BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027619
         (221 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GM6|A Chain A, Crystal Structure Of A Putative Cysteine Dioxygenase Type
           I (reut_b5045) From Ralstonia Eutropha Jmp134 At 1.84 A
           Resolution
          Length = 208

 Score = 28.9 bits (63), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 13/78 (16%)

Query: 121 DKAGQEVLKNVFS-----AAEAVEEFIGIIMNIKMEFDDEIGLSVYQRYATYLDAFGPDE 175
           D +G+ VL    +       EAV   +G I  +   +DD + +S++         +G + 
Sbjct: 118 DGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDDRVSISIH--------VYGANI 169

Query: 176 SYLRKKVETELGSKMIFL 193
             +R+ V TE G +  F+
Sbjct: 170 GGVRRSVYTEAGERKPFI 187


>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
           Deoxygluconate Kinase
 pdb|2V78|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
           Deoxygluconate Kinase
 pdb|2V78|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
           Deoxygluconate Kinase
 pdb|2VAR|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
           Deoxygluconate Kinase Complexed With 2-Keto-3-
           Deoxygluconate
 pdb|2VAR|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
           Deoxygluconate Kinase Complexed With 2-Keto-3-
           Deoxygluconate
 pdb|2VAR|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
           Deoxygluconate Kinase Complexed With 2-Keto-3-
           Deoxygluconate
          Length = 313

 Score = 28.5 bits (62), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 145 IMNIKMEFDDEIGLSVYQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAG 199
           I++I  ++D E+ ++        LD   PDE+Y + K   ELG K++  K+   G
Sbjct: 180 ILSILKKYDIEVLITDPDDTKILLDVTDPDEAYRKYK---ELGVKVLLYKLGSKG 231


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,127,573
Number of Sequences: 62578
Number of extensions: 183939
Number of successful extensions: 501
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 501
Number of HSP's gapped (non-prelim): 4
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)