGGDELE 151 (221)
Q Consensus 131 ~~~~~--~~~~~ivv~tk~D~~~ 151 (221)
..... ...|+++++||+|+..
T Consensus 220 i~~~~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 220 IMTNEFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp HHHCGGGTTSEEEEEEECHHHHH
T ss_pred HhhhhccCCCeEEEEEECchhhh
Confidence 43321 2348999999999764
No 216
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.59 E-value=6.1e-08 Score=80.47 Aligned_cols=121 Identities=17% Similarity=0.136 Sum_probs=67.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCc------ccccccCCC----------------------C-cceeeE-E--EEE-E
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRR------AFKSRASSS----------------------G-VTSTCE-M--QRT-V 64 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~------~~~~~~~~~----------------------~-~t~~~~-~--~~~-~ 64 (221)
++..|+++|++|+||||+++.|.+.. +......+. + .+..+. . ..+ .
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 34789999999999999999987642 110000000 0 011000 0 000 1
Q ss_pred eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccccc-ccEEEE
Q 027618 65 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIF-DYMIVV 143 (221)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ivv 143 (221)
+ .+..++++||||.... ......++... .....+|.+++|+++.... . .+..++. +... . +...+|
T Consensus 178 ~-~~~D~vIIDT~G~~~~---~~~l~~~l~~i--~~~~~~d~vllVvda~~g~--~---~~~~~~~-~~~~-~~~i~gvV 244 (432)
T 2v3c_C 178 F-KKADVLIIDTAGRHKE---EKGLLEEMKQI--KEITNPDEIILVIDGTIGQ--Q---AGIQAKA-FKEA-VGEIGSII 244 (432)
T ss_dssp T-SSCSEEEEECCCSCSS---HHHHHHHHHHT--TSSSCCSEEEEEEEGGGGG--G---HHHHHHH-HHTT-SCSCEEEE
T ss_pred h-hCCCEEEEcCCCCccc---cHHHHHHHHHH--HHHhcCcceeEEeeccccH--H---HHHHHHH-Hhhc-ccCCeEEE
Confidence 2 4567899999998741 23334444322 2233689999999986432 1 2222322 2221 2 348899
Q ss_pred EecCCCCC
Q 027618 144 FTGGDELE 151 (221)
Q Consensus 144 ~tk~D~~~ 151 (221)
+||+|...
T Consensus 245 lnK~D~~~ 252 (432)
T 2v3c_C 245 VTKLDGSA 252 (432)
T ss_dssp EECSSSCS
T ss_pred EeCCCCcc
Confidence 99999764
No 217
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.56 E-value=3.1e-07 Score=73.34 Aligned_cols=81 Identities=11% Similarity=0.081 Sum_probs=52.6
Q ss_pred EEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCC-------CCCC-HHHHHHHHHHHH
Q 027618 59 EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR-------SRFS-QEEEAALHSLQT 130 (221)
Q Consensus 59 ~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-------~~~~-~~~~~~~~~l~~ 130 (221)
....... .+..+.+|||.|.. ..+..+..+++.++++++|++++ +.-+ ..-..++.++.+
T Consensus 158 ~~~~~~~-~~v~l~iwDtgGQe-----------~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~ 225 (327)
T 3ohm_A 158 IEYPFDL-QSVIFRMVDVGGQR-----------SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRT 225 (327)
T ss_dssp EEEEEEE-TTEEEEEEEECCSH-----------HHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHH
T ss_pred EEEEEEe-eceeeEEEEcCCch-----------hHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHH
Confidence 3344555 67889999999953 23344567889999999999765 2211 122345555555
Q ss_pred Hhccc--ccccEEEEEecCCCCC
Q 027618 131 LFGKK--IFDYMIVVFTGGDELE 151 (221)
Q Consensus 131 ~~~~~--~~~~~ivv~tk~D~~~ 151 (221)
..... ...|+++++||+|+..
T Consensus 226 i~~~~~~~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 226 IITYPWFQNSSVILFLNKKDLLE 248 (327)
T ss_dssp HHTSGGGTTCEEEEEEECHHHHH
T ss_pred HhhhhccCCceEEEEEECchhhh
Confidence 54322 2348999999999753
No 218
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.53 E-value=1.2e-06 Score=69.44 Aligned_cols=125 Identities=16% Similarity=0.141 Sum_probs=67.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc------cCCCCcc-----------eeeEEEEEE---------------
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGVT-----------STCEMQRTV--------------- 64 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~------~~~~~~t-----------~~~~~~~~~--------------- 64 (221)
.++..|+++|++||||||+++.|++...+..+ ....... ....+....
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999865432211 0000000 000000000
Q ss_pred -eeCCceEEEEeCCCCCCCCCCchHHHHHH---HHHHH-hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc
Q 027618 65 -LKDGQVVNVIDTPGLFDFSAGSEFVGKEI---VKCIG-MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 139 (221)
Q Consensus 65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (221)
...+....++||+|.... ......++ +..+. .....++.+++++|+..+. .....+..+.+..+ .
T Consensus 180 ~~~~~~d~~llDt~G~~~~---~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~~-----~ 249 (304)
T 1rj9_A 180 MKARGYDLLFVDTAGRLHT---KHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVG-----L 249 (304)
T ss_dssp HHHHTCSEEEECCCCCCTT---CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHC-----C
T ss_pred HHhCCCCEEEecCCCCCCc---hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHcC-----C
Confidence 002335679999998642 22222332 22232 2335678888899876332 22233333333222 4
Q ss_pred EEEEEecCCCCC
Q 027618 140 MIVVFTGGDELE 151 (221)
Q Consensus 140 ~ivv~tk~D~~~ 151 (221)
.++++||.|...
T Consensus 250 t~iivTh~d~~a 261 (304)
T 1rj9_A 250 TGVIVTKLDGTA 261 (304)
T ss_dssp SEEEEECTTSSC
T ss_pred cEEEEECCcccc
Confidence 789999999764
No 219
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.51 E-value=4.2e-08 Score=77.73 Aligned_cols=59 Identities=29% Similarity=0.341 Sum_probs=34.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCC----C--CcceeeEEEEEEeeCCceEEEEeCCCCCCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----S--GVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~----~--~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (221)
+..++++|++|+|||||+|+|+|...+..+... . ..|.... .... . ...++||||+..+
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~-~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHT-S--GGLVADTPGFSSL 237 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEE-T--TEEEESSCSCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--Hhhc-C--CEEEecCCCcccc
Confidence 478999999999999999999998755444221 1 1222221 1111 1 4689999998764
No 220
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.47 E-value=6.3e-07 Score=75.05 Aligned_cols=134 Identities=13% Similarity=0.151 Sum_probs=71.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc------cCCCCc------ce-----eeEEEEEE---------------
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGV------TS-----TCEMQRTV--------------- 64 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~------~~~~~~------t~-----~~~~~~~~--------------- 64 (221)
..+..|+|+|++|||||||++.|+|...+..+ ...... .. ...+....
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 45689999999999999999999875432211 000000 00 00000000
Q ss_pred -eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh----cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc
Q 027618 65 -LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA----KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 139 (221)
Q Consensus 65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (221)
...+..++++||+|.... ...+..++.+.+... ...++-+++|+|+..+ ......++.+.+.++ .
T Consensus 371 a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~-----i 440 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG-----L 440 (503)
T ss_dssp HHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----C
T ss_pred HHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcC-----C
Confidence 013456889999998642 233444444433221 1236788999987633 222233333333322 3
Q ss_pred EEEEEecCCCCCCChhhHHHHh
Q 027618 140 MIVVFTGGDELEDNDETLEDYL 161 (221)
Q Consensus 140 ~ivv~tk~D~~~~~~~~~~~~l 161 (221)
..+|+||.|.... +..+-..+
T Consensus 441 tgvIlTKLD~tak-gG~~lsi~ 461 (503)
T 2yhs_A 441 TGITLTKLDGTAK-GGVIFSVA 461 (503)
T ss_dssp SEEEEECGGGCSC-CTHHHHHH
T ss_pred CEEEEEcCCCccc-ccHHHHHH
Confidence 5689999997532 33344433
No 221
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.47 E-value=1.6e-06 Score=69.48 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=67.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc------cCCCCcc-----------eeeEEEEEE---------------
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGVT-----------STCEMQRTV--------------- 64 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~------~~~~~~t-----------~~~~~~~~~--------------- 64 (221)
.++..++++|++||||||+++.|++...+..+ ....... .........
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 45689999999999999999999876432211 0000000 000000000
Q ss_pred -eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 027618 65 -LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV 143 (221)
Q Consensus 65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv 143 (221)
...+..+.++||+|..... .....++....... .+|-.++++|+.... ..++.++.. ... .....++
T Consensus 207 ~~~~~~d~vliDtaG~~~~~---~~l~~eL~~i~ral--~~de~llvLDa~t~~-----~~~~~~~~~-~~~-~~it~ii 274 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETN---RNLMDEMKKIARVT--KPNLVIFVGDALAGN-----AIVEQARQF-NEA-VKIDGII 274 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTT---TCHHHHHHHHHHHH--CCSEEEEEEEGGGTT-----HHHHHHHHH-HHH-SCCCEEE
T ss_pred HHhccchhhHHhhccchhHH---HHHHHHHHHHHHHh--cCCCCEEEEecHHHH-----HHHHHHHHH-HHh-cCCCEEE
Confidence 0023457789999986432 22344444433222 257888899876331 233333332 111 1246899
Q ss_pred EecCCCCC
Q 027618 144 FTGGDELE 151 (221)
Q Consensus 144 ~tk~D~~~ 151 (221)
+||.|...
T Consensus 275 lTKlD~~a 282 (328)
T 3e70_C 275 LTKLDADA 282 (328)
T ss_dssp EECGGGCS
T ss_pred EeCcCCcc
Confidence 99999753
No 222
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.41 E-value=4.3e-07 Score=71.99 Aligned_cols=58 Identities=26% Similarity=0.312 Sum_probs=37.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCC----CC--cceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SG--VTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~----~~--~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (221)
+..++++|++|+|||||+|+|+ ...+..+... .+ .|.... ... ......++||||+..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~--~~~--~~~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR--LIP--FGKGSFVGDTPGFSK 228 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE--EEE--ETTTEEEESSCCCSS
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE--EEE--cCCCcEEEECcCcCc
Confidence 4688999999999999999999 6655444211 12 222221 111 123568999999874
No 223
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.41 E-value=2.7e-06 Score=67.14 Aligned_cols=123 Identities=15% Similarity=0.128 Sum_probs=65.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC------cccccccCCCCcce-----------eeEEEE--------------E-Eee
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGR------RAFKSRASSSGVTS-----------TCEMQR--------------T-VLK 66 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~------~~~~~~~~~~~~t~-----------~~~~~~--------------~-~~~ 66 (221)
+..|+++|++|+||||++..|.+. .+...+........ ...... . ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999888733 22211111100000 000000 0 000
Q ss_pred -CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEe
Q 027618 67 -DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT 145 (221)
Q Consensus 67 -~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~t 145 (221)
.+..++++||||..... ..+....++..... ...+|.+++|+++... .. .++.++.. ... .+...+|+|
T Consensus 178 ~~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~--~~~~d~vllVvda~~g--~~---~~~~~~~~-~~~-~~i~gvVln 247 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYG-EEAALLEEMKNIYE--AIKPDEVTLVIDASIG--QK---AYDLASKF-NQA-SKIGTIIIT 247 (297)
T ss_dssp HTTCSEEEEECCCSCCTT-CHHHHHHHHHHHHH--HHCCSEEEEEEEGGGG--GG---HHHHHHHH-HHT-CTTEEEEEE
T ss_pred hCCCCEEEEeCCCCcccc-cHHHHHHHHHHHHH--HhcCCEEEEEeeCCch--HH---HHHHHHHH-Hhh-CCCCEEEEe
Confidence 45579999999987410 22233444433211 1256899999998632 22 23333322 221 223779999
Q ss_pred cCCCCC
Q 027618 146 GGDELE 151 (221)
Q Consensus 146 k~D~~~ 151 (221)
|+|...
T Consensus 248 k~D~~~ 253 (297)
T 1j8m_F 248 KMDGTA 253 (297)
T ss_dssp CGGGCT
T ss_pred CCCCCc
Confidence 999764
No 224
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.40 E-value=1.9e-07 Score=70.52 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
..++|+++|.+|+|||||++.++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45899999999999999999998653
No 225
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.38 E-value=6.1e-06 Score=68.48 Aligned_cols=123 Identities=18% Similarity=0.155 Sum_probs=67.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHh-------CCcccccccCCCCcc---------e--eeEEEE--------------E-
Q 027618 17 NGERTVVLVGRTGNGKSATGNSIL-------GRRAFKSRASSSGVT---------S--TCEMQR--------------T- 63 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~-------~~~~~~~~~~~~~~t---------~--~~~~~~--------------~- 63 (221)
.++..|+++|++|+||||+...|+ |..+......+.... . ...... +
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 446789999999999999998886 554432221111000 0 000000 0
Q ss_pred Eee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEE
Q 027618 64 VLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV 142 (221)
Q Consensus 64 ~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iv 142 (221)
... .+..++||||||.... ......++... .....++.+++|+++..... . +..++. |.... +..-+
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~--~~~~~p~~vllVvda~~g~~--~---~~~~~~-f~~~l-~i~gv 245 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQV--HASINPVETLFVVDAMTGQD--A---ANTAKA-FNEAL-PLTGV 245 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHH--HHHSCCSEEEEEEETTBCTT--H---HHHHHH-HHHHS-CCCCE
T ss_pred HHHhCCCCEEEEECCCcccc---cHHHHHHHHHH--HHhhcCcceeEEeecchhHH--H---HHHHHH-HhccC-CCeEE
Confidence 011 3567999999997642 22333444333 22346789999999874322 2 222222 22221 12458
Q ss_pred EEecCCCCC
Q 027618 143 VFTGGDELE 151 (221)
Q Consensus 143 v~tk~D~~~ 151 (221)
|+||.|...
T Consensus 246 VlnK~D~~~ 254 (433)
T 2xxa_A 246 VLTKVDGDA 254 (433)
T ss_dssp EEECTTSSS
T ss_pred EEecCCCCc
Confidence 999999754
No 226
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.30 E-value=6.1e-07 Score=71.07 Aligned_cols=59 Identities=27% Similarity=0.290 Sum_probs=37.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccccCC----CC--cceeeEEEEEEeeCCceEEEEeCCCCCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SG--VTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~----~~--~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (221)
+..++++|++|+|||||+|+|+|...+..+... .+ .|.... ... ......++|+||+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~--~~~--~~~~g~v~q~p~~~~ 233 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ--LLK--FDFGGYVVDTPGFAN 233 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC--EEE--CTTSCEEESSCSSTT
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE--EEE--cCCCCEEEECcCCCc
Confidence 468899999999999999999998766554221 11 122111 111 223567999999865
No 227
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.27 E-value=3.7e-07 Score=73.71 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcc-cccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRA-FKSR 48 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~-~~~~ 48 (221)
+..++++|++|+|||||+|+|+|... +..+
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G 245 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTN 245 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccC
Confidence 46899999999999999999999876 5443
No 228
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.26 E-value=6.5e-07 Score=70.72 Aligned_cols=132 Identities=16% Similarity=0.174 Sum_probs=68.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc-------cCCCCccee-----------eEE-EE----------EEeeC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------ASSSGVTST-----------CEM-QR----------TVLKD 67 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~-------~~~~~~t~~-----------~~~-~~----------~~~~~ 67 (221)
.++..|+++|++|+||||++..|++...+..+ ..+...+.. ... .. ... .
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~ 181 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-S 181 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-G
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-c
Confidence 34679999999999999999888654321111 000000000 000 00 011 3
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (221)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~ 147 (221)
+..++++||||.... ......++...+. ...++.+++|+++.... ..+..+.+.+. .....-+|+||.
T Consensus 182 ~~dlvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~~-----~~~~~~~~~~~--~l~~~giVltk~ 249 (296)
T 2px0_A 182 EYDHVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAKY-----EDMKHIVKRFS--SVPVNQYIFTKI 249 (296)
T ss_dssp GSSEEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBCH-----HHHHHHTTTTS--SSCCCEEEEECT
T ss_pred CCCEEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCCH-----HHHHHHHHHHh--cCCCCEEEEeCC
Confidence 457999999998742 2222333333321 12357888898876321 12222333333 122456788999
Q ss_pred CCCCCChhhHHHHhc
Q 027618 148 DELEDNDETLEDYLG 162 (221)
Q Consensus 148 D~~~~~~~~~~~~l~ 162 (221)
|.... ...+...+.
T Consensus 250 D~~~~-~g~~~~~~~ 263 (296)
T 2px0_A 250 DETTS-LGSVFNILA 263 (296)
T ss_dssp TTCSC-CHHHHHHHH
T ss_pred Ccccc-hhHHHHHHH
Confidence 97643 233444443
No 229
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.26 E-value=9.8e-06 Score=64.21 Aligned_cols=125 Identities=17% Similarity=0.213 Sum_probs=66.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc------cCCCCcc-----------eeeEEEE--------------E--
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGVT-----------STCEMQR--------------T-- 63 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~------~~~~~~t-----------~~~~~~~--------------~-- 63 (221)
.++..|+++|++|+||||++..|++......+ ....... ....... .
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 44578999999999999999888754321110 0000000 0000000 0
Q ss_pred EeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhh----cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc
Q 027618 64 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA----KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 139 (221)
Q Consensus 64 ~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (221)
....+..++++||||.. .....+..++....... ...++.+++|+++. +. ...++..+.. ... ...
T Consensus 182 a~~~~~dvvIiDtpg~~---~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~---t~--~~~l~~a~~~-~~~-~~i 251 (306)
T 1vma_A 182 ALARNKDVVIIDTAGRL---HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT---TG--QNGLVQAKIF-KEA-VNV 251 (306)
T ss_dssp HHHTTCSEEEEEECCCC---SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG---GH--HHHHHHHHHH-HHH-SCC
T ss_pred HHhcCCCEEEEECCCch---hhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC---CC--HHHHHHHHHH-Hhc-CCC
Confidence 01134568999999963 22344445554433221 23578999999886 22 2233333322 111 223
Q ss_pred EEEEEecCCCCC
Q 027618 140 MIVVFTGGDELE 151 (221)
Q Consensus 140 ~ivv~tk~D~~~ 151 (221)
.-+|+||.|...
T Consensus 252 ~gvVlTk~D~~~ 263 (306)
T 1vma_A 252 TGIILTKLDGTA 263 (306)
T ss_dssp CEEEEECGGGCS
T ss_pred CEEEEeCCCCcc
Confidence 568899999764
No 230
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.23 E-value=6.7e-06 Score=65.08 Aligned_cols=125 Identities=16% Similarity=0.232 Sum_probs=66.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc------cCCCCc-------ce----eeEEEE--EE-------------
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGV-------TS----TCEMQR--TV------------- 64 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~------~~~~~~-------t~----~~~~~~--~~------------- 64 (221)
.++..++++|++||||||+++.|+|...+..+ ...... .. ...+.. ..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~ 177 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 177 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHH
Confidence 45689999999999999999999876433221 000000 00 000000 00
Q ss_pred --eeCCceEEEEeCCCCCCCCCCchHHHHHHHH---HHHh-hcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccc
Q 027618 65 --LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK---CIGM-AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFD 138 (221)
Q Consensus 65 --~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (221)
...+....++||.|+... ......++.+ .+.. ....++-+++|+|+...+.... .++.+.+..+
T Consensus 178 ~~~~~~~d~~lldt~gl~~~---~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~g----- 247 (302)
T 3b9q_A 178 RGKEEGYDVVLCDTSGRLHT---NYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVG----- 247 (302)
T ss_dssp HHHHTTCSEEEECCCCCSSC---CHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTC-----
T ss_pred HHHHcCCcchHHhcCCCCcc---hhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhcC-----
Confidence 001234678999998743 2333333332 2222 2345777788888654443332 2233332212
Q ss_pred cEEEEEecCCCCC
Q 027618 139 YMIVVFTGGDELE 151 (221)
Q Consensus 139 ~~ivv~tk~D~~~ 151 (221)
..++++||.|...
T Consensus 248 ~t~iiiThlD~~~ 260 (302)
T 3b9q_A 248 ITGLILTKLDGSA 260 (302)
T ss_dssp CCEEEEECCSSCS
T ss_pred CCEEEEeCCCCCC
Confidence 4678999998764
No 231
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.23 E-value=6.2e-06 Score=66.73 Aligned_cols=125 Identities=17% Similarity=0.253 Sum_probs=66.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc------cCCCCc-------ce----eeEEEEEEe--------------
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGV-------TS----TCEMQRTVL-------------- 65 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~------~~~~~~-------t~----~~~~~~~~~-------------- 65 (221)
.++..|+++|++||||||+++.|++...+..+ ...... +. ...+.....
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~ 234 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 234 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHH
Confidence 45689999999999999999999876432221 000000 00 000000000
Q ss_pred ---eCCceEEEEeCCCCCCCCCCchHHHHHHH---HHHH-hhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccc
Q 027618 66 ---KDGQVVNVIDTPGLFDFSAGSEFVGKEIV---KCIG-MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFD 138 (221)
Q Consensus 66 ---~~~~~~~liDtPG~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (221)
..+....++||.|+... ......++. ..+. .....++-+++|+|+...+.... .++.+.+..+
T Consensus 235 ~~~~~~~d~~lldt~Gl~~~---~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~--~~~~~~~~~g----- 304 (359)
T 2og2_A 235 RGKEEGYDVVLCDTSGRLHT---NYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVG----- 304 (359)
T ss_dssp HHHHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTC-----
T ss_pred HHHhCCCHHHHHHhcCCChh---hhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH--HHHHHHHhcC-----
Confidence 01234678999998753 233333333 2222 23356777788888653443332 2233332212
Q ss_pred cEEEEEecCCCCC
Q 027618 139 YMIVVFTGGDELE 151 (221)
Q Consensus 139 ~~ivv~tk~D~~~ 151 (221)
..++++||.|...
T Consensus 305 ~t~iiiThlD~~~ 317 (359)
T 2og2_A 305 ITGLILTKLDGSA 317 (359)
T ss_dssp CCEEEEESCTTCS
T ss_pred CeEEEEecCcccc
Confidence 4779999998754
No 232
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=98.12 E-value=2.4e-05 Score=64.82 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=57.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhC-----------------CcccccccCCCCcceeeEEEE----EEeeCC--ceEE
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILG-----------------RRAFKSRASSSGVTSTCEMQR----TVLKDG--QVVN 72 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~-----------------~~~~~~~~~~~~~t~~~~~~~----~~~~~~--~~~~ 72 (221)
..+...|+++|+.++|||+|+|.|++ ...+..+....+.|.-..... ...+.+ ..++
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 34567888999999999999997652 122222222223333332221 111122 3589
Q ss_pred EEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHH
Q 027618 73 VIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT 130 (221)
Q Consensus 73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~ 130 (221)
++||.|+.+.......-..-+.-++..+ ..+|| +....+...+...+..+.+
T Consensus 144 llDTEG~~d~~~~~~~d~~ifaLa~LLS----S~~Iy--N~~~~i~~~~L~~L~~~te 195 (457)
T 4ido_A 144 LMDTQGTFDSQSTLRDSATVFALSTMIS----SIQVY--NLSQNVQEDDLQHLQLFTE 195 (457)
T ss_dssp EEEECCBTCTTCCHHHHHHHHHHHHHHC----SEEEE--EEESSCCHHHHHHHHHHHH
T ss_pred EEeccCCCCcccCccccHHHHHHHHHHh----hheee--cccccCCHHHHHHHHHHHH
Confidence 9999999986554322112222222222 34444 3333566666555555443
No 233
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.09 E-value=5.9e-05 Score=62.33 Aligned_cols=122 Identities=20% Similarity=0.208 Sum_probs=65.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccc------cccCCCCcc-----------eeeEEEE--------------EE-e
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFK------SRASSSGVT-----------STCEMQR--------------TV-L 65 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~------~~~~~~~~t-----------~~~~~~~--------------~~-~ 65 (221)
++..|+++|++|+||||++..|.+..... .+....... ....... +. .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 55789999999999999998876432211 000000000 0000000 00 0
Q ss_pred -eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEE
Q 027618 66 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (221)
Q Consensus 66 -~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (221)
..+..++++||||.... ......++....... .++.+++|+++... ...+..++. |... .....+|+
T Consensus 177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg-----q~av~~a~~-f~~~-l~i~GVIl 244 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG-----QEALSVARA-FDEK-VGVTGLVL 244 (425)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT-----THHHHHHHH-HHHH-TCCCEEEE
T ss_pred HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch-----HHHHHHHHH-HHhc-CCceEEEE
Confidence 13456899999997643 233444444432222 56888999998632 122233332 2221 22366899
Q ss_pred ecCCCCC
Q 027618 145 TGGDELE 151 (221)
Q Consensus 145 tk~D~~~ 151 (221)
||.|...
T Consensus 245 TKlD~~~ 251 (425)
T 2ffh_A 245 TKLDGDA 251 (425)
T ss_dssp ESGGGCS
T ss_pred eCcCCcc
Confidence 9998653
No 234
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.08 E-value=3.6e-05 Score=61.39 Aligned_cols=125 Identities=20% Similarity=0.199 Sum_probs=67.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccc------cccCCCCcc-------e-----eeEEEEE---------------
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK------SRASSSGVT-------S-----TCEMQRT--------------- 63 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~------~~~~~~~~t-------~-----~~~~~~~--------------- 63 (221)
.++..|+++|++|+||||++..|.+..... .+....... . ......+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~ 182 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFD 182 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHH
Confidence 456889999999999999998876542211 111110000 0 0000111
Q ss_pred ----EeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH---HHhh-cCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q 027618 64 ----VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC---IGMA-KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK 135 (221)
Q Consensus 64 ----~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~ 135 (221)
....+..++++||||... ..+....++... +... ...+|.+++|+++... ...++.++.. ...
T Consensus 183 ~l~~~~~~~yD~VIIDTpg~l~---~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~-----~~~l~~~~~~-~~~ 253 (320)
T 1zu4_A 183 AIKKAKEQNYDLLLIDTAGRLQ---NKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG-----QNGVIQAEEF-SKV 253 (320)
T ss_dssp HHHHHHHTTCSEEEEECCCCGG---GHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT-----HHHHHHHHHH-TTT
T ss_pred HHHHHHhcCCCEEEEcCCCccc---ccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc-----HHHHHHHHHH-hhc
Confidence 001355799999999764 122233343332 2211 2347899999988722 2344444443 322
Q ss_pred ccccEEEEEecCCCCC
Q 027618 136 IFDYMIVVFTGGDELE 151 (221)
Q Consensus 136 ~~~~~ivv~tk~D~~~ 151 (221)
....-+|+||.|...
T Consensus 254 -~~i~GvVltk~d~~~ 268 (320)
T 1zu4_A 254 -ADVSGIILTKMDSTS 268 (320)
T ss_dssp -SCCCEEEEECGGGCS
T ss_pred -CCCcEEEEeCCCCCC
Confidence 223568999999754
No 235
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.02 E-value=3.7e-06 Score=64.13 Aligned_cols=30 Identities=27% Similarity=0.210 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
+..++++|++|||||||++.|+|...+..+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G 60 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCce
Confidence 478999999999999999999998765443
No 236
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.98 E-value=7.6e-07 Score=65.95 Aligned_cols=26 Identities=38% Similarity=0.760 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
.+..|+|+||+|||||||++.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998653
No 237
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.98 E-value=4.6e-06 Score=63.17 Aligned_cols=30 Identities=23% Similarity=0.155 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
+..++++|++|||||||++.|+|...+..+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G 59 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDAPTEG 59 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 468899999999999999999998765433
No 238
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.95 E-value=6e-06 Score=64.04 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|||||||++.|+|...+..+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G 61 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSEG 61 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 3478999999999999999999998765443
No 239
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.94 E-value=6.5e-06 Score=63.84 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|||||||++.|+|...+..+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G 79 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLEDFDEG 79 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Confidence 3478999999999999999999998765443
No 240
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.94 E-value=7.4e-06 Score=62.79 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|||||||++.|+|...+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 57 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTAG 57 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCSBS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 3478999999999999999999998765443
No 241
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.94 E-value=6e-06 Score=63.05 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|||||||++.|+|...+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 59 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMDKVE 59 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 347899999999999999999999865443
No 242
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.93 E-value=6.7e-06 Score=63.53 Aligned_cols=31 Identities=26% Similarity=0.178 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|||||||++.|+|...+..+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G 70 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 70 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 3478999999999999999999998765443
No 243
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.93 E-value=6.2e-06 Score=63.75 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|||||||++.|+|...+..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G 62 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLKADEG 62 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3478999999999999999999998765443
No 244
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.93 E-value=6.3e-06 Score=64.32 Aligned_cols=30 Identities=23% Similarity=0.220 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
+..++++|++|||||||++.|+|...+..+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G 63 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILKPSSG 63 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence 478899999999999999999998765443
No 245
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.93 E-value=6.7e-06 Score=63.89 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
+..++++|++|||||||++.|+|...+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~ 65 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLSPSH 65 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSCCSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 47889999999999999999999875543
No 246
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.92 E-value=5.8e-06 Score=62.11 Aligned_cols=30 Identities=20% Similarity=0.100 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
+..++++|++|||||||++.|+|...+..+
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G 64 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLKPLKG 64 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 467899999999999999999998755433
No 247
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.92 E-value=7.1e-06 Score=62.33 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|||||||++.|+|...+..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 62 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCc
Confidence 347899999999999999999999865433
No 248
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.91 E-value=7.1e-06 Score=62.78 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|||||||++.|+|...+..+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 61 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3478999999999999999999998765443
No 249
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.90 E-value=7.6e-06 Score=62.90 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
+..++++|++|||||||++.|+|...+..+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 64 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 478999999999999999999998765443
No 250
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.90 E-value=4.2e-06 Score=62.10 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
+..++++|++|||||||++.|++..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998753
No 251
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.89 E-value=8.7e-06 Score=62.26 Aligned_cols=29 Identities=34% Similarity=0.299 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
..++++|++|||||||++.|+|...+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 53 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRG 53 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 57899999999999999999998765443
No 252
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.88 E-value=5.9e-06 Score=61.66 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
.++..++++|++|||||||++.|+|..
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345789999999999999999998864
No 253
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.88 E-value=8.5e-06 Score=63.74 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|||||||++.|+|...+..+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G 76 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEPATSG 76 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCe
Confidence 3478899999999999999999998765443
No 254
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.88 E-value=8.9e-06 Score=63.36 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|||||||++.|+|...+..+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G 74 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGG 74 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence 3478999999999999999999998765443
No 255
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.88 E-value=1.9e-05 Score=62.27 Aligned_cols=122 Identities=20% Similarity=0.201 Sum_probs=66.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc------ccCCCCcce---------eeEEEEE-----------------Ee
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS------RASSSGVTS---------TCEMQRT-----------------VL 65 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~------~~~~~~~t~---------~~~~~~~-----------------~~ 65 (221)
++..++++|++|+||||++..|++...... +........ ....... ..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 567899999999999999988765432111 000000000 0000000 00
Q ss_pred -eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEE
Q 027618 66 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (221)
Q Consensus 66 -~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (221)
..+..++++||||.... +.....++....... .++.+++|+++... ...++.++.. ... ....-+|+
T Consensus 177 ~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~~~-----~~~~~~~~~~-~~~-~~i~givl 244 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG-----QEALSVARAF-DEK-VGVTGLVL 244 (295)
T ss_dssp HHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT-----HHHHHHHHHH-HHH-TCCCEEEE
T ss_pred HhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCCCc-----HHHHHHHHHH-hhc-CCCCEEEE
Confidence 03457899999987642 233444444443332 46788899987621 2233333332 211 22356899
Q ss_pred ecCCCCC
Q 027618 145 TGGDELE 151 (221)
Q Consensus 145 tk~D~~~ 151 (221)
||.|...
T Consensus 245 nk~d~~~ 251 (295)
T 1ls1_A 245 TKLDGDA 251 (295)
T ss_dssp ECGGGCS
T ss_pred ECCCCCc
Confidence 9999764
No 256
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.88 E-value=9.2e-06 Score=63.12 Aligned_cols=31 Identities=26% Similarity=0.302 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|||||||++.|+|...+..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G 62 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence 3478999999999999999999998765443
No 257
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.88 E-value=6e-05 Score=60.89 Aligned_cols=84 Identities=11% Similarity=0.099 Sum_probs=54.4
Q ss_pred ceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC--------CHHHHHHHH
Q 027618 55 TSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF--------SQEEEAALH 126 (221)
Q Consensus 55 t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~--------~~~~~~~~~ 126 (221)
|.......+.+ .+..+.+|||+|...+. ..+..+++.++++|+|+|+++.- ...-..+..
T Consensus 180 T~Gi~~~~~~~-~~~~l~iwDt~GQe~~r-----------~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~ 247 (353)
T 1cip_A 180 TTGIVETHFTF-KDLHFKMFDVGGQRSER-----------KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK 247 (353)
T ss_dssp CCSEEEEEEEE-TTEEEEEEEECCSGGGG-----------GGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH
T ss_pred eeceEEEEEee-CCeeEEEEeCCCchhhh-----------HHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH
Confidence 33344455555 67889999999965421 33446789999999999998421 112234444
Q ss_pred HHHHHhccc--ccccEEEEEecCCCC
Q 027618 127 SLQTLFGKK--IFDYMIVVFTGGDEL 150 (221)
Q Consensus 127 ~l~~~~~~~--~~~~~ivv~tk~D~~ 150 (221)
++.+..... ...|+++++||.|+.
T Consensus 248 ~~~~i~~~~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 248 LFDSICNNKWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp HHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred HHHHHHcCccccCCcEEEEEECcCch
Confidence 454443321 234899999999975
No 258
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.86 E-value=9.6e-06 Score=62.54 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
+..++++|++|||||||++.|+|...+..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 59 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSCCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 46889999999999999999999865443
No 259
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.84 E-value=8.2e-06 Score=58.31 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|||||||++.|+|.. +..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G 61 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI-GHQG 61 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC-CCCC
Confidence 44789999999999999999999876 4443
No 260
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.83 E-value=1.2e-05 Score=61.85 Aligned_cols=29 Identities=31% Similarity=0.354 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFK 46 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~ 46 (221)
++..++++|++|||||||++.|+|...+.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 34688999999999999999999987544
No 261
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.83 E-value=7.8e-06 Score=59.63 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 027618 21 TVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~ 43 (221)
+++++|++|+|||||++.|+|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998865
No 262
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.82 E-value=9.2e-06 Score=59.22 Aligned_cols=25 Identities=28% Similarity=0.619 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
+..++++|++|||||||++.|++..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998753
No 263
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.82 E-value=6.1e-06 Score=60.51 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRA 44 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~ 44 (221)
..++|+|++|||||||++.|++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999997653
No 264
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.81 E-value=1e-05 Score=60.00 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
++..++++|++|||||||++.|++.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999876
No 265
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.79 E-value=1.4e-05 Score=62.76 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
++..++++|++|+|||||++.|+|...+..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~ 92 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSE 92 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSCEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 347889999999999999999999865443
No 266
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.79 E-value=8.8e-06 Score=61.28 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
+..++++|++|||||||++.|+|..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999999854
No 267
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.79 E-value=1.6e-05 Score=58.93 Aligned_cols=82 Identities=9% Similarity=-0.018 Sum_probs=49.1
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 027618 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (221)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~ 147 (221)
...++++|||+... . ... ..+..+|.+++++..+ ..+......++.+.+........++.+|+|+.
T Consensus 75 ~yD~viiD~~~~~~-----~----~~~----~~l~~ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS-----V----ITS----AAVMVSDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSSS-----H----HHH----HHHHHCSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCCEEEEECCCCCC-----H----HHH----HHHHHCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 45789999998653 1 111 2223358999999888 44444467777776542212222568999999
Q ss_pred CCCCCChhhHHHHhcc
Q 027618 148 DELEDNDETLEDYLGR 163 (221)
Q Consensus 148 D~~~~~~~~~~~~l~~ 163 (221)
+........+.+++++
T Consensus 141 ~~~~~~~~~~~~~l~~ 156 (206)
T 4dzz_A 141 IEMATMLNVLKESIKD 156 (206)
T ss_dssp CTTEEEEHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHH
Confidence 9543223345555553
No 268
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.79 E-value=1.5e-05 Score=61.38 Aligned_cols=25 Identities=32% Similarity=0.528 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
++..++++|++|+|||||++.|+|.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999996
No 269
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.78 E-value=1.6e-05 Score=64.28 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=26.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
+..++++|++|||||||++.|+|...+..+
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G 59 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQPDSG 59 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence 478899999999999999999998766544
No 270
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.78 E-value=1.1e-05 Score=60.78 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~ 44 (221)
++..++++||+|||||||++.|+|...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 457899999999999999999998654
No 271
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.77 E-value=1.7e-05 Score=64.10 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|||||||+++|+|...+..+
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G 83 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCCCce
Confidence 3478999999999999999999998765443
No 272
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.77 E-value=1.1e-05 Score=63.92 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|||||||++.|+|...+..+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G 109 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYDISSG 109 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCCCc
Confidence 3478999999999999999999998765443
No 273
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.77 E-value=1.6e-05 Score=61.76 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
++..++++|++|||||||++.|+|.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3478999999999999999999997
No 274
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.75 E-value=1.7e-05 Score=61.36 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~ 44 (221)
++..++++|++|||||||++.|+|...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 347899999999999999999999764
No 275
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.75 E-value=1.9e-05 Score=61.17 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
+..++++|++|+|||||++.|+|.. +..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G 58 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSG 58 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS-CCEE
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC-CCCc
Confidence 4789999999999999999999987 6544
No 276
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.74 E-value=2.1e-05 Score=57.55 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
++..|+++|++||||||+++.|++.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3478999999999999999999986
No 277
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.74 E-value=2.2e-05 Score=63.93 Aligned_cols=30 Identities=37% Similarity=0.422 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
+..++++|++|||||||++.|+|...+..+
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G 58 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSG 58 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCCCCCe
Confidence 478899999999999999999998765443
No 278
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.73 E-value=2.2e-05 Score=63.48 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|||||||++.|+|...+..+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTSG 58 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCCCCcc
Confidence 3478899999999999999999998765443
No 279
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.72 E-value=2.3e-05 Score=63.44 Aligned_cols=31 Identities=29% Similarity=0.313 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|||||||++.|+|...+..+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTSG 58 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCce
Confidence 3478899999999999999999998765443
No 280
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.72 E-value=2.2e-05 Score=63.32 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=25.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
+..++++|++|||||||++.|+|...+..+
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 70 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLERPTKG 70 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCcc
Confidence 478899999999999999999998765443
No 281
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.72 E-value=8.3e-06 Score=61.01 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
+..++++|++|||||||++.|+|. .+..+
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G 50 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK 50 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH-HHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CCcCC
Confidence 467899999999999999999998 65444
No 282
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.72 E-value=1.6e-05 Score=59.23 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRA 44 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~ 44 (221)
..++..|+++|++|||||||++.|.+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34568999999999999999999987653
No 283
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.70 E-value=2.7e-05 Score=63.27 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|||||||++.|+|...+..+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 66 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 66 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCce
Confidence 3478899999999999999999998765443
No 284
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.68 E-value=2.7e-05 Score=56.29 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
++..++++|++|||||||++.+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 357899999999999999998654
No 285
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.68 E-value=2e-05 Score=58.78 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
.++..|+++|++|||||||++.|.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35578999999999999999999875
No 286
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.67 E-value=2.8e-05 Score=63.22 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
+..++++|++|||||||++.|+|...+..+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRG 58 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCCCCcc
Confidence 468899999999999999999998765544
No 287
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.67 E-value=2e-05 Score=63.46 Aligned_cols=31 Identities=29% Similarity=0.300 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|||||||++.|+|...+..+
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 55 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSG 55 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCc
Confidence 3478999999999999999999998765443
No 288
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.66 E-value=2.3e-05 Score=59.95 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=22.5
Q ss_pred CCCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
.+.++.++.-+. +..|+++|++|||||||++.|.+.
T Consensus 13 ~~l~~isl~i~~--g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 13 LGTENLYFQSMR--PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ----------CC--SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eeecceeccCCC--CEEEEEECCCCCCHHHHHHHHHHH
Confidence 345555555443 478999999999999999998764
No 289
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00035 Score=57.88 Aligned_cols=71 Identities=20% Similarity=0.282 Sum_probs=43.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (221)
+++-|+|.||+|+|||++++++++.. +..++.++.+.+.+..... ....+...+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~------------------------~~~~~~v~~s~l~sk~~Ge--se~~ir~~F 267 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATI------------------------GANFIFSPASGIVDKYIGE--SARIIREMF 267 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH------------------------TCEEEEEEGGGTCCSSSSH--HHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh------------------------CCCEEEEehhhhccccchH--HHHHHHHHH
Confidence 45789999999999999999998642 1223445555555422222 123333333
Q ss_pred HhhcCCCcEEEEEEeCC
Q 027618 98 GMAKDGIHAVLVVFSVR 114 (221)
Q Consensus 98 ~~~~~~~~~il~v~~~~ 114 (221)
..+.....+|||+.+++
T Consensus 268 ~~A~~~~P~IifiDEiD 284 (437)
T 4b4t_L 268 AYAKEHEPCIIFMDEVD 284 (437)
T ss_dssp HHHHHSCSEEEEEECCC
T ss_pred HHHHhcCCceeeeeccc
Confidence 33333445788877765
No 290
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.63 E-value=3e-05 Score=57.85 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
++..|+++|++||||||+++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998764
No 291
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.62 E-value=2.9e-05 Score=60.12 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRA 44 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~ 44 (221)
.++..++++|++|||||||+++|++...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 4557899999999999999999988654
No 292
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.62 E-value=1.9e-05 Score=63.76 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|||||||++.|+|...+..+
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 60 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTG 60 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence 3478899999999999999999998765544
No 293
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00065 Score=55.55 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
+++-|+|.||+|+|||++.+++++.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999864
No 294
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.58 E-value=5e-05 Score=64.75 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=27.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
.++..++++|++|||||||++.|+|...+..+
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G 54 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFG 54 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 34578999999999999999999998765544
No 295
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.57 E-value=3.3e-05 Score=61.05 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
++..++++|++|+|||||++.|+|..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45789999999999999999998753
No 296
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.57 E-value=2.6e-05 Score=59.12 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=16.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHh-CCc
Q 027618 19 ERTVVLVGRTGNGKSATGNSIL-GRR 43 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~-~~~ 43 (221)
+..++|+|++||||||+++.|+ +..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4789999999999999999999 764
No 297
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.57 E-value=0.00018 Score=58.30 Aligned_cols=81 Identities=14% Similarity=0.083 Sum_probs=48.7
Q ss_pred eEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC--------CHHHHHHHHHHH
Q 027618 58 CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF--------SQEEEAALHSLQ 129 (221)
Q Consensus 58 ~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~--------~~~~~~~~~~l~ 129 (221)
.....+.+ .+..+.+|||+|...+ +..+..++..++++|||+++++.- ...-.....++.
T Consensus 191 i~~~~~~~-~~~~l~i~Dt~Gq~~~-----------r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~ 258 (362)
T 1zcb_A 191 IHEYDFEI-KNVPFKMVDVGGQRSE-----------RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFE 258 (362)
T ss_dssp EEEEEEEE-TTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHH
T ss_pred eEEEEeee-CCeEEEEEeccchhhh-----------hhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHH
Confidence 33344555 6788999999997532 233446788999999999998410 111233334444
Q ss_pred HHhccc--ccccEEEEEecCCCC
Q 027618 130 TLFGKK--IFDYMIVVFTGGDEL 150 (221)
Q Consensus 130 ~~~~~~--~~~~~ivv~tk~D~~ 150 (221)
...... ...|+++++||.|+.
T Consensus 259 ~i~~~~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 259 TIVNNRVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp HHHTCGGGTTSEEEEEEECHHHH
T ss_pred HHhcchhhCCCCEEEEEEChhhh
Confidence 433321 234899999999975
No 298
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00051 Score=56.53 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
.++-|+|.||+|+|||++++++++.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHH
Confidence 4478999999999999999999865
No 299
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.57 E-value=4.8e-05 Score=54.87 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=22.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
..++..|+++|++||||||+.+.|.+
T Consensus 5 ~~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 5 NHDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp CTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 34457899999999999999999865
No 300
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.55 E-value=0.00097 Score=60.35 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=25.9
Q ss_pred CCCCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 027618 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSI 39 (221)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l 39 (221)
..++++.++.... +..++++||+|+||||+++.+
T Consensus 649 ~~v~ndisl~~~~--g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 649 AFIPNDVYFEKDK--QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CCCCEEEEEETTT--BCEEEEECCTTSSHHHHHHHH
T ss_pred eeecccceeecCC--CeEEEEECCCCCCHHHHHHHH
Confidence 3455555554433 478999999999999999998
No 301
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.53 E-value=4.5e-05 Score=60.59 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRRA 44 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~~ 44 (221)
..++..|+++|++|||||||++.|.|...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 45668999999999999999999988654
No 302
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.53 E-value=6.2e-05 Score=64.25 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=27.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
.++..++++|++|||||||++.|+|...+..+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G 76 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLC 76 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 56689999999999999999999998765444
No 303
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.52 E-value=6e-05 Score=57.65 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHh---CCcccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSIL---GRRAFK 46 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~---~~~~~~ 46 (221)
+..|+++|++||||||+++.|+ |...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4689999999999999999999 876543
No 304
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.52 E-value=5e-05 Score=56.21 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
+..|+++|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 305
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.001 Score=54.95 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
+++-|+|.||+|+|||++++++++.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999864
No 306
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.52 E-value=3.7e-05 Score=56.55 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRA 44 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~ 44 (221)
.+++++|++|+|||||++.|+|...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4689999999999999999998654
No 307
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.50 E-value=4.2e-05 Score=62.55 Aligned_cols=27 Identities=37% Similarity=0.425 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~ 44 (221)
++..++++|++|||||||++.|+|...
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 347899999999999999999999764
No 308
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.49 E-value=7.2e-05 Score=64.67 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=27.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
.++..++++|++|+|||||++.|+|...+..+
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G 132 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLG 132 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence 45689999999999999999999998766554
No 309
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.48 E-value=0.00022 Score=58.42 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=51.0
Q ss_pred EEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCC----------CCCHHHHHHHHHHH
Q 027618 60 MQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS----------RFSQEEEAALHSLQ 129 (221)
Q Consensus 60 ~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~----------~~~~~~~~~~~~l~ 129 (221)
...+.+ .+..+.+|||+|...+. ..+..+++.++++|+|+++++ .-+. ..+..++.
T Consensus 209 ~~~~~~-~~v~l~iwDtaGQe~~r-----------~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~--~e~~~~~~ 274 (402)
T 1azs_C 209 ETKFQV-DKVNFHMFDVGGQRDER-----------RKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRL--QEALNLFK 274 (402)
T ss_dssp EEEEEE-TTEEEEEEEECCSGGGG-----------GGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHH--HHHHHHHH
T ss_pred EEEeec-CCccceecccchhhhhh-----------hhhHhhccCCCEEEEEEECcccccccccccccchH--HHHHHHHH
Confidence 344455 67889999999975422 334467889999999999985 2222 23344444
Q ss_pred HHhcc--cccccEEEEEecCCCCC
Q 027618 130 TLFGK--KIFDYMIVVFTGGDELE 151 (221)
Q Consensus 130 ~~~~~--~~~~~~ivv~tk~D~~~ 151 (221)
+.... ....|+++|+||+|+..
T Consensus 275 ~i~~~~~~~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 275 SIWNNRWLRTISVILFLNKQDLLA 298 (402)
T ss_dssp HHHTCTTCSSCCEEEEEECHHHHH
T ss_pred HHHhcccCCCCeEEEEEEChhhhh
Confidence 44322 12348999999999753
No 310
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.48 E-value=2e-05 Score=57.74 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~ 42 (221)
+-|+|+||+|||||||++.|+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 34889999999999999999754
No 311
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00067 Score=56.36 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
+++-|+|.||+|+|||+|.+++++.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 4578999999999999999999864
No 312
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.46 E-value=6.6e-05 Score=60.89 Aligned_cols=28 Identities=32% Similarity=0.574 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAF 45 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~ 45 (221)
++..++++|++|+|||||+++|++...+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3468999999999999999999997643
No 313
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.46 E-value=6.2e-05 Score=55.67 Aligned_cols=26 Identities=27% Similarity=0.555 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
.++..|+++|++||||||+++.|.+.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999998754
No 314
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.43 E-value=6e-05 Score=55.12 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027618 20 RTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~ 41 (221)
..++++|++||||||+++.|++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999975
No 315
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.43 E-value=9.7e-05 Score=56.79 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHh---CCcccc
Q 027618 17 NGERTVVLVGRTGNGKSATGNSIL---GRRAFK 46 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~---~~~~~~ 46 (221)
.++..|+++|++||||||+++.|. |...+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 345789999999999999999998 766543
No 316
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.43 E-value=9.5e-05 Score=63.95 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=27.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
.++..++++|++|+|||||++.|+|...+..+
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G 146 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLC 146 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCCCCCC
Confidence 56689999999999999999999998765544
No 317
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.41 E-value=9.6e-05 Score=63.92 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|+|||||++.|+|...+..+
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 410 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYDVDRG 410 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCCCe
Confidence 3579999999999999999999998765443
No 318
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.41 E-value=8.7e-05 Score=58.82 Aligned_cols=28 Identities=18% Similarity=0.180 Sum_probs=24.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
...+..|+++|++|||||||++.|.+..
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3556899999999999999999998753
No 319
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.40 E-value=7.5e-05 Score=56.14 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
++..++++|++|||||||++.|++..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998743
No 320
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.40 E-value=0.0001 Score=63.60 Aligned_cols=31 Identities=35% Similarity=0.479 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|+|||||++.|+|...+..+
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G 398 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEG 398 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccCCCCC
Confidence 3478999999999999999999998765443
No 321
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.40 E-value=9.9e-05 Score=56.20 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHh
Q 027618 17 NGERTVVLVGRTGNGKSATGNSIL 40 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~ 40 (221)
.++..++++|++|||||||++.|+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 345789999999999999999988
No 322
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.39 E-value=7.1e-05 Score=59.94 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAF 45 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~ 45 (221)
+..++++|++|+|||||+++|+|...+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 457899999999999999999987643
No 323
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.39 E-value=0.00011 Score=63.46 Aligned_cols=31 Identities=39% Similarity=0.474 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|+|||||++.|+|...+..+
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 398 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSG 398 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence 3478999999999999999999998765443
No 324
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.38 E-value=0.0014 Score=59.25 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=28.7
Q ss_pred CCCCCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
+..++++.++..+. +..++++||+|+||||+++.+.+
T Consensus 659 ~~~V~ndvsl~~~~--g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 659 DQYVPNNTDLSEDS--ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SSSCCEEEEECTTS--CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CceecccccccCCC--CeEEEEECCCCCchHHHHHHHHH
Confidence 35567777666543 37899999999999999998754
No 325
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.35 E-value=9.8e-05 Score=63.84 Aligned_cols=31 Identities=29% Similarity=0.293 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|+|||||++.|+|...+..+
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G 399 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYDPASG 399 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCc
Confidence 3478999999999999999999998765443
No 326
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.35 E-value=6.3e-05 Score=62.88 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
.+.+++++|++|||||||++.|+|...+..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~ 166 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFN 166 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcccccC
Confidence 457899999999999999999999865433
No 327
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.34 E-value=0.00011 Score=54.31 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
.++..|+++|++||||||+.+.|.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999987654
No 328
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.34 E-value=0.00014 Score=62.03 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|||||||++.|+|...+..+
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G 323 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEITADEG 323 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSBC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4568899999999999999999998765544
No 329
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.34 E-value=0.0001 Score=59.57 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~ 44 (221)
...++++|++|||||||+++|++...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 45899999999999999999987643
No 330
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.33 E-value=0.0023 Score=48.88 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
....|++.|++|+|||++++++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3466899999999999999998753
No 331
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.32 E-value=0.00016 Score=61.75 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|+|||||++.|+|...+..+
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G 341 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 341 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 4578999999999999999999998765544
No 332
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.31 E-value=9e-05 Score=63.84 Aligned_cols=31 Identities=35% Similarity=0.309 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|+|||||++.|+|...+..+
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 396 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYDVTSG 396 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence 3578999999999999999999998765443
No 333
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.31 E-value=9.4e-05 Score=53.13 Aligned_cols=23 Identities=39% Similarity=0.702 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~ 42 (221)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998764
No 334
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.31 E-value=0.00013 Score=54.03 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
.+..|+++|++||||||+++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998754
No 335
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.00069 Score=56.06 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
+++-|+|.||||+|||++++++++.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 4578999999999999999999864
No 336
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.30 E-value=0.00017 Score=62.42 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|+|||||++.|+|...+..+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G 411 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 411 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 4578999999999999999999998765544
No 337
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.29 E-value=0.00012 Score=59.58 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRA 44 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~ 44 (221)
.++..++++|++|+||||++++|++...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3457899999999999999999988643
No 338
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.28 E-value=0.00016 Score=57.54 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
...+..|+++|++|||||||++.|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 455689999999999999999998654
No 339
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.27 E-value=0.00013 Score=61.84 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~ 44 (221)
+..++++|+|||||||++++|++...
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45699999999999999999998754
No 340
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.26 E-value=0.00015 Score=54.88 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
.++..|++.|++||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45689999999999999999999875
No 341
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.26 E-value=0.00011 Score=53.23 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~ 44 (221)
+..++++|++|+|||||++++++...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47889999999999999999987653
No 342
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.25 E-value=0.00028 Score=52.29 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
...+..|+++|++|+||||+.+.|.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999999876
No 343
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.25 E-value=0.00014 Score=62.78 Aligned_cols=31 Identities=29% Similarity=0.235 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|+|||||++.|+|...+..+
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G 398 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLIDPERG 398 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCCc
Confidence 3578999999999999999999998765443
No 344
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.23 E-value=0.00016 Score=59.75 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~ 44 (221)
+...++++|++|+|||||+++|++...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 446899999999999999999988653
No 345
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.22 E-value=0.00012 Score=51.67 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~ 44 (221)
++..++++|++|+|||+|++++++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999987643
No 346
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.22 E-value=0.0017 Score=50.43 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
...+++.|++|+|||++++++...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 467999999999999999999754
No 347
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.22 E-value=0.00013 Score=59.24 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAF 45 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~ 45 (221)
..+++++|++|+|||||++.|+|...+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578999999999999999999987544
No 348
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.21 E-value=6.9e-05 Score=54.16 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRA 44 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~ 44 (221)
..++++|++|+|||||++.|++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5789999999999999999987654
No 349
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00026 Score=61.21 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
..++++|++|+|||||++.|+|...+..+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G 407 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEG 407 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 56899999999999999999998776554
No 350
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.18 E-value=0.0012 Score=52.09 Aligned_cols=68 Identities=13% Similarity=-0.024 Sum_probs=39.3
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhccccccc-EEEEEe
Q 027618 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDY-MIVVFT 145 (221)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~-~ivv~t 145 (221)
...++|+|||+...... +...+..+|.+++|+..+ ..+... ..+++.+.+. +.....+ +-+|+|
T Consensus 156 ~yD~ViiD~p~~~~~~~------------~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~-~~~~~~~~~gvV~N 221 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG------------FAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAK-SKNYKVRLAGCVAN 221 (307)
T ss_dssp SCSEEEEEECCSSCCGG------------GGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTT-TTTCCCEEEEEEEE
T ss_pred cCCEEEEeCCCccchHH------------HHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHh-hhcCCCceEEEEEe
Confidence 45789999987654211 112456679999999776 332222 4455555543 2121123 449999
Q ss_pred cCCC
Q 027618 146 GGDE 149 (221)
Q Consensus 146 k~D~ 149 (221)
+.+.
T Consensus 222 ~~~~ 225 (307)
T 3end_A 222 RSRA 225 (307)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 9984
No 351
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.18 E-value=0.00076 Score=53.17 Aligned_cols=97 Identities=10% Similarity=-0.043 Sum_probs=59.4
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCC-CHHH-HHHHHHHHHHhcccccccEEEEEec
Q 027618 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEE-EAALHSLQTLFGKKIFDYMIVVFTG 146 (221)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk 146 (221)
..+.+||| ...+..- ...+++.+|++++|+|++++. +... ..|+..+.. . ..|+++|+||
T Consensus 63 ~~~~iwD~--qer~~~l-----------~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~--~~piilv~NK 124 (301)
T 1u0l_A 63 GSGVIENV--LHRKNLL-----------TKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---N--ELETVMVINK 124 (301)
T ss_dssp SSEEEEEE--CCCSCEE-----------TTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---T--TCEEEEEECC
T ss_pred CeEEEEEE--cccccee-----------eccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---C--CCCEEEEEeH
Confidence 37899999 3332211 124678899999999998654 3332 445554443 1 3479999999
Q ss_pred CCCCCCChhh---HHHHhcccC--CchhhhhHHHHHhHHHHHHh
Q 027618 147 GDELEDNDET---LEDYLGREC--PKPLKKGATKLRDQQFEVDS 185 (221)
Q Consensus 147 ~D~~~~~~~~---~~~~l~~~~--~~~l~~~~~~~~~~~~~~~~ 185 (221)
+|+.. ... ..+++.... ...+..|+....++.+.+..
T Consensus 125 ~DL~~--~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~ 166 (301)
T 1u0l_A 125 MDLYD--EDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEY 166 (301)
T ss_dssp GGGCC--HHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred HHcCC--chhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHH
Confidence 99875 322 334443222 34555666666666666654
No 352
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.18 E-value=0.00016 Score=58.30 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCccc
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAF 45 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~ 45 (221)
.++-+++++|++|+|||||++.|+|...+
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34578999999999999999999987643
No 353
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.16 E-value=0.00014 Score=60.89 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccc
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRRAFK 46 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~~~~ 46 (221)
..++++|++|||||||+++|+|...+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~ 56 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPD 56 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 678999999999999999998865543
No 354
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.16 E-value=0.00026 Score=52.36 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027618 20 RTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~ 41 (221)
..|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 355
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.16 E-value=0.00025 Score=52.43 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
..+..|+++|++|+||||+++.|.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44588999999999999999998763
No 356
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.13 E-value=0.00031 Score=51.82 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=21.4
Q ss_pred CCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 8 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 8 ~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
++.++..+ +...|+++|++||||||+.+.|...
T Consensus 16 ~~~~~~~~--~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 16 ENLYFQSN--AMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceeEecC--CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34444433 3478999999999999999998743
No 357
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.12 E-value=0.00031 Score=55.13 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=24.3
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 15 PSNGERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 15 ~~~~~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
....+..|+++|++|||||||++.|.+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34566899999999999999999987654
No 358
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.12 E-value=0.00023 Score=53.43 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~ 42 (221)
..|+++|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998754
No 359
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.09 E-value=0.00019 Score=65.05 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCccccc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~~~~ 47 (221)
+.+++++|++|+|||||++.|+|...+..
T Consensus 699 GeivaIiGpNGSGKSTLLklLaGll~P~s 727 (986)
T 2iw3_A 699 SSRIAVIGPNGAGKSTLINVLTGELLPTS 727 (986)
T ss_dssp TCEEEECSCCCHHHHHHHHHHTTSSCCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 46899999999999999999999865543
No 360
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.09 E-value=0.0003 Score=50.92 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 027618 21 TVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~ 42 (221)
..+++|++|+||||++.+|.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999998653
No 361
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.06 E-value=0.001 Score=53.73 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=44.9
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCC-------CC-CCHHHHHHHHHHHHHhcc--ccc
Q 027618 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR-------SR-FSQEEEAALHSLQTLFGK--KIF 137 (221)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-------~~-~~~~~~~~~~~l~~~~~~--~~~ 137 (221)
...+.+|||+|...+. .....+++.++++++|++++ +. -...-..+..++.+.... ...
T Consensus 182 ~v~l~iwDtaGQe~~r-----------~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~ 250 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNER-----------RKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 250 (354)
T ss_dssp --EEEEEEECCSTTGG-----------GGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS
T ss_pred ceeeEEEECCCchhhh-----------HHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC
Confidence 3578999999976532 23346788999999999986 11 111123334444443321 123
Q ss_pred ccEEEEEecCCCC
Q 027618 138 DYMIVVFTGGDEL 150 (221)
Q Consensus 138 ~~~ivv~tk~D~~ 150 (221)
.|+++|+||+|+.
T Consensus 251 ~piiLvgNK~DL~ 263 (354)
T 2xtz_A 251 TSFMLFLNKFDIF 263 (354)
T ss_dssp CEEEEEEECHHHH
T ss_pred CeEEEEEECcchh
Confidence 4899999999975
No 362
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.03 E-value=0.00086 Score=49.89 Aligned_cols=78 Identities=15% Similarity=0.098 Sum_probs=45.0
Q ss_pred CceEEEEeCCCC-CCCCCCchHHHHHHHHHHHhhcCCCcEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEe
Q 027618 68 GQVVNVIDTPGL-FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFT 145 (221)
Q Consensus 68 ~~~~~liDtPG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~t 145 (221)
...++++|||+. ... .....+..+|.+++++..+ ..+... ...++.+.+.. ..++.+|+|
T Consensus 67 ~yD~viiD~p~~~~~~-------------~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~----~~~~~vv~N 128 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE-------------DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG----NNRFRILLT 128 (209)
T ss_dssp GCSEEEEEEECCCSSS-------------HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC----SSSEEEEEC
T ss_pred cCCEEEEeCCCCcCcH-------------HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc----CCCEEEEEE
Confidence 457899999986 431 1112334568999998776 322222 44445554421 235789999
Q ss_pred cCCCCC-CChhhHHHHhcc
Q 027618 146 GGDELE-DNDETLEDYLGR 163 (221)
Q Consensus 146 k~D~~~-~~~~~~~~~l~~ 163 (221)
+.+... .....+.+++++
T Consensus 129 ~~~~~~~~~~~~~~~~l~~ 147 (209)
T 3cwq_A 129 IIPPYPSKDGDEARQLLTT 147 (209)
T ss_dssp SBCCTTSCHHHHHHHHHHH
T ss_pred ecCCccchHHHHHHHHHHH
Confidence 998654 223445555553
No 363
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.02 E-value=0.00041 Score=50.18 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~ 42 (221)
..++++|++|+|||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 67899999999999999999865
No 364
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.02 E-value=0.0003 Score=51.93 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027618 20 RTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~ 41 (221)
.+|+++|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 365
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.02 E-value=0.00026 Score=58.81 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCccc
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAF 45 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~ 45 (221)
.++-+++++|++|+|||||++.|+|...+
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 44578999999999999999999987643
No 366
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.02 E-value=0.00026 Score=56.36 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
...++++|++|||||||+|.|++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4678999999999999999999764
No 367
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.00 E-value=0.00034 Score=62.32 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=30.5
Q ss_pred CCCCCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
+..+.++.++. .++..++++|++|+||||+++.+.+..
T Consensus 594 ~~~vlndisl~---~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 594 EPFIANPLNLS---PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SCCCCEEEEEC---SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred Cceeeeccccc---CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 45567777776 345789999999999999999988754
No 368
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.99 E-value=0.00058 Score=50.60 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
..+..|++.|.+||||||+.+.|..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999999864
No 369
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.98 E-value=0.0073 Score=47.97 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
+...|+|.|++|+|||++++++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 4478999999999999999999854
No 370
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.97 E-value=0.00047 Score=49.19 Aligned_cols=20 Identities=25% Similarity=0.579 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 027618 20 RTVVLVGRTGNGKSATGNSI 39 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l 39 (221)
..|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999998
No 371
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.97 E-value=0.00031 Score=54.64 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 027618 22 VVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 22 i~l~G~~g~GKSslin~l~~~ 42 (221)
++++|++|+|||||+++|++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999875
No 372
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.96 E-value=0.00054 Score=49.28 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027618 20 RTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~ 41 (221)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5689999999999999999875
No 373
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.96 E-value=0.00062 Score=47.91 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSIL 40 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~ 40 (221)
...+++|++|+||||++.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999975
No 374
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.95 E-value=0.0005 Score=49.06 Aligned_cols=22 Identities=18% Similarity=0.145 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027618 20 RTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~ 41 (221)
..|++.|++||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 375
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.94 E-value=0.0049 Score=54.89 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=45.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (221)
.+++-|+|.||+|+|||+|.+++++... ..++.++.+.+.... ..+....++..
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg------------------------~~~~~v~~~~l~sk~--~gese~~lr~l 289 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETG------------------------AFFFLINGPEIMSKL--AGESESNLRKA 289 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTT------------------------CEEEEEEHHHHHSSC--TTHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhC------------------------CeEEEEEhHHhhccc--chHHHHHHHHH
Confidence 4457899999999999999999986531 122344544433211 11223445555
Q ss_pred HHhhcCCCcEEEEEEeCC
Q 027618 97 IGMAKDGIHAVLVVFSVR 114 (221)
Q Consensus 97 ~~~~~~~~~~il~v~~~~ 114 (221)
+..+.....+|||+-+++
T Consensus 290 F~~A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 290 FEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp HHHHTTSCSEEEEEESGG
T ss_pred HHHHHHcCCeEEEEehhc
Confidence 555555667888887765
No 376
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.94 E-value=0.00044 Score=51.87 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
++..++++|++|+|||||++.|++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467899999999999999998854
No 377
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.93 E-value=0.00045 Score=50.97 Aligned_cols=24 Identities=33% Similarity=0.648 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
...|+++|++||||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999988643
No 378
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.93 E-value=0.0072 Score=47.13 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
...+++.|++|+|||++++++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 478999999999999999999764
No 379
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.92 E-value=0.00037 Score=65.52 Aligned_cols=31 Identities=26% Similarity=0.202 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++.+|+++|++|||||||++.|++...+..+
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G 1134 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYDTLGG 1134 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSCCSSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCccCCCC
Confidence 3579999999999999999999998665443
No 380
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.90 E-value=0.00062 Score=55.22 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 027618 21 TVVLVGRTGNGKSATGNSIL 40 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~ 40 (221)
..+++|+|||||||++++|+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56799999999999999987
No 381
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.90 E-value=0.00062 Score=49.35 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHh
Q 027618 19 ERTVVLVGRTGNGKSATGNSIL 40 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~ 40 (221)
+..|+++|++||||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999986
No 382
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.89 E-value=0.00066 Score=48.85 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027618 20 RTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~ 41 (221)
..|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999865
No 383
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.87 E-value=0.00075 Score=52.85 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=22.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
...+..|++.|++||||||+.+.|..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999999864
No 384
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.86 E-value=0.00061 Score=63.91 Aligned_cols=31 Identities=32% Similarity=0.295 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++.+++++|++|||||||++.|+|...+..+
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G 445 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLYDPLDG 445 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 3478999999999999999999998765433
No 385
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.85 E-value=0.00046 Score=52.81 Aligned_cols=21 Identities=38% Similarity=0.680 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 027618 22 VVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 22 i~l~G~~g~GKSslin~l~~~ 42 (221)
++++|++|+|||||+++|++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999865
No 386
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.85 E-value=0.0008 Score=49.41 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=22.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
......|+++|++||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 344578999999999999999998754
No 387
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.85 E-value=0.00056 Score=53.66 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRA 44 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~ 44 (221)
.++..++++|++|+|||||++.|++...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3457889999999999999999876543
No 388
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.84 E-value=0.00093 Score=48.56 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
....|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999999988654
No 389
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.84 E-value=0.001 Score=48.98 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=21.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
......|++.|.+||||||+.+.|..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44557899999999999999988863
No 390
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.84 E-value=0.00079 Score=48.41 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
...++++|++|+|||||++.|+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998754
No 391
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.83 E-value=0.00053 Score=60.78 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=28.1
Q ss_pred CCCCCCcccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
..+.++.++. +..++++|++|+||||+++.+.+..
T Consensus 566 ~~vl~disl~-----g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 566 EFVPNDLEMA-----HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CCCCEEEEES-----SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEeeeccCC-----CcEEEEECCCCCChHHHHHHHHhhh
Confidence 3455666665 5789999999999999999998764
No 392
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.82 E-value=0.00085 Score=48.85 Aligned_cols=23 Identities=13% Similarity=0.395 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~ 41 (221)
+..|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999863
No 393
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.82 E-value=0.0011 Score=48.09 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
..+..|+++|.+|+||||+.+.|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998754
No 394
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.82 E-value=0.00083 Score=50.23 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
++..|+|+|++||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988854
No 395
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.81 E-value=0.00073 Score=63.56 Aligned_cols=31 Identities=32% Similarity=0.352 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++..++++|++|+|||||++.|+|...+..+
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~~~~G 473 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYDVLKG 473 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSCCSEE
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccccccC
Confidence 3478999999999999999999998765444
No 396
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.81 E-value=0.0008 Score=48.84 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027618 20 RTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~ 41 (221)
..|++.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 397
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.79 E-value=6.2e-05 Score=56.95 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccc
Q 027618 21 TVVLVGRTGNGKSATGNSILGRRAFK 46 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~~~~~ 46 (221)
.++++|++|||||||+++|++...+.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~ 54 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPD 54 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcccccC
Confidence 45789999999999999999876543
No 398
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.77 E-value=0.00089 Score=48.49 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~ 41 (221)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999853
No 399
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.77 E-value=0.001 Score=48.00 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
++..|+++|.+||||||+.+.|.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998764
No 400
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.76 E-value=0.00063 Score=54.41 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
..++++|++|+|||||++.|++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 568999999999999999998764
No 401
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.74 E-value=0.00067 Score=61.49 Aligned_cols=25 Identities=28% Similarity=0.326 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
++.+++++|++|+|||||++.|+|.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468899999999999999999953
No 402
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.72 E-value=0.0077 Score=49.07 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
...|+|.|++|+|||+++.+|+..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999999999643
No 403
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.71 E-value=0.00082 Score=54.68 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
++..++++|++|+|||||++.|++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999999864
No 404
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.71 E-value=0.0011 Score=48.25 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
.+..|++.|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998853
No 405
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.70 E-value=0.00069 Score=52.62 Aligned_cols=21 Identities=38% Similarity=0.680 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 027618 22 VVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 22 i~l~G~~g~GKSslin~l~~~ 42 (221)
++++|++|+|||||+++|++.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999865
No 406
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.70 E-value=0.0012 Score=48.45 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
+..|++.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998754
No 407
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.69 E-value=0.0012 Score=48.06 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~ 41 (221)
+..|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988753
No 408
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.68 E-value=0.0014 Score=48.12 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
..+..|+++|++|+||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999998853
No 409
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.68 E-value=0.00096 Score=49.60 Aligned_cols=24 Identities=13% Similarity=-0.031 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
++..++++|++|+|||||+..+++
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999999986
No 410
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.68 E-value=0.0011 Score=48.68 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 027618 21 TVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~ 42 (221)
.|++.|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999998753
No 411
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.68 E-value=0.0013 Score=48.59 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~ 41 (221)
+..|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 412
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.67 E-value=0.0011 Score=62.23 Aligned_cols=31 Identities=26% Similarity=0.223 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR 48 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~~~~~~ 48 (221)
++.+++++|++|+|||||++.|+|...+..+
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G 1088 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 4578999999999999999999998765443
No 413
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.67 E-value=0.0011 Score=48.13 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~ 42 (221)
..|++.|++||||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998653
No 414
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.67 E-value=0.00092 Score=50.50 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
++..++++|++|+|||||+..|++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4468899999999999999999874
No 415
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.66 E-value=0.0054 Score=49.09 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 027618 22 VVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 22 i~l~G~~g~GKSslin~l~~~ 42 (221)
+++.|++|+||||+++.|++.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998873
No 416
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.65 E-value=0.0014 Score=49.95 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
.++.+|+++|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3568899999999999999998863
No 417
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.63 E-value=0.00029 Score=57.97 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=19.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
++ .++|+|+||+|||||+++|.+
T Consensus 60 ~G-~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 60 GG-FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp SS-EEEEEESHHHHHHHHTHHHHH
T ss_pred CC-cEEEECCCCCCHHHHHHHHHH
Confidence 44 889999999999999988743
No 418
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.62 E-value=0.019 Score=42.11 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 027618 21 TVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~ 42 (221)
.+++.|++|+|||+++..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998754
No 419
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.62 E-value=0.0012 Score=49.05 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 027618 21 TVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~ 41 (221)
+|+++|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 420
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.61 E-value=0.0012 Score=47.59 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHh
Q 027618 19 ERTVVLVGRTGNGKSATGNSIL 40 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~ 40 (221)
...|+++|.+|+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4678999999999999999886
No 421
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.60 E-value=0.012 Score=45.33 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
....+++.|++|+|||+++.++...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4478899999999999999998754
No 422
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.59 E-value=0.001 Score=50.95 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 16 SNGERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 16 ~~~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
...+..|+++|++||||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44557899999999999999999864
No 423
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.59 E-value=0.0015 Score=48.38 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
.+..|++.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999864
No 424
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.58 E-value=0.00095 Score=51.19 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~ 41 (221)
+..|+++|++|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 425
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.58 E-value=0.0016 Score=48.48 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~ 41 (221)
+..|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 426
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.57 E-value=0.0014 Score=48.79 Aligned_cols=21 Identities=38% Similarity=0.718 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 027618 21 TVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~ 41 (221)
+|+++|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 427
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.56 E-value=0.0017 Score=48.04 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSIL 40 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~ 40 (221)
...+++|++|+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 466889999999999999874
No 428
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.55 E-value=0.0015 Score=49.13 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHh
Q 027618 19 ERTVVLVGRTGNGKSATGNSIL 40 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~ 40 (221)
...|+++|++||||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999886
No 429
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.53 E-value=0.0014 Score=48.98 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~ 41 (221)
+..|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998853
No 430
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.53 E-value=0.0023 Score=47.90 Aligned_cols=25 Identities=16% Similarity=0.504 Sum_probs=20.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
..+.|+++|++||||+|....|+..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3456778999999999999888643
No 431
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.52 E-value=0.0016 Score=47.55 Aligned_cols=23 Identities=17% Similarity=0.508 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~ 41 (221)
+..|++.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999988854
No 432
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.52 E-value=0.0022 Score=46.54 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~ 41 (221)
...|++.|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998853
No 433
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.50 E-value=0.0017 Score=49.83 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027618 20 RTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~ 41 (221)
..|+++|++||||||+.+.|..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3688999999999999998864
No 434
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.50 E-value=0.0045 Score=49.43 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
..|+|+|++|+|||||...|....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 578999999999999999987654
No 435
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.49 E-value=0.02 Score=48.04 Aligned_cols=23 Identities=30% Similarity=0.673 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~ 42 (221)
.-|+|+|++|+|||+|++++.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999874
No 436
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.49 E-value=0.0015 Score=46.97 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 027618 21 TVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~ 41 (221)
.|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 437
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.45 E-value=0.0039 Score=48.60 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHh
Q 027618 17 NGERTVVLVGRTGNGKSATGNSIL 40 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~ 40 (221)
.....|++.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 445789999999999999999886
No 438
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.44 E-value=0.002 Score=51.57 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027618 20 RTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~ 41 (221)
...+++|++|+||||++.+|+.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999743
No 439
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.44 E-value=0.0014 Score=50.86 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
.++..++++|++|+|||||+..+++
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3557899999999999999998876
No 440
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.44 E-value=0.001 Score=58.25 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHh
Q 027618 19 ERTVVLVGRTGNGKSATGNSIL 40 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~ 40 (221)
+..++++|++|||||||++.|+
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTTH
T ss_pred CCEEEEEeeCCCCHHHHHHHHH
Confidence 4688999999999999998764
No 441
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.44 E-value=0.0023 Score=46.05 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
...+++.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998754
No 442
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.44 E-value=0.0017 Score=49.65 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~ 42 (221)
..++++|++|+|||+++++|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 443
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.43 E-value=0.0023 Score=47.51 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
.+..|+++|.+|+||||+.+.|.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999998754
No 444
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.41 E-value=0.0025 Score=48.13 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
..+..|++.|++||||||+++.|...
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 35688999999999999999998754
No 445
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.40 E-value=0.0022 Score=49.00 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=20.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
.....|++.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999988854
No 446
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.40 E-value=0.00078 Score=49.93 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 027618 21 TVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~ 42 (221)
.|++.|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 447
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.37 E-value=0.0024 Score=48.42 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHh
Q 027618 19 ERTVVLVGRTGNGKSATGNSIL 40 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~ 40 (221)
+..|++.|++|+||||+.+.|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999986
No 448
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.37 E-value=0.0025 Score=49.02 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~ 41 (221)
...|+++|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 449
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.36 E-value=0.0018 Score=53.60 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~~~ 44 (221)
+..++++|++|+|||||+++|++...
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 46789999999999999999876443
No 450
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.34 E-value=0.0025 Score=45.28 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 027618 21 TVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~ 41 (221)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 451
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.34 E-value=0.0024 Score=46.58 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 027618 21 TVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~ 41 (221)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 452
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.34 E-value=0.0021 Score=58.80 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=28.9
Q ss_pred CCCCCCcccCCCC-----CCCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618 4 SAIDDDWELTSPS-----NGERTVVLVGRTGNGKSATGNSILGRRA 44 (221)
Q Consensus 4 ~~~~~~~~~~~~~-----~~~~~i~l~G~~g~GKSslin~l~~~~~ 44 (221)
..+.++.++.... ..+..++++||+|+||||+++.+ |...
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 4456666664432 23578999999999999999998 6543
No 453
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.33 E-value=0.002 Score=46.57 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027618 20 RTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~ 41 (221)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999988753
No 454
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.33 E-value=0.0018 Score=52.30 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 027618 21 TVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~ 41 (221)
..+++|++|+||||++++|.+
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 789999999999999999874
No 455
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.33 E-value=0.0024 Score=47.45 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 027618 21 TVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~~ 42 (221)
+|+++|+|||||+|....|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999888643
No 456
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.32 E-value=0.0023 Score=47.59 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 027618 21 TVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~ 41 (221)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 457
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.31 E-value=0.0018 Score=46.71 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=16.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~ 41 (221)
+..|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999853
No 458
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.30 E-value=0.0012 Score=56.36 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCcc
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRRA 44 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~~ 44 (221)
.++..|+|+|++|||||||+++|.+...
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 3557899999999999999999987643
No 459
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.29 E-value=0.0023 Score=45.66 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027618 20 RTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~ 41 (221)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988853
No 460
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.29 E-value=0.0031 Score=47.60 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
.....|+|+|.+|+||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998854
No 461
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.29 E-value=0.003 Score=47.76 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
..+..|+++|++|+||||+.+.|.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998864
No 462
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.29 E-value=0.0026 Score=46.20 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 027618 21 TVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~ 41 (221)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 463
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.24 E-value=0.0023 Score=51.56 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
++..+.++|++|+|||||+..+++..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45788999999999999999998754
No 464
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.23 E-value=0.0023 Score=50.84 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 027618 21 TVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~ 41 (221)
..+++|++|+|||||+.+|..
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHHH
Confidence 778999999999999999873
No 465
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.23 E-value=0.0031 Score=47.30 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
....+++.|++|+|||+++..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998754
No 466
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.23 E-value=0.0031 Score=46.29 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
..+++.|++|+|||+|+.+++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999987543
No 467
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.22 E-value=0.0043 Score=48.65 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
.+...++++|++|+|||+++++|.+..
T Consensus 45 ~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 45 RPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 334579999999999999999987653
No 468
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.20 E-value=0.0022 Score=54.57 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATGNSI 39 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l 39 (221)
++..++++|++|||||||++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4578999999999999999994
No 469
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.20 E-value=0.0095 Score=53.67 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 20 RTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
..++|+|++|+|||+++..++...
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 457999999999999999988654
No 470
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.19 E-value=0.0031 Score=47.27 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 027618 21 TVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~ 41 (221)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 471
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.18 E-value=0.003 Score=47.09 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027618 20 RTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~ 41 (221)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998853
No 472
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.15 E-value=0.0041 Score=45.80 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
+..|+++|++|+|||+|...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999888754
No 473
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.13 E-value=0.0045 Score=48.82 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
+..|+++||||+|||||...|...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 467889999999999999888643
No 474
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.12 E-value=0.011 Score=52.50 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
...++|+|++|+|||+++..+...
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 467899999999999999998764
No 475
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.12 E-value=0.0029 Score=45.35 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
...+++.|++|+|||+++..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999988654
No 476
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.10 E-value=0.0057 Score=47.92 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
.+..+++.|++|+|||++..+|+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3466778899999999999998754
No 477
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.09 E-value=0.0038 Score=45.79 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
....|+++|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988753
No 478
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.09 E-value=0.004 Score=48.95 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
....|++.|++|+|||+++++|.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 3467999999999999999999764
No 479
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.07 E-value=0.0044 Score=48.96 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
...|+++||||+|||||...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 357889999999999999988644
No 480
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.06 E-value=0.0042 Score=44.17 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027618 20 RTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~ 41 (221)
..|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999988753
No 481
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.03 E-value=0.0023 Score=50.11 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=17.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
....|++.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999988764
No 482
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.00 E-value=0.0054 Score=48.08 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
.....++|.|++|+|||++++++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999887654
No 483
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.97 E-value=0.0035 Score=54.94 Aligned_cols=19 Identities=42% Similarity=0.634 Sum_probs=17.0
Q ss_pred CCeEEEEEcCCCCCHHHHH
Q 027618 18 GERTVVLVGRTGNGKSATG 36 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSsli 36 (221)
++..++++|++|||||||+
T Consensus 43 ~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 43 RGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TTSEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHh
Confidence 3478999999999999996
No 484
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.96 E-value=0.0048 Score=50.05 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 027618 20 RTVVLVGRTGNGKSATGNSIL 40 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~ 40 (221)
...+++|+||+||||++.+|.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 566899999999999999874
No 485
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.95 E-value=0.0049 Score=48.21 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 027618 20 RTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~ 41 (221)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999874
No 486
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.94 E-value=0.0064 Score=50.14 Aligned_cols=26 Identities=35% Similarity=0.300 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 17 ~~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
.....|+++|.+||||||+.+.|...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34578899999999999999998753
No 487
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.93 E-value=0.19 Score=41.79 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~ 42 (221)
..++|.|++|+||||+++.|...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 47899999999999999999754
No 488
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.92 E-value=0.0052 Score=46.36 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=19.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHh
Q 027618 18 GERTVVLVGRTGNGKSATGNSIL 40 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~ 40 (221)
++..++++|++|+|||||+..++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999976654
No 489
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.89 E-value=0.004 Score=53.19 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
++..++++|++|+|||||+++|.+..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999987654
No 490
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.86 E-value=0.0057 Score=48.56 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~ 42 (221)
..|+++|++|+||||+...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999888643
No 491
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.85 E-value=0.0056 Score=44.97 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 027618 21 TVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 21 ~i~l~G~~g~GKSslin~l~~ 41 (221)
.|++.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998854
No 492
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.84 E-value=0.0056 Score=48.97 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~ 42 (221)
..|+++|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 57899999999999999887643
No 493
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.81 E-value=0.006 Score=49.86 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=19.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~ 41 (221)
...|++.|+||+|||||...|..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHH
Confidence 36789999999999999988764
No 494
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.80 E-value=0.0061 Score=42.36 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~ 42 (221)
..|++.|++|+|||++..+|...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999998754
No 495
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.78 E-value=0.0065 Score=46.09 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=22.0
Q ss_pred ccCCCCCCCeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 11 ~~~~~~~~~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
.+..+...+..|++.|.+|+||||+++.|...
T Consensus 19 ~~~~~~~~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 19 YFQSNAMNAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp -------CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred ccccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44555556788999999999999999998643
No 496
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.70 E-value=0.038 Score=46.49 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhCC
Q 027618 19 ERTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 19 ~~~i~l~G~~g~GKSslin~l~~~ 42 (221)
...|+|.|++|+|||+++++|...
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHH
Confidence 357999999999999999999643
No 497
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.64 E-value=0.0076 Score=44.89 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~ 42 (221)
..+++.|++|+|||+++..+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988654
No 498
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.63 E-value=0.0071 Score=48.66 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhCCc
Q 027618 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~~~ 43 (221)
....+++.|++|+|||||++.+++..
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34678999999999999999988643
No 499
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.61 E-value=0.0061 Score=45.13 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 027618 20 RTVVLVGRTGNGKSATGNSILGR 42 (221)
Q Consensus 20 ~~i~l~G~~g~GKSslin~l~~~ 42 (221)
..+++.||+|+||||++.+|+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998887653
No 500
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.61 E-value=0.0092 Score=44.48 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhC
Q 027618 18 GERTVVLVGRTGNGKSATGNSILG 41 (221)
Q Consensus 18 ~~~~i~l~G~~g~GKSslin~l~~ 41 (221)
.+..|++.|+.||||||+++.|..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
Done!