BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027620
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LHP|A Chain A, Crystal Structure Of Pyridoxal Kinase From Sheep Brain
pdb|1LHP|B Chain B, Crystal Structure Of Pyridoxal Kinase From Sheep Brain
pdb|1LHR|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Atp
pdb|1LHR|B Chain B, Crystal Structure Of Pyridoxal Kinase Complexed With Atp
pdb|1RFT|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Amp-
Pcp And Pyridoxamine
pdb|1RFU|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|B Chain B, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|C Chain C, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|D Chain D, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|E Chain E, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|F Chain F, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|G Chain G, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|H Chain H, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFV|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
pdb|1RFV|B Chain B, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
pdb|1YGJ|A Chain A, Crystal Structure Of Pyridoxal Kinase In Complex With
Roscovitine And Derivatives
pdb|1YGK|A Chain A, Crystal Structure Of Pyridoxal Kinase In Complex With
Roscovitine And Derivatives
pdb|1YHJ|A Chain A, Crystal Structure Of Pyridoxal Kinase In Complex With
Roscovitine And Derivatives
Length = 312
Score = 223 bits (568), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 107/188 (56%), Positives = 142/188 (75%), Gaps = 4/188 (2%)
Query: 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQL 72
E RVLSIQSH V+GYVGN++A FPLQ+LG++VD ++SVQFSNHTGY +KGQVLN +L
Sbjct: 3 EECRVLSIQSHVVRGYVGNRAATFPLQVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDEL 62
Query: 73 CDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD---- 128
+L +GL+ N++ Y ++LTGY SFL ++ +V++L+ NP L+YVCDPVMGD
Sbjct: 63 QELYDGLKLNHVNQYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNG 122
Query: 129 EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAK 188
EG +YVP +L+ VYREKVVPVA ++TPNQFEAE LTG +I S+ + E +LH+ GP
Sbjct: 123 EGAMYVPDDLLPVYREKVVPVADIITPNQFEAELLTGRKIHSQEEALEVMDMLHSMGPDT 182
Query: 189 VVITSINI 196
VVITS N+
Sbjct: 183 VVITSSNL 190
>pdb|3FHX|A Chain A, Crystal Structure Of D235a Mutant Of Human Pyridoxal
Kinase
pdb|3FHX|B Chain B, Crystal Structure Of D235a Mutant Of Human Pyridoxal
Kinase
Length = 312
Score = 217 bits (553), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 104/207 (50%), Positives = 147/207 (71%), Gaps = 9/207 (4%)
Query: 12 SETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQ 71
E RVLSIQSH ++GYVGN++A FPLQ+LG+++D ++SVQFSNHTGY +KGQVLN +
Sbjct: 2 EEECRVLSIQSHVIRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDE 61
Query: 72 LCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD--- 128
L +L EGL NN+ Y ++LTGY SFL ++ +V++L+ NP L+YVCDPV+GD
Sbjct: 62 LQELYEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWD 121
Query: 129 -EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPA 187
EG +YVP +L+ VY+EKVVP+A ++TPNQFEAE L+G +I S+ + +LH+ GP
Sbjct: 122 GEGSMYVPEDLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPD 181
Query: 188 KVVITSINI-----DGNLFLIGSHQKE 209
VVITS ++ L ++GS ++
Sbjct: 182 TVVITSSDLPSPQGSNYLIVLGSQRRR 208
>pdb|2YXT|A Chain A, Human Pyridoxal Kinase
pdb|2YXT|B Chain B, Human Pyridoxal Kinase
pdb|2YXU|A Chain A, Human Pyridoxal Kinase
pdb|2YXU|B Chain B, Human Pyridoxal Kinase
pdb|3KEU|A Chain A, Crystal Structure Of Human Pl Kinase With Bound Plp And
Atp
pdb|3KEU|B Chain B, Crystal Structure Of Human Pl Kinase With Bound Plp And
Atp
pdb|4EN4|A Chain A, Crystal Structure Of The Ternary Human Pl
Kinase-Ginkgotoxin-Mgatp Complex
pdb|4EN4|B Chain B, Crystal Structure Of The Ternary Human Pl
Kinase-Ginkgotoxin-Mgatp Complex
pdb|4EOH|A Chain A, Crystal Structure Of Human Pl Kinase With Bound
Theophylline
pdb|4EOH|B Chain B, Crystal Structure Of Human Pl Kinase With Bound
Theophylline
Length = 312
Score = 217 bits (553), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 104/207 (50%), Positives = 147/207 (71%), Gaps = 9/207 (4%)
Query: 12 SETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQ 71
E RVLSIQSH ++GYVGN++A FPLQ+LG+++D ++SVQFSNHTGY +KGQVLN +
Sbjct: 2 EEECRVLSIQSHVIRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDE 61
Query: 72 LCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD--- 128
L +L EGL NN+ Y ++LTGY SFL ++ +V++L+ NP L+YVCDPV+GD
Sbjct: 62 LQELYEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWD 121
Query: 129 -EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPA 187
EG +YVP +L+ VY+EKVVP+A ++TPNQFEAE L+G +I S+ + +LH+ GP
Sbjct: 122 GEGSMYVPEDLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPD 181
Query: 188 KVVITSINI-----DGNLFLIGSHQKE 209
VVITS ++ L ++GS ++
Sbjct: 182 TVVITSSDLPSPQGSNYLIVLGSQRRR 208
>pdb|3FHY|A Chain A, Crystal Structure Of D235n Mutant Of Human Pyridoxal
Kinase
pdb|3FHY|B Chain B, Crystal Structure Of D235n Mutant Of Human Pyridoxal
Kinase
Length = 312
Score = 217 bits (553), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 104/207 (50%), Positives = 147/207 (71%), Gaps = 9/207 (4%)
Query: 12 SETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQ 71
E RVLSIQSH ++GYVGN++A FPLQ+LG+++D ++SVQFSNHTGY +KGQVLN +
Sbjct: 2 EEECRVLSIQSHVIRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDE 61
Query: 72 LCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD--- 128
L +L EGL NN+ Y ++LTGY SFL ++ +V++L+ NP L+YVCDPV+GD
Sbjct: 62 LQELYEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWD 121
Query: 129 -EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPA 187
EG +YVP +L+ VY+EKVVP+A ++TPNQFEAE L+G +I S+ + +LH+ GP
Sbjct: 122 GEGSMYVPEDLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPD 181
Query: 188 KVVITSINI-----DGNLFLIGSHQKE 209
VVITS ++ L ++GS ++
Sbjct: 182 TVVITSSDLPSPQGSNYLIVLGSQRRR 208
>pdb|2F7K|A Chain A, Crystal Structure Of Human Pyridoxal Kinase
pdb|2F7K|B Chain B, Crystal Structure Of Human Pyridoxal Kinase
Length = 327
Score = 217 bits (552), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 104/207 (50%), Positives = 147/207 (71%), Gaps = 9/207 (4%)
Query: 12 SETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQ 71
E RVLSIQSH ++GYVGN++A FPLQ+LG+++D ++SVQFSNHTGY +KGQVLN +
Sbjct: 17 EEECRVLSIQSHVIRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDE 76
Query: 72 LCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD--- 128
L +L EGL NN+ Y ++LTGY SFL ++ +V++L+ NP L+YVCDPV+GD
Sbjct: 77 LQELYEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWD 136
Query: 129 -EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPA 187
EG +YVP +L+ VY+EKVVP+A ++TPNQFEAE L+G +I S+ + +LH+ GP
Sbjct: 137 GEGSMYVPEDLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPD 196
Query: 188 KVVITSINI-----DGNLFLIGSHQKE 209
VVITS ++ L ++GS ++
Sbjct: 197 TVVITSSDLPSPQGSNYLIVLGSQRRR 223
>pdb|2AJP|A Chain A, Crystal Structure Of A Human Pyridoxal Kinase
pdb|2AJP|B Chain B, Crystal Structure Of A Human Pyridoxal Kinase
Length = 326
Score = 216 bits (550), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 103/203 (50%), Positives = 146/203 (71%), Gaps = 9/203 (4%)
Query: 16 RVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDL 75
RVLSIQSH ++GYVGN++A FPLQ+LG+++D ++SVQFSNHTGY +KGQVLN +L +L
Sbjct: 20 RVLSIQSHVIRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDELQEL 79
Query: 76 IEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD----EGK 131
EGL NN+ Y ++LTGY SFL ++ +V++L+ NP L+YVCDPV+GD EG
Sbjct: 80 YEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDGEGS 139
Query: 132 LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVI 191
+YVP +L+ VY+EKVVP+A ++TPNQFEAE L+G +I S+ + +LH+ GP VVI
Sbjct: 140 MYVPEDLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDTVVI 199
Query: 192 TSINI-----DGNLFLIGSHQKE 209
TS ++ L ++GS ++
Sbjct: 200 TSSDLPSPQGSNYLIVLGSQRRR 222
>pdb|3ZS7|A Chain A, Crystal Structure Of Pyridoxal Kinase From Trypanosoma
Brucei
Length = 300
Score = 156 bits (395), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 117/188 (62%), Gaps = 6/188 (3%)
Query: 17 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLI 76
VLSIQS GYVGNK+A FPLQL G+DVD I++V SNH+GYP +G ++ Q+ +L+
Sbjct: 6 VLSIQSFVTHGYVGNKAATFPLQLHGFDVDGINTVCLSNHSGYPVIRGHRMSLQEYDELM 65
Query: 77 EGLEANNLLY-YTHLLTGYIGSVSFLNTILQVVEKLRSI----NPNLIYVCDPVMGDEGK 131
EG+ ANN L Y ++LTGYI +V + I ++++R + + L ++CDPVMGD+G
Sbjct: 66 EGVRANNFLSNYRYILTGYINNVDIIGRIRDTLKEVRELREKEDKKLTFICDPVMGDDGI 125
Query: 132 LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVI 191
+Y E++ YRE +VP+A ++TPN FEA L+G + + A H G A V+I
Sbjct: 126 MYCKKEVLDAYRE-LVPLADIVTPNYFEASLLSGVTVNDLSSAILAADWFHNCGVAHVII 184
Query: 192 TSINIDGN 199
S N
Sbjct: 185 KSFREQEN 192
>pdb|3PZS|A Chain A, Crystal Structure Of A Pyridoxamine Kinase From Yersinia
Pestis Co92
pdb|3PZS|B Chain B, Crystal Structure Of A Pyridoxamine Kinase From Yersinia
Pestis Co92
Length = 289
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 104/185 (56%), Gaps = 4/185 (2%)
Query: 17 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLI 76
+LSIQSH V G+ GN +A FP + G +V P+++VQFSNHT Y + G V L D++
Sbjct: 7 ILSIQSHVVFGHAGNSAAEFPXRRXGVNVWPLNTVQFSNHTQYGHWTGCVXPASHLTDIV 66
Query: 77 EGL-EANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLY 133
+G+ + + L +L+GYIGS + IL V +++ NP+ Y CDPV G ++G +
Sbjct: 67 QGIADIDRLKDCDAVLSGYIGSPEQGSHILAAVAQVKQANPDAWYFCDPVXGHPEKGCIV 126
Query: 134 VPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 193
P + + + +P + + PN E EQL+G R+ + + + L A GP V++
Sbjct: 127 APG-VAEFFCNEALPASDXIAPNLLELEQLSGERVENVEQAVQVARSLCARGPKVVLVKH 185
Query: 194 INIDG 198
++ G
Sbjct: 186 LSRAG 190
>pdb|1TD2|A Chain A, Crystal Structure Of The Pdxy Protein From Escherichia
Coli
pdb|1TD2|B Chain B, Crystal Structure Of The Pdxy Protein From Escherichia
Coli
Length = 287
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 105/185 (56%), Gaps = 4/185 (2%)
Query: 17 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLI 76
+L+IQSH V G+ GN +A FP++ LG +V P+++VQFSNHT Y + G V+ L +++
Sbjct: 5 ILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIV 64
Query: 77 EGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLY 133
+G+ A + L+ +L+GY+GS IL +V ++++ NP Y CDPVMG ++G +
Sbjct: 65 QGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIV 124
Query: 134 VPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 193
P + + +P + ++ PN E E L + + + A + L A GP V++
Sbjct: 125 APG-VAEFHVRHGLPASDIIAPNLVELEILCEHAVNNVEEAVLAARELIAQGPQIVLVKH 183
Query: 194 INIDG 198
+ G
Sbjct: 184 LARAG 188
>pdb|1VI9|A Chain A, Crystal Structure Of Pyridoxamine Kinase
pdb|1VI9|B Chain B, Crystal Structure Of Pyridoxamine Kinase
pdb|1VI9|C Chain C, Crystal Structure Of Pyridoxamine Kinase
pdb|1VI9|D Chain D, Crystal Structure Of Pyridoxamine Kinase
Length = 299
Score = 103 bits (256), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 102/185 (55%), Gaps = 4/185 (2%)
Query: 17 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLI 76
+L+IQSH V G+ GN +A FP + LG +V P+++VQFSNHT Y + G V L +++
Sbjct: 7 ILAIQSHVVYGHAGNSAAEFPXRRLGANVWPLNTVQFSNHTQYGKWTGXVXPPSHLTEIV 66
Query: 77 EGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLY 133
+G+ A + L+ +L+GY+GS IL +V ++++ NP Y CDPV G ++G +
Sbjct: 67 QGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVXGHPEKGCIV 126
Query: 134 VPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 193
P + + +P + ++ PN E E L + + + A + L A GP V++
Sbjct: 127 APG-VAEFHVRHGLPASDIIAPNLVELEILCEHAVNNVEEAVLAARELIAQGPQIVLVKH 185
Query: 194 INIDG 198
+ G
Sbjct: 186 LARAG 190
>pdb|2DDM|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.1 A Resolution
pdb|2DDM|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.1 A Resolution
pdb|2DDO|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.6 A Resolution
pdb|2DDO|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.6 A Resolution
pdb|2DDW|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene Complexed With Pyridoxal At 3.2 A
Resolution
pdb|2DDW|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene Complexed With Pyridoxal At 3.2 A
Resolution
Length = 283
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 93/179 (51%), Gaps = 2/179 (1%)
Query: 17 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLI 76
++++QS V G VGN AV ++ G +V + +V SN Y TF G + + +
Sbjct: 18 IVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYL 77
Query: 77 EGL-EANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYV 134
L E + L + TGY+G+ S + + + + LR +P+L+ + DPV+GD + +YV
Sbjct: 78 RALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYV 137
Query: 135 PSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 193
+L YR+ ++P+A +TPN FE E LTG A K L + VV+TS
Sbjct: 138 KPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVVTS 196
>pdb|3MBJ|A Chain A, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (Bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.10 A Resolution (Rhombohedral Form)
pdb|3MBH|A Chain A, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|B Chain B, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|C Chain C, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|D Chain D, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|E Chain E, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|F Chain F, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
Length = 291
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 8/163 (4%)
Query: 38 LQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGS 97
L G+ V P+ + SNHT YP F L + + E + + + + TGY+GS
Sbjct: 31 LSSXGFQVCPLPTAVLSNHTQYPGFSFLDLTDEXPKIIAEWKKLE--VQFDAIYTGYLGS 88
Query: 98 VSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREK-VVPVASMLTPN 156
+ + ++ R P+ + V DPV+GD G+LY + V + ++ A ++TPN
Sbjct: 89 PRQIQIVSDFIKDFR--QPDSLIVADPVLGDNGRLYTNFDXEXVKEXRHLITKADVITPN 146
Query: 157 QFEAEQLTG--FRIGS-EADGREACKILHAAGPAKVVITSINI 196
E L ++ S + + +E ++L GP V+ITS+ +
Sbjct: 147 LTELFYLLDEPYKADSTDEELKEYLRLLSDKGPQVVIITSVPV 189
>pdb|2I5B|A Chain A, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|C Chain C, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|D Chain D, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|B Chain B, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|E Chain E, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
Length = 271
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
Query: 55 NHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSI 114
NH +P + QL + +G+ + + TG + +V + + +++ +
Sbjct: 51 NHQVFPIDTDTIR--AQLATITDGIGVDAMK------TGMLPTVDIIELAAKTIKEKQLK 102
Query: 115 NPNLIYVCDPVM---GDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF-RIGS 170
N V DPVM G LY E RE++ P+A+++TPN FEA QL+G + +
Sbjct: 103 N----VVIDPVMVCKGANEVLY--PEHAQALREQLAPLATVITPNLFEASQLSGMDELKT 156
Query: 171 EADGREACKILHAAGPAKVVIT 192
D EA K +HA G VVIT
Sbjct: 157 VDDMIEAAKKIHALGAQYVVIT 178
>pdb|3H74|A Chain A, Crystal Structure Of Pyridoxal Kinase From Lactobacillus
Plantarum
pdb|3HYO|A Chain A, Crystal Structure Of Pyridoxal Kinase From Lactobacillus
Plantarum In Complex With Adp
pdb|3IBQ|A Chain A, Crystal Structure Of Pyridoxal Kinase From Lactobacillus
Plantarum In Complex With Atp
Length = 282
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 10/142 (7%)
Query: 27 GYVGNKSAVFPLQLLGYDVDPIHSVQFSNHT-GYPTFKGQVLNGQQLCDLIEGLEANNLL 85
G + SA+ L YDV + + S HT GY T V++ + L
Sbjct: 16 GGISLSSALPVLTAXQYDVAALPTSLLSTHTSGYGTPA--VVDLSTWLPQVFAHWTRAQL 73
Query: 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLY--VPSELVSVYR 143
++ L GY+GSV+ I +E+ ++++ + V DPV+GD G+LY + V+ R
Sbjct: 74 HFDQALIGYVGSVALCQQITTYLEQ-QTLS---LLVVDPVLGDLGQLYQGFDQDYVAAXR 129
Query: 144 EKVVPVASMLTPNQFEAEQLTG 165
+ ++ A ++ PN EA LTG
Sbjct: 130 Q-LIQQADVILPNTTEAALLTG 150
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 34/49 (69%)
Query: 144 EKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVIT 192
++++ + ++TPN+ EAE+LTG R+ ++ D +A ++LH G V+IT
Sbjct: 175 DELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLIT 223
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 132 LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVI 191
L+ P+ ++ + ++ + N+ EAE LTG +GS AD EA +L G +VVI
Sbjct: 184 LFNPAPAIADLDPQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRG-CQVVI 242
Query: 192 TSINIDGNLFL 202
++ +G + L
Sbjct: 243 ITLGAEGCVVL 253
>pdb|1UB0|A Chain A, Crystal Structure Analysis Of Phosphomethylpyrimidine
Kinase (Thid) From Thermus Thermophilus Hb8
Length = 258
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 121 VCDPVM-GDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACK 179
V DPVM G + E + +E++ P+A ++TPN+ EAE L G I + + EA K
Sbjct: 101 VVDPVMVAKSGDPLLAKEAAAALKERLFPLADLVTPNRLEAEALLGRPIRTLKEAEEAAK 160
Query: 180 ILHAAGPAKVVITSINIDGN 199
L A GP V++ +++G
Sbjct: 161 ALLALGPKAVLLKGGHLEGE 180
>pdb|3RM5|A Chain A, Structure Of Trifunctional Thi20 From Yeast
pdb|3RM5|B Chain B, Structure Of Trifunctional Thi20 From Yeast
Length = 550
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 121 VCDPVM-GDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165
V DPV+ G ++VS+ EKV P A +LTPN E +L G
Sbjct: 123 VVDPVLVATSGSSLAGKDIVSLITEKVAPFADILTPNIPECYKLLG 168
>pdb|1YIQ|A Chain A, Molecular Cloning And Structural Analysis Of
Quinohemoprotein Alcohol Dehydrogenase Adhiig From
Pseudomonas Putida Hk5. Compariison To The Other
Quinohemoprotein Alcohol Dehydrogenase Adhiib Found In
The Same Microorganism
Length = 689
Score = 28.5 bits (62), Expect = 3.2, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 128 DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREA 177
D G +Y+P+ ++S Y E +P A P F++ G R G +G E
Sbjct: 399 DTGLVYIPAHIMSAYYEH-IPEAPKRNP--FKSMYQLGLRTGMMPEGAEG 445
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 19/104 (18%)
Query: 123 DPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKI- 180
DP++GD+ K +++P VS EK++P A + +EQ++ G EA G K+
Sbjct: 598 DPLVGDKLKVVFLPDYCVSA-AEKLIPAADI-------SEQIS--TAGKEASGTGNMKLA 647
Query: 181 LHAA------GPAKVVITSINIDGNLFLIGSHQKEKVGPLCVKG 218
L+ A A V I + N+F+ G H E+V + KG
Sbjct: 648 LNGALTVGTLDGANVEIAEKVGEENIFIFG-HTVEQVKAILAKG 690
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|2ASV|A Chain A, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2ASV|B Chain B, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2AV6|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AV6|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AZD|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
pdb|2AZD|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
Length = 796
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 19/104 (18%)
Query: 123 DPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKI- 180
DP++GD+ K +++P VS EK++P A + +EQ++ G EA G K+
Sbjct: 598 DPLVGDKLKVVFLPDYCVSA-AEKLIPAADI-------SEQIS--TAGKEASGTGNMKLA 647
Query: 181 LHAA------GPAKVVITSINIDGNLFLIGSHQKEKVGPLCVKG 218
L+ A A V I + N+F+ G H E+V + KG
Sbjct: 648 LNGALTVGTLDGANVEIAEKVGEENIFIFG-HTVEQVKAILAKG 690
>pdb|2NAP|A Chain A, Dissimilatory Nitrate Reductase (Nap) From Desulfovibrio
Desulfuricans
pdb|2JIM|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2JIP|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2JIR|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2V45|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
Length = 723
Score = 28.1 bits (61), Expect = 4.0, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Query: 76 IEGLEANNLLYYTHLLTGYI---GSVSF 100
++G+ ANNL++ HL+TG I G+ SF
Sbjct: 314 VQGVFANNLIHNLHLITGQICRPGATSF 341
>pdb|2JIO|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2JIQ|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2V3V|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
Length = 723
Score = 28.1 bits (61), Expect = 4.0, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Query: 76 IEGLEANNLLYYTHLLTGYI---GSVSF 100
++G+ ANNL++ HL+TG I G+ SF
Sbjct: 314 VQGVFANNLIHNLHLITGQICRPGATSF 341
>pdb|1LME|A Chain A, Crystal Structure Of Peptide Deformylase From Thermotoga
Maritima
pdb|1LME|B Chain B, Crystal Structure Of Peptide Deformylase From Thermotoga
Maritima
Length = 176
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 114 INPNLIYVCDPV--MGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFR---I 168
INP ++ + DP + +EG L P V + R K + V T ++ E+L G+
Sbjct: 81 INPEILEI-DPETEVAEEGXLSFPEIFVEIERSKRIKVKYQNTRGEYVEEELEGYAARVF 139
Query: 169 GSEADGREACKILHAAGPAK 188
E D I+ PAK
Sbjct: 140 QHEFDHLNGVLIIDRISPAK 159
>pdb|1XJE|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp-Gdp Complex
pdb|1XJE|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp-Gdp Complex
pdb|1XJN|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|C Chain C, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|D Chain D, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJF|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp Complex
pdb|1XJF|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp Complex
pdb|1XJG|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Udp Complex
pdb|1XJG|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Udp Complex
pdb|1XJJ|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp Complex
pdb|1XJJ|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp Complex
pdb|1XJM|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp Complex
pdb|1XJM|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp Complex
pdb|3O0N|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp And Adenosylcobalamin
pdb|3O0N|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp And Adenosylcobalamin
pdb|3O0O|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosylcobalamin
pdb|3O0O|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosylcobalamin
pdb|3O0Q|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosine
pdb|3O0Q|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosine
Length = 644
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 71 QLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEG 130
+ D GLE N LL YT +T G+ L + QV+ + +NP ++ + + ++G
Sbjct: 496 NIADTSSGLEPNFLLAYTRFVTKEDGTKEPLLYVNQVLRE--KLNPEILKRIEKELIEKG 553
Query: 131 KLY----VPSELVSVY 142
L VP ++ V+
Sbjct: 554 SLKDIPDVPEKIKKVF 569
>pdb|1XJK|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp-Adp Complex
pdb|1XJK|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp-Adp Complex
Length = 644
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 71 QLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEG 130
+ D GLE N LL YT +T G+ L + QV+ + +NP ++ + + ++G
Sbjct: 496 NIADTSSGLEPNFLLAYTRFVTKDDGTKEPLLYVNQVLRE--KLNPEILKRIEKELIEKG 553
Query: 131 KLY----VPSELVSVY 142
L VP ++ V+
Sbjct: 554 SLKDIPDVPEKIKKVF 569
>pdb|2GOU|A Chain A, Structure Of Wild Type, Oxidized Sye1, An Oye Homologue
From S. Oneidensis
pdb|2GQ8|A Chain A, Structure Of Sye1, An Oye Homologue From S. Ondeidensis,
In Complex With P-Hydroxyacetophenone
pdb|2GQ9|A Chain A, Structure Of Sye1, An Oye Homologue From S. Oneidensis, In
Complex With P-Hydroxybenzaldehyde
pdb|2GQA|A Chain A, Structure Of Nadh-Reduced Sye1, An Oye Homologue From S.
Oneidensis
Length = 365
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 154 TPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDG 198
TP + EQ+ G+RI +EA + C I V NIDG
Sbjct: 71 TPGIYTPEQIAGWRIVTEAVHAKGCAIFAQLWHVGRVTHPDNIDG 115
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 134 VPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVIT 192
+P+EL+S+ ++ PN+ EAE L+G ++ +E ++ + G V+IT
Sbjct: 172 LPNELLSLI--------DIIVPNETEAELLSGIKVTNEQSMKDNANYFLSIGIKTVLIT 222
>pdb|2NYA|A Chain A, Crystal Structure Of The Periplasmic Nitrate Reductase
(Nap) From Escherichia Coli
pdb|2NYA|F Chain F, Crystal Structure Of The Periplasmic Nitrate Reductase
(Nap) From Escherichia Coli
Length = 792
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 77 EGLEANNLLYYTHLLTGYI 95
G+ ANNL+Y HLLTG I
Sbjct: 343 RGVWANNLVYNLHLLTGKI 361
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,661,748
Number of Sequences: 62578
Number of extensions: 270149
Number of successful extensions: 600
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 30
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)