Query 027619
Match_columns 221
No_of_seqs 17 out of 19
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 21:32:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027619.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027619hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rbli_ d.73.1.1 (I:) Ribulose 61.8 2.7 0.00019 30.8 3.0 50 70-120 8-83 (109)
2 d1rrqa1 a.96.1.2 (A:9-229) Cat 59.7 3.2 0.00023 31.7 3.3 73 84-159 42-116 (221)
3 d1keaa_ a.96.1.2 (A:) Thymine- 57.6 3.2 0.00023 31.8 3.0 74 83-159 46-122 (217)
4 d1w07a2 a.29.3.2 (A:462-659) A 50.5 29 0.0021 25.7 7.5 10 148-157 124-133 (198)
5 d2abka_ a.96.1.1 (A:) Endonucl 47.8 3.8 0.00028 31.2 1.9 94 55-159 22-118 (211)
6 d1orna_ a.96.1.1 (A:) Endonucl 42.8 5.9 0.00043 30.0 2.3 75 82-159 42-119 (214)
7 d2fnaa1 a.4.5.11 (A:284-356) H 42.6 5.9 0.00043 27.2 2.1 30 82-111 35-71 (73)
8 d1svdm1 d.73.1.1 (M:3-110) Rib 40.4 8.8 0.00064 27.9 2.8 49 71-120 9-83 (108)
9 d1gvda_ a.4.1.3 (A:) c-Myb, DN 37.7 9 0.00066 23.6 2.2 35 135-169 15-50 (52)
10 d1r2fa_ a.25.1.2 (A:) Ribonucl 37.4 75 0.0055 24.3 8.2 53 82-137 8-60 (283)
11 d1wdds_ d.73.1.1 (S:) Ribulose 35.5 11 0.00082 27.9 2.8 27 75-101 13-39 (122)
12 d1wa5b_ a.118.1.1 (B:) Karyoph 34.4 29 0.0021 26.5 5.2 51 123-175 436-502 (503)
13 d2ddha2 a.29.3.2 (A:475-655) P 33.7 80 0.0058 22.9 7.9 64 114-179 68-144 (181)
14 d1m7ka_ a.7.7.1 (A:) Silencer 29.5 42 0.0031 22.6 4.8 30 126-155 10-51 (81)
15 d2cdqa1 c.73.1.3 (A:25-328) As 29.2 47 0.0035 25.9 5.8 90 104-204 46-144 (304)
16 d1o6ba_ c.26.1.3 (A:) Phosphop 28.4 28 0.002 22.8 3.7 40 79-120 122-162 (163)
17 d1uk5a_ a.7.7.1 (A:) BAG-famil 27.0 33 0.0024 24.5 4.0 12 144-155 64-75 (111)
18 d1bxni_ d.73.1.1 (I:) Ribulose 26.9 20 0.0014 26.6 2.9 45 76-120 7-77 (129)
19 d1k9xa_ d.92.1.5 (A:) Thermost 26.6 44 0.0032 28.6 5.5 45 129-174 114-164 (497)
20 d2j9ua1 a.24.28.1 (A:148-241) 26.5 18 0.0013 25.8 2.4 54 133-186 5-59 (94)
21 d1ky8a_ c.82.1.1 (A:) Non-phos 25.1 20 0.0015 29.5 2.8 51 76-126 42-99 (499)
22 d1guua_ a.4.1.3 (A:) c-Myb, DN 24.7 27 0.002 20.9 2.7 35 135-169 13-48 (50)
23 d1zoda1 c.67.1.4 (A:3-433) Dia 24.4 96 0.007 24.4 6.9 60 76-139 54-124 (431)
24 d1kg2a_ a.96.1.2 (A:) Catalyti 24.1 18 0.0013 27.3 2.2 73 83-159 43-118 (224)
25 d1bwvs_ d.73.1.1 (S:) Ribulose 22.8 29 0.0021 26.1 3.1 26 76-101 7-32 (138)
26 d1syya_ a.25.1.2 (A:) Ribonucl 22.7 1.6E+02 0.011 22.6 11.7 109 67-176 14-138 (317)
27 d1gk8i_ d.73.1.1 (I:) Ribulose 21.4 28 0.0021 26.0 2.8 27 75-101 13-39 (126)
28 d1ig6a_ a.4.3.1 (A:) MRF-2 DNA 21.3 27 0.002 23.8 2.5 75 88-180 7-94 (107)
29 d1jk0a_ a.25.1.2 (A:) Ribonucl 20.2 78 0.0057 25.1 5.5 56 80-137 63-118 (334)
No 1
>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Synechococcus sp., strain pcc 6301 [TaxId: 1131]}
Probab=61.76 E-value=2.7 Score=30.80 Aligned_cols=50 Identities=22% Similarity=0.478 Sum_probs=38.5
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHccc-----------------C--CCc-------hhHHHHHHhhhcccCC
Q 027619 70 NRSFSEDVAHMPVIRDPEIQRAFKDLMAADW-----------------G--ELP-------ASVIHDAKSALSRNND 120 (221)
Q Consensus 70 ~R~fS~d~~hlP~i~Dpei~~afKdLmAasW-----------------~--elp-------~svv~~ak~alSk~td 120 (221)
.|.| |+.+-||+++|.+|.+-...|++-.| . .|| +.|+.+.+.|++...+
T Consensus 8 ~~~~-eTfSyLP~Ltd~~I~~QV~yll~qGw~i~iE~ad~~~~~~~yW~mwklPmf~~~d~~~Vl~ele~c~~~~p~ 83 (109)
T d1rbli_ 8 ERRF-ETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFNEHSNPEEFYWTMWKLPLFACAAPQQVLDEVRECRSEYGD 83 (109)
T ss_dssp CCCC-STTTTSSCCCHHHHHHHHHHHHHHTCEEEEEEESCCCTTCCCCEECSSCCTTCCCHHHHHHHHHHHHHHCTT
T ss_pred Cccc-cccccCCCCCHHHHHHHHHHHHhCCCceeEEEccCCCccceeeeecccCcccCCCHHHHHHHHHHHHHhCCc
Confidence 4666 69999999999999999999998654 4 555 3567777777766543
No 2
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]}
Probab=59.66 E-value=3.2 Score=31.66 Aligned_cols=73 Identities=14% Similarity=0.082 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchh
Q 027619 84 RDPEIQRAFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLS 159 (221)
Q Consensus 84 ~Dpei~~afKdLmAa--sW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgGiL~~LrmeiDDl~Gls 159 (221)
+|.-+.++++.|++. +|..|-..-.++.++.+...+=-. .+..-.=.+.+.+++|+|.+-..+.+|-.|=|+.
T Consensus 42 ~~~~v~~~~~~L~~~~~t~~~la~a~~~~l~~~i~~~G~~~---ra~~l~~~~~~~~~~~~G~vp~~~~~Ll~LpGIG 116 (221)
T d1rrqa1 42 RVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYYS---RVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVG 116 (221)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHHSCHHHHHHHHTTSSCTH---HHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCC
T ss_pred cHHHHHHHHHHHHHhcchHHHHHhhcHHHHHhhhccchhhh---hhHHHHHHHHHHhhhcCCCCchHHHHHHHHHHhh
Confidence 588899999999884 444443344456666666544322 2333333467889999998887777777777777
No 3
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]}
Probab=57.63 E-value=3.2 Score=31.80 Aligned_cols=74 Identities=5% Similarity=0.136 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhccchh
Q 027619 83 IRDPEIQRAFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEA-VEEFIGIIMNIKMEFDDEIGLS 159 (221)
Q Consensus 83 i~Dpei~~afKdLmAa--sW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeA-vEeFgGiL~~LrmeiDDl~Gls 159 (221)
-+|..+..+++.|+.. +|..|-..-..++++++...+=- ..--++..++|+. +|+|||.+-.-+.||-.|=|+.
T Consensus 46 T~~~~v~~~~~~l~~~~pt~~~la~a~~~~l~~~i~~~G~~---~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~LpGVG 122 (217)
T d1keaa_ 46 TTAGHVKKIYDKFFVKYKCFEDILKTPKSEIAKDIKEIGLS---NQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVG 122 (217)
T ss_dssp SCHHHHHHHHHHHHHHCCSHHHHHHSCHHHHHHHTGGGSCH---HHHHHHHHHHHHHHHHHHTTSCCSCHHHHHTSTTCC
T ss_pred CcHHHHHHHHHHHHHhcccHHHHHHhhHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHhhh
Confidence 4788999999999875 33333334445666666653311 2244667777775 5679998888888888888877
No 4
>d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=50.47 E-value=29 Score=25.67 Aligned_cols=10 Identities=0% Similarity=-0.120 Sum_probs=5.3
Q ss_pred Hhhhhhhccc
Q 027619 148 IKMEFDDEIG 157 (221)
Q Consensus 148 LrmeiDDl~G 157 (221)
|+..|++||.
T Consensus 124 l~~~i~~L~~ 133 (198)
T d1w07a2 124 ANDQLRSLYT 133 (198)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 5
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=47.84 E-value=3.8 Score=31.23 Aligned_cols=94 Identities=12% Similarity=0.128 Sum_probs=60.9
Q ss_pred CCCCcCCcccccccccccccccCCCCCCCCCHHHHHHHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHH
Q 027619 55 IPFDCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVF 132 (221)
Q Consensus 55 ~~~d~~~~~s~~~~~~R~fS~d~~hlP~i~Dpei~~afKdLmAa--sW~elp~svv~~ak~alSk~tdDkAGqeaLknvf 132 (221)
.+.+.++||-.=++ =..| .--+|.-+.++++.|+.. +|..|-..-+.+++++++..+=- ...-+|..
T Consensus 22 ~~l~~~~p~~vli~--~iLs------qqT~~~~v~~~~~~l~~~~~t~~~la~a~~~~l~~~i~~~G~y---~~Ka~~l~ 90 (211)
T d2abka_ 22 TELNFSSPFELLIA--VLLS------AQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLY---NSKAENII 90 (211)
T ss_dssp CSSCCSSHHHHHHH--HHHT------TTSCHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHTTSTTH---HHHHHHHH
T ss_pred CCCCCCCHHHHHHH--HHHh------ccchHHHHHHHHHHHHHhccChHHHHhhhHhHhHHHHHHhhhh---hhHHHHHH
Confidence 34556778763221 1122 345688999999999874 44444444456667777653321 23446777
Q ss_pred HHHH-HHHHHHHHHHHHhhhhhhccchh
Q 027619 133 SAAE-AVEEFIGIIMNIKMEFDDEIGLS 159 (221)
Q Consensus 133 rAAe-AvEeFgGiL~~LrmeiDDl~Gls 159 (221)
++|+ -+++|||.+-..+.+|-.|=|+.
T Consensus 91 ~~a~~i~~~~~g~~p~~~~~L~~LpGVG 118 (211)
T d2abka_ 91 KTCRILLEQHNGEVPEDRAALEALPGVG 118 (211)
T ss_dssp HHHHHHHHHTTTSCCSCHHHHHHSTTCC
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhhc
Confidence 7777 57899998888888888888877
No 6
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=42.76 E-value=5.9 Score=30.02 Aligned_cols=75 Identities=11% Similarity=0.112 Sum_probs=50.7
Q ss_pred CCCCHHHHHHHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhccch
Q 027619 82 VIRDPEIQRAFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEA-VEEFIGIIMNIKMEFDDEIGL 158 (221)
Q Consensus 82 ~i~Dpei~~afKdLmAa--sW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeA-vEeFgGiL~~LrmeiDDl~Gl 158 (221)
.-+|.-+.++++.|+.. +|.++-..-+.++++.+...+= .....+|..++|+. +|+|||.+-.-+.+|-.|=|+
T Consensus 42 qT~~~~v~~~~~~l~~~~pt~~~la~~~~~e~~~~i~~~g~---y~~ka~~l~~~a~~i~~~~~g~vp~~~~~L~~LpGV 118 (214)
T d1orna_ 42 QCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGL---YRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGV 118 (214)
T ss_dssp TSCHHHHHHHHHHHHHHCCSHHHHHSSCHHHHHHHTGGGSS---HHHHHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTC
T ss_pred cChHHHHHHHHhhhhcccCchhhhhhccHHHhhhhhhhhhh---hhHHHHHHHHHhhhHHHHhCCCCCCCHHHHHhCcCc
Confidence 35788899999999886 4444434445566666655321 13355788888864 789999777667777777777
Q ss_pred h
Q 027619 159 S 159 (221)
Q Consensus 159 s 159 (221)
.
T Consensus 119 G 119 (214)
T d1orna_ 119 G 119 (214)
T ss_dssp C
T ss_pred c
Confidence 6
No 7
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=42.59 E-value=5.9 Score=27.21 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHHHcccC-------CCchhHHHHH
Q 027619 82 VIRDPEIQRAFKDLMAADWG-------ELPASVIHDA 111 (221)
Q Consensus 82 ~i~Dpei~~afKdLmAasW~-------elp~svv~~a 111 (221)
.|.|+.+-+.++.|+--+|= .|||.|+..|
T Consensus 35 ~I~d~~ls~lL~nL~k~~~iek~~~~Y~i~DPv~~~a 71 (73)
T d2fnaa1 35 EISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA 71 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred CCChHHHHHHHHHHHHcCceeecCCeeccCcHHHHHh
Confidence 58899999999999999994 5788887654
No 8
>d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Halothiobacillus neapolitanus [TaxId: 927]}
Probab=40.39 E-value=8.8 Score=27.87 Aligned_cols=49 Identities=20% Similarity=0.419 Sum_probs=36.8
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHcccC-------------------CCc-------hhHHHHHHhhhcccCC
Q 027619 71 RSFSEDVAHMPVIRDPEIQRAFKDLMAADWG-------------------ELP-------ASVIHDAKSALSRNND 120 (221)
Q Consensus 71 R~fS~d~~hlP~i~Dpei~~afKdLmAasW~-------------------elp-------~svv~~ak~alSk~td 120 (221)
+.| |+.+-||+++|.+|.+-...|++-.|. .|| +.|+.+++.|++...+
T Consensus 9 ~~~-eTfSyLP~Ltde~I~~QV~yll~qGw~~~~E~~d~~~~r~~yW~mwklPmf~~~d~~~Vl~Ele~c~~~~p~ 83 (108)
T d1svdm1 9 LKY-ETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEVKNSMNQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPT 83 (108)
T ss_dssp CCC-STTTTSCCCCHHHHHHHHHHHHHTTCEEEEEEECGGGTTCSCCEEESCCCTTCCCHHHHHHHHHHHHHHSTT
T ss_pred ccc-cccccCCCCCHHHHHHHHHHHHHCCCEeeEeecccCCCcCceeeecCCCCcCCCcHHHHHHHHHHHHHHCCC
Confidence 444 588999999999999999999987663 444 4567777777665443
No 9
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=37.70 E-value=9 Score=23.59 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=23.4
Q ss_pred HHHHHHHH-HHHHHHhhhhhhccchhHHHHHHHHHh
Q 027619 135 AEAVEEFI-GIIMNIKMEFDDEIGLSVYQRYATYLD 169 (221)
Q Consensus 135 AeAvEeFg-GiL~~LrmeiDDl~Gls~y~rY~~YLd 169 (221)
.++|++|| +-=..+=..+..=.+-...+||..||+
T Consensus 15 ~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~ 50 (52)
T d1gvda_ 15 IKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp HHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence 46788898 534444444454455558999999986
No 10
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]}
Probab=37.42 E-value=75 Score=24.31 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHH
Q 027619 82 VIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEA 137 (221)
Q Consensus 82 ~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeA 137 (221)
.+.|+......|...+.-|..=.=++-+|.+.= .+-|++ -|+++++++..--.
T Consensus 8 ~~~d~~~~~~y~k~~~~fW~peEi~l~~D~~dw-~~Lt~~--Er~~~~~~l~~~~~ 60 (283)
T d1r2fa_ 8 KIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAW-QTLSAA--EQQLTIRVFTGLTL 60 (283)
T ss_dssp SCSCHHHHHHHHHHHHTCCCGGGSCGGGGHHHH-HTSCHH--HHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCCCcccChHhhHHHH-hhCCHH--HHHHHHHHHHHHHH
Confidence 578999999999999999976554555565543 344444 48889888554333
No 11
>d1wdds_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=35.55 E-value=11 Score=27.89 Aligned_cols=27 Identities=15% Similarity=0.453 Sum_probs=24.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHcccC
Q 027619 75 EDVAHMPVIRDPEIQRAFKDLMAADWG 101 (221)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAasW~ 101 (221)
|+.|-||+++|-+|.+-..-|++--|.
T Consensus 13 ETfSyLP~ltd~qI~~QI~yll~qGw~ 39 (122)
T d1wdds_ 13 ETLSYLPPLTVEDLLKQIEYLLRSKWV 39 (122)
T ss_dssp STTTTSSCCCHHHHHHHHHHHHHTTCE
T ss_pred eeeccCCCCCHHHHHHHHHHHHHCCCe
Confidence 588999999999999999999998883
No 12
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=34.38 E-value=29 Score=26.49 Aligned_cols=51 Identities=20% Similarity=0.378 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHH---------------HHHHHHHHHHHHhhhhhhccchhHHHHHHHHHhh-cCCCh
Q 027619 123 AGQEVLKNVFSAAE---------------AVEEFIGIIMNIKMEFDDEIGLSVYQRYATYLDA-FGPDE 175 (221)
Q Consensus 123 AGqeaLknvfrAAe---------------AvEeFgGiL~~LrmeiDDl~Gls~y~rY~~YLds-FgpdE 175 (221)
+.-++|.|+++.++ .+||.|| +..|. +|-+.---..|++-..-|+. |+.||
T Consensus 436 ~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~-~~~i~-~Lq~~~~~~i~~~A~~il~~~f~~~~ 502 (503)
T d1wa5b_ 436 VTLDALENILKMGEADKEARGLNINENADFIEKAGG-MEKIF-NCQQNENDKIYEKAYKIIETYFGEEE 502 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTH-HHHHH-GGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCC-HHHHH-HHHcCCCHHHHHHHHHHHHHHcCCcC
Confidence 34567888887654 4667766 22221 12111111267777777775 67665
No 13
>d2ddha2 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=33.70 E-value=80 Score=22.86 Aligned_cols=64 Identities=22% Similarity=0.262 Sum_probs=32.5
Q ss_pred hhcccCCchhHHHHHHHHHH--HHHHHHHHHH-----------HHHHHhhhhhhccchhHHHHHHHHHhhcCCChhHHH
Q 027619 114 ALSRNNDDKAGQEVLKNVFS--AAEAVEEFIG-----------IIMNIKMEFDDEIGLSVYQRYATYLDAFGPDESYLR 179 (221)
Q Consensus 114 alSk~tdDkAGqeaLknvfr--AAeAvEeFgG-----------iL~~LrmeiDDl~Gls~y~rY~~YLdsFgpdE~yLr 179 (221)
++.+.. |..=+++|+++++ |..-+|+.-| .+..|+.+|++||.- .=.-=+...|+||+.++.|+
T Consensus 68 ~i~~~~-~~~~k~vL~~L~~LyaL~~i~~~~g~fl~~g~ls~~q~~~i~~~i~~L~~~-lrp~Av~LVDaF~~~D~~L~ 144 (181)
T d2ddha2 68 KLPKIQ-DKAVQAVLRNLCLLYSLYGISQKGGDFLEGSIITGAQLSQVNARILELLTL-IRPNAVALVDAFDFKDMTLG 144 (181)
T ss_dssp HGGGCS-SHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSSCHHHHHHHHHHHHHHHHH-HGGGHHHHHHTTCCCHHHHT
T ss_pred HHHhCC-ChHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHhHhcCCCHHHHc
Confidence 344433 3444566665544 2334444433 234566677776652 11112345677777777664
No 14
>d1m7ka_ a.7.7.1 (A:) Silencer of death domains, Sodd (Bag4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.46 E-value=42 Score=22.60 Aligned_cols=30 Identities=33% Similarity=0.544 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHhhhhhhc
Q 027619 126 EVLKNVFSAAEAVEEFIG------------IIMNIKMEFDDE 155 (221)
Q Consensus 126 eaLknvfrAAeAvEeFgG------------iL~~LrmeiDDl 155 (221)
+++..|=.....|+.|.| +|+.+-+.||.+
T Consensus 10 ~i~~~v~~l~~~V~~f~g~~~dke~~~L~E~L~~~llkLD~I 51 (81)
T d1m7ka_ 10 HVLEKVQYLEQEVEEFVGKKTDKAYWLLEEMLTKELLELDSV 51 (81)
T ss_dssp HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHhCCc
Confidence 344444455555555555 566666777765
No 15
>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=29.17 E-value=47 Score=25.93 Aligned_cols=90 Identities=18% Similarity=0.290 Sum_probs=44.0
Q ss_pred chhHHHHHHhhhcccCCchhHHHHHHHHHHH-HHHHHHHH---HHHHHHhhhhhhcc-chh----HHHHHHHHHhhcCCC
Q 027619 104 PASVIHDAKSALSRNNDDKAGQEVLKNVFSA-AEAVEEFI---GIIMNIKMEFDDEI-GLS----VYQRYATYLDAFGPD 174 (221)
Q Consensus 104 p~svv~~ak~alSk~tdDkAGqeaLknvfrA-AeAvEeFg---GiL~~LrmeiDDl~-Gls----~y~rY~~YLdsFgpd 174 (221)
-+.++..++.+.+...++..-.+.|..+... -+.+++.. -.+.++..+|++++ |+. ...|...|+-+||+-
T Consensus 46 Td~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~~l~~~~~~~~~~~~~l~~~l~~i~~~~~~s~~~~D~ils~GE~ 125 (304)
T d2cdqa1 46 TNNLLLAGEKAVSCGVSNASEIEELSIIKELHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGEC 125 (304)
T ss_dssp HHHHHHHHHHHTTTCTTTGGGCHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhccccccchhhHHHHHHhHHH
Confidence 3456677778877766666555555443331 11112211 11222222222221 111 224666788888863
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhhcCCCCCc
Q 027619 175 ESYLRKKVETELGSKMIFLKMRCAGLGSEW 204 (221)
Q Consensus 175 E~yLrKKVE~ELGtkmI~LKmRcsGlgseW 204 (221)
|-++++..-.|-.|+.+.|
T Consensus 126 -----------lSa~ll~~~L~~~gi~a~~ 144 (304)
T d2cdqa1 126 -----------LSTRIFAAYLNTIGVKARQ 144 (304)
T ss_dssp -----------HHHHHHHHHHHHTTCCEEE
T ss_pred -----------HHHHHHHHHHHHcCCceEE
Confidence 4455555555555665544
No 16
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=28.39 E-value=28 Score=22.84 Aligned_cols=40 Identities=8% Similarity=0.192 Sum_probs=31.0
Q ss_pred CCCCCCCHHHHHHHHHHHHcccCC-CchhHHHHHHhhhcccCC
Q 027619 79 HMPVIRDPEIQRAFKDLMAADWGE-LPASVIHDAKSALSRNND 120 (221)
Q Consensus 79 hlP~i~Dpei~~afKdLmAasW~e-lp~svv~~ak~alSk~td 120 (221)
...+||--+|++.++ ...+|.. +|++|.+-.|+...++++
T Consensus 122 ~~~~ISST~IR~~i~--~g~~i~~lVP~~V~~yI~e~~~~~~~ 162 (163)
T d1o6ba_ 122 QYSFLSSSIVKEVAR--YDGSVSEFVPPEVELALQQKFRQGGS 162 (163)
T ss_dssp TTTTCCHHHHHHHHH--TTCCCTTTSCHHHHHHHHHHHHSCSC
T ss_pred hhhccCHHHHHHHHH--cCCChHHhCCHHHHHHHHHHHhccCC
Confidence 345688899998765 3667888 599999999988877653
No 17
>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.99 E-value=33 Score=24.55 Aligned_cols=12 Identities=8% Similarity=0.157 Sum_probs=9.2
Q ss_pred HHHHHhhhhhhc
Q 027619 144 IIMNIKMEFDDE 155 (221)
Q Consensus 144 iL~~LrmeiDDl 155 (221)
+|+.+...||.+
T Consensus 64 ~L~~~LlkLD~I 75 (111)
T d1uk5a_ 64 YLTKELLALDSV 75 (111)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHhcCc
Confidence 677788888876
No 18
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Alcaligenes eutrophus [TaxId: 106590]}
Probab=26.91 E-value=20 Score=26.60 Aligned_cols=45 Identities=16% Similarity=0.393 Sum_probs=35.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHccc-----------------C--CC-------chhHHHHHHhhhcccCC
Q 027619 76 DVAHMPVIRDPEIQRAFKDLMAADW-----------------G--EL-------PASVIHDAKSALSRNND 120 (221)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAasW-----------------~--el-------p~svv~~ak~alSk~td 120 (221)
..+-||+++|-+|.+-+..|++-.| . .| +..|+.+++.|++...+
T Consensus 7 tfSyLP~Ltd~~I~~QV~yll~qG~~i~iE~ad~r~~r~~yW~mw~lPmf~~~d~~~Vl~ele~c~~e~p~ 77 (129)
T d1bxni_ 7 TFSFLPELTDEQITKQLEYCLNQGWAVGLEYTDDPHPRNTYWEMFGLPMFDLRDAAGILMEINNARNTFPN 77 (129)
T ss_dssp BTTTSSCCCHHHHHHHHHHHHHHTCEEEEEEESCCCTTCCCCEESSSCBTTCCCHHHHHHHHHHHHHHCSS
T ss_pred eeccCCCCCHHHHHHHHHHHHHCCCEeeEEEecCcCcccchhhccccccccCCCHHHHHHHHHHHHHHCCc
Confidence 4568999999999999999998765 3 45 36777777777776544
No 19
>d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=26.63 E-value=44 Score=28.57 Aligned_cols=45 Identities=18% Similarity=0.377 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHH------HHHHHhhhhhhccchhHHHHHHHHHhhcCCC
Q 027619 129 KNVFSAAEAVEEFIG------IIMNIKMEFDDEIGLSVYQRYATYLDAFGPD 174 (221)
Q Consensus 129 knvfrAAeAvEeFgG------iL~~LrmeiDDl~Gls~y~rY~~YLdsFgpd 174 (221)
.++|+.|++---|.- .|+.|+.|+-+..|-.. ..|-+-||.|.|+
T Consensus 114 ~~~W~~AR~~nDf~~f~P~Leklv~L~re~A~~l~~~~-~pYDaLLd~yEpg 164 (497)
T d1k9xa_ 114 TKAWEEAKAKDDFSKFEPWLDKIISLAKRAAEYLGYEE-EPYDALLDLYEEG 164 (497)
T ss_dssp HHHHHHHHHTTCGGGTHHHHHHHHHHHHHHHHHHCCSS-CHHHHHHHHHSTT
T ss_pred HHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHhcCCC-CchhhHHHhhCCC
Confidence 578999887655544 57888888888888543 6799999999985
No 20
>d2j9ua1 a.24.28.1 (A:148-241) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.51 E-value=18 Score=25.78 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccchh-HHHHHHHHHhhcCCChhHHHHHHHHhh
Q 027619 133 SAAEAVEEFIGIIMNIKMEFDDEIGLS-VYQRYATYLDAFGPDESYLRKKVETEL 186 (221)
Q Consensus 133 rAAeAvEeFgGiL~~LrmeiDDl~Gls-~y~rY~~YLdsFgpdE~yLrKKVE~EL 186 (221)
-.||+++-|..++++||+.+-.-=-|- --.--+.-|+.++|...==|.||..-|
T Consensus 5 ~Vae~~~~FIT~mDaLkL~~~a~DqLhPlL~dL~~slnrl~~~dfegk~kv~~Wl 59 (94)
T d2j9ua1 5 YVAEATGNFITVMDALKLNYNAKDQLHPLLAELLISINRVTRDDFENRSKLIDWI 59 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHHCCCCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCcchhhhchhHHHHHHHHHhcCccccchHHHHHHHH
Confidence 369999999999999999753211111 011112334445666555567776644
No 21
>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon Thermoproteus tenax [TaxId: 2271]}
Probab=25.06 E-value=20 Score=29.47 Aligned_cols=51 Identities=22% Similarity=0.278 Sum_probs=33.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHc---ccCCCch----hHHHHHHhhhcccCCchhHHH
Q 027619 76 DVAHMPVIRDPEIQRAFKDLMAA---DWGELPA----SVIHDAKSALSRNNDDKAGQE 126 (221)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAa---sW~elp~----svv~~ak~alSk~tdDkAGqe 126 (221)
.+.++|.....||..|++..-++ +|..+|. .+...+...|.++.|+.+--.
T Consensus 42 ~i~~v~~a~~~dv~~Av~~A~~a~~~~w~~~~~~~R~~iL~~~a~~l~~~~~~la~~~ 99 (499)
T d1ky8a_ 42 TIAKVISPSREEVERTLDVLFKRGRWSARDMPGTERLAVLRKAADIIERNLDVFAEVL 99 (499)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHhchhhhhcCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45677888888888877544322 6888876 456666666766665554433
No 22
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.66 E-value=27 Score=20.90 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=21.3
Q ss_pred HHHHHHHH-HHHHHHhhhhhhccchhHHHHHHHHHh
Q 027619 135 AEAVEEFI-GIIMNIKMEFDDEIGLSVYQRYATYLD 169 (221)
Q Consensus 135 AeAvEeFg-GiL~~LrmeiDDl~Gls~y~rY~~YLd 169 (221)
.++|+++| |--..+-..+..=.+...-.||..||+
T Consensus 13 ~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 48 (50)
T d1guua_ 13 KKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48 (50)
T ss_dssp HHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence 45677787 433333333433344448899999996
No 23
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}
Probab=24.37 E-value=96 Score=24.39 Aligned_cols=60 Identities=20% Similarity=0.157 Sum_probs=43.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHccc----CCCchhHHHHHHhhhccc--CCc-----hhHHHHHHHHHHHHHHHH
Q 027619 76 DVAHMPVIRDPEIQRAFKDLMAADW----GELPASVIHDAKSALSRN--NDD-----KAGQEVLKNVFSAAEAVE 139 (221)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAasW----~elp~svv~~ak~alSk~--tdD-----kAGqeaLknvfrAAeAvE 139 (221)
.++| .+|+|.+|+++-+..-+ .-+.+..++-|++-+... .-| ..|-||.+++.|.|++..
T Consensus 54 ~lGh----~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t 124 (431)
T d1zoda1 54 VLGH----CHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVT 124 (431)
T ss_dssp TTCB----TCHHHHHHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred hhcC----CCHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhc
Confidence 4566 68999999999887544 234566667777655432 223 469999999999999884
No 24
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]}
Probab=24.15 E-value=18 Score=27.34 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHc--ccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhccchh
Q 027619 83 IRDPEIQRAFKDLMAA--DWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAE-AVEEFIGIIMNIKMEFDDEIGLS 159 (221)
Q Consensus 83 i~Dpei~~afKdLmAa--sW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAe-AvEeFgGiL~~LrmeiDDl~Gls 159 (221)
-+|.-+..+++.|+.. +|.+|-.+-+.++++.+...+=- +-+ ++..++|+ .+++|+|.+-..+.+|-.|=|+.
T Consensus 43 T~~~~v~~~~~~l~~~~pt~~~la~a~~~~l~~~i~~~g~~---~ka-~~l~~~~~~i~~~~~g~vp~~~~~L~~LpGVG 118 (224)
T d1kg2a_ 43 TQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYY---ARA-RNLHKAAQQVATLHGGKFPETFEEVAALPGVG 118 (224)
T ss_dssp SCHHHHHHHHHHHHHHCSSHHHHHHSCHHHHHHHHTTSCCT---HHH-HHHHHHHHHHHHHSTTSCCCSHHHHHTSTTCC
T ss_pred CcHHHHHHHHHHHHHHhccHHHHHHhhHHHHHhHhhhhhHH---HHH-HHHHHhhhhhhhhccCCcchHHHHHHHHHhhh
Confidence 3678889999999865 33333333345666666664422 112 55555555 46789998888888887777776
No 25
>d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=22.82 E-value=29 Score=26.09 Aligned_cols=26 Identities=12% Similarity=0.387 Sum_probs=22.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHcccC
Q 027619 76 DVAHMPVIRDPEIQRAFKDLMAADWG 101 (221)
Q Consensus 76 d~~hlP~i~Dpei~~afKdLmAasW~ 101 (221)
..+-||+++|.+|.+-...|++-.|.
T Consensus 7 tfSyLP~LtdeqI~~QV~yll~qGw~ 32 (138)
T d1bwvs_ 7 TFSFLPDLTDEQIKKQIDYMISKKLA 32 (138)
T ss_dssp TTTTSCCCCHHHHHHHHHHHHHTTCE
T ss_pred eeccCCCCCHHHHHHHHHHHHcCCCE
Confidence 56789999999999999999997663
No 26
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]}
Probab=22.70 E-value=1.6e+02 Score=22.58 Aligned_cols=109 Identities=16% Similarity=0.159 Sum_probs=68.3
Q ss_pred cccccccc---ccCCCCCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHH
Q 027619 67 IGCNRSFS---EDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIG 143 (221)
Q Consensus 67 ~~~~R~fS---~d~~hlP~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgG 143 (221)
+..+|.|- .|+-.+=.|+.|++.+-+|..++.-|..=.=++-+|++.-=+ +.-+..-|++++.++...-..+..-|
T Consensus 14 ~~~~~~~~~~~~~~~~l~p~kYp~~~~~yk~~~~~fW~peEi~ls~D~~dw~~-~kL~~~e~~~~~~~l~~~~~~d~~v~ 92 (317)
T d1syya_ 14 LNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKS-DRLSEDERRVILLNLGFFSTAESLVG 92 (317)
T ss_dssp GGGCCSSSCCSSCTTCCCSCCCHHHHHHHHHHHHTCCCGGGSCCHHHHHHHHS-SCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeeCCCCCchhhcCCCCCHHHHHHHHHHHHcCCCccccCccccHHHHhh-CCCCHHHHHHHHHHHHHHHHHhhHHh
Confidence 44555543 455567789999999999999999998766667777765411 22345678888888876555555444
Q ss_pred H-H-HHHhhhhhh-----ccchh-----HHHH-HHHHHhhcCCChh
Q 027619 144 I-I-MNIKMEFDD-----EIGLS-----VYQR-YATYLDAFGPDES 176 (221)
Q Consensus 144 i-L-~~LrmeiDD-----l~Gls-----~y~r-Y~~YLdsFgpdE~ 176 (221)
. + ..+.-.+.+ ..+.- .|.+ |...++++++|+.
T Consensus 93 ~~~~~~l~~~i~~pE~~~~~~~q~~~E~iH~~sYs~il~~l~~d~~ 138 (317)
T d1syya_ 93 NNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEK 138 (317)
T ss_dssp HHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred hhhHhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 2 2 122222211 11111 4444 7888999999754
No 27
>d1gk8i_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=21.39 E-value=28 Score=26.00 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=25.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHcccC
Q 027619 75 EDVAHMPVIRDPEIQRAFKDLMAADWG 101 (221)
Q Consensus 75 ~d~~hlP~i~Dpei~~afKdLmAasW~ 101 (221)
|+.+-||+++|.+|.+-..=++.-.|.
T Consensus 13 ETfSyLPpLtdeqI~kQI~Y~i~~GW~ 39 (126)
T d1gk8i_ 13 ETFSYLPPLTDEQIAAQVDYIVANGWI 39 (126)
T ss_dssp STTTTSSCCCHHHHHHHHHHHHHTTCE
T ss_pred eecccCCCCCHHHHHHHHHHHHhcCCc
Confidence 589999999999999999999999995
No 28
>d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.29 E-value=27 Score=23.80 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHHHH--HHH--Hhhhhhhccchh----
Q 027619 88 IQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGI--IMN--IKMEFDDEIGLS---- 159 (221)
Q Consensus 88 i~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeAvEeFgGi--L~~--LrmeiDDl~Gls---- 159 (221)
....+.+.|+.....++..- -..|++ -|.|+-=.+|.++||- +.. .=.+|-..+|+.
T Consensus 7 Fl~~L~~F~~~rg~~~~~~P-------------~i~gk~--vDL~~Ly~~V~~~GG~~~V~~~~~W~~ia~~lg~~~~~~ 71 (107)
T d1ig6a_ 7 FLVALYKYMKERKTPIERIP-------------YLGFKQ--INLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGST 71 (107)
T ss_dssp HHHHHHHHHHTTTCCGGGCC-------------CSSSSS--CCHHHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCT
T ss_pred HHHHHHHHHHHcCCCCCcCC-------------eECCcc--ccHHHHHHHHHHhCChhhccccccHHHHHHHhCCCCCCC
Confidence 34556666776665543211 123333 2678888889999992 222 123455555552
Q ss_pred -----HHHHHHHHHhhcCCChhHHHH
Q 027619 160 -----VYQRYATYLDAFGPDESYLRK 180 (221)
Q Consensus 160 -----~y~rY~~YLdsFgpdE~yLrK 180 (221)
.=+-|.+||..| |.|++.
T Consensus 72 ~~~~~Lk~~Y~~~L~~y---E~~~~~ 94 (107)
T d1ig6a_ 72 SAATCTRRHYERLILPY---ERFIKG 94 (107)
T ss_dssp TTTTTHHHHHHHHTTTT---HHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HHHHhc
Confidence 445588889988 667664
No 29
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Probab=20.19 E-value=78 Score=25.14 Aligned_cols=56 Identities=21% Similarity=0.211 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHHHHcccCCCchhHHHHHHhhhcccCCchhHHHHHHHHHHHHHH
Q 027619 80 MPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEA 137 (221)
Q Consensus 80 lP~i~Dpei~~afKdLmAasW~elp~svv~~ak~alSk~tdDkAGqeaLknvfrAAeA 137 (221)
|=.|+-|++.+-.|+..+.-|..=.=++-+|++.--++-|| .-|+++++++..--+
T Consensus 63 ~~PikY~~~~~~Ykk~~~~fW~peEIdls~D~~dw~~~Lt~--~Er~~i~~il~ffa~ 118 (334)
T d1jk0a_ 63 LFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNE--NERFFISRVLAFFAA 118 (334)
T ss_dssp CCSCSCHHHHHHHHHHHTTCCCGGGCCCTTHHHHHHHTCCH--HHHHHHHHHHHHHHT
T ss_pred EeCCcCHHHHHHHHHHHHcCCCchhccCcCCHHHHhhcCCH--HHHHHHHHHHHHHHh
Confidence 44589999999999999999986555555665543222233 356788887664433
Done!