Query 027619
Match_columns 221
No_of_seqs 17 out of 19
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 21:32:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027619.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027619hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bwv_S Rubisco, protein (ribul 61.5 5.9 0.0002 32.0 3.1 31 71-101 2-32 (138)
2 1svd_M Ribulose bisphosphate c 61.4 5.4 0.00019 30.9 2.8 31 70-101 10-40 (110)
3 1rbl_M Ribulose 1,5 bisphospha 59.7 6.5 0.00022 30.4 3.0 30 70-100 8-37 (109)
4 1wdd_S Ribulose bisphosphate c 59.3 5.9 0.0002 31.6 2.8 29 71-100 10-38 (128)
5 1bxn_I Rubisco, protein (ribul 58.7 6.3 0.00022 31.8 2.9 30 71-100 2-31 (139)
6 1gk8_I Ribulose bisphosphate c 54.9 7.6 0.00026 31.4 2.8 30 71-101 10-39 (140)
7 4f0h_B Ribulose bisphosphate c 50.2 12 0.0004 30.3 3.1 31 71-101 2-32 (138)
8 2rq5_A Protein jumonji; develo 39.1 17 0.00058 27.9 2.4 56 130-185 43-111 (121)
9 3zxw_B Ribulose bisphosphate c 38.5 17 0.00058 28.5 2.3 48 71-119 8-81 (118)
10 1syy_A Ribonucleoside-diphosph 37.9 1.9E+02 0.0066 24.7 10.5 95 79-175 30-138 (346)
11 3r84_A Mediator of RNA polymer 37.3 19 0.00064 27.0 2.3 48 109-158 22-76 (86)
12 3mjo_A Ribonucleotide reductas 35.7 1.7E+02 0.0059 24.6 8.3 54 81-137 21-74 (296)
13 1ka2_A M32 carboxypeptidase; h 34.2 30 0.001 32.3 3.7 63 102-175 99-167 (499)
14 1deq_A Fibrinogen (alpha chain 33.4 46 0.0016 30.9 4.6 32 162-194 109-140 (390)
15 2r9i_A Putative phage capsid p 31.4 68 0.0023 26.0 4.9 45 92-148 6-50 (141)
16 1wnd_A Putative betaine aldehy 30.9 24 0.00083 31.7 2.4 46 75-120 49-100 (495)
17 3lns_A Benzaldehyde dehydrogen 30.9 69 0.0024 28.2 5.2 50 74-123 16-71 (457)
18 1h6g_A Alpha-1 catenin; adhesi 29.9 62 0.0021 26.9 4.5 49 82-130 186-237 (256)
19 1r42_A Angiotensin I convertin 28.5 2.2E+02 0.0077 25.9 8.3 92 82-175 87-211 (615)
20 4flb_A Regulation of nuclear P 27.4 26 0.00088 25.7 1.6 35 83-118 94-131 (132)
21 3iwj_A Putative aminoaldehyde 26.5 1.1E+02 0.0038 27.3 5.9 74 75-148 34-128 (503)
22 3kxa_A NGO0477 protein, putati 25.7 1.3E+02 0.0043 22.4 5.2 59 127-185 55-134 (141)
23 3n37_A Ribonucleoside-diphosph 25.5 3.1E+02 0.011 23.3 9.4 52 81-135 12-63 (319)
24 3fsp_A A/G-specific adenine gl 25.5 1.1E+02 0.0038 26.1 5.4 55 79-133 7-66 (369)
25 2zzv_A ABC transporter, solute 25.2 86 0.0029 26.0 4.6 23 160-188 337-359 (361)
26 2guz_B Mitochondrial import in 25.1 46 0.0016 23.0 2.5 35 83-117 19-58 (65)
27 3fhf_A Mjogg, N-glycosylase/DN 24.6 1.7E+02 0.0058 24.0 6.2 50 83-132 17-70 (214)
28 2epj_A Glutamate-1-semialdehyd 24.1 1.9E+02 0.0064 23.6 6.4 55 84-138 73-135 (434)
29 3zrg_A Pexrd2, pexrd2 family s 22.9 75 0.0026 23.2 3.3 28 128-169 32-59 (67)
30 3id6_A NOP5, PRE mRNA splicing 22.0 1.5E+02 0.0051 25.6 5.6 64 78-141 167-243 (268)
31 2w4s_A Ankyrin-repeat protein; 21.8 31 0.0011 26.8 1.2 44 103-146 6-56 (113)
32 3dhz_A Ribonucleotide reductas 21.7 3.8E+02 0.013 22.9 8.7 53 81-136 22-74 (329)
33 2lm1_A Lysine-specific demethy 21.6 58 0.002 23.4 2.5 47 130-179 45-103 (107)
34 3icx_A PRE mRNA splicing prote 21.6 2.8E+02 0.0096 23.9 7.2 45 102-146 71-115 (255)
35 3ros_A NAD-dependent aldehyde 21.0 1.6E+02 0.0054 26.3 5.8 48 76-123 16-69 (484)
36 3hq2_A Bacillus subtilis M32 c 20.9 68 0.0023 30.1 3.4 63 102-175 97-165 (501)
37 2es4_D Lipase chaperone; prote 20.5 2.8E+02 0.0094 24.4 7.1 38 83-120 80-117 (332)
38 1uze_A Angiotensin converting 20.5 3.5E+02 0.012 24.7 8.0 54 126-184 140-199 (589)
39 2plg_A TLL0839 protein; hypoth 20.3 13 0.00045 30.3 -1.3 57 87-144 87-156 (163)
40 2bsq_E FITA, trafficking prote 20.2 1.3E+02 0.0045 21.5 4.2 41 85-125 9-49 (77)
No 1
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=61.46 E-value=5.9 Score=31.96 Aligned_cols=31 Identities=13% Similarity=0.326 Sum_probs=26.5
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 027619 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (221)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW~ 101 (221)
|.--+..+.||+++|.+|.+-+.-|++-.|.
T Consensus 2 ~~~~etfSyLP~ltdeqI~kQI~Yll~qGw~ 32 (138)
T 1bwv_S 2 RITQGTFSFLPDLTDEQIKKQIDYMISKKLA 32 (138)
T ss_dssp CCCCSTTTTSCCCCHHHHHHHHHHHHHTTCE
T ss_pred ceecceeccCCCCCHHHHHHHHHHHHHCCCe
Confidence 4445678999999999999999999998773
No 2
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=61.36 E-value=5.4 Score=30.89 Aligned_cols=31 Identities=16% Similarity=0.414 Sum_probs=26.4
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 027619 70 NRSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (221)
Q Consensus 70 ~R~fS~d~~hlP~i~Dpei~~afKdLmAasW~ 101 (221)
.|.|- +.+.||+++|.+|.+-+.-|++-.|.
T Consensus 10 ~~~~e-tfSyLP~lt~eqI~kQV~Yll~qGw~ 40 (110)
T 1svd_M 10 SLKYE-TFSYLPPMNAERIRAQIKYAIAQGWS 40 (110)
T ss_dssp CCCCS-TTTTSCCCCHHHHHHHHHHHHHTTCE
T ss_pred Ccccc-ccccCCCCCHHHHHHHHHHHHHCCCe
Confidence 45554 79999999999999999999987763
No 3
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=59.66 E-value=6.5 Score=30.41 Aligned_cols=30 Identities=17% Similarity=0.440 Sum_probs=25.9
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHccc
Q 027619 70 NRSFSEDVAHMPVIRDPEIQRAFKDLMAADW 100 (221)
Q Consensus 70 ~R~fS~d~~hlP~i~Dpei~~afKdLmAasW 100 (221)
.|.|- +.+.||+++|.+|.+-+.-|++-.|
T Consensus 8 ~~~~e-tfSyLP~lt~eqI~kQI~Yll~qGw 37 (109)
T 1rbl_M 8 ERRFE-TFSYLPPLSDRQIAAQIEYMIEQGF 37 (109)
T ss_dssp CCCCS-TTTTSSCCCHHHHHHHHHHHHHHTC
T ss_pred ccccc-ccccCCCCCHHHHHHHHHHHHHCCC
Confidence 45554 7999999999999999999998766
No 4
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=59.32 E-value=5.9 Score=31.60 Aligned_cols=29 Identities=14% Similarity=0.533 Sum_probs=25.0
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHccc
Q 027619 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADW 100 (221)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW 100 (221)
|.|- ..+.||+++|.+|.+-+..|++-.|
T Consensus 10 ~~~~-tfSyLP~lt~eqI~kQI~Yll~qGw 38 (128)
T 1wdd_S 10 KKFE-TLSYLPPLTVEDLLKQIEYLLRSKW 38 (128)
T ss_dssp CCCS-TTTTSSCCCHHHHHHHHHHHHHTTC
T ss_pred cccc-ccccCCCCCHHHHHHHHHHHHHCCC
Confidence 4454 6999999999999999999998665
No 5
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=58.68 E-value=6.3 Score=31.81 Aligned_cols=30 Identities=17% Similarity=0.448 Sum_probs=25.9
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHccc
Q 027619 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADW 100 (221)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW 100 (221)
|.--+..+.||+++|.+|.+-+.-|++-.|
T Consensus 2 ~~~~etfSyLP~ltdeqI~kQI~YlL~qGw 31 (139)
T 1bxn_I 2 RITQGTFSFLPELTDEQITKQLEYCLNQGW 31 (139)
T ss_dssp CCCCSBTTTSSCCCHHHHHHHHHHHHHHTC
T ss_pred ceecceeccCCCCCHHHHHHHHHHHHHCCC
Confidence 444567899999999999999999999776
No 6
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=54.94 E-value=7.6 Score=31.45 Aligned_cols=30 Identities=20% Similarity=0.464 Sum_probs=26.0
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 027619 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (221)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW~ 101 (221)
|.|- +.+.||+++|.+|.+-+.-|++-.|.
T Consensus 10 ~~~e-tfSyLP~lt~eqI~kQI~YlL~qGw~ 39 (140)
T 1gk8_I 10 KMFE-TFSYLPPLTDEQIAAQVDYIVANGWI 39 (140)
T ss_dssp CCCS-TTTTSSCCCHHHHHHHHHHHHHTTCE
T ss_pred ceec-ccccCCCCCHHHHHHHHHHHHHCCCE
Confidence 4454 79999999999999999999988774
No 7
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=50.18 E-value=12 Score=30.31 Aligned_cols=31 Identities=13% Similarity=0.326 Sum_probs=26.0
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHcccC
Q 027619 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADWG 101 (221)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW~ 101 (221)
|.=-+..+-||+++|.+|.+-+.-|++-.|.
T Consensus 2 ~~t~~tfSyLP~ltd~qI~kQI~YlL~qGw~ 32 (138)
T 4f0h_B 2 RITQGTFSFLPDLTDEQIKKQIDYMISKKLA 32 (138)
T ss_dssp CCCCSTTTTSCCCCHHHHHHHHHHHHHTTCE
T ss_pred cccccccccCCCCCHHHHHHHHHHHHhCCCE
Confidence 3344677899999999999999999998773
No 8
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=39.07 E-value=17 Score=27.92 Aligned_cols=56 Identities=14% Similarity=0.261 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh----hhhhhccchh---------HHHHHHHHHhhcCCChhHHHHHHHHh
Q 027619 130 NVFSAAEAVEEFIGIIMNIK----MEFDDEIGLS---------VYQRYATYLDAFGPDESYLRKKVETE 185 (221)
Q Consensus 130 nvfrAAeAvEeFgGiL~~Lr----meiDDl~Gls---------~y~rY~~YLdsFgpdE~yLrKKVE~E 185 (221)
|.|+-=.+|.++||.-.-.+ .+|-+-+|++ .=+-|.+||..|+-...=-|.++|.|
T Consensus 43 DL~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~~~~~e~~~l~~~ 111 (121)
T 2rq5_A 43 DLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLEKE 111 (121)
T ss_dssp CHHHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHHCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHCcCHHHHhhHHHH
Confidence 78888899999999322211 2344444443 22336666666653222224444444
No 9
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=38.46 E-value=17 Score=28.50 Aligned_cols=48 Identities=21% Similarity=0.457 Sum_probs=33.1
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHccc-----------------C--CCc-------hhHHHHHHhhhcccC
Q 027619 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADW-----------------G--ELP-------ASVIHDAKSALSRNN 119 (221)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW-----------------~--elp-------~svv~~ak~alSk~t 119 (221)
|.| |+.+-||+++|.+|.+-..-|++-.| + .|| +.|+.+++.|++...
T Consensus 8 kkf-eTfSyLP~Lt~eqI~kQV~yll~qGw~~~lE~~d~~~~~~~yW~mWklPmf~~~d~~~Vl~Ele~C~k~~p 81 (118)
T 3zxw_B 8 RRY-ETFSYLPPLSDAQIARQIQYAIDQGYHPCVEFNETSNAEIRYWTMWKLPLFNCTNAQDVLNEVQQCRSEYP 81 (118)
T ss_dssp -------CCSCCCCHHHHHHHHHHHHHHTCEEEEEEESCCCTTCCCCEEESSCCTTCCCHHHHHHHHHHHHHHCT
T ss_pred ccc-cccccCCCCCHHHHHHHHHHHHhCCCeeEEEeccCCCcccCEEeecccCCcCCCCHHHHHHHHHHHHHHCC
Confidence 556 58999999999999999999998655 3 565 567777777766543
No 10
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A
Probab=37.88 E-value=1.9e+02 Score=24.72 Aligned_cols=95 Identities=17% Similarity=0.172 Sum_probs=59.2
Q ss_pred CCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhc-ccCCchhHHHHHHHHHHHHHHHHHHHH-HH-HHHhhhhhhc
Q 027619 79 HMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALS-RNNDDKAGQEVLKNVFSAAEAVEEFIG-II-MNIKMEFDDE 155 (221)
Q Consensus 79 hlP~i~Dpei~~afKdLmAasW~elp~svv~~ak~alS-k~tdDkAGqeaLknvfrAAeAvEeFgG-iL-~~LrmeiDDl 155 (221)
.+-.|+-|++.+..|...+.-|..=.=.+-+|.+.--+ +-+| .-|.++++++..=-+.+..=| .+ ..|...+.+-
T Consensus 30 ~~~p~ky~~~~~ly~~~~~~fW~peEIdls~D~~dw~~~~Lt~--~Er~~~~~~l~~~~~~D~iv~~~~~~~l~~~v~~~ 107 (346)
T 1syy_A 30 QLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSDRLSE--DERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNP 107 (346)
T ss_dssp CCCSCCCHHHHHHHHHHHHTCCCGGGSCCHHHHHHHHSSCSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCCH
T ss_pred eecCCccHHHHHHHHHHHHcCCcHhhcchhhhHHHHhhccCCH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCcH
Confidence 46789999999999999999997544445566654422 3233 458999998876555444433 22 2233333321
Q ss_pred cc---hh-------HH-HHHHHHHhhcCCCh
Q 027619 156 IG---LS-------VY-QRYATYLDAFGPDE 175 (221)
Q Consensus 156 ~G---ls-------~y-~rY~~YLdsFgpdE 175 (221)
=. ++ .| +=|..+|++++.++
T Consensus 108 E~~~~l~~q~~~EaiHs~sYs~il~tl~~~~ 138 (346)
T 1syy_A 108 EARQYLLRQAFEEAVHTHTFLYICESLGLDE 138 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 11 11 34 34677899999886
No 11
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=37.25 E-value=19 Score=27.00 Aligned_cols=48 Identities=23% Similarity=0.383 Sum_probs=30.7
Q ss_pred HHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHH----HHhhh---hhhccch
Q 027619 109 HDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIM----NIKME---FDDEIGL 158 (221)
Q Consensus 109 ~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgGiL~----~Lrme---iDDl~Gl 158 (221)
..|-.++..-+..+.|-+++|..|. +++.+|...|. .||.| +||.+|-
T Consensus 22 ~~as~~i~tls~~k~~~~~~K~~F~--~~t~~fy~tL~~v~v~LrkEIk~LdEnig~ 76 (86)
T 3r84_A 22 QEASQVTFIFGELKRGNESVKPQFE--NHVKQFYERLDKSTTQLRKEIQLLDENVGT 76 (86)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTBTT
T ss_pred HHHHHHHHHhhcccCCcHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3444444444445555577777775 67889988774 57766 5777773
No 12
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A*
Probab=35.67 E-value=1.7e+02 Score=24.64 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHH
Q 027619 81 PVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEA 137 (221)
Q Consensus 81 P~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeA 137 (221)
-.|+||.+....|.+.+.-|..=.=.+-+|.+.- .+-| ..-|.++++++..--+
T Consensus 21 n~i~y~~~~~~y~k~~~~fW~peEI~ls~D~~dw-~~Ls--~~Er~~~~~~l~~~~~ 74 (296)
T 3mjo_A 21 NVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSW-NKMT--PQEQLATMRVFTGLTL 74 (296)
T ss_dssp TSCSCHHHHHHHHHHHHTCCCGGGSCGGGGHHHH-HHSC--HHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHcCCCHHHcChhccHHHH-HHCC--HHHHHHHHHHHHHHHH
Confidence 3689999999999999999974333344444322 1222 2458888888874333
No 13
>1ka2_A M32 carboxypeptidase; hexxh motif, M32 family, metallopeptidase; 2.20A {Pyrococcus furiosus} SCOP: d.92.1.5 PDB: 1k9x_A 1ka4_A
Probab=34.25 E-value=30 Score=32.28 Aligned_cols=63 Identities=17% Similarity=0.340 Sum_probs=45.4
Q ss_pred CCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHH------HHHHHhhhhhhccchhHHHHHHHHHhhcCCCh
Q 027619 102 ELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIG------IIMNIKMEFDDEIGLSVYQRYATYLDAFGPDE 175 (221)
Q Consensus 102 elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgG------iL~~LrmeiDDl~Gls~y~rY~~YLdsFgpdE 175 (221)
.||..++.+.-++-|+ -.++|+-|++-.-|.+ .|+.|+.|+-+..|-.. ..|-+-||.|+|+-
T Consensus 99 ~iP~~l~~~~~~~~s~----------~~~~W~~ar~~~Df~~f~p~L~~vv~l~re~A~~~~~~~-~~YDaLLd~yEpg~ 167 (499)
T 1ka2_A 99 AFPPEFIREVSETTSL----------ATKAWEEAKAKDDFSKFEPWLDKIISLAKRAAEYLGYEE-EPYDALLDLYEEGL 167 (499)
T ss_dssp HSCHHHHHHHHHHHHH----------HHHHHHHHHHTTCGGGTHHHHHHHHHHHHHHHHHHCCSS-CHHHHHHHHHSTTC
T ss_pred CCCHHHHHHHHHHHHH----------HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHhCCCC
Confidence 3566666555555444 3678999988777776 46777788877776656 67999999998864
No 14
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=33.40 E-value=46 Score=30.93 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=24.3
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHhhhhhhhhhh
Q 027619 162 QRYATYLDAFGPDESYLRKKVETELGSKMIFLK 194 (221)
Q Consensus 162 ~rY~~YLdsFgpdE~yLrKKVE~ELGtkmI~LK 194 (221)
.+|..|.+...-.=.|||+||++.|= .|-.|+
T Consensus 109 n~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq 140 (390)
T 1deq_A 109 NTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQ 140 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHH
Confidence 46777777777788999999999887 554444
No 15
>2r9i_A Putative phage capsid protein; putative phage capsid domain, protein structure initi structural genomics; 2.60A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=31.44 E-value=68 Score=26.04 Aligned_cols=45 Identities=40% Similarity=0.461 Sum_probs=31.3
Q ss_pred HHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027619 92 FKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNI 148 (221)
Q Consensus 92 fKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgGiL~~L 148 (221)
+|||+|.. +.+...+|.+-|.-|||-.-- .||+|||..-.|+..+
T Consensus 6 lkdllahr-----enlmdsakrarsaitddmdpa-------daaqavenvksiisei 50 (141)
T 2r9i_A 6 LKDLLAHR-----ENLMDSAKRARSAITDDMDPA-------DAAQAVENVKSIISEI 50 (141)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHCCTTSCHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHhhhccCCChH-------HHHHHHHHHHHHHHHH
Confidence 68888863 567788899999889886433 3566666666555444
No 16
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=30.88 E-value=24 Score=31.68 Aligned_cols=46 Identities=13% Similarity=0.319 Sum_probs=30.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCC
Q 027619 75 EDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNND 120 (221)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~ak~alSk~td 120 (221)
+-+.++|..+..++..|++..-++ .|..+|.. ++..+...|.++.|
T Consensus 49 ~~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ 100 (495)
T 1wnd_A 49 DVLLEIAEASAEQVDAAVRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQ 100 (495)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888776655 69999865 34444445554433
No 17
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=30.87 E-value=69 Score=28.16 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=29.9
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchh
Q 027619 74 SEDVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKA 123 (221)
Q Consensus 74 S~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~ak~alSk~tdDkA 123 (221)
++.+.++|..+..++..+++..-++ .|..+|.. ++..+...|.++.|+.+
T Consensus 16 ~~~i~~v~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela 71 (457)
T 3lns_A 16 DDDDKHMNYLSPAKIDSLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEALY 71 (457)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred CCeeeecCCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4678899999999999988877654 69999865 34455555555544433
No 18
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A
Probab=29.88 E-value=62 Score=26.92 Aligned_cols=49 Identities=6% Similarity=-0.014 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHcccCCCchhHHHHHHhh---hcccCCchhHHHHHHH
Q 027619 82 VIRDPEIQRAFKDLMAADWGELPASVIHDAKSA---LSRNNDDKAGQEVLKN 130 (221)
Q Consensus 82 ~i~Dpei~~afKdLmAasW~elp~svv~~ak~a---lSk~tdDkAGqeaLkn 130 (221)
.-.||+..+-+++-...==+.+.+.++++||.+ +++|.+|...|..+.+
T Consensus 186 ~~ed~~~~~~v~~a~~~L~~a~~p~mv~~ak~~~~~~a~np~d~~~~~~~~~ 237 (256)
T 1h6g_A 186 NYEPGVYTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFID 237 (256)
T ss_dssp TSCSSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSSCCCCCHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 445776655544431111112567899999998 7888888776766654
No 19
>1r42_A Angiotensin I converting enzyme 2; zinc metallopeptidase domain, Na open conformation, chloride ION binding site; HET: NAG; 2.20A {Homo sapiens} SCOP: d.92.1.5 PDB: 1r4l_A* 3sci_A 3scj_A 2ajf_A* 3kbh_A* 3d0g_A* 3d0h_A* 3d0i_A* 3sck_A 3scl_A
Probab=28.50 E-value=2.2e+02 Score=25.94 Aligned_cols=92 Identities=8% Similarity=0.065 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHHHHcccCCCch-------hHHHHHHhhhcccC-----C---------ch-------hHHHHHHHHHH
Q 027619 82 VIRDPEIQRAFKDLMAADWGELPA-------SVIHDAKSALSRNN-----D---------DK-------AGQEVLKNVFS 133 (221)
Q Consensus 82 ~i~Dpei~~afKdLmAasW~elp~-------svv~~ak~alSk~t-----d---------Dk-------AGqeaLknvfr 133 (221)
.+.||+++..|+.|-...=..+++ .++++.++..++++ + |. ...+.++.+|+
T Consensus 87 ~l~~~~~~~~l~~l~~~g~~~l~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~l~~~p~l~~~~~~s~d~~~R~~aW~ 166 (615)
T 1r42_A 87 EIQNLTVKLQLQALQQNGSSVLSEDKSKRLNTILNTMSTIYSTGKVCNPDNPQECLLLEPGLNEIMANSLDYNERLWAWE 166 (615)
T ss_dssp TCCCHHHHHHHHHHTCCGGGGSCHHHHHHHHHHHHHHHHHHHHCEEEETTEEEEEEETTTBHHHHHHHCCCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCeeccCCCcccccccchhHHHHHHhCCCHHHHHHHHH
Confidence 678999888888664431011344 56666666665543 1 11 12234477888
Q ss_pred HHHH-HH-HHHHH---HHHHhhhhhhccchhHHHHHHHHHhhcCCCh
Q 027619 134 AAEA-VE-EFIGI---IMNIKMEFDDEIGLSVYQRYATYLDAFGPDE 175 (221)
Q Consensus 134 AAeA-vE-eFgGi---L~~LrmeiDDl~Gls~y~rY~~YLdsFgpdE 175 (221)
++.. +. +|--+ ++.||.++-.+.|-.. .|-..++.|.|..
T Consensus 167 ~~r~~~~~~~~~~l~~~v~l~~e~A~~~G~~~--~~d~~~~~ye~~~ 211 (615)
T 1r42_A 167 SWRSEVGKQLRPLYEEYVVLKNEMARANHYED--YGDYWRGDYEVNG 211 (615)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHTTCSS--HHHHHHTTTCBCS
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHHHhhcccc
Confidence 8653 22 24443 4555777777776544 2333456666654
No 20
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=27.36 E-value=26 Score=25.66 Aligned_cols=35 Identities=23% Similarity=0.642 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHcccCC---CchhHHHHHHhhhccc
Q 027619 83 IRDPEIQRAFKDLMAADWGE---LPASVIHDAKSALSRN 118 (221)
Q Consensus 83 i~Dpei~~afKdLmAasW~e---lp~svv~~ak~alSk~ 118 (221)
+.||+.++.+..|+.+ |.+ .|+++++..+.+|+++
T Consensus 94 ~~~~~~~~kl~~ll~i-W~~r~vf~~~~i~~L~~~L~~s 131 (132)
T 4flb_A 94 VKDPSVSKSVERIFKI-WEDRNVYPEEMIVALREALSTT 131 (132)
T ss_dssp TCSTTTHHHHHHHHHH-HHHHTSSCHHHHHHHHHHHTSC
T ss_pred hCCHHHHHHHHHHHHH-hccCCCcCHHHHHHHHHHHhcc
Confidence 4678888888888875 654 8999999999988763
No 21
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=26.54 E-value=1.1e+02 Score=27.33 Aligned_cols=74 Identities=12% Similarity=0.262 Sum_probs=46.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHc-------ccCCCchh----HHHHHHhhhcccCCchhH----------HHHHHHHHH
Q 027619 75 EDVAHMPVIRDPEIQRAFKDLMAA-------DWGELPAS----VIHDAKSALSRNNDDKAG----------QEVLKNVFS 133 (221)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAa-------sW~elp~s----vv~~ak~alSk~tdDkAG----------qeaLknvfr 133 (221)
+-+.++|..+..++..|++..-++ .|..+|.. ++..+...|..+.|+.+- .|+..++.+
T Consensus 34 ~~i~~~~~~~~~~v~~av~~A~~A~~~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~ 113 (503)
T 3iwj_A 34 NIIGDIPAATKEDVDVAVAAAKTALTRNKGADWATASGAVRARYLRAIAAKVTEKKPELAKLESIDCGKPLDEAAWDIDD 113 (503)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHHHHGGGGTTTTSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHhhhcCCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 345667888888999888877664 79999865 455556666666555442 233445555
Q ss_pred HHHHHHHHHHHHHHH
Q 027619 134 AAEAVEEFIGIIMNI 148 (221)
Q Consensus 134 AAeAvEeFgGiL~~L 148 (221)
+++.++.|.+.+..+
T Consensus 114 ~~~~~~~~a~~~~~~ 128 (503)
T 3iwj_A 114 VAGCFEYYADLAEKL 128 (503)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555555555444
No 22
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=25.68 E-value=1.3e+02 Score=22.41 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-------hhhccchh--HHHHH------------HHHHhhcCCChhHHHHHHHHh
Q 027619 127 VLKNVFSAAEAVEEFIGIIMNIKME-------FDDEIGLS--VYQRY------------ATYLDAFGPDESYLRKKVETE 185 (221)
Q Consensus 127 aLknvfrAAeAvEeFgGiL~~Lrme-------iDDl~Gls--~y~rY------------~~YLdsFgpdE~yLrKKVE~E 185 (221)
.+..-+........||-.|..+|.+ +-+.+|+| .++|| .++.+.||-+-.+|-..+|.+
T Consensus 55 ~~~~~~~~~~~~~~~g~~L~~~R~~~glTq~elA~~lGis~s~is~~E~G~~~ps~~~l~~la~~lgv~~~~l~~~~~~~ 134 (141)
T 3kxa_A 55 RAAARIADKIALKAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRAAFERR 134 (141)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHTCSCCCHHHHHHHHHHHTCCHHHHHHHHGGG
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHHHHHhhhh
Confidence 3333333344456666677777654 55667776 33443 344555555555555544443
No 23
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
Probab=25.54 E-value=3.1e+02 Score=23.27 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHH
Q 027619 81 PVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAA 135 (221)
Q Consensus 81 P~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAA 135 (221)
-.|+||.+....|.+.+.-|..=.=.+-+|++.- .+-| ..-|.++++++..-
T Consensus 12 n~i~y~~~~~~y~~~~~~fW~peEi~ls~D~~dw-~~Lt--~~Er~~~~~~l~~~ 63 (319)
T 3n37_A 12 NKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAW-QTLT--VVEQQLTMRVFTGL 63 (319)
T ss_dssp TSCSCHHHHHHHHHHHHTCCCGGGSCGGGGHHHH-TTSC--HHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHcCCCHHhcChhhhHHHH-HhCC--HHHHHHHHHHHHHH
Confidence 3689999999999999999974333344554432 2222 34588899888743
No 24
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=25.49 E-value=1.1e+02 Score=26.08 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=40.3
Q ss_pred CCCCCCCHHHHHHHHHHHHcccCCCc-----hhHHHHHHhhhcccCCchhHHHHHHHHHH
Q 027619 79 HMPVIRDPEIQRAFKDLMAADWGELP-----ASVIHDAKSALSRNNDDKAGQEVLKNVFS 133 (221)
Q Consensus 79 hlP~i~Dpei~~afKdLmAasW~elp-----~svv~~ak~alSk~tdDkAGqeaLknvfr 133 (221)
.++.+...++.+.+-+.+..+-.++| +...--+--.|+.+|-+++...++.+.+.
T Consensus 7 ~~~~~~~~~~~~~l~~w~~~~~r~lpw~~~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~ 66 (369)
T 3fsp_A 7 ETERFPAREFQRDLLDWFARERRDLPWRKDRDPYKVWVSEVMLQQTRVETVIPYFEQFID 66 (369)
T ss_dssp ----CCHHHHHHHHHHHHHHHCCCCGGGSCCCHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 36778888999999999987766665 66666677779999988887777777663
No 25
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=25.20 E-value=86 Score=26.05 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHhhhh
Q 027619 160 VYQRYATYLDAFGPDESYLRKKVETELGS 188 (221)
Q Consensus 160 ~y~rY~~YLdsFgpdE~yLrKKVE~ELGt 188 (221)
.|+++.++++.++.-. +|++.|-
T Consensus 337 ~~~~~~~~~~~~~~~~------~~~~~~~ 359 (361)
T 2zzv_A 337 AFASQLEYMKGIGYVT------DEELKGL 359 (361)
T ss_dssp HHHHHHHHHHHTTCSC------TGGGTTC
T ss_pred HHHHHHHHHHHcCccc------chhhccC
Confidence 5666666666666432 6666553
No 26
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=25.12 E-value=46 Score=22.97 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHHcccCC--Cc---hhHHHHHHhhhcc
Q 027619 83 IRDPEIQRAFKDLMAADWGE--LP---ASVIHDAKSALSR 117 (221)
Q Consensus 83 i~Dpei~~afKdLmAasW~e--lp---~svv~~ak~alSk 117 (221)
.++.+|+++++.||..|=-+ -+ .+-|+.||..|.+
T Consensus 19 a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 19 LNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKW 58 (65)
T ss_dssp CSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56789999999999998765 55 5667777777754
No 27
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=24.59 E-value=1.7e+02 Score=23.97 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=36.5
Q ss_pred CCCHH----HHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHH
Q 027619 83 IRDPE----IQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVF 132 (221)
Q Consensus 83 i~Dpe----i~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvf 132 (221)
++||+ |++.+.+.-+--|..-++...--+--.||.+|.|+....|..+.|
T Consensus 17 ~~~~~~~~~i~~r~~ef~~~~~~~~~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~ 70 (214)
T 3fhf_A 17 LKNSEIKDIIDKRIQEFKSFKNKSNEEWFKELCFCILTANFTAEGGIRIQKEIG 70 (214)
T ss_dssp HHTSTHHHHHHHHHHHHHGGGGSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 35544 445555554444666667777778888999999999999999987
No 28
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=24.11 E-value=1.9e+02 Score=23.64 Aligned_cols=55 Identities=15% Similarity=0.214 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHccc-CCCchhHHHHHHhhhcccC--Cch-----hHHHHHHHHHHHHHHH
Q 027619 84 RDPEIQRAFKDLMAADW-GELPASVIHDAKSALSRNN--DDK-----AGQEVLKNVFSAAEAV 138 (221)
Q Consensus 84 ~Dpei~~afKdLmAasW-~elp~svv~~ak~alSk~t--dDk-----AGqeaLknvfrAAeAv 138 (221)
.+|+|.+|+++-+...+ ...+.....+..+.|.+-. .+. -|.||+..+.++|.+.
T Consensus 73 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~ 135 (434)
T 2epj_A 73 KHPRVLEAVEEALARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGY 135 (434)
T ss_dssp TCHHHHHHHHHHHHTCSCCSSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 68999999999887643 2335555555555554422 222 3999999999998764
No 29
>3zrg_A Pexrd2, pexrd2 family secreted RXLR effector peptide, PUT; protein binding, plant pathogen interactions; 1.75A {Phytophthora infestans}
Probab=22.91 E-value=75 Score=23.16 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHh
Q 027619 128 LKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSVYQRYATYLD 169 (221)
Q Consensus 128 LknvfrAAeAvEeFgGiL~~LrmeiDDl~Gls~y~rY~~YLd 169 (221)
++++-+.+.+.++|..+ .-|++|.+||+
T Consensus 32 ia~a~~s~~~L~~~mqT--------------~eY~Ky~~YlN 59 (67)
T 3zrg_A 32 IAAAANSARAMEKLGET--------------LKMKKLLRYLN 59 (67)
T ss_dssp HHHHHHCHHHHHHHHTC--------------HHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHhcC--------------HHHHHHHHHHH
Confidence 44555577777777653 25777777774
No 30
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=22.01 E-value=1.5e+02 Score=25.61 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=45.2
Q ss_pred CCCCCC----CCHHHHHHHHHHHHc-------ccC--CCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHH
Q 027619 78 AHMPVI----RDPEIQRAFKDLMAA-------DWG--ELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEF 141 (221)
Q Consensus 78 ~hlP~i----~Dpei~~afKdLmAa-------sW~--elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeF 141 (221)
.|+|++ +||..+-.+=.++.. +.. .||+.++..++.|-+.+.--.-..+-|.|+-.+|+-|.+.
T Consensus 167 ~hFPEL~kiV~d~~~Yak~V~~ig~r~~l~~~~l~~i~l~~~~~~~I~~aA~~SmG~~ise~DL~~I~~~a~~v~~L 243 (268)
T 3id6_A 167 IHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDL 243 (268)
T ss_dssp TTCTTHHHHCCCHHHHHHHHHHHCSTTSCCHHHHGGGTCCHHHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCccHHHhccCHHHHHHHHHHhCCcccCCcccHhhcCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 566664 677655544333321 122 3799999999988888777777778899999999988764
No 31
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A {Cryptosporidium parvum}
Probab=21.83 E-value=31 Score=26.82 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=29.2
Q ss_pred CchhHHHHHHhhhcccCC-------chhHHHHHHHHHHHHHHHHHHHHHHH
Q 027619 103 LPASVIHDAKSALSRNND-------DKAGQEVLKNVFSAAEAVEEFIGIIM 146 (221)
Q Consensus 103 lp~svv~~ak~alSk~td-------DkAGqeaLknvfrAAeAvEeFgGiL~ 146 (221)
+++.|+++.-..|..... +.-|.+...+.|...+++|.-||+.+
T Consensus 6 ~~~~va~~ia~~L~E~k~~li~RvV~~lG~~~~~~L~~eT~~IE~~GG~~t 56 (113)
T 2w4s_A 6 MESIVLNTIVTGLQEPKKEFIARVIKTIGSQRSLQLYENAMKVENSGGLLT 56 (113)
T ss_dssp HHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred hHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEC
Confidence 344444444444444333 34688999999999999999998655
No 32
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A
Probab=21.66 E-value=3.8e+02 Score=22.89 Aligned_cols=53 Identities=21% Similarity=0.192 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHH
Q 027619 81 PVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAE 136 (221)
Q Consensus 81 P~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAe 136 (221)
-.|+||.+....|.+.+.-|..=.=.+-+|++.- .+-| ..-|.++++++..--
T Consensus 22 n~i~y~~~~~~y~~~~~~fW~peEI~ls~D~~dw-~~Lt--~~Er~~~~~~l~~~~ 74 (329)
T 3dhz_A 22 NVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSW-NKMT--PQEQLATMRVFTGLT 74 (329)
T ss_dssp TSCSSHHHHHHHHHHHHTCCCGGGSCGGGGHHHH-HTSC--HHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHcCCCHhhcChhhhHHHH-HhCC--HHHHHHHHHHHHHHH
Confidence 3689999999999999999974333344444332 2222 345888998887433
No 33
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=21.59 E-value=58 Score=23.41 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHH----Hhhhhhhccchh--------HHHHHHHHHhhcCCChhHHH
Q 027619 130 NVFSAAEAVEEFIGIIMN----IKMEFDDEIGLS--------VYQRYATYLDAFGPDESYLR 179 (221)
Q Consensus 130 nvfrAAeAvEeFgGiL~~----LrmeiDDl~Gls--------~y~rY~~YLdsFgpdE~yLr 179 (221)
|.|+-=.+|.++||.-.- +=.+|-+-+|+. .=+-|.+||..| |.|++
T Consensus 45 dL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y---E~~~~ 103 (107)
T 2lm1_A 45 DLYTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF---EVYTS 103 (107)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH---HHHHT
T ss_pred cHHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH---HHHHh
Confidence 778888889999994321 122444555553 334588888877 45554
No 34
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=21.58 E-value=2.8e+02 Score=23.85 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=32.4
Q ss_pred CCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 027619 102 ELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIM 146 (221)
Q Consensus 102 elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgGiL~ 146 (221)
.+|+.++..+..+.+.+.--.-..+-|.|+..+|+-|.+..-.-.
T Consensus 71 ~l~~~~~~~i~~aa~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~ 115 (255)
T 3icx_A 71 GFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRR 115 (255)
T ss_dssp TCCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888887777776655545556679999999998887654333
No 35
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=21.04 E-value=1.6e+02 Score=26.34 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=33.3
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHc--ccCCCchh----HHHHHHhhhcccCCchh
Q 027619 76 DVAHMPVIRDPEIQRAFKDLMAA--DWGELPAS----VIHDAKSALSRNNDDKA 123 (221)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAa--sW~elp~s----vv~~ak~alSk~tdDkA 123 (221)
-+..+|..+..++..|++..-++ .|..+|.. ++..+...|.++.|+.+
T Consensus 16 ~i~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela 69 (484)
T 3ros_A 16 AFASYDNPTSKQIDEAINLAHALYKKWRHEEPASRAEILHDIANALKEHEDELA 69 (484)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHTHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45678888888888888776654 69999875 45555666666555544
No 36
>3hq2_A Bacillus subtilis M32 carboxypeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc; 2.90A {Bacillus subtilis} SCOP: d.92.1.0
Probab=20.89 E-value=68 Score=30.13 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=42.0
Q ss_pred CCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHH------HHHHhhhhhhccchhHHHHHHHHHhhcCCCh
Q 027619 102 ELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGI------IMNIKMEFDDEIGLSVYQRYATYLDAFGPDE 175 (221)
Q Consensus 102 elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgGi------L~~LrmeiDDl~Gls~y~rY~~YLdsFgpdE 175 (221)
.||..++.+--++-|+ -.++|+-|++-.-|.+. ++.|+.|+-+..|-. -..|-+-||.|.|+-
T Consensus 97 ~iP~~lv~~~~~~~s~----------~~~~W~~Ar~~nDf~~F~P~L~~vv~l~re~A~~~~~~-~~pYDaLLd~yEpg~ 165 (501)
T 3hq2_A 97 KIPEAEYKEYVILCSK----------AETAWEEAKGKSDFSLFSPYLEQLIEFNKRFITYWGYQ-EHPYDALLDLFEPGV 165 (501)
T ss_dssp TSCHHHHHHHHHHHHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCCS-SCTTHHHHHHHSTTC
T ss_pred CCCHHHHHHHHHHHHH----------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHhcCCCC
Confidence 4555555554444444 35789999987777774 455666666666632 267899999999963
No 37
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=20.51 E-value=2.8e+02 Score=24.40 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCC
Q 027619 83 IRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNND 120 (221)
Q Consensus 83 i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~td 120 (221)
|.++.++..|.-.+.+-=..=++.++..++.-+....+
T Consensus 80 i~~~~lR~~FDYfLs~~gE~~~~~i~~~v~~~i~~~lp 117 (332)
T 2es4_D 80 ARTRAVREFFDYCLTAQGELTPAALDALVRREIAAQLD 117 (332)
T ss_dssp CCSTHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhCC
Confidence 45678888888887766333355667777777766554
No 38
>1uze_A Angiotensin converting enzyme; metalloprotease, inhibitor, enalaprilat, zinc dependant peptidase, anti-hypertensive drug; HET: EAL; 1.82A {Homo sapiens} SCOP: d.92.1.5 PDB: 1o8a_A* 1o86_A* 1uzf_A* 2oc2_A* 2ydm_A* 2iux_A* 2iul_A* 2xy9_A* 3bkk_A* 3bkl_A* 3l3n_A*
Probab=20.50 E-value=3.5e+02 Score=24.71 Aligned_cols=54 Identities=9% Similarity=0.000 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHH-H-H---HHHHHHHHhhhhhhccchhHHHHHHHH-HhhcCCChhHHHHHHHH
Q 027619 126 EVLKNVFSAAEAV-E-E---FIGIIMNIKMEFDDEIGLSVYQRYATY-LDAFGPDESYLRKKVET 184 (221)
Q Consensus 126 eaLknvfrAAeAv-E-e---FgGiL~~LrmeiDDl~Gls~y~rY~~Y-LdsFgpdE~yLrKKVE~ 184 (221)
+..+.+|+++... . . .--.++.|+.++-.+.|-.. |..| ++.|+|+.. .+.||.
T Consensus 140 ~~r~~aw~~~~~~~~~~~~~~~~~lv~l~~e~A~~~G~~~---~~d~~r~~ye~~~~--~~~ld~ 199 (589)
T 1uze_A 140 EDLLWAWEGWRDKAGRAILQFYPKYVELINQAARLNGYVD---AGDSWRSMYETPSL--EQDLER 199 (589)
T ss_dssp HHHHHHHHHHHHHTHHHHTTTHHHHHHHHHHHHHHTTCSS---HHHHHHGGGCCTTH--HHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCC---HHHHHHhcCCHHHH--HHHHHH
Confidence 5566677775532 1 1 22357777777777777553 3333 468888765 444443
No 39
>2plg_A TLL0839 protein; hypothetical, uncharacterized, DUF1821, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 2.60A {Synechococcus elongatus} SCOP: d.198.1.2
Probab=20.31 E-value=13 Score=30.26 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHcccCCCch--------hHHHHHHhhhcccCCchhHHHHHHHHHHHHH-----HHHHHHHH
Q 027619 87 EIQRAFKDLMAADWGELPA--------SVIHDAKSALSRNNDDKAGQEVLKNVFSAAE-----AVEEFIGI 144 (221)
Q Consensus 87 ei~~afKdLmAasW~elp~--------svv~~ak~alSk~tdDkAGqeaLknvfrAAe-----AvEeFgGi 144 (221)
+.+.-+++||-+||+..=+ .|+-.....++. =|..-.+.|+++|+..|. -++||||.
T Consensus 87 ~~~~l~~~LLE~N~~~t~~arFaI~~n~V~~v~~r~ls~-Ld~~E~~~aIt~V~~lAD~~Dd~L~~~fg~~ 156 (163)
T 2plg_A 87 DELALYRKLLTLNWLTTFEAHFAIAEEQVQVVASRTLGG-ITAGEISRLITIVATLADDYDDALRAEFKGE 156 (163)
T ss_dssp THHHHHHHHHHHTTTTTTTCEEEEETTEEEEEEEEECTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHhccccccceEEEEECCEEEEEEEEEccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6888899999999995433 111111122222 344556888999988885 47888874
No 40
>2bsq_E FITA, trafficking protein A; transcription, transcription regulation complex, PIN domain, ribbon-helix-helix, DNA binding; HET: 5IU; 3.0A {Neisseria gonorrhoeae} SCOP: a.43.1.8 PDB: 2h1o_E*
Probab=20.25 E-value=1.3e+02 Score=21.51 Aligned_cols=41 Identities=12% Similarity=-0.021 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHH
Q 027619 85 DPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQ 125 (221)
Q Consensus 85 Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGq 125 (221)
|+++..++|..-+.+=--+.+.+.....+++...+..+-|+
T Consensus 9 pd~~~~~Lk~rAa~~GrSle~e~r~iL~~a~~~~~~~~l~~ 49 (77)
T 2bsq_E 9 SEATHNAIKFRARAAGRSTEAEIRLILDNIAKAQQTVRLGS 49 (77)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCcccccHHH
Confidence 57888889988888877788888888888876644434443
Done!