Query 027619
Match_columns 221
No_of_seqs 17 out of 19
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 12:40:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027619.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027619hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14290 DUF4370: Domain of un 100.0 3E-111 7E-116 727.0 18.9 216 1-220 1-235 (239)
2 PLN02749 Uncharacterized prote 100.0 1.3E-96 3E-101 614.1 14.6 152 69-220 1-169 (173)
3 PRK08230 tartrate dehydratase 75.9 6.3 0.00014 36.4 5.5 53 87-140 9-61 (299)
4 PF00268 Ribonuc_red_sm: Ribon 73.2 59 0.0013 27.9 10.4 95 79-176 10-117 (281)
5 PRK00411 cdc6 cell division co 72.6 60 0.0013 28.2 10.4 39 73-111 197-237 (394)
6 PF04328 DUF466: Protein of un 69.1 5.6 0.00012 29.0 2.9 43 145-187 9-57 (65)
7 PRK10702 endonuclease III; Pro 68.2 6.3 0.00014 33.6 3.5 74 83-159 42-118 (211)
8 PF06798 PrkA: PrkA serine pro 64.3 16 0.00036 32.3 5.4 50 138-188 83-162 (254)
9 PRK07539 NADH dehydrogenase su 63.7 23 0.00051 28.5 5.8 97 107-216 6-123 (154)
10 COG1951 TtdA Tartrate dehydrat 63.3 20 0.00044 33.3 6.0 55 86-141 8-62 (297)
11 PRK06246 fumarate hydratase; P 63.2 18 0.00038 33.0 5.5 59 81-140 2-60 (280)
12 TIGR01478 STEVOR variant surfa 60.0 12 0.00026 34.9 3.9 47 71-117 41-99 (295)
13 PF02436 PYC_OADA: Conserved c 56.2 13 0.00027 32.0 3.2 89 85-174 56-164 (196)
14 PF05681 Fumerase: Fumarate hy 55.9 22 0.00049 32.1 4.8 51 89-140 2-52 (271)
15 PF00101 RuBisCO_small: Ribulo 52.5 12 0.00026 29.4 2.2 46 75-120 3-74 (99)
16 PTZ00370 STEVOR; Provisional 50.4 21 0.00045 33.4 3.8 54 69-122 39-103 (296)
17 PRK10880 adenine DNA glycosyla 49.8 25 0.00055 32.5 4.3 72 84-159 44-118 (350)
18 cd03527 RuBisCO_small Ribulose 49.3 18 0.0004 28.5 2.9 26 75-100 4-29 (99)
19 COG4423 Uncharacterized protei 48.9 41 0.0009 26.2 4.7 48 82-129 4-52 (81)
20 COG1107 Archaea-specific RecJ- 45.6 37 0.00079 35.0 5.0 103 86-197 493-601 (715)
21 PF02861 Clp_N: Clp amino term 44.1 23 0.0005 22.4 2.3 23 165-187 31-53 (53)
22 PF11841 DUF3361: Domain of un 43.9 80 0.0017 26.9 6.0 57 88-144 37-97 (160)
23 TIGR00722 ttdA_fumA_fumB hydro 43.5 45 0.00097 30.4 4.8 51 89-140 2-52 (273)
24 PRK15389 fumarate hydratase; P 43.2 48 0.001 33.1 5.3 74 67-140 18-98 (536)
25 cd07119 ALDH_BADH-GbsA Bacillu 42.8 41 0.00089 30.9 4.5 50 75-124 24-81 (482)
26 PRK07571 bidirectional hydroge 42.6 1.3E+02 0.0028 25.3 7.1 102 102-216 15-137 (169)
27 TIGR01083 nth endonuclease III 40.1 57 0.0012 26.8 4.5 75 82-159 38-115 (191)
28 TIGR01084 mutY A/G-specific ad 39.5 46 0.001 29.7 4.2 71 83-159 39-114 (275)
29 TIGR03688 pupylate_PafA2 prote 35.6 8.1 0.00018 37.9 -1.2 72 68-179 87-160 (485)
30 PRK06310 DNA polymerase III su 35.5 58 0.0013 28.1 4.1 89 99-201 130-239 (250)
31 PF04703 FaeA: FaeA-like prote 35.4 42 0.0009 24.3 2.7 22 151-172 20-43 (62)
32 TIGR01408 Ube1 ubiquitin-activ 34.4 56 0.0012 34.3 4.5 13 205-217 420-432 (1008)
33 COG3215 PilZ Tfp pilus assembl 34.0 25 0.00054 29.2 1.5 20 170-189 86-107 (117)
34 PRK05472 redox-sensing transcr 32.8 54 0.0012 27.1 3.3 53 152-217 38-97 (213)
35 TIGR03686 pupylate_PafA protea 32.7 11 0.00024 36.7 -0.8 75 69-179 49-126 (453)
36 PF15062 ARL6IP6: Haemopoietic 32.4 10 0.00022 29.9 -0.9 29 140-174 22-52 (85)
37 KOG4548 Mitochondrial ribosoma 31.1 86 0.0019 29.0 4.6 109 77-204 34-154 (263)
38 PRK06041 flagellar assembly pr 30.6 98 0.0021 30.2 5.1 27 160-186 146-172 (553)
39 PF07849 DUF1641: Protein of u 30.6 42 0.00092 22.4 1.9 16 82-97 19-34 (42)
40 PF02074 Peptidase_M32: Carbox 29.9 1.4E+02 0.003 29.2 6.0 64 102-176 97-166 (494)
41 PLN02289 ribulose-bisphosphate 29.9 44 0.00095 29.3 2.4 31 70-101 64-94 (176)
42 PF10152 DUF2360: Predicted co 29.5 34 0.00073 27.9 1.6 31 160-204 115-145 (148)
43 PRK15338 type III secretion sy 27.6 2E+02 0.0042 27.8 6.4 89 84-175 121-215 (372)
44 PRK11241 gabD succinate-semial 27.6 86 0.0019 29.5 4.1 50 75-124 37-92 (482)
45 PRK09847 gamma-glutamyl-gamma- 27.4 1.8E+02 0.0039 27.4 6.1 49 75-123 46-102 (494)
46 KOG2120 SCF ubiquitin ligase, 26.9 78 0.0017 30.9 3.7 37 97-144 95-131 (419)
47 cd00056 ENDO3c endonuclease II 26.3 1.6E+02 0.0034 22.7 4.7 98 83-184 13-121 (158)
48 TIGR00270 conserved hypothetic 26.1 1.4E+02 0.0031 24.6 4.7 55 136-193 65-128 (154)
49 PF10191 COG7: Golgi complex c 25.5 1.6E+02 0.0035 29.8 5.7 81 91-175 279-367 (766)
50 PF01579 DUF19: Domain of unkn 25.5 46 0.00099 24.8 1.6 40 130-169 107-146 (160)
51 PTZ00171 acyl carrier protein; 25.4 2.9E+02 0.0063 22.8 6.3 81 78-169 61-141 (148)
52 cd07149 ALDH_y4uC Uncharacteri 24.5 1.3E+02 0.0027 27.2 4.4 45 77-121 12-62 (453)
53 TIGR01237 D1pyr5carbox2 delta- 24.1 1.2E+02 0.0025 28.6 4.3 48 76-123 59-112 (511)
54 COG2766 PrkA Putative Ser prot 24.1 1.2E+02 0.0026 31.2 4.6 27 160-187 505-548 (649)
55 PLN02466 aldehyde dehydrogenas 24.0 4.5E+02 0.0098 25.3 8.2 49 75-123 84-140 (538)
56 TIGR01600 phage_tail_L lambda- 23.8 21 0.00046 32.1 -0.6 31 140-170 73-105 (225)
57 PF03789 ELK: ELK domain ; In 23.7 59 0.0013 19.9 1.5 15 138-152 7-21 (22)
58 TIGR01958 nuoE_fam NADH-quinon 23.5 1.7E+02 0.0037 23.4 4.6 84 123-216 13-117 (148)
59 PF05480 Staph_haemo: Staphylo 23.3 59 0.0013 22.8 1.7 29 87-115 7-35 (43)
60 PTZ00226 fumarate hydratase; P 23.2 1.9E+02 0.004 29.4 5.7 65 76-140 64-128 (570)
61 PF01077 NIR_SIR: Nitrite and 22.8 33 0.00072 26.6 0.4 27 162-190 131-157 (157)
62 cd07141 ALDH_F1AB_F2_RALDH1 NA 22.8 2.5E+02 0.0054 26.0 6.1 49 75-123 33-90 (481)
63 KOG0034 Ca2+/calmodulin-depend 22.7 80 0.0017 27.0 2.7 48 83-130 121-168 (187)
64 PF03810 IBN_N: Importin-beta 22.3 96 0.0021 20.7 2.5 25 91-115 39-71 (77)
65 PF13863 DUF4200: Domain of un 22.1 3.2E+02 0.0069 20.5 5.6 79 93-173 27-119 (126)
66 PF05266 DUF724: Protein of un 22.1 2.4E+02 0.0052 24.1 5.5 100 92-196 40-146 (190)
67 PF12767 SAGA-Tad1: Transcript 21.9 76 0.0016 27.3 2.4 27 145-171 11-37 (252)
68 PRK07942 DNA polymerase III su 21.8 1.7E+02 0.0037 24.8 4.5 51 124-174 159-216 (232)
69 PRK00488 pheS phenylalanyl-tRN 21.6 2.7E+02 0.0059 26.2 6.1 96 106-218 7-106 (339)
70 PF05960 DUF885: Bacterial pro 21.5 5.2E+02 0.011 23.9 7.8 82 122-206 177-275 (549)
71 PF07528 DZF: DZF domain; Int 21.4 1.4E+02 0.0029 26.6 3.9 75 58-135 106-185 (248)
72 PF03087 DUF241: Arabidopsis p 21.4 5.4E+02 0.012 22.2 9.3 91 87-196 8-105 (231)
73 PF12974 Phosphonate-bd: ABC t 21.0 1.3E+02 0.0029 24.3 3.5 31 101-131 200-230 (243)
74 PF03136 Pup_ligase: Pup-ligas 20.9 34 0.00074 33.2 0.1 75 68-179 71-146 (444)
75 PRK13910 DNA glycosylase MutY; 20.6 1.5E+02 0.0032 26.9 4.1 65 91-159 14-81 (289)
76 PRK10512 selenocysteinyl-tRNA- 20.4 5.9E+02 0.013 25.2 8.4 67 103-172 505-594 (614)
77 PF09957 DUF2191: Uncharacteri 20.2 2.3E+02 0.005 19.3 4.0 32 102-133 6-37 (47)
78 PF13852 DUF4197: Protein of u 20.1 5E+02 0.011 22.6 7.0 93 103-207 44-145 (202)
No 1
>PF14290 DUF4370: Domain of unknown function (DUF4370)
Probab=100.00 E-value=3.2e-111 Score=727.05 Aligned_cols=216 Identities=62% Similarity=0.973 Sum_probs=205.5
Q ss_pred CchhhhHHHHHHHHHHhhhhhhHHHh--hhhhhhhhhccccccccCCCCCCCCCCCCCCCcCCcccccccccccccccCC
Q 027619 1 MEKIAVMSVRSIRRAACVRSSIIAAA--NNHHLRHLSSSRSLFSLSSPAASIPSKSIPFDCRSSLVMSIGCNRSFSEDVA 78 (221)
Q Consensus 1 mek~~m~~lrs~~r~a~~~s~~~~~~--~~~~~~h~s~~~sl~t~~~~~~~~ps~~~~~d~~~~~s~~~~~~R~fS~d~~ 78 (221)
||| ||+.||++||++|++|++.++. .+|+++|..+.+++++++++.+ +. ++++||++||++|||++|+||+|++
T Consensus 1 m~~-~~~~lr~~~R~~~~~s~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~--~~-~~~s~~~~~~a~s~~~~R~fS~d~~ 76 (239)
T PF14290_consen 1 MEK-AMSALRSLLRSAALRSSRSSSASRSHHQIRHHLSSRSLFTLSSPSS--RN-RISSDCGGPFAMSWGSRRFFSEDVS 76 (239)
T ss_pred Cch-HHHHHHHHHHHHHHHHhhhhhhhcchhhhhhhhhhccccCCCCccc--cc-cccccccCCcccccchhhhcccccc
Confidence 887 5999999999999999987555 3377788558999999988873 33 8899999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccch
Q 027619 79 HMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGL 158 (221)
Q Consensus 79 hlP~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgGiL~~LrmeiDDl~Gl 158 (221)
|||+|+||||++|||||||+||+|||++||++|||||||||||+||||||+||||||||||||||+|++|||||||||||
T Consensus 77 hlP~i~Dp~i~~afKdLmAasW~elp~svv~~akkalSk~tdD~AGqeaL~nvfRAAeAvEeFgG~L~tLrm~idDl~Gl 156 (239)
T PF14290_consen 77 HLPAISDPEIEKAFKDLMAASWDELPDSVVNEAKKALSKNTDDKAGQEALKNVFRAAEAVEEFGGILVTLRMEIDDLCGL 156 (239)
T ss_pred cCCCCCCHHHHHHHHHHHhcchhhCCHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-----------------HHHHHHHHHhhcCCChhHHHHHHHHhhhhhhhhhhhhhcCCCCCcceeEEeeccccccccc
Q 027619 159 S-----------------VYQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVFYYGCQCHCGILA 220 (221)
Q Consensus 159 s-----------------~y~rY~~YLdsFgpdE~yLrKKVE~ELGtkmI~LKmRcsGlgseWGKVtllGTSg~sgsy~ 220 (221)
| +|+||++|||||||||+|||||||+|||+|||||||||||||||||||||||||||||||.
T Consensus 157 sGEnv~PLP~~~~~Al~t~y~rY~~YL~sFgp~E~yLrKKVE~ELGtkmi~lKmRcsGlg~eWgkvtllGTSGlsGSYv 235 (239)
T PF14290_consen 157 SGENVKPLPDYIENALRTAYKRYMTYLDSFGPDEHYLRKKVEMELGTKMIHLKMRCSGLGSEWGKVTLLGTSGLSGSYV 235 (239)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhhhHHHHhhhhcCCCcccceeeEeecCcCccchh
Confidence 9 9999999999999999999999999999999999999999999999999999999999995
No 2
>PLN02749 Uncharacterized protein At1g47420
Probab=100.00 E-value=1.3e-96 Score=614.05 Aligned_cols=152 Identities=68% Similarity=1.082 Sum_probs=150.6
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027619 69 CNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNI 148 (221)
Q Consensus 69 ~~R~fS~d~~hlP~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgGiL~~L 148 (221)
++|+||+|++|||+|+||+|++|||||||+||+|||++|+++||+||||||||+||||||+||||||||||||||+|++|
T Consensus 1 ~~R~fs~d~~~lP~i~Dp~i~~afkdLma~sW~elp~sv~~~~kkalsk~tddkagqeaL~nvfrAAeAveeFgG~L~sL 80 (173)
T PLN02749 1 LRRRFSEDVSHLPEISDPEILKAFKDLMAASWDELPDSVVNDAKKALSKNTDDKAGQEALKNVFRAAEAVEEFGGTLVSL 80 (173)
T ss_pred CccccccccccCCCCCCHHHHHHHHHHHhcchhhCChHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccchh-----------------HHHHHHHHHhhcCCChhHHHHHHHHhhhhhhhhhhhhhcCCCCCcceeEEee
Q 027619 149 KMEFDDEIGLS-----------------VYQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVFYYG 211 (221)
Q Consensus 149 rmeiDDl~Gls-----------------~y~rY~~YLdsFgpdE~yLrKKVE~ELGtkmI~LKmRcsGlgseWGKVtllG 211 (221)
|||||||||+| +||||++|||||||||+|||||||+|||+|||||||||||||||||||||||
T Consensus 81 rmeidDl~GlsGEnv~PLPd~~~~Al~tay~rY~~YLdsFgp~E~yLrKKVE~ELG~kmi~lKmRcsGl~~eWgkvtllG 160 (173)
T PLN02749 81 RMEIDDLIGLSGENVKPLPDYIENALETAYQRYAAYLDSFGPEENYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTLLG 160 (173)
T ss_pred HHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHhhhcCCCcccceeeEee
Confidence 99999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccc
Q 027619 212 CQCHCGILA 220 (221)
Q Consensus 212 TSg~sgsy~ 220 (221)
||||||||.
T Consensus 161 TSGlsGSYv 169 (173)
T PLN02749 161 TSGLSGSYV 169 (173)
T ss_pred cCcccchhh
Confidence 999999995
No 3
>PRK08230 tartrate dehydratase subunit alpha; Validated
Probab=75.93 E-value=6.3 Score=36.42 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHH
Q 027619 87 EIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEE 140 (221)
Q Consensus 87 ei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEe 140 (221)
+|.++.++|+-..=..||+.|++..++|..+-+ +..++.+|++.+.-++..++
T Consensus 9 ~i~~~v~~l~~~a~~~lp~Dv~~al~~a~~~E~-s~~ak~~L~~ileN~~iA~~ 61 (299)
T PRK08230 9 KLTDIMAKFTAYISKRLPDDVTAKLKELKDAET-SPLAKIIYDTMFENQQLAID 61 (299)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHHhc
Confidence 488999999999999999999999999999954 45579999999999888775
No 4
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=73.24 E-value=59 Score=27.88 Aligned_cols=95 Identities=18% Similarity=0.256 Sum_probs=52.4
Q ss_pred CCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhhc-
Q 027619 79 HMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIG--IIMNIKMEFDDE- 155 (221)
Q Consensus 79 hlP~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgG--iL~~LrmeiDDl- 155 (221)
..=+|++|......|.+.+.-|..=.=++-+|.+.--+ =+..-|++++.++..=-+.+..-+ ++..+...+.+-
T Consensus 10 ~~~pi~y~~~~~ly~k~~~~fW~peEi~~~~D~~~~~~---Ls~~e~~~~~~~l~~~~~~D~~v~~~l~~~i~~~~~~~E 86 (281)
T PF00268_consen 10 NWNPIKYPWFWDLYKKAESNFWTPEEIDMSKDIKDWKK---LSEEEREAYKRILAFFAQLDSLVSENLLPNIMPEITSPE 86 (281)
T ss_dssp CTTS-SSHHHHHHHHHHHHT---GGGS-GGGHHHHHHH---S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHH
T ss_pred hCCCCCCHHHHHHHHHHHhCCCCchhcChhhhHHHHHh---CCHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCHHH
Confidence 33469999999999999999998655556666554433 234558888888765433333222 112333333321
Q ss_pred --cchh-------HHHH-HHHHHhhcCCChh
Q 027619 156 --IGLS-------VYQR-YATYLDAFGPDES 176 (221)
Q Consensus 156 --~Gls-------~y~r-Y~~YLdsFgpdE~ 176 (221)
+-++ .|++ |..+|+++++++.
T Consensus 87 ~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~ 117 (281)
T PF00268_consen 87 IRAFLTFQAFMEAIHAESYSYILDSLGNDPK 117 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Confidence 1111 3333 7788999996663
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=72.57 E-value=60 Score=28.21 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=27.1
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHcccC--CCchhHHHHH
Q 027619 73 FSEDVAHMPVIRDPEIQRAFKDLMAADWG--ELPASVIHDA 111 (221)
Q Consensus 73 fS~d~~hlP~i~Dpei~~afKdLmAasW~--elp~svv~~a 111 (221)
|....=++|.....++...+++-+...+. .+++.+++.+
T Consensus 197 ~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i 237 (394)
T PRK00411 197 FRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLI 237 (394)
T ss_pred CCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHH
Confidence 33344589999999999999988765443 4666665544
No 6
>PF04328 DUF466: Protein of unknown function (DUF466); InterPro: IPR007423 This is a small bacterial protein of unknown function.
Probab=69.08 E-value=5.6 Score=29.00 Aligned_cols=43 Identities=21% Similarity=0.425 Sum_probs=31.9
Q ss_pred HHHHhhhhhhccchhHHHHHHHHHhhcCCCh------hHHHHHHHHhhh
Q 027619 145 IMNIKMEFDDEIGLSVYQRYATYLDAFGPDE------SYLRKKVETELG 187 (221)
Q Consensus 145 L~~LrmeiDDl~Gls~y~rY~~YLdsFgpdE------~yLrKKVE~ELG 187 (221)
+..++--+..++|...|+||.+....--||+ .|-|...|..-|
T Consensus 9 ~~~~~~~~r~l~G~~~Ye~Yv~H~~~~HP~~p~ms~~eF~r~r~~~r~~ 57 (65)
T PF04328_consen 9 WRRVRWYARLLVGEPDYERYVEHMRRHHPDEPPMSEREFFRERQDARYG 57 (65)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHhc
Confidence 3345556778999999999999999999975 466665554433
No 7
>PRK10702 endonuclease III; Provisional
Probab=68.21 E-value=6.3 Score=33.62 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhccchh
Q 027619 83 IRDPEIQRAFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAV-EEFIGIIMNIKMEFDDEIGLS 159 (221)
Q Consensus 83 i~Dpei~~afKdLmAa--sW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAv-EeFgGiL~~LrmeiDDl~Gls 159 (221)
-+|+.+.+++..|+.. +|..|-..=.++.+.+++..+=- ..--+++.++|+.+ |+|||.+-..+.+|-.|=|+.
T Consensus 42 t~~~~v~~~~~~L~~~~pt~e~l~~a~~~~l~~~i~~~G~y---~~kA~~l~~~a~~i~~~~~~~~p~~~~~Ll~lpGVG 118 (211)
T PRK10702 42 ATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLY---NSKAENVIKTCRILLEQHNGEVPEDRAALEALPGVG 118 (211)
T ss_pred cCHHHHHHHHHHHHHHcCCHHHHHCCCHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHcCCCCCchHHHHhcCCccc
Confidence 3678888899888864 33333333355566666542210 12235667777776 788998888899999998887
No 8
>PF06798 PrkA: PrkA serine protein kinase C-terminal domain; InterPro: IPR010650 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry is found at the C terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=64.26 E-value=16 Score=32.29 Aligned_cols=50 Identities=22% Similarity=0.665 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhhhhhccchh---------------HHHHHHHHHhhc---------------CCChhHHHHHHHHhhh
Q 027619 138 VEEFIGIIMNIKMEFDDEIGLS---------------VYQRYATYLDAF---------------GPDESYLRKKVETELG 187 (221)
Q Consensus 138 vEeFgGiL~~LrmeiDDl~Gls---------------~y~rY~~YLdsF---------------gpdE~yLrKKVE~ELG 187 (221)
.++|=.-|.++|.+.++.++=- -+++|+.+.++| .|||.||| .+|..+|
T Consensus 83 ~~~y~~~l~~v~~~Y~~~v~~EV~~A~~~~~ee~~~~l~~nYl~~v~a~~~~~~~~d~~TGe~~~pdE~~mr-sIEe~ig 161 (254)
T PF06798_consen 83 RERYLEFLKSVRKEYDERVEKEVQEAFYYSYEEQIQNLFENYLDHVEAWINDEKVKDPFTGEELEPDERFMR-SIEERIG 161 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhcCCeeeCCCCcccCCccHHHHH-HHHHhcC
Confidence 4444455666666666655432 678899888765 38888887 5887776
Q ss_pred h
Q 027619 188 S 188 (221)
Q Consensus 188 t 188 (221)
.
T Consensus 162 i 162 (254)
T PF06798_consen 162 I 162 (254)
T ss_pred C
Confidence 3
No 9
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=63.73 E-value=23 Score=28.54 Aligned_cols=97 Identities=12% Similarity=0.173 Sum_probs=58.8
Q ss_pred HHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchh------HHHHHHHH-HhhcCCChh---
Q 027619 107 VIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLS------VYQRYATY-LDAFGPDES--- 176 (221)
Q Consensus 107 vv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgGiL~~LrmeiDDl~Gls------~y~rY~~Y-LdsFgpdE~--- 176 (221)
...+++..+.+.. ..+++|-.+.+.+| ++||=+=...-.+|-+.+|++ +-.-|.-| +.--|...-
T Consensus 6 ~~~~~~~i~~~~~---~~~~~ll~~L~~vQ--~~~g~ip~~~~~~iA~~l~v~~~~v~~v~tFY~~f~~~p~gk~~I~VC 80 (154)
T PRK07539 6 ELAAIEREIAKYP---RPRSAVIPALKIVQ--EQRGWVPDEAIEAVADYLGMPAIDVEEVATFYSMIFRQPVGRHVIQVC 80 (154)
T ss_pred HHHHHHHHHHHCC---CCHHHHHHHHHHHH--HHhCCCCHHHHHHHHHHhCcCHHHHHHHHHHHhhhCcCCCCCEEEEEc
Confidence 3445556666653 35778999999888 678777777888899999998 22223322 122232221
Q ss_pred -----H------HHHHHHHhhhhhhhhhhhhhcCCCCCcceeEEeeccccc
Q 027619 177 -----Y------LRKKVETELGSKMIFLKMRCAGLGSEWGKVFYYGCQCHC 216 (221)
Q Consensus 177 -----y------LrKKVE~ELGtkmI~LKmRcsGlgseWGKVtllGTSg~s 216 (221)
+ +-+.+|.+||-+ -|.-+++|+|+|..|.|++
T Consensus 81 ~g~~C~~~Ga~~l~~~l~~~L~i~--------~g~tt~dg~~~l~~~~ClG 123 (154)
T PRK07539 81 TSTPCWLRGGEAILAALKKKLGIK--------PGETTADGRFTLLEVECLG 123 (154)
T ss_pred CCchHHHCCHHHHHHHHHHHhCCC--------CCCcCCCCeEEEEEccccC
Confidence 1 234455555411 1444689999999777664
No 10
>COG1951 TtdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion]
Probab=63.25 E-value=20 Score=33.31 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHH
Q 027619 86 PEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEF 141 (221)
Q Consensus 86 pei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeF 141 (221)
-++....+|+...-=+.||+.|++..++|+.+ .++.+++.+|+...+-+|-+++-
T Consensus 8 e~l~~~v~~a~~~as~~lp~Dv~~al~~a~~~-Ees~~ak~~l~~il~N~~ia~~~ 62 (297)
T COG1951 8 EDLTESVADAFQEASTYLPPDVVQALAKALER-EESEIAKYVLLQILENSRIAAKE 62 (297)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHhh-hcCHHHHHHHHHHHHHHHHHHhc
Confidence 35666777777777789999999999999999 88999999999999999988763
No 11
>PRK06246 fumarate hydratase; Provisional
Probab=63.18 E-value=18 Score=33.05 Aligned_cols=59 Identities=27% Similarity=0.342 Sum_probs=48.6
Q ss_pred CCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHH
Q 027619 81 PVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEE 140 (221)
Q Consensus 81 P~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEe 140 (221)
..|+-.+|.++..+++...=..||+.|++..++|+.+ -++..++.+|+....-++..++
T Consensus 2 ~~i~~~~i~~~v~~~~~~a~~~lp~Dv~~~l~~a~~~-E~s~~ak~~l~~ileN~~iA~~ 60 (280)
T PRK06246 2 REIHVEDIIEAVAELCIEANYYLPDDVKEALKKAYEK-EESPIGKEILKAILENAEIAKE 60 (280)
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh-ccChhHHHHHHHHHHHHHHHhc
Confidence 3455556999999999988899999999999999986 5555678899988888887776
No 12
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=60.02 E-value=12 Score=34.95 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=27.1
Q ss_pred ccccccCC-CCCCC-CCHHHHHHHHHHHH----------cccCCCchhHHHHHHhhhcc
Q 027619 71 RSFSEDVA-HMPVI-RDPEIQRAFKDLMA----------ADWGELPASVIHDAKSALSR 117 (221)
Q Consensus 71 R~fS~d~~-hlP~i-~Dpei~~afKdLmA----------asW~elp~svv~~ak~alSk 117 (221)
|..+|-.- +-|.- .|||+++...++=. ....|+++-+...-.|+-..
T Consensus 41 R~L~Ecel~~~p~Y~nDpEmK~iid~~n~eaikkyqqT~~~f~e~~e~~~k~~~K~k~~ 99 (295)
T TIGR01478 41 RLLAEIQRPKNPHYHNDPELKEIIDKLNEEAIKKYQETHDPYEQLQELVEKNRTKSTGG 99 (295)
T ss_pred eehhhhccccCCCCCCcHHHHHHHHHHhHHHhhhhhhhcchHHHHHHHHHhcCCccccc
Confidence 44444444 55543 59999998887654 23455555555555555444
No 13
>PF02436 PYC_OADA: Conserved carboxylase domain; InterPro: IPR003379 This domain represents a conserved region in pyruvate carboxylase (PYC) (6.4.1.1 from EC), oxaloacetate decarboxylase alpha chain (OADA) (4.1.1.3 from EC), and transcarboxylase 5s subunit (2.1.3.1 from EC). The domain is found adjacent to the HMGL-like domain (IPR000891 from INTERPRO) and often close to the biotin_lipoyl domain (IPR000089 from INTERPRO) of biotin requiring enzymes.; PDB: 2NX9_B 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1S3H_A 1RQE_A 1U5J_A 1RQB_A 2QF7_B ....
Probab=56.22 E-value=13 Score=31.95 Aligned_cols=89 Identities=16% Similarity=0.322 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHH------HHHHHhhhhhhccch
Q 027619 85 DPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIG------IIMNIKMEFDDEIGL 158 (221)
Q Consensus 85 Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgG------iL~~LrmeiDDl~Gl 158 (221)
|-++.++..+|....|..+|++|++-++.-+-+ +-..-..|..+.|...-++++.--| -+..+|.++.+..|-
T Consensus 56 ~qA~~nV~~~~~g~r~~~~p~~v~~~~~G~~G~-pp~~~~~~l~~~vl~~~~~i~~RP~~~l~p~d~~~~r~~l~~~~g~ 134 (196)
T PF02436_consen 56 DQAVFNVLNGLLGERYKDFPDSVVDYLLGKYGK-PPGGFPEELRKKVLKGEEPITGRPGDLLPPADLDKLRKELEEKAGR 134 (196)
T ss_dssp HHHHHHHHTT-HHTTTSS-BHHHHHHHTTTT----TTSS-HHHHHHHHTTS---SSSGGGCS----HHHHHHHHHHHCTS
T ss_pred HHHHHHHHhhhcCccccchhHHHHHHhCcccCC-CCCCCCHHHHHHHhcCCCCCCCCccccCChhhHHHHHHHHHHHcCC
Confidence 445666666666678999999999998888876 4445556777777766555444334 477888888887774
Q ss_pred h--------------HHHHHHHHHhhcCCC
Q 027619 159 S--------------VYQRYATYLDAFGPD 174 (221)
Q Consensus 159 s--------------~y~rY~~YLdsFgpd 174 (221)
. +|..|.++-..||+-
T Consensus 135 ~~~dedvlsyal~P~v~~~f~~~~~~~g~~ 164 (196)
T PF02436_consen 135 EPTDEDVLSYALFPKVAEDFLKFRAKYGDV 164 (196)
T ss_dssp TSCHHHHHHHHHCHHHHHHHHHHHHHHS-G
T ss_pred CCCHHHHHHHhcCchhHHHHHHHHHhcCCC
Confidence 3 888888888888853
No 14
>PF05681 Fumerase: Fumarate hydratase (Fumerase); InterPro: IPR004646 This entry represents various Fe-S type hydro-lyases, including the alpha subunit from both L-tartrate dehydratase (TtdA; 4.2.1.32 from EC) and class 1 fumarate hydratases (4.2.1.2 from EC), which includes both aerobic (FumA) and anaerobic (FumB) types []. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase (see IPR000362 from INTERPRO). Proteins in this group represent a subset of closely related proteins or modules, including the Escherichia coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this group is unknown. Fumarate hydratase (also known as fumarase) is a component of the citric acid cycle. In facultative anaerobes such as E. coli, fumarase also engages in the reductive pathway from oxaloacetate to succinate during anaerobic growth. Three fumarases, FumA, FumB, and FumC, have been reported in E. coli. fumA and fumB genes are homologous and encode products of identical sizes which form thermolabile dimers of Mr 120,000. FumA and FumB are class I enzymes and are members of the iron-dependent hydrolases, which include aconitase and malate hydratase. The active FumA contains a 4Fe-4S centre, and it can be inactivated upon oxidation to give a 3Fe-4S centre [].; GO: 0016829 lyase activity
Probab=55.91 E-value=22 Score=32.09 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=41.2
Q ss_pred HHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHH
Q 027619 89 QRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEE 140 (221)
Q Consensus 89 ~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEe 140 (221)
.++..+|+-.-=..||+.+++..++|+.+.+.+. ++.+|+...+-++..++
T Consensus 2 ~~~v~~~~~~a~~~lp~Dv~~al~~a~~~E~~~~-ak~vl~~ileN~~iA~~ 52 (271)
T PF05681_consen 2 TEAVAELIIKASTYLPDDVLEALKKAYERETSPL-AKWVLEQILENAEIAAK 52 (271)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHccCCHH-HHHHHHHHHHHHHHHhh
Confidence 4456666666668999999999999999966555 99999999888887765
No 15
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=52.52 E-value=12 Score=29.40 Aligned_cols=46 Identities=26% Similarity=0.559 Sum_probs=30.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc-----------------ccC--CCc-------hhHHHHHHhhhcccCC
Q 027619 75 EDVAHMPVIRDPEIQRAFKDLMAA-----------------DWG--ELP-------ASVIHDAKSALSRNND 120 (221)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa-----------------sW~--elp-------~svv~~ak~alSk~td 120 (221)
|+.+.||+++|.+|.+-+..|++- +|. .+| +.|+.+++.|++...+
T Consensus 3 et~S~lP~l~~~~i~~Qv~~ll~qG~~i~iE~ad~r~~r~~~W~mW~~p~~~~~~~~~Vl~el~~c~~~~p~ 74 (99)
T PF00101_consen 3 ETFSYLPPLTDEEIAKQVRYLLSQGWIIGIEHADPRRFRTSYWQMWKLPMFGCTDPAQVLAELEACLAEHPG 74 (99)
T ss_dssp STTTTSS---HHHHHHHHHHHHHTT-EEEEEEESCGGSTSSS-EEESSEBTTBSSHHHHHHHHHHHHHHSTT
T ss_pred cccccCCCCCHHHHHHHHHhhhhcCceeeEEecCCCCCCCCEeecCCCCCcCCCCHHHHHHHHHHHHHhCCC
Confidence 567899999999999999999985 455 554 4466666666665443
No 16
>PTZ00370 STEVOR; Provisional
Probab=50.36 E-value=21 Score=33.40 Aligned_cols=54 Identities=17% Similarity=0.307 Sum_probs=36.5
Q ss_pred ccccccccCCCCCCC-CCHHHHHHHHHHHH----------cccCCCchhHHHHHHhhhcccCCch
Q 027619 69 CNRSFSEDVAHMPVI-RDPEIQRAFKDLMA----------ADWGELPASVIHDAKSALSRNNDDK 122 (221)
Q Consensus 69 ~~R~fS~d~~hlP~i-~Dpei~~afKdLmA----------asW~elp~svv~~ak~alSk~tdDk 122 (221)
-.|..+|-.-+-|.- .|||+++...++-. ....|+++-+...-.|+-..+..++
T Consensus 39 ~sR~L~Ecel~~p~YdNDpemK~i~d~~n~eaikkyqqT~~~f~e~~e~~~k~~~K~k~~~d~e~ 103 (296)
T PTZ00370 39 KSRLLAQTQNHNPHYHNDPELKEIIDKMNEEAIKKYQQTHDPYEQLKEVVEKNGTKYTGGNDAEP 103 (296)
T ss_pred ceeehhhhhcCCCCCCCcHHHHHHHHHHhHHHhhhhhhhcchHHHHHHHHHhcCCccccccCcch
Confidence 458888888888854 49999998887654 2455666666666666655544433
No 17
>PRK10880 adenine DNA glycosylase; Provisional
Probab=49.84 E-value=25 Score=32.54 Aligned_cols=72 Identities=15% Similarity=0.097 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhccchh
Q 027619 84 RDPEIQRAFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAV-EEFIGIIMNIKMEFDDEIGLS 159 (221)
Q Consensus 84 ~Dpei~~afKdLmAa--sW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAv-EeFgGiL~~LrmeiDDl~Gls 159 (221)
+|..+..+|..||.. +|..|-++-.+++.+++..-+=- . --+|..++|+.+ +++||.+-..+.+|-.|=|+.
T Consensus 44 ~v~~v~~~~~rl~~~fPt~~~La~a~~eel~~~~~glGyy---~-RAr~L~~~A~~i~~~~~g~~p~~~~~L~~LpGIG 118 (350)
T PRK10880 44 QVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYY---A-RARNLHKAAQQVATLHGGEFPETFEEVAALPGVG 118 (350)
T ss_pred cHHHHHHHHHHHHHHCcCHHHHHCcCHHHHHHHHHcCChH---H-HHHHHHHHHHHHHHHhCCCchhhHHHHhcCCCcc
Confidence 566777888888874 23333333345555555543322 1 257888999988 889998888888888888887
No 18
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=49.32 E-value=18 Score=28.49 Aligned_cols=26 Identities=19% Similarity=0.579 Sum_probs=23.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHccc
Q 027619 75 EDVAHMPVIRDPEIQRAFKDLMAADW 100 (221)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAasW 100 (221)
|+.+-||+++|.+|.+.+..|++--|
T Consensus 4 ~t~sylp~lt~~~i~~QI~yll~qG~ 29 (99)
T cd03527 4 ETFSYLPPLTDEQIAKQIDYIISNGW 29 (99)
T ss_pred cccccCCCCCHHHHHHHHHHHHhCCC
Confidence 57889999999999999999998655
No 19
>COG4423 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.91 E-value=41 Score=26.20 Aligned_cols=48 Identities=27% Similarity=0.319 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcc-cCCchhHHHHHH
Q 027619 82 VIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSR-NNDDKAGQEVLK 129 (221)
Q Consensus 82 ~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk-~tdDkAGqeaLk 129 (221)
.||||++-..-+.|-+.-=.-+-+.|+..++..|.+ ...-+.=.|+|+
T Consensus 4 nIKDp~~d~lar~LA~rtg~S~t~AV~~Al~~~lar~r~r~~pL~~~l~ 52 (81)
T COG4423 4 NIKDPEVDRLARELAARTGESKTDAVRDALKERLARLRAREIPLRERLA 52 (81)
T ss_pred ccCChHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 599999998888887766667788888888888888 333333334433
No 20
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=45.64 E-value=37 Score=35.05 Aligned_cols=103 Identities=21% Similarity=0.220 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHH-cccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccch-hHH--
Q 027619 86 PEIQRAFKDLMA-ADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGL-SVY-- 161 (221)
Q Consensus 86 pei~~afKdLmA-asW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgGiL~~LrmeiDDl~Gl-s~y-- 161 (221)
|+|..-+|-|=| +-|.+.+.+-.-. .-|+-+.|---..|.|+.. +.|=.-|-|+=.-+.=|-=|+|+.|. .-.
T Consensus 493 p~v~d~ikHLPaVA~~gD~a~ape~~--~Ylela~~~gyd~e~L~~i-a~avd~EaFylrf~~gr~ii~dIL~~~gd~~r 569 (715)
T COG1107 493 PEVEDDIKHLPAVAGVGDRAKAPEAE--QYLELAAERGYDREDLEKI-ALAVDYEAFYLRFMDGRGIIADILGTTGDADR 569 (715)
T ss_pred cchhhhhhcCcceeeecccccChhHH--HHHHHHHhcCCCHHHHHHH-HHHHhHHHHHhhhcccchHHHHHhhcccchhH
Confidence 333333444333 3588887662221 1111111111224556553 44555688988888888889999994 444
Q ss_pred -HHHHHHHhhcCCChhHHHHHHHHhhhhhhhhhh-hhh
Q 027619 162 -QRYATYLDAFGPDESYLRKKVETELGSKMIFLK-MRC 197 (221)
Q Consensus 162 -~rY~~YLdsFgpdE~yLrKKVE~ELGtkmI~LK-mRc 197 (221)
.+-+..|. .+-|++||.+|-+.+-|+| +|.
T Consensus 570 H~~Lv~~L~------~q~~~~ve~qL~aa~~~vk~~~l 601 (715)
T COG1107 570 HRELVDHLY------EQAKEAVEEQLRAALPHVKSERL 601 (715)
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHhhhccceeec
Confidence 44455553 3679999999999999999 775
No 21
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=44.13 E-value=23 Score=22.39 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=15.2
Q ss_pred HHHHhhcCCChhHHHHHHHHhhh
Q 027619 165 ATYLDAFGPDESYLRKKVETELG 187 (221)
Q Consensus 165 ~~YLdsFgpdE~yLrKKVE~ELG 187 (221)
...|..+|-|..-|++.+|..||
T Consensus 31 ~~il~~~~id~~~l~~~i~~~lg 53 (53)
T PF02861_consen 31 ARILKKLGIDPEQLKAAIEKALG 53 (53)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCHHHHHHHHHHHhC
Confidence 45566667777777777776665
No 22
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=43.88 E-value=80 Score=26.85 Aligned_cols=57 Identities=23% Similarity=0.268 Sum_probs=45.1
Q ss_pred HHHHHHHHHH---cccCCCchhHHHHHHhhhcccC-CchhHHHHHHHHHHHHHHHHHHHHH
Q 027619 88 IQRAFKDLMA---ADWGELPASVIHDAKSALSRNN-DDKAGQEVLKNVFSAAEAVEEFIGI 144 (221)
Q Consensus 88 i~~afKdLmA---asW~elp~svv~~ak~alSk~t-dDkAGqeaLknvfrAAeAvEeFgGi 144 (221)
.+.||-.||. .+|+-++++.|+.+-.-++++. |...-|-+|...-.....-...++.
T Consensus 37 ~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~ 97 (160)
T PF11841_consen 37 ALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQL 97 (160)
T ss_pred HHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHH
Confidence 5789999998 4999999999998888888777 7777888777776666665555553
No 23
>TIGR00722 ttdA_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=43.52 E-value=45 Score=30.38 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=40.7
Q ss_pred HHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHH
Q 027619 89 QRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEE 140 (221)
Q Consensus 89 ~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEe 140 (221)
.++..+|+-..=..||+.|.+..++|..+ -+...++.+|+....-++..++
T Consensus 2 ~~~v~~~~~~a~~~lp~Dv~~al~~a~~~-E~s~~ak~~l~~ileN~~iA~~ 52 (273)
T TIGR00722 2 TEAVKEAIKEAVTRLPEDVVDAIKEAYDR-EESEIAKINLEAILDNIEIAEK 52 (273)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHhc
Confidence 45666777666788999999999999977 4555689999999888887765
No 24
>PRK15389 fumarate hydratase; Provisional
Probab=43.21 E-value=48 Score=33.05 Aligned_cols=74 Identities=8% Similarity=0.022 Sum_probs=57.2
Q ss_pred ccccccccccCCC-------CCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHH
Q 027619 67 IGCNRSFSEDVAH-------MPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVE 139 (221)
Q Consensus 67 ~~~~R~fS~d~~h-------lP~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvE 139 (221)
.-.+|.|.++++- +=.|.-.+|.++.++|+-..=..||+.|+...++|+.+.-+...++.+|...+.-++..+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~v~~l~~~a~~~lp~Dv~~aL~~a~~~~E~s~~ak~vl~~ileN~~iA~ 97 (536)
T PRK15389 18 TEYRLLTSDGVSVAEFEGREILKVEPEALTLLAEEAFHDISHLLRPAHLQQLAKILDDPEASDNDKFVALDLLKNANIAA 97 (536)
T ss_pred ceeEEeccCceEEEeeCCeeEEEECHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh
Confidence 4445666654442 223455569999999999988999999999999998665667889999999998888776
Q ss_pred H
Q 027619 140 E 140 (221)
Q Consensus 140 e 140 (221)
+
T Consensus 98 ~ 98 (536)
T PRK15389 98 G 98 (536)
T ss_pred c
Confidence 5
No 25
>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.
Probab=42.83 E-value=41 Score=30.91 Aligned_cols=50 Identities=22% Similarity=0.407 Sum_probs=37.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc----ccCCCc----hhHHHHHHhhhcccCCchhH
Q 027619 75 EDVAHMPVIRDPEIQRAFKDLMAA----DWGELP----ASVIHDAKSALSRNNDDKAG 124 (221)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa----sW~elp----~svv~~ak~alSk~tdDkAG 124 (221)
+.+..+|....-++..+++..-++ .|..+| -.++..+...|.++.|+.+-
T Consensus 24 ~~i~~~~~~~~~~v~~av~~A~~a~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~ 81 (482)
T cd07119 24 EVIATVPEGTAEDAKRAIAAARRAFDSGEWPHLPAQERAALLFRIADKIREDAEELAR 81 (482)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHcCCCchhhCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345667888888999999988776 499999 45677777777777766654
No 26
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=42.63 E-value=1.3e+02 Score=25.34 Aligned_cols=102 Identities=23% Similarity=0.296 Sum_probs=65.6
Q ss_pred CCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHH--HHHHHhhc--CC---C
Q 027619 102 ELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSVYQR--YATYLDAF--GP---D 174 (221)
Q Consensus 102 elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgGiL~~LrmeiDDl~Gls~y~r--Y~~YLdsF--gp---d 174 (221)
++++....++++.+.+..+ -|++|-.+.+++| ++||-+=...-.+|-+.+|++.-+= -++|-..| -| .
T Consensus 15 ~~~~~~~~~i~~ii~~~~~---~~~~li~~L~~iQ--~~~GyIp~e~~~~iA~~l~v~~a~V~gVatFY~~f~~~P~Gk~ 89 (169)
T PRK07571 15 PSGDKRFKVLEATMKRNQY---RQDALIEVLHKAQ--ELFGYLERDLLLYVARQLKLPLSRVYGVATFYHLFSLKPSGEH 89 (169)
T ss_pred cCcHHHHHHHHHHHHHcCC---CHHHHHHHHHHHH--HHcCCCCHHHHHHHHHHhCcCHHHHHHHHHHccccCcCCCCCE
Confidence 4555556666777777532 5779999999988 6888777777788889999981111 12222333 23 1
Q ss_pred h--------------hHHHHHHHHhhhhhhhhhhhhhcCCCCCcceeEEeeccccc
Q 027619 175 E--------------SYLRKKVETELGSKMIFLKMRCAGLGSEWGKVFYYGCQCHC 216 (221)
Q Consensus 175 E--------------~yLrKKVE~ELGtkmI~LKmRcsGlgseWGKVtllGTSg~s 216 (221)
. .=|-+.+|.+||-+ -|--++=|++||..+.|++
T Consensus 90 ~I~VC~g~aC~~~G~~~ll~~l~~~Lgi~--------~gett~DG~ftL~~~~ClG 137 (169)
T PRK07571 90 TCVVCTGTACYVKGSAAILEDLENELGIK--------AGETTADGKLSLLTARCLG 137 (169)
T ss_pred EEEEcCChHHHHCCcHHHHHHHHHHhCCC--------CCCcCCCCeEEEEEecccC
Confidence 1 11346677777743 2334666999999988875
No 27
>TIGR01083 nth endonuclease III. This equivalog model identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=40.15 E-value=57 Score=26.77 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhccch
Q 027619 82 VIRDPEIQRAFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAV-EEFIGIIMNIKMEFDDEIGL 158 (221)
Q Consensus 82 ~i~Dpei~~afKdLmAa--sW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAv-EeFgGiL~~LrmeiDDl~Gl 158 (221)
..++..+.+++..|... +|..|-..-.++.+.+++..+=- .---+++...|+++ ++|+|.+...+.+|-.+=|+
T Consensus 38 qt~~~~~~~~~~~l~~~~pt~~~l~~~~~~~L~~~ir~~G~~---~~Ka~~i~~~a~~i~~~~~~~~~~~~~~L~~l~GI 114 (191)
T TIGR01083 38 QATDKSVNKATKKLFEVYPTPQALAQAGLEELEEYIKSIGLY---RNKAKNIIALCRILVERYGGEVPEDREELVKLPGV 114 (191)
T ss_pred hCcHHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHHcCCCCchHHHHHHhCCCC
Confidence 34677778888777753 12222111222333333332211 12235666777775 67888777788888888888
Q ss_pred h
Q 027619 159 S 159 (221)
Q Consensus 159 s 159 (221)
.
T Consensus 115 G 115 (191)
T TIGR01083 115 G 115 (191)
T ss_pred c
Confidence 7
No 28
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=39.54 E-value=46 Score=29.65 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHHcccCCCchhH----HHHHHhhhcccCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhccc
Q 027619 83 IRDPEIQRAFKDLMAADWGELPASV----IHDAKSALSRNNDDKAGQEVLKNVFSAAEAV-EEFIGIIMNIKMEFDDEIG 157 (221)
Q Consensus 83 i~Dpei~~afKdLmAasW~elp~sv----v~~ak~alSk~tdDkAGqeaLknvfrAAeAv-EeFgGiL~~LrmeiDDl~G 157 (221)
.++..+..++..|++. |-. |+++ .+++.+++...+=- . --+|+.++|+.+ ++|||.+-..+.+|-.|=|
T Consensus 39 T~v~~v~~~~~rl~~~-fpt-~~~La~a~~eeL~~~~~~lG~y--~--RAr~L~~~A~~i~~~~~g~~p~~~~~L~~LpG 112 (275)
T TIGR01084 39 TQVATVIPYFERFLER-FPT-VQALANAPQDEVLKLWEGLGYY--A--RARNLHKAAQEVVEEFGGEFPQDFEDLAALPG 112 (275)
T ss_pred ccHHHHHHHHHHHHHh-CCC-HHHHHCcCHHHHHHHHHHCCcH--H--HHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCC
Confidence 3677788888888864 321 2222 23333333332221 1 146888999887 5688888877777777777
Q ss_pred hh
Q 027619 158 LS 159 (221)
Q Consensus 158 ls 159 (221)
+.
T Consensus 113 IG 114 (275)
T TIGR01084 113 VG 114 (275)
T ss_pred CC
Confidence 77
No 29
>TIGR03688 pupylate_PafA2 proteasome accessory factor PafA2. This protein family is paralogous to (and distinct from) the PafA (proteasome accessory factor) first described in Mycobacterium tuberculosis (see TIGR03686). Members of both this family and TIGR03686 itself tend to cluster with each other, with the ubiquitin analog Pup (TIGR03687) associated with targeting to the proteasome, and with proteasome subunits themselves.
Probab=35.56 E-value=8.1 Score=37.89 Aligned_cols=72 Identities=26% Similarity=0.350 Sum_probs=49.3
Q ss_pred cccccccccCCCCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHH-HH-HHH
Q 027619 68 GCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEE-FI-GII 145 (221)
Q Consensus 68 ~~~R~fS~d~~hlP~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEe-Fg-GiL 145 (221)
|--|+|- | ..=|+.+-||..+.+.-+ .-|+||-.++. +|+++..+ -| |-|
T Consensus 87 NGaRlYv-D-haHPEYstpEc~~~~d~v-----------------------~~D~AGe~i~~---~A~~~l~~~~g~~~v 138 (485)
T TIGR03688 87 NGARFYV-D-HAHPEYSSPEVTNPRDAV-----------------------LYDKAGDRIMA---AAAEHAASVPGAPPL 138 (485)
T ss_pred CCceEec-c-CCCccccCcccCCHHHHH-----------------------HHHHhHHHHHH---HHHHHHHhCCCCCce
Confidence 4457887 5 456999999988766433 23789988887 55555555 33 356
Q ss_pred HHHhhhhhhccchhHHHHHHHHHhhcCCChhHHH
Q 027619 146 MNIKMEFDDEIGLSVYQRYATYLDAFGPDESYLR 179 (221)
Q Consensus 146 ~~LrmeiDDl~Gls~y~rY~~YLdsFgpdE~yLr 179 (221)
.-.|.-.| .-| .|||-|||||=
T Consensus 139 ~l~KNN~D-~kG-----------~SyG~HENYLv 160 (485)
T TIGR03688 139 KLYKNNVD-GKG-----------ASYGSHENYLM 160 (485)
T ss_pred EEEecCcC-CCC-----------cccccccceec
Confidence 65666666 344 58999999974
No 30
>PRK06310 DNA polymerase III subunit epsilon; Validated
Probab=35.55 E-value=58 Score=28.06 Aligned_cols=89 Identities=12% Similarity=0.228 Sum_probs=45.1
Q ss_pred ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchh---------HH--------
Q 027619 99 DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLS---------VY-------- 161 (221)
Q Consensus 99 sW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgGiL~~LrmeiDDl~Gls---------~y-------- 161 (221)
.|.+.|.--...+-+.+....++ -|.|+.||.-.|+-...+=. .++ .++++.-++ .|
T Consensus 130 ~~~~~~~~~L~~l~~~~g~~~~~--aH~Al~Da~at~~vl~~l~~---~~~-~~~~l~~~~~~~~~~~~~~fGK~kG~~~ 203 (250)
T PRK06310 130 EYGDSPNNSLEALAVHFNVPYDG--NHRAMKDVEINIKVFKHLCK---RFR-TLEQLKQILSKPIKMKYMPLGKHKGRLF 203 (250)
T ss_pred hcccCCCCCHHHHHHHCCCCCCC--CcChHHHHHHHHHHHHHHHH---hcc-cHHHHHHHhhcCcccccccCcccCCCCc
Confidence 36555643334444444443333 38888888777665443311 111 223333333 11
Q ss_pred ----HHHHHHHhhcCCChhHHHHHHHHhhhhhhhhhhhhhcCCC
Q 027619 162 ----QRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLG 201 (221)
Q Consensus 162 ----~rY~~YLdsFgpdE~yLrKKVE~ELGtkmI~LKmRcsGlg 201 (221)
..|..++-.=|= ..||||++++ +||.||-|-+
T Consensus 204 ~~~~~~y~~w~~~~~~-~~~~~~~~~~-------~l~~~~~~~~ 239 (250)
T PRK06310 204 SEIPLEYLQWASKMDF-DQDLLFSIRS-------EIKHRKKGTG 239 (250)
T ss_pred ccCCHHHHHHHHhCCC-CcchHHHHHH-------HHHHhhccCc
Confidence 134444422121 2478888888 5789998854
No 31
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=35.37 E-value=42 Score=24.30 Aligned_cols=22 Identities=45% Similarity=0.754 Sum_probs=17.3
Q ss_pred hhhhccchhHHH--HHHHHHhhcC
Q 027619 151 EFDDEIGLSVYQ--RYATYLDAFG 172 (221)
Q Consensus 151 eiDDl~Gls~y~--rY~~YLdsFg 172 (221)
||-|.||+|.|+ +|..+|+.-|
T Consensus 20 eiA~~~gls~~~aR~yL~~Le~eG 43 (62)
T PF04703_consen 20 EIADALGLSIYQARYYLEKLEKEG 43 (62)
T ss_dssp HHHHHHTS-HHHHHHHHHHHHHCT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC
Confidence 788999999665 7888888766
No 32
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=34.41 E-value=56 Score=34.34 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=8.5
Q ss_pred ceeEEeecccccc
Q 027619 205 GKVFYYGCQCHCG 217 (221)
Q Consensus 205 GKVtllGTSg~sg 217 (221)
.||.|+|+.|+++
T Consensus 420 ~kVlvvGaGGlG~ 432 (1008)
T TIGR01408 420 LNIFLVGCGAIGC 432 (1008)
T ss_pred CcEEEECCChHHH
Confidence 3677777777654
No 33
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.99 E-value=25 Score=29.17 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=17.6
Q ss_pred hcCCChh--HHHHHHHHhhhhh
Q 027619 170 AFGPDES--YLRKKVETELGSK 189 (221)
Q Consensus 170 sFgpdE~--yLrKKVE~ELGtk 189 (221)
.|+.+|+ -+|.++|++||..
T Consensus 86 ~f~d~e~g~~vr~~IE~~Lg~~ 107 (117)
T COG3215 86 QFTDGENGLKVRNQIETLLGGT 107 (117)
T ss_pred eccCCCchhhHHHHHHHHHHhh
Confidence 5888998 8899999999975
No 34
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=32.84 E-value=54 Score=27.07 Aligned_cols=53 Identities=23% Similarity=0.434 Sum_probs=34.8
Q ss_pred hhhccchh--HHHHHHHHHhhcCC-----ChhHHHHHHHHhhhhhhhhhhhhhcCCCCCcceeEEeecccccc
Q 027619 152 FDDEIGLS--VYQRYATYLDAFGP-----DESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVFYYGCQCHCG 217 (221)
Q Consensus 152 iDDl~Gls--~y~rY~~YLdsFgp-----dE~yLrKKVE~ELGtkmI~LKmRcsGlgseWGKVtllGTSg~sg 217 (221)
|-+..|.| .-.|+..+|+.||. +=.+|.+.+++-|| ....| +|.|+|+..++-
T Consensus 38 L~~~~~v~~~tirrDl~~l~~~G~~~~gy~v~~l~~~~~~~l~------------~~~~~-rV~IIGaG~iG~ 97 (213)
T PRK05472 38 LAEALGVDSAQIRKDLSYFGEFGKRGVGYNVEELLEFIEKILG------------LDRTW-NVALVGAGNLGR 97 (213)
T ss_pred HHHHhCcCHHHHHHHHHHHHhcCCCCCCeeHHHHHHHHHHHhC------------CCCCc-EEEEECCCHHHH
Confidence 34444554 55788888888885 33567777777664 33445 699999877653
No 35
>TIGR03686 pupylate_PafA proteasome accessory factor PafA. Members of this family are PafA (proteasome accessory factor A), a protein shown to regulate steady-state levels of certain proteasome targets in Mycobacterium tuberculosis. Iyer, et al (2008) suggest that PafA is the ligase for Pup, a ubiquitin analog attached to an epsilon-amino group of a Lys side-chain to direct the target to the proteasome.
Probab=32.65 E-value=11 Score=36.69 Aligned_cols=75 Identities=27% Similarity=0.385 Sum_probs=48.9
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHH-HHHH--HHHH
Q 027619 69 CNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEA-VEEF--IGII 145 (221)
Q Consensus 69 ~~R~fS~d~~hlP~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeA-vEeF--gGiL 145 (221)
--|.|- |+..=|+.+-||..+.+.-+ .-|+||-.++...-+.|+. ..+- ||-|
T Consensus 49 GaRlYv-D~gaHPEYstpEc~~~~d~v-----------------------~~D~AGe~i~~~~a~~a~~~l~~~g~~~~v 104 (453)
T TIGR03686 49 GSRLYL-DVGSHPEYATAECDSLRQLI-----------------------AHDRAGELILNELADEAEQRLAEEGIGGTV 104 (453)
T ss_pred CceEEe-cCCCCCCcCCcccCCHHHHH-----------------------HHHHhHHHHHHHHHHHHHHHHHhcCCCCce
Confidence 357777 88767999999988766433 2378998888877666542 2222 3344
Q ss_pred HHHhhhhhhccchhHHHHHHHHHhhcCCChhHHH
Q 027619 146 MNIKMEFDDEIGLSVYQRYATYLDAFGPDESYLR 179 (221)
Q Consensus 146 ~~LrmeiDDl~Gls~y~rY~~YLdsFgpdE~yLr 179 (221)
.=+|.-.| .-| .|||-|||||=
T Consensus 105 ~l~KNN~D-~~G-----------~SyG~HENYLv 126 (453)
T TIGR03686 105 YLFKNNTD-SAG-----------NSYGCHENYLV 126 (453)
T ss_pred EEEecccC-CCC-----------cccccccceec
Confidence 44444444 334 68999999973
No 36
>PF15062 ARL6IP6: Haemopoietic lineage transmembrane helix
Probab=32.39 E-value=10 Score=29.93 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhhhhccchh--HHHHHHHHHhhcCCC
Q 027619 140 EFIGIIMNIKMEFDDEIGLS--VYQRYATYLDAFGPD 174 (221)
Q Consensus 140 eFgGiL~~LrmeiDDl~Gls--~y~rY~~YLdsFgpd 174 (221)
.|++.+.++ ++|+. .|.=++.|||||.|.
T Consensus 22 ~~~~~~~~l------l~Gllv~~Ft~~ivYlDS~~PG 52 (85)
T PF15062_consen 22 QVGSLLSSL------LCGLLVCSFTWTIVYLDSSEPG 52 (85)
T ss_pred hhhHHHHHH------HHHHHHHHhhheeEEecccCCC
Confidence 455555544 68887 899999999999875
No 37
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=31.05 E-value=86 Score=29.05 Aligned_cols=109 Identities=29% Similarity=0.378 Sum_probs=69.6
Q ss_pred CCCCCCCCCH--HHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 027619 77 VAHMPVIRDP--EIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDD 154 (221)
Q Consensus 77 ~~hlP~i~Dp--ei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgGiL~~LrmeiDD 154 (221)
++.+|.++-| ++++-|.+|+..-|.| +-+.-+-+-++=||.-+-.|++.. ...+-+.|+
T Consensus 34 l~R~Pvv~~~~se~EK~~~~ll~e~e~e----------~sl~~dhel~~~qe~~~~~~q~~~---------~~e~~~eDe 94 (263)
T KOG4548|consen 34 LSRLPVVAPPLSELEKRFYSLLMELEQE----------KSLKPDHELKAFQEEKEKAWQAQL---------RKEVDEEDE 94 (263)
T ss_pred hhhcccccCCCCHHHHHHHHHHHHHHHH----------hccCCcHHHHHHHHHHHHHHHHHH---------HHhhcccch
Confidence 3456666654 8999999999988872 222222333333442233333322 266788899
Q ss_pred ccchhHHHHHH----HHHh-----hcCC-ChhHHHHHHHHhhhhhhhhhhhhhcCCCCCc
Q 027619 155 EIGLSVYQRYA----TYLD-----AFGP-DESYLRKKVETELGSKMIFLKMRCAGLGSEW 204 (221)
Q Consensus 155 l~Gls~y~rY~----~YLd-----sFgp-dE~yLrKKVE~ELGtkmI~LKmRcsGlgseW 204 (221)
-+|+++-.|=- +|++ .|+| |+.==+|-+|.+|..++..|=.||-|=-+-|
T Consensus 95 ~~~i~~~~~kd~~~~~~~~~~~~~RiTEaD~kNd~kSl~R~Ldr~LyLLV~~k~g~~s~w 154 (263)
T KOG4548|consen 95 FIGITANDRKDMWKKDLLDFDLPFRITEADPKNDRKSLERELDRKLYLLVKRKFGKSSVW 154 (263)
T ss_pred hhHHHHHHHHHHHHHHhhcccccccccCCCcccchhHHHHHhcceEEEEEeeccCcccee
Confidence 99999444433 3333 3443 5667789999999999998888997766655
No 38
>PRK06041 flagellar assembly protein J; Reviewed
Probab=30.60 E-value=98 Score=30.19 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHhh
Q 027619 160 VYQRYATYLDAFGPDESYLRKKVETEL 186 (221)
Q Consensus 160 ~y~rY~~YLdsFgpdE~yLrKKVE~EL 186 (221)
.++||..=++|=|+.+.||++|.|.-+
T Consensus 146 fl~~l~~~i~sG~~l~~fL~~e~~~~~ 172 (553)
T PRK06041 146 FLDRLAYSIDSGEPLKEFLKQEQDTVM 172 (553)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 788999999998999999999887643
No 39
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=30.59 E-value=42 Score=22.39 Aligned_cols=16 Identities=44% Similarity=0.816 Sum_probs=12.9
Q ss_pred CCCCHHHHHHHHHHHH
Q 027619 82 VIRDPEIQRAFKDLMA 97 (221)
Q Consensus 82 ~i~Dpei~~afKdLmA 97 (221)
.++||||++++-=+++
T Consensus 19 ~l~DpdvqrgL~~ll~ 34 (42)
T PF07849_consen 19 ALRDPDVQRGLGFLLA 34 (42)
T ss_pred HHcCHHHHHHHHHHHH
Confidence 4689999999877664
No 40
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=29.90 E-value=1.4e+02 Score=29.17 Aligned_cols=64 Identities=17% Similarity=0.422 Sum_probs=40.6
Q ss_pred CCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHH------HHHHHhhhhhhccchhHHHHHHHHHhhcCCCh
Q 027619 102 ELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIG------IIMNIKMEFDDEIGLSVYQRYATYLDAFGPDE 175 (221)
Q Consensus 102 elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgG------iL~~LrmeiDDl~Gls~y~rY~~YLdsFgpdE 175 (221)
.||..++.+.-++-++ -.++|+.|+.-.-|.. .++.|+.|+-+..|-. -+.|-.-||.|.|+-
T Consensus 97 ~iP~elv~~~~~~~s~----------a~~~W~~AR~~nDf~~F~P~Le~iv~l~re~a~~~~~~-~~~YDaLLd~yEpg~ 165 (494)
T PF02074_consen 97 KIPEELVEELARLTSE----------AEQAWEEARENNDFSAFAPYLEKIVELQREIAEYLGYE-LSPYDALLDDYEPGM 165 (494)
T ss_dssp CS-HHHHHHHHHHHHH----------HHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHCTST-TSHHHHHHHHHSTT-
T ss_pred CCCHHHHHHHHHHHHH----------HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHhhhCCCC
Confidence 3555555555554444 3578888887666665 3567778888888732 345999999999874
Q ss_pred h
Q 027619 176 S 176 (221)
Q Consensus 176 ~ 176 (221)
.
T Consensus 166 t 166 (494)
T PF02074_consen 166 T 166 (494)
T ss_dssp -
T ss_pred C
Confidence 3
No 41
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=29.87 E-value=44 Score=29.34 Aligned_cols=31 Identities=23% Similarity=0.573 Sum_probs=27.9
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 027619 70 NRSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (221)
Q Consensus 70 ~R~fS~d~~hlP~i~Dpei~~afKdLmAasW~ 101 (221)
.|.| |+.+-||+++|.+|.+-..=|+.-.|.
T Consensus 64 ~kkf-ETfSYLPpLtdeqI~kQVeYli~~GW~ 94 (176)
T PLN02289 64 KKKF-ETLSYLPDLTDEELAKEVDYLLRNKWV 94 (176)
T ss_pred ccce-eeeecCCCCCHHHHHHHHHHHHhCCCe
Confidence 4555 799999999999999999999999995
No 42
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=29.54 E-value=34 Score=27.87 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHhhhhhhhhhhhhhcCCCCCc
Q 027619 160 VYQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEW 204 (221)
Q Consensus 160 ~y~rY~~YLdsFgpdE~yLrKKVE~ELGtkmI~LKmRcsGlgseW 204 (221)
.|.||-+.| .+|=-.. -|..||+--|+++.|
T Consensus 115 ~y~kYfKMl-~~GvP~~-------------aVk~KM~~eGlDp~~ 145 (148)
T PF10152_consen 115 RYAKYFKML-KMGVPRE-------------AVKQKMQAEGLDPSL 145 (148)
T ss_pred cHHHHHHHH-HcCCCHH-------------HHHHHHHHcCCCHHH
Confidence 577776666 4563332 356788888888876
No 43
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=27.62 E-value=2e+02 Score=27.77 Aligned_cols=89 Identities=12% Similarity=0.222 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhhhccchh
Q 027619 84 RDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGII----MNIKMEFDDEIGLS 159 (221)
Q Consensus 84 ~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgGiL----~~LrmeiDDl~Gls 159 (221)
.|.|..-|+++|+- =.+|++.+...++.++.. -.-..|.-+++-=.-.|.....||+.+ ..||.---|-+-.-
T Consensus 121 D~SDl~~aLreLl~--r~kL~~~~~~~le~al~~-Le~e~~~K~ikAGINvAL~Ak~Fs~~~~lsa~~LR~lYR~Fl~~d 197 (372)
T PRK15338 121 DPSDLVLVLRELLR--RKQLEEIVRKKLESLLKH-VEEETDPKTLKAGINCALKARLFGKALSLKPGLLRASYRQFLQSE 197 (372)
T ss_pred CHHHHHHHHHHHHh--CccCCHHHHHHHHHHHHH-HHhhcCcHHHHhcCcHHHHHHHHHhhcCCCHHHHHHHHHHHHhcc
Confidence 35688899999887 568999665555555543 111223333443455677778899864 44666555544433
Q ss_pred --HHHHHHHHHhhcCCCh
Q 027619 160 --VYQRYATYLDAFGPDE 175 (221)
Q Consensus 160 --~y~rY~~YLdsFgpdE 175 (221)
+..=|..+++.||-++
T Consensus 198 ~~~~~iY~~Wieeyg~~~ 215 (372)
T PRK15338 198 SHEVEIYSDWIASYGYQR 215 (372)
T ss_pred CcHHHHHHHHHHHhCccH
Confidence 6677888999998875
No 44
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=27.60 E-value=86 Score=29.45 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=36.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc--ccCCCch----hHHHHHHhhhcccCCchhH
Q 027619 75 EDVAHMPVIRDPEIQRAFKDLMAA--DWGELPA----SVIHDAKSALSRNNDDKAG 124 (221)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~----svv~~ak~alSk~tdDkAG 124 (221)
+-+..+|..+.-|+..|++..-++ .|.++|. .++..+...|.++.|+.+-
T Consensus 37 ~~v~~~~~~~~~~v~~av~~A~~a~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~ 92 (482)
T PRK11241 37 DKLGSVPKMGADETRAAIDAANRALPAWRALTAKERANILRRWFNLMMEHQDDLAR 92 (482)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 456778888889999999888765 6999984 4566677777666555443
No 45
>PRK09847 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=27.44 E-value=1.8e+02 Score=27.37 Aligned_cols=49 Identities=16% Similarity=0.307 Sum_probs=35.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc----ccCCCchh----HHHHHHhhhcccCCchh
Q 027619 75 EDVAHMPVIRDPEIQRAFKDLMAA----DWGELPAS----VIHDAKSALSRNNDDKA 123 (221)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa----sW~elp~s----vv~~ak~alSk~tdDkA 123 (221)
+-+..+|..+..++..|++..-++ .|..+|.. ++..+...|.++.|+.+
T Consensus 46 ~~i~~v~~~~~~dv~~av~aA~~a~~~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela 102 (494)
T PRK09847 46 APLAKIARGKSVDIDRAVSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELA 102 (494)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 446778899999999999988776 59999954 45556666666655543
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=26.88 E-value=78 Score=30.90 Aligned_cols=37 Identities=19% Similarity=0.495 Sum_probs=33.3
Q ss_pred HcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHH
Q 027619 97 AADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGI 144 (221)
Q Consensus 97 AasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgGi 144 (221)
..+|+-|||.+....=++|.| |+..+++--|..|+|+
T Consensus 95 gv~~~slpDEill~IFs~L~k-----------k~LL~~~~VC~Rfyr~ 131 (419)
T KOG2120|consen 95 GVSWDSLPDEILLGIFSCLCK-----------KELLKVSGVCKRFYRL 131 (419)
T ss_pred CCCcccCCHHHHHHHHHhccH-----------HHHHHHHHHHHHHhhc
Confidence 457999999999999999988 6788899999999985
No 47
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Probab=26.26 E-value=1.6e+02 Score=22.67 Aligned_cols=98 Identities=19% Similarity=0.259 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHc---ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHH-HHHHH---HHHhhhhhhc
Q 027619 83 IRDPEIQRAFKDLMAA---DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEE-FIGII---MNIKMEFDDE 155 (221)
Q Consensus 83 i~Dpei~~afKdLmAa---sW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEe-FgGiL---~~LrmeiDDl 155 (221)
+++..+.+++..|.+. +|.+|-..-..+.+.++...+ -..--+.+..+|+++.+ ++|.. ..++.+|-.+
T Consensus 13 ~s~~~a~~~~~~l~~~~gpt~~~l~~~~~~~l~~~~~~~G----~~~kA~~i~~~a~~~~~~~~~~~~~~~~~~~~L~~l 88 (158)
T cd00056 13 TTDKAVNKAYERLFERYGPTPEALAAADEEELRELIRSLG----YRRKAKYLKELARAIVEGFGGLVLDDPDAREELLAL 88 (158)
T ss_pred ccHHHHHHHHHHHHHHhCCCHHHHHCCCHHHHHHHHHhcC----hHHHHHHHHHHHHHHHHHcCCccCCCcccHHHHHcC
Confidence 3455556666666544 222222212233444444333 12344566677777655 55555 7888888899
Q ss_pred cchhHHHHHHHHHhhcCCC----hhHHHHHHHH
Q 027619 156 IGLSVYQRYATYLDAFGPD----ESYLRKKVET 184 (221)
Q Consensus 156 ~Gls~y~rY~~YLdsFgpd----E~yLrKKVE~ 184 (221)
=|+.-+.-=+--+..||++ ..++++-+..
T Consensus 89 ~GIG~~tA~~~l~~~~~~~~~pvD~~v~r~~~~ 121 (158)
T cd00056 89 PGVGRKTANVVLLFALGPDAFPVDTHVRRVLKR 121 (158)
T ss_pred CCCCHHHHHHHHHHHCCCCCCccchhHHHHHHH
Confidence 9998444444444455543 4555554443
No 48
>TIGR00270 conserved hypothetical protein TIGR00270.
Probab=26.13 E-value=1.4e+02 Score=24.63 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhhh-------hhhccchh--HHHHHHHHHhhcCCChhHHHHHHHHhhhhhhhhh
Q 027619 136 EAVEEFIGIIMNIKME-------FDDEIGLS--VYQRYATYLDAFGPDESYLRKKVETELGSKMIFL 193 (221)
Q Consensus 136 eAvEeFgGiL~~Lrme-------iDDl~Gls--~y~rY~~YLdsFgpdE~yLrKKVE~ELGtkmI~L 193 (221)
+.++.||-.|..+|.+ +-+.+|++ .++||-. ...-|....+ +|++..||..+..|
T Consensus 65 ~l~~~~g~~Ir~~Re~~glSqeeLA~~lgvs~s~IsriE~--G~~~Ps~~~l-~kLa~~Lgvsl~el 128 (154)
T TIGR00270 65 ELVEDYGIIIRREREKRGWSQEQLAKKIQEKESLIKKIEN--AEIEPEPKVV-EKLEKLLKIKLREQ 128 (154)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHC--CCCCCCHHHH-HHHHHHhCCCHHHH
Confidence 6778888888888864 45556665 4444432 2355776655 78999999999886
No 49
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=25.47 E-value=1.6e+02 Score=29.83 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=55.4
Q ss_pred HHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhccch-----hHHH
Q 027619 91 AFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEF---DDEIGL-----SVYQ 162 (221)
Q Consensus 91 afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgGiL~~Lrmei---DDl~Gl-----s~y~ 162 (221)
.+-.|++..+..|.+++......++..++ +...|...-...++.+.|+.-|..+-.+. .|+.-+ ..|.
T Consensus 279 ~~~~ll~~~L~~L~PS~~~~l~~al~~~~----~~~~L~~L~~l~~~t~~Fa~~l~~~l~~~~~~~~l~~~~~l~~al~~ 354 (766)
T PF10191_consen 279 VLPKLLAETLSALQPSFPSRLSSALKRAG----PETKLETLIELYQATEHFARNLEHLLSSLPGESNLSKVEELLQALFE 354 (766)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHhhcC----chhhHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 55566666778899998877777775432 22236666667778888998777766553 233222 2799
Q ss_pred HHHHHHhhcCCCh
Q 027619 163 RYATYLDAFGPDE 175 (221)
Q Consensus 163 rY~~YLdsFgpdE 175 (221)
=|..|...||.-|
T Consensus 355 PF~~~q~~Yg~lE 367 (766)
T PF10191_consen 355 PFKPYQQRYGELE 367 (766)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998755
No 50
>PF01579 DUF19: Domain of unknown function (DUF19); InterPro: IPR002542 This presumed domain has no known function. It is found in one or two copies in several Caenorhabditis elegans proteins. The domain is roughly 130 amino acids long and contains 12 conserved cysteines, which suggests that it is an extracellular domain and that these cysteines form six intra-domain disulphide bridges.
Probab=25.47 E-value=46 Score=24.80 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHh
Q 027619 130 NVFSAAEAVEEFIGIIMNIKMEFDDEIGLSVYQRYATYLD 169 (221)
Q Consensus 130 nvfrAAeAvEeFgGiL~~LrmeiDDl~Gls~y~rY~~YLd 169 (221)
..+..-++|+.|-|...=++.+|-+.||-..+.+|..++.
T Consensus 107 ~~~~~~~~C~~~~~~~~C~~~~i~~~Cg~~~~~~f~~~~~ 146 (160)
T PF01579_consen 107 KSFDSKESCENFFGEKNCMKKEIKETCGDESWEKFRKHLL 146 (160)
T ss_pred hcccccccchhhcchhhHHHHHHHHHcCHHHHHHHHHHHH
Confidence 3345567888899999999999999999999999998886
No 51
>PTZ00171 acyl carrier protein; Provisional
Probab=25.37 E-value=2.9e+02 Score=22.83 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=42.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 027619 78 AHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIG 157 (221)
Q Consensus 78 ~hlP~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgGiL~~LrmeiDDl~G 157 (221)
+.-+.++..++...++++++..+ +++++-+.. ..+-.+.-|=+-|.-| ...-++|+--|+ +..-+|+..
T Consensus 61 ~~~~~~~~~~v~~~l~eiiae~l-~vd~~~I~~-----ds~~~~dLg~DSLd~v-eLv~~LEdeFgI----~Ipded~~~ 129 (148)
T PTZ00171 61 SKQYLLSKEDVLTRVKKVVKNFE-KVDASKITP-----ESNFVKDLGADSLDVV-ELLIAIEQEFNL----TIPDHDAEK 129 (148)
T ss_pred ccccccCHHHHHHHHHHHHHHHh-CCCHhhCCC-----CcchhhhcCCCHHHHH-HHHHHHHHHHCC----ccCHHHHHH
Confidence 45566778899999999999988 666543322 1222233333333322 222333332221 222345555
Q ss_pred hhHHHHHHHHHh
Q 027619 158 LSVYQRYATYLD 169 (221)
Q Consensus 158 ls~y~rY~~YLd 169 (221)
+...+.-.+|+.
T Consensus 130 i~TV~dlvd~V~ 141 (148)
T PTZ00171 130 IKTVQDAIDYIE 141 (148)
T ss_pred CCCHHHHHHHHH
Confidence 556666666653
No 52
>cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=24.51 E-value=1.3e+02 Score=27.22 Aligned_cols=45 Identities=18% Similarity=0.440 Sum_probs=26.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCc
Q 027619 77 VAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDD 121 (221)
Q Consensus 77 ~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~ak~alSk~tdD 121 (221)
+.++|...-.++..+++..-++ .|..+|.. ++..+...|.++.|+
T Consensus 12 ~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~ 62 (453)
T cd07149 12 IGRVPVASEEDVEKAIAAAKEGAKEMKSLPAYERAEILERAAQLLEERREE 62 (453)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHH
Confidence 3456666666777766665533 68888876 344445555544433
No 53
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative. This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.
Probab=24.10 E-value=1.2e+02 Score=28.59 Aligned_cols=48 Identities=15% Similarity=0.270 Sum_probs=35.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchh
Q 027619 76 DVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKA 123 (221)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~ak~alSk~tdDkA 123 (221)
-+.++|..+..++..|++.--++ +|..+|.. ++..+...|.++.|+.+
T Consensus 59 ~i~~~~~~~~~~v~~av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la 112 (511)
T TIGR01237 59 VVGKVGKASVEQAEHALQIAKKAFEAWKKTPVRERAGILRKAAAIMERRRHELN 112 (511)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHH
Confidence 45568888888998888877664 79999976 45667777777665554
No 54
>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms]
Probab=24.10 E-value=1.2e+02 Score=31.22 Aligned_cols=27 Identities=41% Similarity=0.836 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhc---------------CCC--hhHHHHHHHHhhh
Q 027619 160 VYQRYATYLDAF---------------GPD--ESYLRKKVETELG 187 (221)
Q Consensus 160 ~y~rY~~YLdsF---------------gpd--E~yLrKKVE~ELG 187 (221)
.+.||++|.++| .|| |..||+ +|..+|
T Consensus 505 l~d~Yvdnv~Awi~d~~~~D~~TGee~~pd~le~~L~~-iEe~~G 548 (649)
T COG2766 505 LFDRYVDNVDAWINDQTVRDPATGEELNPDALEKELRS-IEEQAG 548 (649)
T ss_pred HHHHHHHHHHHHhccCcccCcccccccCccHHHHHHHH-HHHhcC
Confidence 788999999875 577 888874 676665
No 55
>PLN02466 aldehyde dehydrogenase family 2 member
Probab=24.02 E-value=4.5e+02 Score=25.33 Aligned_cols=49 Identities=24% Similarity=0.342 Sum_probs=33.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc----ccCCCchhH----HHHHHhhhcccCCchh
Q 027619 75 EDVAHMPVIRDPEIQRAFKDLMAA----DWGELPASV----IHDAKSALSRNNDDKA 123 (221)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa----sW~elp~sv----v~~ak~alSk~tdDkA 123 (221)
+-+.++|.....|+.+|++..-++ .|..+|..- +..+...|.++.|+.+
T Consensus 84 ~~i~~v~~~~~~dv~~Av~aA~~a~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela 140 (538)
T PLN02466 84 EVIAHVAEGDAEDVNRAVAAARKAFDEGPWPKMTAYERSRILLRFADLLEKHNDELA 140 (538)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHcCcCccccCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 455678888889999999877666 499888653 4445555555555444
No 56
>TIGR01600 phage_tail_L lambda-like phage minor tail protein L. This model detects members of the family of phage lambda minor tail protein L.
Probab=23.78 E-value=21 Score=32.07 Aligned_cols=31 Identities=23% Similarity=0.515 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhhhhhccchh--HHHHHHHHHhh
Q 027619 140 EFIGIIMNIKMEFDDEIGLS--VYQRYATYLDA 170 (221)
Q Consensus 140 eFgGiL~~LrmeiDDl~Gls--~y~rY~~YLds 170 (221)
-+.|++.+|=..+|||+|-. .++=|+.|||+
T Consensus 73 Nl~G~Ital~~~~~dlvgAkV~r~~t~a~yLDa 105 (225)
T TIGR01600 73 NLFGLVSAMAEDLDSLVGATVVRRRTLARFLDA 105 (225)
T ss_pred ccccHHHHHHHHhCcccCcEEEEEEehhhhCcc
Confidence 37899999999999999977 66778999998
No 57
>PF03789 ELK: ELK domain ; InterPro: IPR005539 This domain is required for the nuclear localisation of these proteins []. All of these proteins are members of the Tale/Knox homeodomain family, a subfamily, containing homeobox IPR001356 from INTERPRO.; GO: 0003677 DNA binding, 0005634 nucleus
Probab=23.68 E-value=59 Score=19.92 Aligned_cols=15 Identities=27% Similarity=0.693 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhhh
Q 027619 138 VEEFIGIIMNIKMEF 152 (221)
Q Consensus 138 vEeFgGiL~~Lrmei 152 (221)
...++|-|.+||.||
T Consensus 7 lrkY~g~i~~Lr~Ef 21 (22)
T PF03789_consen 7 LRKYSGYISSLRQEF 21 (22)
T ss_pred HHHHhHhHHHHHHHh
Confidence 357899999999987
No 58
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=23.50 E-value=1.7e+02 Score=23.39 Aligned_cols=84 Identities=18% Similarity=0.216 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchh------HHHHHHHHH-hhcCCChh--------------HHHHH
Q 027619 123 AGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLS------VYQRYATYL-DAFGPDES--------------YLRKK 181 (221)
Q Consensus 123 AGqeaLknvfrAAeAvEeFgGiL~~LrmeiDDl~Gls------~y~rY~~YL-dsFgpdE~--------------yLrKK 181 (221)
..+++|-.+.+.+| ++||-+=...-.+|-+.+|++ +-.-|.-|- .--|...- =+-+.
T Consensus 13 ~~~~~li~~L~~vQ--~~~G~i~~~~~~~iA~~l~~~~~~v~~v~tFY~~f~~~p~gk~~I~VC~g~~C~~~Ga~~v~~~ 90 (148)
T TIGR01958 13 QKRSAIMPALMIAQ--EQKGWVTPEAIAAVAEMLGIPPVWVYEVATFYSMFDTEPVGRYHLQVCTNVPCALRGSEALLKY 90 (148)
T ss_pred CChhHHHHHHHHHH--HHhCCCCHHHHHHHHHHhCcCHHHHHHHHhHHhhcCcCCCCCEEEEEcCCchhhhcCHHHHHHH
Confidence 56789999999888 678877778888889999998 222233321 11222111 14566
Q ss_pred HHHhhhhhhhhhhhhhcCCCCCcceeEEeeccccc
Q 027619 182 VETELGSKMIFLKMRCAGLGSEWGKVFYYGCQCHC 216 (221)
Q Consensus 182 VE~ELGtkmI~LKmRcsGlgseWGKVtllGTSg~s 216 (221)
+|.+||-+ .|--++-|+|+|..|.|++
T Consensus 91 l~~~L~i~--------~g~~t~dg~~~l~~~~ClG 117 (148)
T TIGR01958 91 LENKLGIK--------PGETTPDGRFTLVEVECLG 117 (148)
T ss_pred HHHHhCCC--------CCCCCCCCeEEEEEcCccC
Confidence 77777733 2444778999999888775
No 59
>PF05480 Staph_haemo: Staphylococcus haemolytic protein; InterPro: IPR008846 This family consists of several different short Staphylococcal proteins, it contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus []. Gonococcal growth inhibitor from Staphylococcus acts on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death [].; GO: 0009405 pathogenesis
Probab=23.31 E-value=59 Score=22.82 Aligned_cols=29 Identities=17% Similarity=0.402 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcccCCCchhHHHHHHhhh
Q 027619 87 EIQRAFKDLMAADWGELPASVIHDAKSAL 115 (221)
Q Consensus 87 ei~~afKdLmAasW~elp~svv~~ak~al 115 (221)
.|.++.+.=...+|.+|--|.++.+.+.+
T Consensus 7 AI~n~V~Ag~~~Dwa~lgtsIv~iv~ngv 35 (43)
T PF05480_consen 7 AIKNTVQAGQNQDWAKLGTSIVDIVENGV 35 (43)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 56777788888999999999999988754
No 60
>PTZ00226 fumarate hydratase; Provisional
Probab=23.25 E-value=1.9e+02 Score=29.37 Aligned_cols=65 Identities=8% Similarity=-0.015 Sum_probs=50.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHH
Q 027619 76 DVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEE 140 (221)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEe 140 (221)
+-..|..|.-.+|..+.++++..-=..||+.+.+..++++........++.+|.+..+-|+..++
T Consensus 64 ~~~~m~~v~~e~l~~~~~~a~~~a~~~Lp~D~~~aL~~a~~d~E~s~~~k~vl~~iL~Na~iA~~ 128 (570)
T PTZ00226 64 GGKEILKVPPEALTKLTSYAFSDIQHFLRKSHLAQLRRILDDPEASDNDRFVAMTLLKNACIAAG 128 (570)
T ss_pred CCceeeeecHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhCccCCHHHHHHHHHHHHHHHHHhc
Confidence 34555566533488899999988889999999999999998656666688888888887776654
No 61
>PF01077 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S domain; InterPro: IPR006067 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP) (IPR005117 from INTERPRO), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a siroheme through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. In the E. coli SiR-HP enzyme (1.8.1.2 from EC), the iron is bound to cysteine residues at positions 433, 439, 478 and 482, the latter also forming the siroheme ligand.; GO: 0016491 oxidoreductase activity, 0020037 heme binding, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1ZJ8_B 1ZJ9_A 2AKJ_A 3VKT_A 3VKR_A 3VKS_A 3B0M_A 3B0N_A 3VKP_A 3B0J_A ....
Probab=22.80 E-value=33 Score=26.64 Aligned_cols=27 Identities=30% Similarity=0.717 Sum_probs=19.7
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHhhhhhh
Q 027619 162 QRYATYLDAFGPDESYLRKKVETELGSKM 190 (221)
Q Consensus 162 ~rY~~YLdsFgpdE~yLrKKVE~ELGtkm 190 (221)
.|+..|++..|++ .+|+.||.+||-|+
T Consensus 131 er~~~~i~r~G~e--~~~~~v~~~~~~~~ 157 (157)
T PF01077_consen 131 ERFKDFIERLGFE--KFREEVEERLGHKF 157 (157)
T ss_dssp -SHHHHHHHHHHH--HHHHHHHHTSCGG-
T ss_pred CCHHHHHHHHCHH--HHHHHHHHHhCcCC
Confidence 4777788888765 47888898888764
No 62
>cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like. NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism.
Probab=22.78 E-value=2.5e+02 Score=26.04 Aligned_cols=49 Identities=20% Similarity=0.347 Sum_probs=33.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc-----ccCCCchh----HHHHHHhhhcccCCchh
Q 027619 75 EDVAHMPVIRDPEIQRAFKDLMAA-----DWGELPAS----VIHDAKSALSRNNDDKA 123 (221)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa-----sW~elp~s----vv~~ak~alSk~tdDkA 123 (221)
+-+..+|.....++..+++..-++ .|..+|.. ++..+.+.|.++.|+.+
T Consensus 33 ~~i~~~~~~~~~~v~~av~~A~~A~~~~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la 90 (481)
T cd07141 33 EKICEVQEGDKADVDKAVKAARAAFKLGSPWRTMDASERGRLLNKLADLIERDRAYLA 90 (481)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345567777888898888887765 59999876 44555666666555443
No 63
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=22.70 E-value=80 Score=26.97 Aligned_cols=48 Identities=8% Similarity=0.169 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHH
Q 027619 83 IRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKN 130 (221)
Q Consensus 83 i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLkn 130 (221)
|+-.|++..++.+...+|++..+.+...+.+.+.++.-|+-|+=-+..
T Consensus 121 I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeE 168 (187)
T KOG0034|consen 121 ISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEE 168 (187)
T ss_pred CcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHH
Confidence 888999999999999999998888889999999998888887654443
No 64
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=22.29 E-value=96 Score=20.75 Aligned_cols=25 Identities=32% Similarity=0.639 Sum_probs=21.6
Q ss_pred HHHHHHHcccC--------CCchhHHHHHHhhh
Q 027619 91 AFKDLMAADWG--------ELPASVIHDAKSAL 115 (221)
Q Consensus 91 afKdLmAasW~--------elp~svv~~ak~al 115 (221)
.||.....+|+ .+|+..-+.+|..|
T Consensus 39 ~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~l 71 (77)
T PF03810_consen 39 LLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQL 71 (77)
T ss_dssp HHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCchhhccCCCCCCHHHHHHHHHHH
Confidence 58999999999 89999888888765
No 65
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=22.14 E-value=3.2e+02 Score=20.45 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=46.0
Q ss_pred HHHHHcccCCCchhHHH------HHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc--------h
Q 027619 93 KDLMAADWGELPASVIH------DAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIG--------L 158 (221)
Q Consensus 93 KdLmAasW~elp~svv~------~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgGiL~~LrmeiDDl~G--------l 158 (221)
...+...|.+|-..-.. ...+.|.. +|. .=..|++.+=.......+-..-|..|+.+|+.|-- +
T Consensus 27 ~~~~~~~e~~L~~~e~~l~~~~~~f~~flke-n~~-k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 27 EEQLKQREEELEKKEQELEEDVIKFDKFLKE-NEA-KRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666544332 22333333 222 23456666666666666666666666666665542 2
Q ss_pred hHHHHHHHHHhhcCC
Q 027619 159 SVYQRYATYLDAFGP 173 (221)
Q Consensus 159 s~y~rY~~YLdsFgp 173 (221)
..|+.|-.||+.+=|
T Consensus 105 ~~~~~Y~~fL~~v~~ 119 (126)
T PF13863_consen 105 EEYKKYEEFLEKVVP 119 (126)
T ss_pred HHHHHHHHHHHHhcc
Confidence 289999999988755
No 66
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=22.09 E-value=2.4e+02 Score=24.14 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=71.2
Q ss_pred HHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchh----HHHHHHHH
Q 027619 92 FKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLS----VYQRYATY 167 (221)
Q Consensus 92 fKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgGiL~~LrmeiDDl~Gls----~y~rY~~Y 167 (221)
+.+.+|.-|- -+.++-|++..+-.-||- ...+..-+++....|++|=-+..|+--|+-|.-+- .+....+|
T Consensus 40 ~REg~A~Glm---~~f~~l~e~v~~l~idd~--~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~ 114 (190)
T PF05266_consen 40 LREGMAVGLM---VTFANLAEKVKKLQIDDS--RSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKK 114 (190)
T ss_pred hhhHHHHHHH---HHHHHHHHHHHHcccCCc--HHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4445555443 245555666655566663 67788888889999999988888888888887665 67777888
Q ss_pred HhhcCCChhHHHHHHHHh---hhhhhhhhhhh
Q 027619 168 LDAFGPDESYLRKKVETE---LGSKMIFLKMR 196 (221)
Q Consensus 168 LdsFgpdE~yLrKKVE~E---LGtkmI~LKmR 196 (221)
++.--+++..++++.|.+ |-.|+..||..
T Consensus 115 le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 115 LEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 888878877777777764 45566666654
No 67
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=21.90 E-value=76 Score=27.30 Aligned_cols=27 Identities=19% Similarity=0.497 Sum_probs=24.6
Q ss_pred HHHHhhhhhhccchhHHHHHHHHHhhc
Q 027619 145 IMNIKMEFDDEIGLSVYQRYATYLDAF 171 (221)
Q Consensus 145 L~~LrmeiDDl~Gls~y~rY~~YLdsF 171 (221)
|..||.+|.+.+|-...++|-.+|..|
T Consensus 11 l~~lk~~l~~~LG~~~~~~Y~~~l~~f 37 (252)
T PF12767_consen 11 LEELKSQLQKRLGPDRWKKYFQSLKRF 37 (252)
T ss_pred HHHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 678999999999999999999999876
No 68
>PRK07942 DNA polymerase III subunit epsilon; Provisional
Probab=21.78 E-value=1.7e+02 Score=24.82 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhccchh--HH----HHHHHHHhhcCCC
Q 027619 124 GQEVLKNVFSAAEAVEEFIGIIMNI-KMEFDDEIGLS--VY----QRYATYLDAFGPD 174 (221)
Q Consensus 124 GqeaLknvfrAAeAvEeFgGiL~~L-rmeiDDl~Gls--~y----~rY~~YLdsFgpd 174 (221)
-|.|+.|+.-.|+-..++-...-.| +|.+++|+.+. .+ ..+.+||.+-|.+
T Consensus 159 aH~Al~Da~ata~l~~~l~~~~~~l~~~~~~~l~~~q~~~~~~~~~~~~~~~~~~~~~ 216 (232)
T PRK07942 159 AHEATADALAAARVAWALARRFPELAALSPAELHELQAVWYAEQAASFQAYLRRKGRP 216 (232)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4889999988888888877766666 88888988877 22 2466777776643
No 69
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=21.63 E-value=2.7e+02 Score=26.16 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=63.9
Q ss_pred hHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhhhccchhHHHHHHHHHhhcCCChhHHHHHHH
Q 027619 106 SVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFI--GIIMNIKMEFDDEIGLSVYQRYATYLDAFGPDESYLRKKVE 183 (221)
Q Consensus 106 svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFg--GiL~~LrmeiDDl~Gls~y~rY~~YLdsFgpdE~yLrKKVE 183 (221)
+++++++..+++++ |...-|.++.-| +| |.|..|..+|-++ +.=+| -.||.-=|-+|+++|
T Consensus 7 ~~~~~~~~~i~~~~-~~~~l~~~r~~~--------lgkkg~l~~~~~~l~~l---~~eer-----~~~G~~~n~~k~~~~ 69 (339)
T PRK00488 7 ELVEEALAAIAAAS-DLEALEALRVKY--------LGKKGELTELLKGLGKL---PPEER-----KEAGALINELKQAIE 69 (339)
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHH--------hCCchHHHHHHHHHhcC---CHHHH-----HHHHHHHHHHHHHHH
Confidence 45677777787755 344444444322 33 7888888777765 43333 245555677899999
Q ss_pred Hhhhhhhhhhhhhh--cCCCCCcceeEEeeccccccc
Q 027619 184 TELGSKMIFLKMRC--AGLGSEWGKVFYYGCQCHCGI 218 (221)
Q Consensus 184 ~ELGtkmI~LKmRc--sGlgseWGKVtllGTSg~sgs 218 (221)
..+..+.-.||..- .-+-+||=+||+-|.+-..|+
T Consensus 70 ~~~~~~~~~l~~~~~~~~l~~e~~d~t~p~~~~~~G~ 106 (339)
T PRK00488 70 AALEERKEELEAAALNARLAAETIDVTLPGRRIELGS 106 (339)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCC
Confidence 99888876665543 568889999999997655565
No 70
>PF05960 DUF885: Bacterial protein of unknown function (DUF885); InterPro: IPR010281 This family consists of hypothetical bacterial proteins.; PDB: 3O0Y_B 3U24_A 3IUK_A.
Probab=21.53 E-value=5.2e+02 Score=23.91 Aligned_cols=82 Identities=21% Similarity=0.358 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhhhhccchh-------HHHHHHHHHhh--cCCChhHHHHHHHHhh-
Q 027619 122 KAGQEVLKNVFSAAE-----AVEEFIGIIMNIKMEFDDEIGLS-------VYQRYATYLDA--FGPDESYLRKKVETEL- 186 (221)
Q Consensus 122 kAGqeaLknvfrAAe-----AvEeFgGiL~~LrmeiDDl~Gls-------~y~rY~~YLds--FgpdE~yLrKKVE~EL- 186 (221)
...++..+.+-.|.+ |.++|-..|.++..--.+..|++ .|++...+--. .-|+|. .+.-+.|+
T Consensus 177 ~~~~~l~~~~~~ai~~~v~pA~~~~~~~L~~~~~~~~~~~G~~~~~~G~~~Y~~~l~~~t~~~~s~~ei--~~~g~~e~~ 254 (549)
T PF05960_consen 177 EQKEALIAQAREAIEEYVIPAYERLRDFLESEYLPAANSSGLSDLPNGKEYYERLLRYYTTTDMSPEEI--HELGLAEVA 254 (549)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCCSHHSGCGSTTHHHHHHHHHHHHHSSSS-HHHH--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccCCCcHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHH
Confidence 344455556666666 88888888888777654444444 77777666554 456664 45555555
Q ss_pred --hhhhhhhhhhhcCCCCCcce
Q 027619 187 --GSKMIFLKMRCAGLGSEWGK 206 (221)
Q Consensus 187 --GtkmI~LKmRcsGlgseWGK 206 (221)
-..|..|..+ .|.+..|+.
T Consensus 255 ~~~~em~~~~~~-~g~~~~~~~ 275 (549)
T PF05960_consen 255 RIRAEMQALARE-IGFDGDWQE 275 (549)
T ss_dssp HHHHHHHHHHHH-HCTTCHHHH
T ss_pred HHHHHHHHHHHh-cCCCCCHHH
Confidence 6677888433 365545543
No 71
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO). This domain is found exclusively in the metazoa.
Probab=21.41 E-value=1.4e+02 Score=26.61 Aligned_cols=75 Identities=17% Similarity=0.320 Sum_probs=53.9
Q ss_pred CcCCcccccccccccccccCCCCCCCCCHHHHHHHHHHHH--cccCCCch-hHHHHHHhhhcccC--CchhHHHHHHHHH
Q 027619 58 DCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMA--ADWGELPA-SVIHDAKSALSRNN--DDKAGQEVLKNVF 132 (221)
Q Consensus 58 d~~~~~s~~~~~~R~fS~d~~hlP~i~Dpei~~afKdLmA--asW~elp~-svv~~ak~alSk~t--dDkAGqeaLknvf 132 (221)
-|....+ .+---|.|.++..++|.| --+-..||||-. -.|..|++ .+.--+.++++.|+ .--.=-+|+..||
T Consensus 106 ~cl~aLa-alRhakWFq~~a~~l~s~--~~viRIlrDl~~R~p~w~~L~~W~leLL~~~~i~~~~~~~~l~~g~a~RRvl 182 (248)
T PF07528_consen 106 KCLSALA-ALRHAKWFQARANGLQSC--VIVIRILRDLRQRVPTWQPLSSWALELLVEKAISNNSSRQPLSPGDAFRRVL 182 (248)
T ss_pred HHHHHHH-HHHHhHHHHHHhccCCCc--ceehhhHHHHHHhCCCCCCCChhHHHHHHHHHeeeCCCCCCCChHHHHHHHH
Confidence 3444443 344557899999999987 567889999965 46999999 56668999999443 3333348888888
Q ss_pred HHH
Q 027619 133 SAA 135 (221)
Q Consensus 133 rAA 135 (221)
.+-
T Consensus 183 e~l 185 (248)
T PF07528_consen 183 ECL 185 (248)
T ss_pred HHH
Confidence 764
No 72
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=21.35 E-value=5.4e+02 Score=22.23 Aligned_cols=91 Identities=23% Similarity=0.378 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-------chh
Q 027619 87 EIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEI-------GLS 159 (221)
Q Consensus 87 ei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgGiL~~LrmeiDDl~-------Gls 159 (221)
|++..+.+|+- ||. +..+|+... .+...|.|..-.+-+.+|-.|--.|..+|..+-||= +.+
T Consensus 8 ~Ly~~~~ell~-----lp~-----tq~al~~~~-~k~ve~lLd~sL~LLD~c~~~rd~ll~lKe~v~eLqsalRRr~~~~ 76 (231)
T PF03087_consen 8 DLYECLEELLQ-----LPS-----TQQALSHHQ-EKWVEELLDGSLRLLDACGTFRDALLQLKEHVQELQSALRRRDDGS 76 (231)
T ss_pred HHHHHHHHHHc-----CCH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 45566666663 554 566777777 889999999999999999999999999999988874 122
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHhhhhhhhhhhhh
Q 027619 160 VYQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMR 196 (221)
Q Consensus 160 ~y~rY~~YLdsFgpdE~yLrKKVE~ELGtkmI~LKmR 196 (221)
.-.+-.+|+.+ |||+..|+-..+--||.-
T Consensus 77 ~~~~i~sy~~~--------rKk~kK~i~K~~~~lk~~ 105 (231)
T PF03087_consen 77 IESEIASYIRS--------RKKAKKEIAKLLRSLKRM 105 (231)
T ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHHHhh
Confidence 34455566554 999999988776666643
No 73
>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A.
Probab=21.03 E-value=1.3e+02 Score=24.29 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=25.3
Q ss_pred CCCchhHHHHHHhhhcccCCchhHHHHHHHH
Q 027619 101 GELPASVIHDAKSALSRNNDDKAGQEVLKNV 131 (221)
Q Consensus 101 ~elp~svv~~ak~alSk~tdDkAGqeaLknv 131 (221)
.++|+.+++.++.+|-+...+..|+++|+..
T Consensus 200 ~~~~~~~~~~l~~al~~~~~~~~~~~~l~~~ 230 (243)
T PF12974_consen 200 PDLPPELRQRLRDALLSLSKDPEGKAILDAF 230 (243)
T ss_dssp TTS-HHHHHHHHHHHHHTTSSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHcCCCChhhHHHHHhc
Confidence 4588999999999999988888898888754
No 74
>PF03136 Pup_ligase: Pup-ligase protein; InterPro: IPR004347 Pupylation is a novel protein modification system found in some bacteria []. This entry represents two related groups of proteins involved in this system. Pup ligases, such as PafA, conjugate the prokaryotic ubiquitin-like protein Pup to lysine residues in target proteins, marking them for degradation []. Pup deamidases, such as PafD, catalyse the deamidation of the Pup C-terminal glutamine to glutamate, thereby rendering the protein competent for conjugation []. It has been suggested that proteins in this entry are related to gamma-glutamyl-cysteine synthetases []. ; GO: 0010498 proteasomal protein catabolic process, 0019941 modification-dependent protein catabolic process
Probab=20.92 E-value=34 Score=33.20 Aligned_cols=75 Identities=28% Similarity=0.375 Sum_probs=49.5
Q ss_pred cccccccccCCCCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHH-HHHHH
Q 027619 68 GCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEF-IGIIM 146 (221)
Q Consensus 68 ~~~R~fS~d~~hlP~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeF-gGiL~ 146 (221)
|--|.|- |-+| |+.+-||..+.+.- ++ -|+||..++...-+.|+....- ||.+.
T Consensus 71 NGaRlYv-D~aH-PEYsTPEc~~~~d~-v~----------------------~DrAGe~i~~~aa~~a~~~~~~~~~~v~ 125 (444)
T PF03136_consen 71 NGARLYV-DHAH-PEYSTPECDSPRDL-VA----------------------YDRAGERIMQDAAREAEQRLGEEGGEVH 125 (444)
T ss_pred CcceEee-cCCC-cCccCcccCCHHHH-HH----------------------HHHHHHHHHHHHHHHHHHhhhccCcceE
Confidence 3357777 5555 99999998776532 22 3799999998776666554332 24555
Q ss_pred HHhhhhhhccchhHHHHHHHHHhhcCCChhHHH
Q 027619 147 NIKMEFDDEIGLSVYQRYATYLDAFGPDESYLR 179 (221)
Q Consensus 147 ~LrmeiDDl~Gls~y~rY~~YLdsFgpdE~yLr 179 (221)
=+|.-.|- -| .|||-+||||=
T Consensus 126 l~KNN~D~-~G-----------~SyG~HENYLv 146 (444)
T PF03136_consen 126 LYKNNVDS-KG-----------NSYGCHENYLV 146 (444)
T ss_pred Eeeccccc-cc-----------cccccccceEE
Confidence 55555543 34 58999999983
No 75
>PRK13910 DNA glycosylase MutY; Provisional
Probab=20.57 E-value=1.5e+02 Score=26.92 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=42.4
Q ss_pred HHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhccchh
Q 027619 91 AFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAV-EEFIGIIMNIKMEFDDEIGLS 159 (221)
Q Consensus 91 afKdLmAa--sW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAv-EeFgGiL~~LrmeiDDl~Gls 159 (221)
.|..+|+. +|.+|-..-++++++.++..+=- . --+|..++|+.+ |+++|.+-..+.+|-.|=|+.
T Consensus 14 yy~rf~~~fPt~e~La~a~~~el~~~~~glGyy---~-RAr~L~~~A~~i~~~~~g~~P~~~~~L~~LpGIG 81 (289)
T PRK13910 14 FYSPFLEAFPTLKDLANAPLEEVLLLWRGLGYY---S-RAKNLKKSAEICVKEHHSQLPNDYQSLLKLPGIG 81 (289)
T ss_pred HHHHHHHHCCCHHHHHCCCHHHHHHHHHcCCcH---H-HHHHHHHHHHHHHHHhCCCCChhHHHHHhCCCCC
Confidence 45555543 44444444566677776664432 1 256899999876 688998877777777777776
No 76
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=20.39 E-value=5.9e+02 Score=25.20 Aligned_cols=67 Identities=21% Similarity=0.400 Sum_probs=41.3
Q ss_pred CchhHHHHHHhhhcccCCchhHHHHHHHHHH-------------HHHHHHHHHHHHHHHhh--------hhhhccchh--
Q 027619 103 LPASVIHDAKSALSRNNDDKAGQEVLKNVFS-------------AAEAVEEFIGIIMNIKM--------EFDDEIGLS-- 159 (221)
Q Consensus 103 lp~svv~~ak~alSk~tdDkAGqeaLknvfr-------------AAeAvEeFgGiL~~Lrm--------eiDDl~Gls-- 159 (221)
-|+.+ .++-+.+. -|.+.++++|+..-+ .++++++.-..|..+.. ++-|..|+|
T Consensus 505 ~p~~~-~~~~~~l~--~~~~~~~~~l~~l~~~g~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~g~sRK 581 (614)
T PRK10512 505 EPWWV-RDLAKETG--TDEQAMRLTLRQAAQQGIITAIVKDRYYRNDRIVQFANMIRELDQECGSTCAADFRDRLGVGRK 581 (614)
T ss_pred CCCCH-HHHHHHhC--CCHHHHHHHHHHHHHCCCEEEecCCEEECHHHHHHHHHHHHHHHhhCCcEeHHHHHHHhCccHH
Confidence 45444 44444443 456667888877666 56677666665555533 355788888
Q ss_pred HHHHHHHHHhhcC
Q 027619 160 VYQRYATYLDAFG 172 (221)
Q Consensus 160 ~y~rY~~YLdsFg 172 (221)
.=-=|..|||.+|
T Consensus 582 ~~i~lLE~~D~~~ 594 (614)
T PRK10512 582 LAIQILEYFDRIG 594 (614)
T ss_pred HHHHHHHHhccCC
Confidence 2234678888887
No 77
>PF09957 DUF2191: Uncharacterized protein conserved in bacteria (DUF2191); InterPro: IPR019239 This entry, found in various hypothetical prokaryotic proteins, has no known function.
Probab=20.16 E-value=2.3e+02 Score=19.33 Aligned_cols=32 Identities=13% Similarity=0.282 Sum_probs=24.4
Q ss_pred CCchhHHHHHHhhhcccCCchhHHHHHHHHHH
Q 027619 102 ELPASVIHDAKSALSRNNDDKAGQEVLKNVFS 133 (221)
Q Consensus 102 elp~svv~~ak~alSk~tdDkAGqeaLknvfr 133 (221)
+|||.++.+|...-.-.|...+=.+||+...+
T Consensus 6 ~iDd~Ll~eA~~l~g~~tk~~~V~~ALr~~i~ 37 (47)
T PF09957_consen 6 DIDDELLAEAMRLTGTKTKKEAVNEALRELIR 37 (47)
T ss_pred eeCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 58999999998887766776666777766544
No 78
>PF13852 DUF4197: Protein of unknown function (DUF4197)
Probab=20.08 E-value=5e+02 Score=22.55 Aligned_cols=93 Identities=26% Similarity=0.374 Sum_probs=55.7
Q ss_pred CchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHH-HHHHHHHHH-HH-hhhhhhccchhHHHHHHHHHhhcCCCh---h
Q 027619 103 LPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEA-VEEFIGIIM-NI-KMEFDDEIGLSVYQRYATYLDAFGPDE---S 176 (221)
Q Consensus 103 lp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeA-vEeFgGiL~-~L-rmeiDDl~Gls~y~rY~~YLdsFgpdE---~ 176 (221)
||+. +..+.+.|.+..-+..=.+.....=||||+ +.+-.-|++ ++ .|.++|-.++ | .|+|- .
T Consensus 44 lP~~-l~~~~~~Lr~~G~~~~~d~l~~smNrAAe~A~~~A~~if~~AI~~Ms~~DA~~I---------L--~G~d~AAT~ 111 (202)
T PF13852_consen 44 LPEE-LQKVESTLRKIGLGSQVDDLELSMNRAAEAAVPEAAPIFVDAIKSMSIQDAKGI---------L--NGGDDAATQ 111 (202)
T ss_pred CCHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHH---------h--cCCCcHHHH
Confidence 6665 457888888753333333333445577764 344444333 33 3777786655 2 25443 5
Q ss_pred HHHHHHHHhhhhhhhh---hhhhhcCCCCCccee
Q 027619 177 YLRKKVETELGSKMIF---LKMRCAGLGSEWGKV 207 (221)
Q Consensus 177 yLrKKVE~ELGtkmI~---LKmRcsGlgseWGKV 207 (221)
|||+|-..+|-.+|.- =.|+-.|....|.++
T Consensus 112 ylr~~t~~~L~~~f~PiV~~~l~~~g~~~~~~~l 145 (202)
T PF13852_consen 112 YLRRKTSAQLAEAFRPIVKKALEKVGATQYYNQL 145 (202)
T ss_pred HHHHhhHHHHHHHhccHHHHHHHHhCHHHHHHHH
Confidence 8999998888888743 356667777666654
Done!