Query 027620
Match_columns 221
No_of_seqs 139 out of 1559
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 12:40:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02978 pyridoxal kinase 100.0 7.3E-30 1.6E-34 220.7 22.8 206 1-206 1-206 (308)
2 KOG2599 Pyridoxal/pyridoxine/p 100.0 1.5E-29 3.3E-34 208.1 17.8 200 10-209 5-208 (308)
3 COG0351 ThiD Hydroxymethylpyri 100.0 5.2E-28 1.1E-32 201.6 21.2 196 13-220 2-201 (263)
4 COG2240 PdxK Pyridoxal/pyridox 100.0 2.8E-28 6E-33 204.2 19.5 185 15-199 1-186 (281)
5 PRK08176 pdxK pyridoxal-pyrido 100.0 1.5E-26 3.2E-31 197.7 20.4 183 14-196 15-199 (281)
6 PRK05756 pyridoxamine kinase; 99.9 3.3E-26 7.2E-31 195.9 21.3 183 14-196 1-185 (286)
7 PTZ00344 pyridoxal kinase; Pro 99.9 1.2E-24 2.5E-29 187.3 20.1 184 12-196 2-186 (296)
8 TIGR00687 pyridox_kin pyridoxa 99.9 1.8E-24 3.9E-29 185.1 19.5 184 14-198 1-187 (286)
9 KOG2598 Phosphomethylpyrimidin 99.9 2.1E-25 4.6E-30 193.8 12.3 207 2-221 11-240 (523)
10 PRK07105 pyridoxamine kinase; 99.9 1E-23 2.3E-28 180.3 21.4 188 13-205 3-198 (284)
11 cd01173 pyridoxal_pyridoxamine 99.9 2.3E-23 5.1E-28 175.1 21.0 180 16-196 1-183 (254)
12 TIGR00097 HMP-P_kinase phospho 99.9 1.1E-22 2.4E-27 171.4 19.8 173 17-198 1-176 (254)
13 PRK12412 pyridoxal kinase; Rev 99.9 2.9E-22 6.4E-27 170.1 21.4 173 15-196 2-179 (268)
14 PRK12616 pyridoxal kinase; Rev 99.9 2.6E-22 5.6E-27 170.7 20.9 178 13-196 2-182 (270)
15 PTZ00493 phosphomethylpyrimidi 99.9 1.6E-22 3.4E-27 174.6 19.2 180 13-197 3-192 (321)
16 PF08543 Phos_pyr_kin: Phospho 99.9 2E-22 4.3E-27 169.2 18.6 173 24-205 1-178 (246)
17 PRK06427 bifunctional hydroxy- 99.9 6.9E-22 1.5E-26 167.4 21.3 179 13-199 3-185 (266)
18 cd01169 HMPP_kinase 4-amino-5- 99.9 2.2E-21 4.8E-26 161.8 20.7 174 16-197 1-176 (242)
19 PTZ00347 phosphomethylpyrimidi 99.9 3.1E-21 6.8E-26 177.1 20.8 177 9-196 225-408 (504)
20 PRK08573 phosphomethylpyrimidi 99.9 3.6E-21 7.7E-26 174.3 17.9 175 14-199 2-181 (448)
21 PRK14713 multifunctional hydro 99.9 2.6E-20 5.6E-25 172.0 18.9 178 11-197 26-206 (530)
22 PLN02898 HMP-P kinase/thiamin- 99.8 1.3E-19 2.7E-24 166.5 21.3 176 13-197 8-187 (502)
23 PRK12413 phosphomethylpyrimidi 99.8 1.3E-19 2.8E-24 152.3 16.4 173 13-196 2-176 (253)
24 PRK09517 multifunctional thiam 99.8 2.3E-19 4.9E-24 171.5 19.1 180 9-197 236-418 (755)
25 COG1105 FruK Fructose-1-phosph 99.8 1.5E-18 3.2E-23 148.2 15.9 162 25-203 55-231 (310)
26 PTZ00292 ribokinase; Provision 99.5 5.6E-13 1.2E-17 115.8 11.7 159 25-201 71-249 (326)
27 cd01174 ribokinase Ribokinase 99.5 6.8E-13 1.5E-17 113.1 11.9 154 25-201 55-226 (292)
28 PRK11142 ribokinase; Provision 99.4 8.6E-13 1.9E-17 113.3 11.7 153 25-201 58-229 (306)
29 PRK10294 6-phosphofructokinase 99.4 6.8E-12 1.5E-16 108.3 15.5 158 26-201 58-232 (309)
30 TIGR03828 pfkB 1-phosphofructo 99.4 6.8E-12 1.5E-16 107.6 14.7 159 25-201 54-227 (304)
31 PRK09513 fruK 1-phosphofructok 99.4 1E-11 2.2E-16 107.4 14.1 159 25-201 58-231 (312)
32 cd01166 KdgK 2-keto-3-deoxyglu 99.4 3.8E-12 8.2E-17 108.5 11.3 163 24-201 49-233 (294)
33 PLN02967 kinase 99.4 2.7E-12 5.7E-17 118.8 10.4 166 25-203 262-461 (581)
34 PTZ00247 adenosine kinase; Pro 99.4 3E-12 6.6E-17 112.3 10.2 165 24-202 84-272 (345)
35 PLN02341 pfkB-type carbohydrat 99.4 4.4E-12 9.6E-17 115.8 11.5 165 24-202 137-334 (470)
36 cd01172 RfaE_like RfaE encodes 99.4 1.1E-11 2.5E-16 106.2 13.4 156 24-202 57-234 (304)
37 PLN02543 pfkB-type carbohydrat 99.4 4E-12 8.7E-17 116.2 10.2 166 25-202 191-402 (496)
38 TIGR03168 1-PFK hexose kinase, 99.3 2.2E-11 4.7E-16 104.6 13.9 159 25-201 54-227 (303)
39 cd01164 FruK_PfkB_like 1-phosp 99.3 3.3E-11 7.2E-16 102.9 14.8 159 25-201 55-228 (289)
40 TIGR02198 rfaE_dom_I rfaE bifu 99.3 2.3E-11 4.9E-16 105.0 13.7 153 25-201 66-241 (315)
41 PRK09850 pseudouridine kinase; 99.3 1.4E-11 3.1E-16 106.5 12.0 155 25-202 59-232 (313)
42 TIGR02152 D_ribokin_bact ribok 99.3 1.8E-11 3.8E-16 104.6 12.3 155 25-201 50-222 (293)
43 cd01168 adenosine_kinase Adeno 99.3 8.3E-12 1.8E-16 107.7 9.1 160 24-202 73-249 (312)
44 PRK09954 putative kinase; Prov 99.3 3.9E-11 8.5E-16 105.9 13.6 154 25-201 112-284 (362)
45 PRK13508 tagatose-6-phosphate 99.3 7.8E-11 1.7E-15 101.7 15.0 160 25-201 55-229 (309)
46 TIGR01231 lacC tagatose-6-phos 99.3 1E-10 2.2E-15 101.0 14.9 158 25-201 54-229 (309)
47 cd01941 YeiC_kinase_like YeiC- 99.2 1.4E-10 3E-15 98.7 12.7 157 24-201 53-227 (288)
48 PLN02323 probable fructokinase 99.2 5.8E-11 1.2E-15 103.4 10.5 162 25-203 62-246 (330)
49 COG0524 RbsK Sugar kinases, ri 99.2 1.4E-10 3E-15 100.0 11.8 158 24-203 55-232 (311)
50 PRK15074 inosine/guanosine kin 99.2 6.3E-11 1.4E-15 106.9 9.7 157 24-202 111-293 (434)
51 PLN02813 pfkB-type carbohydrat 99.2 1.6E-10 3.5E-15 104.3 10.5 160 25-201 153-330 (426)
52 PRK11316 bifunctional heptose 99.2 6.4E-10 1.4E-14 101.5 14.4 151 25-200 69-238 (473)
53 PF00294 PfkB: pfkB family car 99.2 1.7E-10 3.6E-15 98.5 9.6 162 25-203 55-235 (301)
54 cd01167 bac_FRK Fructokinases 99.2 1.2E-10 2.6E-15 99.4 8.7 162 24-201 46-227 (295)
55 PLN02548 adenosine kinase 99.2 3.3E-10 7.1E-15 98.8 11.4 163 25-201 74-260 (332)
56 PRK09434 aminoimidazole ribosi 99.1 3E-10 6.5E-15 97.6 10.7 159 24-201 46-227 (304)
57 TIGR00196 yjeF_cterm yjeF C-te 99.1 2.3E-10 5E-15 97.4 9.4 162 13-195 23-186 (272)
58 cd01944 YegV_kinase_like YegV- 99.1 2E-10 4.3E-15 98.0 8.8 158 25-202 54-230 (289)
59 cd00287 ribokinase_pfkB_like r 99.1 8E-10 1.7E-14 88.5 11.5 91 101-201 70-160 (196)
60 cd01171 YXKO-related B.subtili 99.1 7.4E-10 1.6E-14 93.2 10.2 161 13-195 7-174 (254)
61 COG2870 RfaE ADP-heptose synth 99.1 1.8E-09 4E-14 94.5 12.0 155 25-200 69-238 (467)
62 cd01946 ribokinase_group_C Rib 99.0 4.2E-09 9.1E-14 89.4 12.2 152 24-201 42-209 (277)
63 cd01943 MAK32 MAK32 kinase. M 99.0 3.7E-09 8.1E-14 92.3 11.0 162 24-203 49-241 (328)
64 PLN02379 pfkB-type carbohydrat 99.0 3.7E-09 8.1E-14 93.8 9.9 157 25-202 106-281 (367)
65 cd01940 Fructoselysine_kinase_ 98.9 6.1E-09 1.3E-13 87.6 9.7 147 25-201 41-202 (264)
66 cd01945 ribokinase_group_B Rib 98.8 1.8E-08 4E-13 85.5 9.5 145 25-201 55-217 (284)
67 KOG2855 Ribokinase [Carbohydra 98.8 1.4E-08 3.1E-13 87.5 7.6 162 24-203 64-246 (330)
68 cd01170 THZ_kinase 4-methyl-5- 98.8 1.2E-07 2.5E-12 79.6 12.4 97 90-195 55-162 (242)
69 TIGR00694 thiM hydroxyethylthi 98.8 8.8E-08 1.9E-12 80.6 10.9 97 89-195 54-161 (249)
70 cd01942 ribokinase_group_A Rib 98.7 4.3E-08 9.3E-13 82.9 7.5 142 25-201 55-217 (279)
71 cd01939 Ketohexokinase Ketohex 98.6 3.6E-07 7.9E-12 78.0 10.6 148 24-201 54-226 (290)
72 PRK09355 hydroxyethylthiazole 98.6 5.5E-07 1.2E-11 76.4 11.1 100 89-195 59-166 (263)
73 PRK09813 fructoselysine 6-kina 98.5 2E-06 4.2E-11 72.4 12.0 141 24-202 41-200 (260)
74 cd01947 Guanosine_kinase_like 98.4 2.8E-07 6.1E-12 77.5 5.5 72 105-202 134-205 (265)
75 KOG2854 Possible pfkB family c 98.0 3.2E-05 6.9E-10 66.6 8.5 158 24-195 84-266 (343)
76 cd01937 ribokinase_group_D Rib 97.9 4.2E-05 9E-10 63.9 7.6 69 118-200 129-197 (254)
77 COG2145 ThiM Hydroxyethylthiaz 97.4 0.0049 1.1E-07 51.8 12.8 106 90-206 61-181 (265)
78 PF02110 HK: Hydroxyethylthiaz 97.2 0.0026 5.6E-08 53.5 9.3 98 90-197 55-162 (246)
79 PLN02630 pfkB-type carbohydrat 97.0 0.0027 5.8E-08 55.8 7.7 79 101-201 134-217 (335)
80 PRK10565 putative carbohydrate 96.1 0.037 8E-07 51.4 8.9 77 105-194 337-414 (508)
81 KOG3974 Predicted sugar kinase 95.2 0.15 3.2E-06 43.1 8.4 88 97-197 114-204 (306)
82 PRK14039 ADP-dependent glucoki 94.7 0.61 1.3E-05 42.6 11.9 101 87-193 211-331 (453)
83 PRK03979 ADP-specific phosphof 93.8 1.6 3.5E-05 40.1 12.6 114 70-193 210-346 (463)
84 PF01256 Carb_kinase: Carbohyd 93.4 0.22 4.8E-06 41.8 5.9 89 87-193 68-160 (242)
85 TIGR02045 P_fruct_ADP ADP-spec 92.5 3.1 6.8E-05 38.0 12.3 113 70-193 197-332 (446)
86 COG0541 Ffh Signal recognition 92.1 2.1 4.6E-05 38.8 10.7 173 10-216 95-271 (451)
87 PRK14038 ADP-dependent glucoki 91.2 3 6.5E-05 38.2 10.8 100 87-193 225-342 (453)
88 PRK10076 pyruvate formate lyas 91.1 7.6 0.00017 31.9 12.8 105 64-187 16-129 (213)
89 COG0063 Predicted sugar kinase 90.4 1.6 3.5E-05 37.5 7.9 68 150-219 153-224 (284)
90 PRK04165 acetyl-CoA decarbonyl 85.7 29 0.00063 31.9 14.5 117 66-195 101-235 (450)
91 PF04587 ADP_PFK_GK: ADP-speci 83.5 7.2 0.00016 35.7 8.5 99 87-192 210-333 (444)
92 KOG3009 Predicted carbohydrate 76.4 13 0.00028 34.2 7.5 147 26-198 376-533 (614)
93 COG1180 PflA Pyruvate-formate 72.6 58 0.0013 27.5 10.8 86 89-187 87-174 (260)
94 COG1058 CinA Predicted nucleot 70.9 9.3 0.0002 32.4 5.0 35 17-51 6-43 (255)
95 KOG2947 Carbohydrate kinase [C 70.1 11 0.00024 31.9 5.1 134 34-192 73-226 (308)
96 COG3033 TnaA Tryptophanase [Am 70.0 14 0.00031 33.1 6.0 81 98-218 202-282 (471)
97 COG0194 Gmk Guanylate kinase [ 68.8 61 0.0013 26.2 12.7 134 14-173 3-142 (191)
98 cd06533 Glyco_transf_WecG_TagA 66.0 62 0.0014 25.3 11.3 99 70-195 33-133 (171)
99 COG3589 Uncharacterized conser 63.6 39 0.00086 29.8 7.5 110 74-186 17-135 (360)
100 KOG1615 Phosphoserine phosphat 62.8 8.9 0.00019 31.3 3.2 50 146-195 64-114 (227)
101 TIGR00334 5S_RNA_mat_M5 ribonu 60.9 84 0.0018 25.0 8.4 75 98-182 32-109 (174)
102 cd04725 OMP_decarboxylase_like 60.2 79 0.0017 25.7 8.5 37 87-128 24-60 (216)
103 PF00448 SRP54: SRP54-type pro 59.1 72 0.0016 25.6 8.0 37 15-51 1-38 (196)
104 COG1313 PflX Uncharacterized F 57.8 49 0.0011 28.8 6.9 88 64-167 146-238 (335)
105 cd01938 ADPGK_ADPPFK ADP-depen 56.2 70 0.0015 29.4 8.2 72 87-164 206-285 (445)
106 TIGR02351 thiH thiazole biosyn 54.2 1.2E+02 0.0026 26.8 9.3 110 65-187 101-216 (366)
107 PRK13397 3-deoxy-7-phosphohept 54.0 80 0.0017 26.7 7.6 80 101-195 65-160 (250)
108 PRK11572 copper homeostasis pr 53.3 1.3E+02 0.0028 25.4 8.7 56 67-126 67-124 (248)
109 COG1830 FbaB DhnA-type fructos 50.8 1.3E+02 0.0028 25.7 8.3 68 90-159 118-189 (265)
110 PRK03659 glutathione-regulated 50.4 1.4E+02 0.0031 28.4 9.6 109 34-165 415-527 (601)
111 PRK05301 pyrroloquinoline quin 49.6 1.8E+02 0.004 25.6 12.8 68 66-144 45-112 (378)
112 TIGR02109 PQQ_syn_pqqE coenzym 49.1 1.8E+02 0.0039 25.3 11.9 69 65-144 35-103 (358)
113 PF03808 Glyco_tran_WecB: Glyc 48.3 21 0.00046 28.0 3.2 100 70-195 35-135 (172)
114 PF03932 CutC: CutC family; I 48.2 72 0.0016 26.0 6.3 57 67-127 66-124 (201)
115 TIGR03586 PseI pseudaminic aci 47.1 1.3E+02 0.0029 26.4 8.2 78 100-191 75-166 (327)
116 PF02571 CbiJ: Precorrin-6x re 47.1 34 0.00074 28.8 4.4 24 172-195 116-139 (249)
117 COG4750 LicC CTP:phosphocholin 47.0 48 0.001 27.1 4.9 70 41-127 8-78 (231)
118 TIGR01306 GMP_reduct_2 guanosi 45.5 1.6E+02 0.0034 25.9 8.3 104 66-195 65-168 (321)
119 COG4474 Uncharacterized protei 45.5 1.5E+02 0.0034 23.5 8.5 84 89-185 46-130 (180)
120 cd02067 B12-binding B12 bindin 44.9 89 0.0019 22.4 5.9 78 66-161 36-114 (119)
121 cd02752 MopB_Formate-Dh-Na-lik 44.7 1.4E+02 0.0031 28.8 8.7 26 156-184 242-267 (649)
122 PRK08508 biotin synthase; Prov 43.8 2E+02 0.0044 24.4 12.0 110 67-186 40-151 (279)
123 COG2099 CobK Precorrin-6x redu 42.5 55 0.0012 27.7 4.9 25 172-197 115-139 (257)
124 PRK11145 pflA pyruvate formate 42.5 1.9E+02 0.0041 23.7 10.4 109 64-187 48-163 (246)
125 PRK03562 glutathione-regulated 41.7 2E+02 0.0044 27.5 9.2 108 34-164 415-526 (621)
126 TIGR02826 RNR_activ_nrdG3 anae 40.1 1.7E+02 0.0036 22.4 7.0 79 64-161 43-121 (147)
127 TIGR01361 DAHP_synth_Bsub phos 40.0 1.2E+02 0.0027 25.6 6.7 78 101-193 75-167 (260)
128 PF00215 OMPdecase: Orotidine 39.6 1.6E+02 0.0034 24.0 7.2 64 86-157 25-93 (226)
129 TIGR03278 methan_mark_10 putat 39.6 2.9E+02 0.0063 25.0 13.1 111 63-183 50-165 (404)
130 PRK12399 tagatose 1,6-diphosph 39.6 1.5E+02 0.0033 26.0 7.2 94 101-197 141-252 (324)
131 COG3107 LppC Putative lipoprot 39.3 93 0.002 29.4 6.2 84 101-195 305-394 (604)
132 PRK10867 signal recognition pa 38.8 3.1E+02 0.0067 25.1 13.8 81 99-193 167-249 (433)
133 KOG1301 Vesicle trafficking pr 38.6 36 0.00079 31.9 3.4 77 34-114 59-135 (621)
134 COG5016 Pyruvate/oxaloacetate 37.7 2.1E+02 0.0045 26.2 7.9 87 91-193 89-177 (472)
135 TIGR00696 wecB_tagA_cpsF bacte 37.5 62 0.0013 25.7 4.3 45 70-122 35-79 (177)
136 TIGR01305 GMP_reduct_1 guanosi 37.0 3E+02 0.0066 24.4 8.9 103 67-195 78-181 (343)
137 PRK12595 bifunctional 3-deoxy- 36.9 1.8E+02 0.0038 26.0 7.5 81 100-195 167-263 (360)
138 TIGR02491 NrdG anaerobic ribon 36.8 98 0.0021 23.7 5.3 59 64-124 43-102 (154)
139 cd06533 Glyco_transf_WecG_TagA 36.6 76 0.0016 24.8 4.7 103 101-220 32-135 (171)
140 PRK06354 pyruvate kinase; Prov 36.5 3.9E+02 0.0085 25.6 10.4 132 65-214 174-327 (590)
141 cd04890 ACT_AK-like_1 ACT doma 35.8 61 0.0013 20.2 3.4 34 17-50 2-36 (62)
142 PF13986 DUF4224: Domain of un 35.4 81 0.0018 19.2 3.7 31 155-190 3-33 (47)
143 TIGR01769 GGGP geranylgeranylg 35.3 2E+02 0.0043 23.5 7.0 49 71-125 12-61 (205)
144 PF03808 Glyco_tran_WecB: Glyc 35.1 2.2E+02 0.0047 22.2 11.0 102 101-220 34-137 (172)
145 COG0269 SgbH 3-hexulose-6-phos 34.5 2.7E+02 0.0058 23.1 7.6 89 98-195 37-140 (217)
146 PRK13305 sgbH 3-keto-L-gulonat 33.6 80 0.0017 26.0 4.5 39 87-128 29-67 (218)
147 PF03102 NeuB: NeuB family; I 32.7 2.4E+02 0.0051 23.6 7.2 77 101-191 55-145 (241)
148 KOG4184 Predicted sugar kinase 32.5 1.1E+02 0.0024 27.4 5.3 73 86-164 238-316 (478)
149 TIGR03569 NeuB_NnaB N-acetylne 32.4 2.8E+02 0.006 24.4 7.9 74 100-187 74-161 (329)
150 PF11965 DUF3479: Domain of un 32.4 1.7E+02 0.0036 23.1 5.9 50 68-123 44-93 (164)
151 PF13941 MutL: MutL protein 31.1 4.3E+02 0.0094 24.4 12.2 80 117-197 178-259 (457)
152 PRK11121 nrdG anaerobic ribonu 30.9 2.4E+02 0.0053 21.5 8.3 85 64-156 44-129 (154)
153 PRK08445 hypothetical protein; 30.5 3.8E+02 0.0082 23.6 9.6 115 66-187 72-197 (348)
154 PRK05826 pyruvate kinase; Prov 30.4 4.5E+02 0.0096 24.4 9.5 128 66-214 170-322 (465)
155 cd00288 Pyruvate_Kinase Pyruva 30.3 4.5E+02 0.0098 24.4 9.7 127 66-214 171-322 (480)
156 PRK00125 pyrF orotidine 5'-pho 29.0 3.7E+02 0.008 23.0 8.1 47 102-156 73-122 (278)
157 cd00368 Molybdopterin-Binding 29.0 1.8E+02 0.0039 25.1 6.3 26 158-186 220-245 (374)
158 PF01729 QRPTase_C: Quinolinat 28.1 2.6E+02 0.0056 22.0 6.4 71 104-197 66-137 (169)
159 cd02766 MopB_3 The MopB_3 CD i 27.9 4.4E+02 0.0096 24.3 8.9 32 158-192 256-287 (501)
160 cd02071 MM_CoA_mut_B12_BD meth 27.8 2.4E+02 0.0052 20.5 6.3 27 87-114 51-77 (122)
161 PRK04161 tagatose 1,6-diphosph 27.7 4.3E+02 0.0093 23.3 8.4 94 101-197 143-254 (329)
162 cd02069 methionine_synthase_B1 26.9 2.1E+02 0.0046 23.3 5.9 86 64-163 123-208 (213)
163 TIGR02617 tnaA_trp_ase tryptop 26.6 92 0.002 28.8 4.0 25 98-124 200-224 (467)
164 COG0269 SgbH 3-hexulose-6-phos 26.6 3.3E+02 0.0071 22.5 6.8 82 100-196 91-174 (217)
165 cd02070 corrinoid_protein_B12- 26.5 2.2E+02 0.0048 22.7 6.0 81 64-164 117-199 (201)
166 smart00642 Aamy Alpha-amylase 26.3 80 0.0017 24.6 3.2 25 101-127 69-93 (166)
167 TIGR03595 Obg_CgtA_exten Obg f 26.3 34 0.00073 22.7 0.9 38 166-203 25-62 (69)
168 PF04015 DUF362: Domain of unk 26.2 69 0.0015 25.6 2.9 26 170-195 21-46 (206)
169 TIGR00510 lipA lipoate synthas 26.0 1E+02 0.0023 26.7 4.1 28 170-197 92-119 (302)
170 cd04235 AAK_CK AAK_CK: Carbama 25.3 2.6E+02 0.0056 24.4 6.4 101 18-123 73-187 (308)
171 PRK03673 hypothetical protein; 25.3 1.7E+02 0.0037 26.5 5.5 27 25-51 14-43 (396)
172 PLN00124 succinyl-CoA ligase [ 25.3 5.3E+02 0.011 23.6 9.2 54 67-122 328-382 (422)
173 PRK13396 3-deoxy-7-phosphohept 25.2 4.4E+02 0.0095 23.5 7.9 73 105-192 154-242 (352)
174 PF10686 DUF2493: Protein of u 25.1 1.5E+02 0.0032 19.8 3.8 28 171-198 17-44 (71)
175 COG1099 Predicted metal-depend 24.8 4.2E+02 0.0091 22.3 11.2 123 66-194 76-211 (254)
176 KOG3341 RNA polymerase II tran 24.5 1.3E+02 0.0029 24.9 4.2 27 169-195 137-163 (249)
177 PRK14042 pyruvate carboxylase 24.3 4E+02 0.0086 25.6 7.9 81 98-192 92-174 (596)
178 cd02767 MopB_ydeP The MopB_yde 24.3 5.5E+02 0.012 24.4 8.9 35 89-126 167-202 (574)
179 PRK08057 cobalt-precorrin-6x r 24.2 1.2E+02 0.0026 25.5 4.0 21 173-195 116-136 (248)
180 PRK15447 putative protease; Pr 24.1 4.6E+02 0.01 22.5 9.4 114 67-192 12-138 (301)
181 PRK12330 oxaloacetate decarbox 23.8 3.5E+02 0.0075 25.4 7.3 79 99-192 94-175 (499)
182 cd00958 DhnA Class I fructose- 23.8 3.9E+02 0.0086 21.6 9.9 54 100-157 107-164 (235)
183 PF05378 Hydant_A_N: Hydantoin 23.7 1.1E+02 0.0024 24.1 3.6 25 170-194 132-156 (176)
184 COG2100 Predicted Fe-S oxidore 23.7 5.3E+02 0.012 23.0 8.4 85 101-192 174-261 (414)
185 COG1121 ZnuC ABC-type Mn/Zn tr 23.6 93 0.002 26.4 3.3 44 145-192 153-196 (254)
186 TIGR01740 pyrF orotidine 5'-ph 23.6 3.9E+02 0.0085 21.5 7.5 36 87-127 24-59 (213)
187 PRK02261 methylaspartate mutas 23.4 2.9E+02 0.0063 20.7 5.7 12 37-48 26-37 (137)
188 PRK13762 tRNA-modifying enzyme 23.3 5E+02 0.011 22.6 10.6 82 98-189 141-225 (322)
189 TIGR03649 ergot_EASG ergot alk 23.3 4.3E+02 0.0092 21.8 7.8 92 25-123 7-103 (285)
190 TIGR01358 DAHP_synth_II 3-deox 23.3 2.8E+02 0.006 25.5 6.3 58 64-124 287-346 (443)
191 PF05913 DUF871: Bacterial pro 23.2 2.1E+02 0.0045 25.5 5.6 54 69-127 13-70 (357)
192 KOG0780 Signal recognition par 23.2 5.9E+02 0.013 23.4 13.0 107 97-218 165-274 (483)
193 COG2248 Predicted hydrolase (m 22.9 2.4E+02 0.0051 24.2 5.4 60 109-197 18-77 (304)
194 PLN02291 phospho-2-dehydro-3-d 22.7 2.8E+02 0.006 25.7 6.2 58 64-124 307-366 (474)
195 KOG0256 1-aminocyclopropane-1- 22.7 4.3E+02 0.0094 24.3 7.3 61 64-127 205-269 (471)
196 PF04412 DUF521: Protein of un 22.5 2.5E+02 0.0055 25.5 6.0 57 66-124 269-327 (400)
197 TIGR02026 BchE magnesium-proto 22.3 4.5E+02 0.0098 24.3 7.8 99 34-161 28-127 (497)
198 COG1712 Predicted dinucleotide 22.3 4.8E+02 0.01 22.0 7.7 29 169-197 68-96 (255)
199 PF00128 Alpha-amylase: Alpha 22.2 1E+02 0.0022 25.5 3.3 25 101-127 51-75 (316)
200 cd04910 ACT_AK-Ectoine_1 ACT d 22.2 1.1E+02 0.0023 20.5 2.7 30 17-46 3-33 (71)
201 PF01645 Glu_synthase: Conserv 22.1 58 0.0013 29.1 1.8 51 139-197 163-214 (368)
202 PTZ00413 lipoate synthase; Pro 22.1 1.4E+02 0.003 27.1 4.1 29 169-197 177-205 (398)
203 PRK06498 isocitrate lyase; Pro 21.9 6.7E+02 0.015 23.6 8.7 88 100-195 357-454 (531)
204 TIGR01768 GGGP-family geranylg 21.9 2.9E+02 0.0064 22.8 5.8 36 87-125 28-63 (223)
205 PRK13982 bifunctional SbtC-lik 21.8 3.1E+02 0.0068 25.5 6.5 78 117-197 180-267 (475)
206 PF00392 GntR: Bacterial regul 21.8 1.6E+02 0.0035 18.6 3.6 30 154-186 24-53 (64)
207 smart00345 HTH_GNTR helix_turn 21.3 1.9E+02 0.0041 17.3 3.8 30 154-186 20-49 (60)
208 PRK12928 lipoyl synthase; Prov 21.3 1.6E+02 0.0035 25.3 4.4 28 170-197 88-115 (290)
209 PRK14725 pyruvate kinase; Prov 21.2 7E+02 0.015 24.1 8.8 38 87-126 501-544 (608)
210 PF02679 ComA: (2R)-phospho-3- 21.1 2.1E+02 0.0046 24.1 4.9 61 56-122 11-72 (244)
211 PF10943 DUF2632: Protein of u 20.7 32 0.00069 26.7 -0.1 8 214-221 184-191 (233)
212 TIGR02495 NrdG2 anaerobic ribo 20.4 4.1E+02 0.0089 20.5 12.7 108 66-190 46-158 (191)
213 PRK09206 pyruvate kinase; Prov 20.4 7E+02 0.015 23.2 11.0 129 65-214 168-321 (470)
214 COG1646 Predicted phosphate-bi 20.4 1.6E+02 0.0035 24.7 3.9 36 87-125 42-78 (240)
215 PF13730 HTH_36: Helix-turn-he 20.4 2E+02 0.0043 17.4 3.6 30 153-185 24-53 (55)
216 PF12404 DUF3663: Peptidase ; 20.3 1.6E+02 0.0035 20.1 3.3 23 171-193 37-59 (77)
217 cd01409 SIRT4 SIRT4: Eukaryoti 20.3 1.6E+02 0.0034 24.9 4.0 55 63-126 186-241 (260)
No 1
>PLN02978 pyridoxal kinase
Probab=99.97 E-value=7.3e-30 Score=220.74 Aligned_cols=206 Identities=84% Similarity=1.314 Sum_probs=184.6
Q ss_pred CCCCeeeccCCCCCCeEEEEeccCccCccchhhcHHHHHhcCCceeeeeeEEeecCCCCCccceeeCCHHHHHHHHHHHH
Q 027620 1 MAPPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLE 80 (221)
Q Consensus 1 ~~~~~~~~~~~~~~~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v~~~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~ 80 (221)
|+||.+.......+++||+|+++|..|++|+.+..-.|+.+|+++..++|+..+|++||..+.|..++.++++.+++.++
T Consensus 1 ~~~~~~~~~~~~~~~~vl~iqs~~~~g~~g~~~a~~pl~~~g~~v~~lpTv~lSnhtgy~~~~~~~~~~~~~~~~l~~~~ 80 (308)
T PLN02978 1 MAPPVLSLALPSSTGRVLSIQSHTVHGYVGNKSAVFPLQLLGFDVDPINSVQFSNHTGYPTFKGQVLDGEQLWALIEGLE 80 (308)
T ss_pred CCcchhccccCCCCCcEEEEeCeeeecCCCceehHhhHHHcCCeeeeeccEeecCCCCCCCceeeeCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999996655569999999999999988899999888889999889999999998
Q ss_pred hcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHH
Q 027620 81 ANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEA 160 (221)
Q Consensus 81 ~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea 160 (221)
....+.++++++||+++....+.+.++++.+++.++++++++||++++.|.+|.+++..+.+++.+++.+|+++||++|+
T Consensus 81 ~~~~~~~~ai~~G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~~adiitPN~~Ea 160 (308)
T PLN02978 81 ANGLLFYTHLLTGYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVPLATMLTPNQFEA 160 (308)
T ss_pred HcCCcccCEEEecccCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHHhhCCeeccCHHHH
Confidence 88776789999999999999999999999998754578899999999888877778888888756999999999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEEEEEee
Q 027620 161 EQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSH 206 (221)
Q Consensus 161 ~~l~g~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~~~~~~ 206 (221)
+.|+|.++.+.+++.++++++.++|++.|+||.++.+|..+...|.
T Consensus 161 ~~L~g~~~~~~~~~~~a~~~l~~~g~~~VVITs~~~~~~~~~~~~~ 206 (308)
T PLN02978 161 EQLTGIRIVTEEDAREACAILHAAGPSKVVITSIDIDGKLLLVGSH 206 (308)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhCCCEEEEEEecCCCCEEEEEec
Confidence 9999988878888999999999999999999999877766555554
No 2
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=99.97 E-value=1.5e-29 Score=208.11 Aligned_cols=200 Identities=59% Similarity=0.928 Sum_probs=182.9
Q ss_pred CCCCCCeEEEEeccCccCccchhhcHHHHHhcCCceeeeeeEEeecCCCCCccceeeCCHHHHHHHHHHHHhcCcccccE
Q 027620 10 LPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH 89 (221)
Q Consensus 10 ~~~~~~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v~~~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~~ 89 (221)
-..++++|||||++..-|+||+.+.-..|+-+|.+++.+.++..+||+||..+.|..++++++.++++.+..+....+++
T Consensus 5 ~~~~~kRVLSIQShVvhGYVGNkaAtFPLQllGwdVD~insVqFSNHtGY~~~kG~~~~~~eL~dL~egl~~nn~~~Y~~ 84 (308)
T KOG2599|consen 5 TMETTKRVLSIQSHVVHGYVGNKAATFPLQLLGWDVDVINSVQFSNHTGYAHVKGQVLNEEELEDLYEGLLLNNLNKYDA 84 (308)
T ss_pred cccCCccEEEEeeeeeeeeccccccccchhhhccccccccceeeccccCCccccccccCHHHHHHHHHHHhhccccccce
Confidence 35689999999999999999999999999999999999999999999999999999999999999999988777667899
Q ss_pred EEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCC
Q 027620 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIG 169 (221)
Q Consensus 90 v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~ 169 (221)
+++||+|+....+.+.++++++|+.+|+..-++||++.+.|+++.+++.+..+|+.+.+.+|+++||..|++.|+|.++.
T Consensus 85 vLTGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~~i~~ladiiTPNqFE~EiLtg~~I~ 164 (308)
T KOG2599|consen 85 VLTGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRDLIIPLADIITPNQFEAEILTGMEIR 164 (308)
T ss_pred eeeeccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHHHhhcchhhhcCCcchhhhhhcCCeec
Confidence 99999999888999999999999999999999999999999999999999999996666799999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEeeeeeC---Cc-EEEEEeeccC
Q 027620 170 SEADGREACKILHAAGPAKVVITSINID---GN-LFLIGSHQKE 209 (221)
Q Consensus 170 s~~~~~~a~~~L~~~G~~~VvVT~G~~~---~~-~~~~~~~~~~ 209 (221)
|++++.++.+.|+++|++.||||..... |. .+-.+|.++.
T Consensus 165 t~eda~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~ 208 (308)
T KOG2599|consen 165 TEEDAKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSCGS 208 (308)
T ss_pred cHHHHHHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEeccCC
Confidence 9999999999999999999999998866 43 4555775444
No 3
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=99.96 E-value=5.2e-28 Score=201.58 Aligned_cols=196 Identities=26% Similarity=0.364 Sum_probs=159.7
Q ss_pred CCCeEEEEeccCccCccchhhcHHHHHhcCC-ceeeeeeEEeecCCCCCccceeeCCHHHHHHHHHHHHhcCcccccEEE
Q 027620 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGY-DVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (221)
Q Consensus 13 ~~~~vl~i~~~~~~G~vG~d~~~~~l~~~gi-~~~~v~~~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~~v~ 91 (221)
.+|.+|+|.|+|+.|..|..+++++++.+|+ .++.++..+.||+.+...+ .+++++.++++++.+-+. +.+++++
T Consensus 2 ~~~~~LtIAGsD~sGGAGIqADLKTf~a~gvyg~saITaltaQNt~gV~~v--~~v~~~~v~~Ql~av~~D--~~v~avK 77 (263)
T COG0351 2 KLPVVLTIAGSDSSGGAGIQADLKTFQALGVYGMSAITALTAQNTLGVHGV--HPVPPEFVEAQLDAVFSD--IPVDAVK 77 (263)
T ss_pred CCceEEEEeccCCCccHHHHHHHHHHHhcCCccceEEEEEEEeecCceeeE--EeCCHHHHHHHHHHHhhc--CCCCEEE
Confidence 4689999999999999999999999999995 7777777788998885544 467777777776664332 2578999
Q ss_pred EeecCChhHHHHHHHHHHHHHhcCCC-CeEEEccccc-CCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCC-CC
Q 027620 92 TGYIGSVSFLNTILQVVEKLRSINPN-LIYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF-RI 168 (221)
Q Consensus 92 ~G~l~~~~~~~~i~~~i~~ak~~~~~-~~vvlDp~~~-~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~-~~ 168 (221)
+||+++....+.+ .+.++++ + .++|+||++. .+|..+..++..+.++++|+|++++++||..||+.|.|. ++
T Consensus 78 tGML~~~eiie~v---a~~l~~~--~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g~~~i 152 (263)
T COG0351 78 TGMLGSAEIIEVV---AEKLKKY--GIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEALSGLPKI 152 (263)
T ss_pred ECCcCCHHHHHHH---HHHHHhc--CCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHHcCCCcc
Confidence 9999975555554 4555555 3 5699999997 577778899999999988999999999999999999994 89
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEEEEEeeccCCCcceeecCCC
Q 027620 169 GSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKVGPLCVKGLW 220 (221)
Q Consensus 169 ~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (221)
.+.+++.++++.+.++|+++|+||+|+..|....+.|..+ ++..|++.+
T Consensus 153 ~~~~d~~~a~~~i~~~g~~~VliKGGH~~~~~~D~l~~~~---~~~~f~~~r 201 (263)
T COG0351 153 KTEEDMKEAAKLLHELGAKAVLIKGGHLEGEAVDVLYDGG---SFYTFEAPR 201 (263)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCCCCCCCceeEEEcCC---ceEEEeccc
Confidence 9999999999999999999999999999986666677432 555555544
No 4
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=99.96 E-value=2.8e-28 Score=204.24 Aligned_cols=185 Identities=47% Similarity=0.784 Sum_probs=171.9
Q ss_pred CeEEEEeccCccCccchhhcHHHHHhcCCceeeeeeEEeecCCCCCccceeeCCHHHHHHHHHHHHhcCcc-cccEEEEe
Q 027620 15 GRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLL-YYTHLLTG 93 (221)
Q Consensus 15 ~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v~~~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l-~~~~v~~G 93 (221)
|+||+|+++...|++|+.+....|+.+|++++.++|+..+||+++....|..++++++..+++.|...+++ .+|+|++|
T Consensus 1 k~vlaIqShVv~G~vGn~AA~f~lq~~G~~V~~vpTV~fSnHtgyg~~~g~v~~~e~l~~~l~~l~~~~~~~~~davltG 80 (281)
T COG2240 1 KRILAIQSHVVYGSVGNSAAIFPLQRLGLDVWAVPTVQFSNHTGYGKWTGIVMPPEQLADLLNGLEAIDKLGECDAVLTG 80 (281)
T ss_pred CcEEEEeeeEeecccccHhHHHHHHHcCCceeeeceEEecCCCCCCCCCCcCCCHHHHHHHHHHHHhcccccccCEEEEc
Confidence 68999999999999999999999999999999999998899999987778888899999999999885443 49999999
Q ss_pred ecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCCHHH
Q 027620 94 YIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEAD 173 (221)
Q Consensus 94 ~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s~~~ 173 (221)
|+++..+.+.+..+++..|+.+|++.+++||++.+.|.+|..++..+.++.+++|.+|+++||..|++.|+|.++++.++
T Consensus 81 Ylgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fELe~Ltg~~~~~~~d 160 (281)
T COG2240 81 YLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFELEILTGKPLNTLDD 160 (281)
T ss_pred cCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHHHHHHhCCCCCCHHH
Confidence 99999999999999999999999999999999999888888999999999779999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEEeeeeeCCc
Q 027620 174 GREACKILHAAGPAKVVITSINIDGN 199 (221)
Q Consensus 174 ~~~a~~~L~~~G~~~VvVT~G~~~~~ 199 (221)
+.++++.|.++|++.|+||.=...+.
T Consensus 161 a~~aa~~L~~~gp~~vlVTS~~~~~~ 186 (281)
T COG2240 161 AVKAARKLGADGPKIVLVTSLSRAGM 186 (281)
T ss_pred HHHHHHHHhhcCCCEEEEecccccCC
Confidence 99999999999999999998776444
No 5
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.95 E-value=1.5e-26 Score=197.74 Aligned_cols=183 Identities=33% Similarity=0.491 Sum_probs=161.3
Q ss_pred CCeEEEEeccCccCccchhhcHHHHHhcCCceeeeeeEEeecCCCCCccceeeCCHHHHHHHHHHHHhcCcc-cccEEEE
Q 027620 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLL-YYTHLLT 92 (221)
Q Consensus 14 ~~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v~~~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l-~~~~v~~ 92 (221)
|+.||+|+++.+.|++|+...+..|+..|++++.++++..+++++|..+.+..++++.+.++++.+.....+ .++++++
T Consensus 15 ~~~vl~i~~~~~~G~v~~~~a~~~l~~~G~~v~~lpTv~~s~~~~y~~~~~~~~~~~~i~~~l~~~~~~~~l~~~d~i~~ 94 (281)
T PRK08176 15 QADIVAVQSQVVYGSVGNSIAVPAIKANGLRVFAVPTVLLSNTPHYPTFYGGAIPDEWFSGYLRALQERDALRQLRAVTT 94 (281)
T ss_pred cceEEEEeceeeecccccHHHHHHHHHcCCcccccceEeecCCCCCCCcCCeeCCHHHHHHHHHHHHhcCccccCCEEEE
Confidence 677999999999999999999999999999999999997789999877777788889999999988776533 6899999
Q ss_pred eecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCC-CCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCCH
Q 027620 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSE 171 (221)
Q Consensus 93 G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~-~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s~ 171 (221)
||+++....+.+.++++..+..+|+.++++||++++.+. +|.+++..+.+++.+++++|+++||..|++.|+|.++.+.
T Consensus 95 G~l~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g~~~~~~ 174 (281)
T PRK08176 95 GYMGSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFELEILTGKPCRTL 174 (281)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCHHHHHHHhCCCCCCH
Confidence 999998989999999888776445788999999986553 6667777788876699999999999999999999888888
Q ss_pred HHHHHHHHHHHHcCCCeEEEeeeee
Q 027620 172 ADGREACKILHAAGPAKVVITSINI 196 (221)
Q Consensus 172 ~~~~~a~~~L~~~G~~~VvVT~G~~ 196 (221)
+++.+++++|+++|++.|+||+|+.
T Consensus 175 ~~~~~~~~~l~~~g~~~VvIT~g~~ 199 (281)
T PRK08176 175 DSAIAAAKSLLSDTLKWVVITSAAG 199 (281)
T ss_pred HHHHHHHHHHHhcCCCEEEEeeccC
Confidence 8899999999999999999999984
No 6
>PRK05756 pyridoxamine kinase; Validated
Probab=99.95 E-value=3.3e-26 Score=195.93 Aligned_cols=183 Identities=40% Similarity=0.687 Sum_probs=161.7
Q ss_pred CCeEEEEeccCccCccchhhcHHHHHhcCCceeeeeeEEeecCCCCCccceeeCCHHHHHHHHHHHHhcCcc-cccEEEE
Q 027620 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLL-YYTHLLT 92 (221)
Q Consensus 14 ~~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v~~~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l-~~~~v~~ 92 (221)
||+||+|+++++.|++|+.+++..|+.+|+++..++|+..+++++|..+.|..+++++++.+++.++....+ .++++++
T Consensus 1 ~~~il~i~~~~~~G~~g~~~~~~~l~~~g~~~~~~~T~~~s~~t~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 80 (286)
T PRK05756 1 MKNILSIQSHVVYGHVGNSAAVFPMQRLGVNVWPLNTVQFSNHTGYGKWTGCVMPPSHLTEIVQGIADIGWLGECDAVLS 80 (286)
T ss_pred CCcEEEEeceeecccccchhHHHHHHHcCCcceeeceEeecCCCCCCCccCeeCCHHHHHHHHHHHHhcCccccCCEEEE
Confidence 689999999999999999999999999999999999987678888776778999989999999998765432 4778999
Q ss_pred eecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccC-CCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCCH
Q 027620 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSE 171 (221)
Q Consensus 93 G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~-~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s~ 171 (221)
||+++....+.+.++++.+++..|...+++||++++ .+..|.+++..+.+++.+++++|+++||..|++.|+|.++.+.
T Consensus 81 G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea~~L~g~~~~~~ 160 (286)
T PRK05756 81 GYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFELEWLSGRPVETL 160 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHHHHHhCCCcCCH
Confidence 999999999999999999987644567999999987 4446677788888887799999999999999999999888888
Q ss_pred HHHHHHHHHHHHcCCCeEEEeeeee
Q 027620 172 ADGREACKILHAAGPAKVVITSINI 196 (221)
Q Consensus 172 ~~~~~a~~~L~~~G~~~VvVT~G~~ 196 (221)
+++.+++++|+++|++.|+||+|+.
T Consensus 161 ~~~~~~~~~l~~~g~~~Vvvt~g~~ 185 (286)
T PRK05756 161 EDAVAAARALIARGPKIVLVTSLAR 185 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccc
Confidence 8999999999999999999999985
No 7
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.93 E-value=1.2e-24 Score=187.33 Aligned_cols=184 Identities=52% Similarity=0.876 Sum_probs=158.2
Q ss_pred CCCCeEEEEeccCccCccchhhcHHHHHhcCCceeeeeeEEeecCCCCCccceeeCCHHHHHHHHHHHHhcCc-ccccEE
Q 027620 12 SETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNL-LYYTHL 90 (221)
Q Consensus 12 ~~~~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v~~~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~-l~~~~v 90 (221)
+.||+||+|+++++.|++|....+..++.+|+++..+.++..++++++..+.|+.+++++++++++.+..... ..+++|
T Consensus 2 ~~~~~vl~i~~~~~~G~~G~~~~~~~l~~~g~~~~~~~tv~ls~~~~~~~~~g~~i~~~~~~~~l~~l~~~~~~~~~~~v 81 (296)
T PTZ00344 2 SMEKKVLSIQSHVTHGYVGNRAATFPLQLLGFDVDFVNTVQLSNHTGYPVIKGHRLDLNELITLMDGLRANNLLSDYTYV 81 (296)
T ss_pred CCCCeEEEEcceeecccccchhHHHHHHHcCCcceeeccEecCCCCCCCCccCeeCCHHHHHHHHHHHHhcCCcccCCEE
Confidence 4689999999999999999999888999999999999988666888876667899999999999999976421 136799
Q ss_pred EEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCC
Q 027620 91 LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGS 170 (221)
Q Consensus 91 ~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s 170 (221)
++||+|+....+.+.++++.++++.|++++++||++.+.|.+|..++..+.+++ +++++|+++||+.|++.|+|.++.+
T Consensus 82 ~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~-ll~~~dii~pN~~E~~~L~g~~~~~ 160 (296)
T PTZ00344 82 LTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYRE-LIPYADVITPNQFEASLLSGVEVKD 160 (296)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHHH-HhhhCCEEeCCHHHHHHHhCCCCCC
Confidence 999999877788888888877766344689999999887777777888888885 9999999999999999999988777
Q ss_pred HHHHHHHHHHHHHcCCCeEEEeeeee
Q 027620 171 EADGREACKILHAAGPAKVVITSINI 196 (221)
Q Consensus 171 ~~~~~~a~~~L~~~G~~~VvVT~G~~ 196 (221)
.+++.++++++.++|++.|+||.|+.
T Consensus 161 ~~~~~~~~~~l~~~g~~~VvVTg~~~ 186 (296)
T PTZ00344 161 LSDALEAIDWFHEQGIPVVVITSFRE 186 (296)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeecC
Confidence 88888999999999999999997764
No 8
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.93 E-value=1.8e-24 Score=185.14 Aligned_cols=184 Identities=47% Similarity=0.791 Sum_probs=160.2
Q ss_pred CCeEEEEeccCccCccchhhcHHHHHhcCCceeeeeeEEeecCCCCCccceeeCCHHHHHHHHHHHHhcCcc-cccEEEE
Q 027620 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLL-YYTHLLT 92 (221)
Q Consensus 14 ~~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v~~~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l-~~~~v~~ 92 (221)
||+||+|+++...|++|+...+..|+.+|+++..++|+..+|+++|..+.|..++.++++.+++.++....+ .++++++
T Consensus 1 ~~~vl~i~~~~~~g~~~~~~~~~~l~~~g~~~~~~pT~~~s~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~ 80 (286)
T TIGR00687 1 MKNVLSIQSHVVYGHVGNRAATFPLQRLGFEVWAVNTVQFSNHTGYGKWTGQVLPPDELTELVDGLAAINKLNQCDAVLS 80 (286)
T ss_pred CCeEEEEcCceecccccCchHHHHHHHcCCcceeeCcEEcCCCCCCCCCcCeECCHHHHHHHHHHHHhcCccccCCEEEE
Confidence 689999999999999999999999999999999999997789999887889999999999999988654332 4788999
Q ss_pred eecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCC-CCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCCH
Q 027620 93 GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEG-KLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSE 171 (221)
Q Consensus 93 G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g-~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s~ 171 (221)
||+|+..+.+.+.++++.+++..|++.+++||++++.+ ..+.+++..+.+++.+++++|+++||..|++.|+|.++.+.
T Consensus 81 G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~~~~ll~~adii~pN~~Ea~~L~g~~~~~~ 160 (286)
T TIGR00687 81 GYLGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVYREKAIPVADIITPNQFELELLTGRKINTV 160 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHHHHhccccccEecCCHHHHHHHhCCCcCCH
Confidence 99999999999999999998774557899999998653 24456777788876699999999999999999999988888
Q ss_pred HHHHHHHHHHHHcCCCeEEEe-eeeeCC
Q 027620 172 ADGREACKILHAAGPAKVVIT-SINIDG 198 (221)
Q Consensus 172 ~~~~~a~~~L~~~G~~~VvVT-~G~~~~ 198 (221)
+++.++++.|+++|++.|+|| .|. +|
T Consensus 161 ~~~~~~~~~l~~~g~~~Viit~~g~-~g 187 (286)
T TIGR00687 161 EEALAAADALIAMGPDIVLVTHLAR-AG 187 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeccc-cC
Confidence 889999999999999999999 565 44
No 9
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=99.93 E-value=2.1e-25 Score=193.77 Aligned_cols=207 Identities=24% Similarity=0.294 Sum_probs=172.7
Q ss_pred CCCeeeccCCCCCCeEEEEeccCccCccchhhcHHHHHhcC-CceeeeeeEEeecCCCCCccc--eeeCCHHHHHHHHHH
Q 027620 2 APPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLG-YDVDPIHSVQFSNHTGYPTFK--GQVLNGQQLCDLIEG 78 (221)
Q Consensus 2 ~~~~~~~~~~~~~~~vl~i~~~~~~G~vG~d~~~~~l~~~g-i~~~~v~~~~~~~~~~~~~~~--G~~l~~~~i~~~l~~ 78 (221)
-||.+|++.+-..|.+|+|.|+|+.|..|..++++++.++| +.++.++..+.+|+.|+..+. -+.+-.++++.++.+
T Consensus 11 ~~~~~t~~~~~~lPt~LTIAGSDcSGGAGIqADlKv~TAh~vYgMS~iTaltaQn~~gV~sv~~lpp~~V~qqidacL~D 90 (523)
T KOG2598|consen 11 PPPMLTTASNRKLPTVLTIAGSDCSGGAGIQADLKVMTAHGVYGMSVITALTAQNTVGVYSVHLLPPSFVSQQIDACLSD 90 (523)
T ss_pred CCchhhhhhhccCCeeEEEecCCCCCcccchhhhhhhhhhccchhhhhhhhhccCCccceeeccCCHHHHHHHHHHHhhc
Confidence 47899999999999999999999999999999999999999 588888877888988876542 122234566666665
Q ss_pred HHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEccccc-CCCCCCCchhHHHHHHHhcCCCceEEecCH
Q 027620 79 LEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQ 157 (221)
Q Consensus 79 i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~-~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~ 157 (221)
+ +|++|++||||++.....+.+.+++.+. ..+|+||++. .+|..+..++....++++++|.+|+++||.
T Consensus 91 i------~C~VvKTGML~~~~I~~vi~q~l~~~~~----~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI 160 (523)
T KOG2598|consen 91 I------KCDVVKTGMLPSPEIVKVIEQSLQKFNI----PKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNI 160 (523)
T ss_pred C------cccEEeecCcCchHHHHHHHHHHHhhcC----cceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCCh
Confidence 5 4888999999998888888888887432 3699999986 678777778899999999999999999999
Q ss_pred HHHHHhcC------CCCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCc-------------EEEEEeeccCCCcceeecC
Q 027620 158 FEAEQLTG------FRIGSEADGREACKILHAAGPAKVVITSINIDGN-------------LFLIGSHQKEKVGPLCVKG 218 (221)
Q Consensus 158 ~Ea~~l~g------~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~-------------~~~~~~~~~~~~~~~~~~~ 218 (221)
.||..|.+ .++.+..+++..+..+.++|+++|+|++|+..-. .+.++| ...+|..|+|
T Consensus 161 ~Ea~~Ll~~~~~~~~~i~~v~di~~~~~~ihk~gpk~VlvkGghiP~~~~~~~s~d~~~~~~~Dvly---dG~~F~~f~~ 237 (523)
T KOG2598|consen 161 PEAFILLKKEKREISKIQSVFDIAKDAAKIHKLGPKNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLY---DGKEFYIFKS 237 (523)
T ss_pred HHHHHHHhhcccCCcccccHHHHHHHHHHHHhcCcceEEEeCCCcCccccccccCcccCCceEEEEE---ecceEEEecc
Confidence 99999998 3467889999999999999999999999997622 355566 4488999999
Q ss_pred CCC
Q 027620 219 LWF 221 (221)
Q Consensus 219 ~~~ 221 (221)
.|+
T Consensus 238 ~~~ 240 (523)
T KOG2598|consen 238 PYL 240 (523)
T ss_pred ccc
Confidence 985
No 10
>PRK07105 pyridoxamine kinase; Validated
Probab=99.92 E-value=1e-23 Score=180.31 Aligned_cols=188 Identities=26% Similarity=0.381 Sum_probs=154.0
Q ss_pred CCCeEEEEeccCccCccchhhcHHHHHhcCCceeeeeeE-EeecCCCCCccceeeCCHHHHHHHHHHHHhcCcccccEEE
Q 027620 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSV-QFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (221)
Q Consensus 13 ~~~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v~~~-~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~~v~ 91 (221)
.|++||++++.++.|.+|..++++.++.+|+++..+.|. +.+++.++..+.+..+ .++++.+++.++..+. .+++|+
T Consensus 3 ~~~~vl~~~d~~~~G~aG~~adi~~~~~~g~~~~~v~T~~~~q~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~aik 80 (284)
T PRK07105 3 PVKRVAAIHDLSGFGRVALTASIPIMSSMGLQVCPLPTALLSSHTGGFQNPSIIDL-TDGMQAFLTHWKSLNL-KFDAIY 80 (284)
T ss_pred CCCeEEEEecccccceehHhhHHHHHHHcCCcceeccceEeccCCCCCCCCeEeec-HHHHHHHHHHHHHcCC-ccCEEE
Confidence 588999999999999999999999999999999999887 4444445765545555 5788998888877765 789999
Q ss_pred EeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCC--CchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCC
Q 027620 92 TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLY--VPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIG 169 (221)
Q Consensus 92 ~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~--~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~ 169 (221)
+||+++....+.+.++++.+++. +.++++||++++.+.+| .+++..+.+++ +++++|+++||+.|++.|+|.++.
T Consensus 81 ~G~l~~~~~~~~v~~~~~~~~~~--~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~-ll~~advitpN~~Ea~~L~g~~~~ 157 (284)
T PRK07105 81 SGYLGSPRQIQIVSDFIKYFKKK--DLLVVVDPVMGDNGKLYQGFDQEMVEEMRK-LIQKADVITPNLTEACLLLDKPYL 157 (284)
T ss_pred ECcCCCHHHHHHHHHHHHHhccC--CCeEEECCccccCCcCCCCCCHHHHHHHHH-HHhhCCEecCCHHHHHHHcCCCcC
Confidence 99999988888888888877765 78999999987655544 35677788886 999999999999999999998754
Q ss_pred ----CHHHHHHHHHHHHHcCCCeEEEeeeeeC-CcEEEEEe
Q 027620 170 ----SEADGREACKILHAAGPAKVVITSINID-GNLFLIGS 205 (221)
Q Consensus 170 ----s~~~~~~a~~~L~~~G~~~VvVT~G~~~-~~~~~~~~ 205 (221)
+.+++.+++++|.++|++.|+||+|+.+ |.....+|
T Consensus 158 ~~~~~~~~~~~~a~~l~~~g~~~Vvvt~~~~~~g~~g~~~~ 198 (284)
T PRK07105 158 EKSYSEEEIKQLLRKLADLGPKIVIITSVPFEDGKIGVAYY 198 (284)
T ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEEcCeeeCCCeEEEEEE
Confidence 4778889999999999999999998865 33333344
No 11
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.92 E-value=2.3e-23 Score=175.15 Aligned_cols=180 Identities=57% Similarity=0.970 Sum_probs=151.7
Q ss_pred eEEEEeccCccCccchhhcHHHHHhcCCceeeeeeEEeecCCCCCccceeeCCHHHHHHHHHHHHhcC-cccccEEEEee
Q 027620 16 RVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANN-LLYYTHLLTGY 94 (221)
Q Consensus 16 ~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v~~~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~-~l~~~~v~~G~ 94 (221)
+||+|.|.|+.|.+|..++++.+..+|+++..++|.....+++.....|..+++++++++++.+.... ...++++++||
T Consensus 1 ~vl~i~~~~~~g~ag~~ad~~~~~~~g~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~ 80 (254)
T cd01173 1 RVLSIQSHVVHGYVGNSAAVFPLQRLGWDVDALPTVQFSNHTGYGTWTGFVLSAEELEDLLEGLEALGLLLEYDAVLTGY 80 (254)
T ss_pred CEEEEecceecceECCeeHHHHHHHcCCccceeCceecCCCCCCCCCCCeecCHHHHHHHHHHHHHcCCcccCCEEEEec
Confidence 58999999999999999999999999999999988743344443323577889999999999887653 12578899999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCC-CchhHHHHHHHhcCC-CceEEecCHHHHHHhcCCCCCCHH
Q 027620 95 IGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLY-VPSELVSVYREKVVP-VASMLTPNQFEAEQLTGFRIGSEA 172 (221)
Q Consensus 95 l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~-~~~~~~~~l~~~ll~-~~dvi~pN~~Ea~~l~g~~~~s~~ 172 (221)
+++....+.+.++++.++++.|+.+|++||++++.+.+| .+++..+.+++ ++. ++|+++||.+|++.|+|.+..+.+
T Consensus 81 l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~-~l~~~~dvi~pN~~Ea~~l~g~~~~~~~ 159 (254)
T cd01173 81 LGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRD-LLVPLADIITPNQFELELLTGKKINDLE 159 (254)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHH-HHHhcCCEECCcHHHHHHHcCCCcCCHH
Confidence 999999999999999988644578999999987655555 46777888887 555 999999999999999999888888
Q ss_pred HHHHHHHHHHHcCCCeEEEeeeee
Q 027620 173 DGREACKILHAAGPAKVVITSINI 196 (221)
Q Consensus 173 ~~~~a~~~L~~~G~~~VvVT~G~~ 196 (221)
++.+++++|.++|++.|+||+|+.
T Consensus 160 ~~~~~~~~l~~~g~~~Vvit~g~~ 183 (254)
T cd01173 160 DAKAAARALHAKGPKTVVVTSVEL 183 (254)
T ss_pred HHHHHHHHHHHhCCCEEEEEeecc
Confidence 999999999999999999999985
No 12
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.91 E-value=1.1e-22 Score=171.37 Aligned_cols=173 Identities=25% Similarity=0.353 Sum_probs=139.8
Q ss_pred EEEEeccCccCccchhhcHHHHHhcCCceeeeee-EEeecCCCCCccceeeCCHHHHHHHHHHHHhcCcccccEEEEeec
Q 027620 17 VLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHS-VQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYI 95 (221)
Q Consensus 17 vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v~~-~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l 95 (221)
||+|.|+|+.|..|..++++.++++|+....+.| .+.||+.++..+ .+++++.++++++.+.... .++++++||+
T Consensus 1 vl~iag~D~sggaGi~aD~~t~~~~g~~~~~v~T~~t~q~~~~v~~~--~~~~~~~~~~q~~~~~~d~--~~~aikiG~l 76 (254)
T TIGR00097 1 ALTIAGSDSGGGAGIQADLKTFSALGVFGTSVITALTAQNTRGVTGV--YPIPPDFVEAQLDAVFSDI--PVDAAKTGML 76 (254)
T ss_pred CEEEeeeCCCcHHHHHHHHHHHHHcCCeecceeEEEEeEcCcceEEE--EECCHHHHHHHHHHHHhCC--CCCEEEECCc
Confidence 6899999999999999999999999987665544 478888876544 4677788888877765432 5789999999
Q ss_pred CChhHHHHHHHHHHHHHhcCCCC-eEEEccccc-CCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCCHHH
Q 027620 96 GSVSFLNTILQVVEKLRSINPNL-IYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEAD 173 (221)
Q Consensus 96 ~~~~~~~~i~~~i~~ak~~~~~~-~vvlDp~~~-~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s~~~ 173 (221)
++. +.+..+++.++++ +. ++++||+++ ..|..+.+++..+.+++.+++++|+++||..|++.|+|.++.+.++
T Consensus 77 ~~~---~~~~~i~~~~~~~--~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~~~~~ 151 (254)
T TIGR00097 77 ASA---EIVEAVARKLREY--PVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLPLATLITPNLPEAEALLGTKIRTEQD 151 (254)
T ss_pred CCH---HHHHHHHHHHHhc--CCCcEEECCccccCCCCcCCCHHHHHHHHHhccccccEecCCHHHHHHHhCCCCCCHHH
Confidence 874 4455556666666 66 699999986 4565566666666676568999999999999999999988888888
Q ss_pred HHHHHHHHHHcCCCeEEEeeeeeCC
Q 027620 174 GREACKILHAAGPAKVVITSINIDG 198 (221)
Q Consensus 174 ~~~a~~~L~~~G~~~VvVT~G~~~~ 198 (221)
+.++++.|.++|++.|+||+|+..+
T Consensus 152 ~~~~a~~l~~~g~~~Vvvt~G~~~~ 176 (254)
T TIGR00097 152 MIKAAKKLRELGPKAVLIKGGHLEG 176 (254)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 9999999999999999999998554
No 13
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.91 E-value=2.9e-22 Score=170.13 Aligned_cols=173 Identities=28% Similarity=0.306 Sum_probs=135.0
Q ss_pred CeEEEEeccCccCccchhhcHHHHHhcCCceeeeeeE-EeecCCC--CCccceeeCCHHHHHHHHHHHHhcCcccccEEE
Q 027620 15 GRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSV-QFSNHTG--YPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (221)
Q Consensus 15 ~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v~~~-~~~~~~~--~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~~v~ 91 (221)
|.||+|.|+|+.|..|..++++.++++|++...+.+. +.+++.+ +..+ .+++++.++++++.+-.. +.+++++
T Consensus 2 ~~vl~iag~D~sggaGi~aD~~t~~~lg~~~~~v~Ta~t~q~~~~~~~~~v--~~~~~~~i~~q~~~l~~d--~~~~~ik 77 (268)
T PRK12412 2 NKALTIAGSDTSGGAGIQADLKTFQELGVYGMTSLTTIVTMDPHNGWAHNV--FPIPASTLKPQLETTIEG--VGVDALK 77 (268)
T ss_pred CeEEEEEeeCCCchHHHHHHHHHHHHcCCeeceeeeEEEeEcCCCCcEEEE--EeCCHHHHHHHHHHHHhC--CCCCEEE
Confidence 6899999999999999999999999999988767655 6666654 2222 345667777776655432 1478999
Q ss_pred EeecCChhHHHHHHHHHHHHHhcCCCCe-EEEcccccC-CCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCC
Q 027620 92 TGYIGSVSFLNTILQVVEKLRSINPNLI-YVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIG 169 (221)
Q Consensus 92 ~G~l~~~~~~~~i~~~i~~ak~~~~~~~-vvlDp~~~~-~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~ 169 (221)
+||+++....+. +.+.+++. +.+ +++||++.+ .|..+..++..+.+++.+++++|+++||+.|++.|+|.++.
T Consensus 78 iG~l~~~~~v~~---i~~~~~~~--~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~~~~ 152 (268)
T PRK12412 78 TGMLGSVEIIEM---VAETIEKH--NFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQLSGVKIN 152 (268)
T ss_pred ECCCCCHHHHHH---HHHHHHhc--CCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHHhCcCCC
Confidence 999987554444 45555554 444 999999874 34344555666777766999999999999999999999888
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEeeeee
Q 027620 170 SEADGREACKILHAAGPAKVVITSINI 196 (221)
Q Consensus 170 s~~~~~~a~~~L~~~G~~~VvVT~G~~ 196 (221)
+.+++.+++++|+++|++.|+||+|+.
T Consensus 153 ~~~~~~~aa~~l~~~g~~~ViIt~G~~ 179 (268)
T PRK12412 153 SLEDMKEAAKKIHALGAKYVLIKGGSK 179 (268)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 888999999999999999999999993
No 14
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.90 E-value=2.6e-22 Score=170.69 Aligned_cols=178 Identities=21% Similarity=0.228 Sum_probs=138.5
Q ss_pred CCCeEEEEeccCccCccchhhcHHHHHhcCCceeee-eeEEeecCCCCCccceeeCCHHHHHHHHHHHHhcCcccccEEE
Q 027620 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPI-HSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (221)
Q Consensus 13 ~~~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v-~~~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~~v~ 91 (221)
.||+||+|.|+|+.|..|..+++++++++|+....+ +..+.+|+.++....-..++++.++++++.+-.. +.+++++
T Consensus 2 ~~~~vl~iaG~D~sggaGi~aD~~t~~~~g~~~~~~~T~~t~q~~~~~~~~~v~~~~~~~i~~ql~~l~~d--~~~~aik 79 (270)
T PRK12616 2 SMHKALTIAGSDSSGGAGIQADLKTFQEKNVYGMTALTVVVAMDPENSWDHQVFPIDTDTIRAQLSTIVDG--IGVDAMK 79 (270)
T ss_pred CCCeEEEEEeeCCCchHHHHHHHHHHHHcCCcccceeeEEeeEeCCCcceeEEEECCHHHHHHHHHHHHcC--CCCCEEE
Confidence 467999999999999999999999999999765444 4457777776321111356777777777766543 2588999
Q ss_pred EeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccC-CCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCC-CCC
Q 027620 92 TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF-RIG 169 (221)
Q Consensus 92 ~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~-~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~-~~~ 169 (221)
+||+++....+.+.+.++ +. ...++++||++.. .|..++.++..+.+++.+++.+|+++||..|++.|+|. ++.
T Consensus 80 iG~l~s~~~i~~i~~~l~---~~-~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L~g~~~~~ 155 (270)
T PRK12616 80 TGMLPTVDIIELAADTIK---EK-QLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQLSGMGEIK 155 (270)
T ss_pred ECCCCCHHHHHHHHHHHH---hc-CCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHHcCCCCCC
Confidence 999998766666655554 33 1246999999874 34344456777888877899999999999999999997 577
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEeeeee
Q 027620 170 SEADGREACKILHAAGPAKVVITSINI 196 (221)
Q Consensus 170 s~~~~~~a~~~L~~~G~~~VvVT~G~~ 196 (221)
+.+++.+++++|.++|++.|+||+|+.
T Consensus 156 ~~~~~~~aa~~l~~~G~~~VvVt~G~~ 182 (270)
T PRK12616 156 TVEQMKEAAKKIHELGAQYVVITGGGK 182 (270)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 888999999999999999999999984
No 15
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=99.90 E-value=1.6e-22 Score=174.63 Aligned_cols=180 Identities=18% Similarity=0.288 Sum_probs=143.4
Q ss_pred CCCeEEEEeccCccCccchhhcHHHHHhcCCcee-eeeeEEeecCCCCCccceeeCCHHHHHHHHHHHHhcCcccccEEE
Q 027620 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVD-PIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (221)
Q Consensus 13 ~~~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~-~v~~~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~~v~ 91 (221)
.+|+||+|.|+|+.|..|..++++.+.++|+... .++..+.||+.++..+ ..++++.++++++.+... +.+++++
T Consensus 3 ~~p~VLtIAGsDpsGGAGiqADlkt~~alGv~g~sviTalTaQnt~~V~~v--~~v~~~~i~~Ql~all~D--~~i~aIK 78 (321)
T PTZ00493 3 GVSNILSIAGSDSCGGAGMQADIKTAMGLGCHCCTALVVLTAQNTKEVKRI--VEIEEKFIVEQLDSIFAD--VTIDVVK 78 (321)
T ss_pred CCCEEEEEeeeCCCCchHHHHHHHHHHHcCCccceEEEEEEEEcCCceEEE--EECCHHHHHHHHHHHHhC--CCCCEEE
Confidence 5789999999999999999999999999997554 4455588898886544 467777888877766543 2578999
Q ss_pred EeecCChhHHHHHHHHHHHHHhcCC-CCeEEEccccc-CCCCCCCc-hhHHHHHHHhcCCCceEEecCHHHHHHhcC---
Q 027620 92 TGYIGSVSFLNTILQVVEKLRSINP-NLIYVCDPVMG-DEGKLYVP-SELVSVYREKVVPVASMLTPNQFEAEQLTG--- 165 (221)
Q Consensus 92 ~G~l~~~~~~~~i~~~i~~ak~~~~-~~~vvlDp~~~-~~g~~~~~-~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g--- 165 (221)
+||+++....+.+.+.++....+++ ..+||+||++. .+|..+.+ ++..+.+++.|++++++++||..||+.|+|
T Consensus 79 iGmL~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~Ea~~L~g~~~ 158 (321)
T PTZ00493 79 LGVLYSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFYECKVILEALD 158 (321)
T ss_pred ECCcCCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHHHHHHHhCCCc
Confidence 9999998888888877765421101 22599999986 56766666 477788877799999999999999999998
Q ss_pred --CCCCCHHHHHHHHHHHHH-cCCCeEEEeeeeeC
Q 027620 166 --FRIGSEADGREACKILHA-AGPAKVVITSINID 197 (221)
Q Consensus 166 --~~~~s~~~~~~a~~~L~~-~G~~~VvVT~G~~~ 197 (221)
.++ +.+++.+++++|.+ +|+++|+||+|+.+
T Consensus 159 ~~~~~-~~~~~~~aA~~l~~~~G~~~VliKGGh~~ 192 (321)
T PTZ00493 159 CQMDL-SKANMTELCKLVTEKLNINACLFKSCNVG 192 (321)
T ss_pred ccCCC-CHHHHHHHHHHHHHhcCCCEEEECcCCCc
Confidence 332 46789999999986 69999999999975
No 16
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=99.90 E-value=2e-22 Score=169.24 Aligned_cols=173 Identities=31% Similarity=0.454 Sum_probs=132.0
Q ss_pred CccCccchhhcHHHHHhcCCceeeeeeE-EeecCCCCCccceeeCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHH
Q 027620 24 TVQGYVGNKSAVFPLQLLGYDVDPIHSV-QFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLN 102 (221)
Q Consensus 24 ~~~G~vG~d~~~~~l~~~gi~~~~v~~~-~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~ 102 (221)
|+.|..|..++++.++++|+....+.|. +.+++.++..+ ..++.+.+.++++.+.+. +.++++++||+++....+
T Consensus 1 DpsggaGi~aDi~t~~a~G~~~~~v~Talt~qn~~~~~~~--~~~~~~~~~~ql~~~~~~--~~~~aikiG~l~~~~~v~ 76 (246)
T PF08543_consen 1 DPSGGAGIQADIKTISALGVHGCPVPTALTSQNTYGVFDI--EPVDSEMIKAQLDALLED--MKFDAIKIGYLGSAEQVE 76 (246)
T ss_dssp ETTSSSHHHHHHHHHHHTTEEEEEEEEEEEEEETTEEEEE--EE--HHHHHHHHHHHHHT--SC-SEEEE-S-SSHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCccceEeEEEEecCCcceEEE--EECCHHHHHHHHHHhccc--ccccEEEEcccCCchhhh
Confidence 6789999999999999999999888776 55676565433 467778888888888653 268999999999988888
Q ss_pred HHHHHHHHHHhcCCCCeEEEccccc-CCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCCHHHHHHHHHHH
Q 027620 103 TILQVVEKLRSINPNLIYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKIL 181 (221)
Q Consensus 103 ~i~~~i~~ak~~~~~~~vvlDp~~~-~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s~~~~~~a~~~L 181 (221)
.+.++++. . +.++|+||++. +.|..+.+++..+.++++|++.+|+++||..|++.|+|.++.+.+++.+++++|
T Consensus 77 ~i~~~l~~---~--~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~g~~i~~~~~~~~~~~~l 151 (246)
T PF08543_consen 77 IIADFLKK---P--KIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLTGREINSEEDIEEAAKAL 151 (246)
T ss_dssp HHHHHHHH---T--TTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHHTS--SSHHHHHHHHHHH
T ss_pred hHHHHHhc---c--CCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHhCCCCCChHhHHHHHHHH
Confidence 77777643 3 66999999998 455566789999999988999999999999999999999999999999999999
Q ss_pred HHcCCCeEEEeeeeeC--CcE-EEEEe
Q 027620 182 HAAGPAKVVITSINID--GNL-FLIGS 205 (221)
Q Consensus 182 ~~~G~~~VvVT~G~~~--~~~-~~~~~ 205 (221)
+++|++.|+||.++.+ ... ..+.|
T Consensus 152 ~~~G~~~VvItg~~~~~~~~~~~~~l~ 178 (246)
T PF08543_consen 152 LALGPKNVVITGGHLDGDEGIITDVLY 178 (246)
T ss_dssp HHTS-SEEEEEEEEGGSSCEEEEEEEE
T ss_pred HHhCCceEEEeeeccccccccccceee
Confidence 9999999999999973 223 35555
No 17
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.90 E-value=6.9e-22 Score=167.36 Aligned_cols=179 Identities=26% Similarity=0.352 Sum_probs=139.0
Q ss_pred CCCeEEEEeccCccCccchhhcHHHHHhcCCceeeeeeE-EeecCCCCCccceeeCCHHHHHHHHHHHHhcCcccccEEE
Q 027620 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSV-QFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (221)
Q Consensus 13 ~~~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v~~~-~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~~v~ 91 (221)
.+|.||+|+|+|++|.+|..++++.++.+|+....+.|. +.+++.++.. ...++++.+.++++.+.... .+++++
T Consensus 3 ~~~~vl~i~g~d~~ggaG~~adi~~~~~~g~~~~~v~Ta~~~q~~~~~~~--~~~~~~~~~~~q~~~~~~~~--~~~ai~ 78 (266)
T PRK06427 3 KRPIALTIAGSDSGGGAGIQADLKTFQALGVYGMSAITALTAQNTLGVQR--VHPIPPEFVAAQLDAVFSDI--RIDAVK 78 (266)
T ss_pred CCCEEEEEeecCCCCcHHHHHHHHHHHHcCCEEeeeeeEEEeecCCCeeE--EEeCCHHHHHHHHHHHHhcC--CCCEEE
Confidence 467899999999999999999999999999999988876 4456656532 34567777777776654432 588999
Q ss_pred EeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCC-CCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCC
Q 027620 92 TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDE-GKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGS 170 (221)
Q Consensus 92 ~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~-g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s 170 (221)
+||+++... +..+.+.+++. +..++++||++++. +..+++++..+.+++++++++|+++||..|++.|+|.++.+
T Consensus 79 iG~l~~~~~---~~~i~~~~~~~-~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~~ 154 (266)
T PRK06427 79 IGMLASAEI---IETVAEALKRY-PIPPVVLDPVMIAKSGDPLLADDAVAALRERLLPLATLITPNLPEAEALTGLPIAD 154 (266)
T ss_pred ECCcCCHHH---HHHHHHHHHhC-CCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhCcCeEEcCCHHHHHHHhCCCCCC
Confidence 999987544 44455555554 12479999998743 33456667777777668999999999999999999987766
Q ss_pred HHH-HHHHHHHHHHcCCCeEEEeeeee-CCc
Q 027620 171 EAD-GREACKILHAAGPAKVVITSINI-DGN 199 (221)
Q Consensus 171 ~~~-~~~a~~~L~~~G~~~VvVT~G~~-~~~ 199 (221)
.++ +++++++|.++|++.|+||+|+. +|.
T Consensus 155 ~~~~~~~~a~~l~~~g~~~Vvit~g~~~~g~ 185 (266)
T PRK06427 155 TEDEMKAAARALHALGCKAVLIKGGHLLDGE 185 (266)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC
Confidence 555 78899999999999999999984 554
No 18
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.89 E-value=2.2e-21 Score=161.77 Aligned_cols=174 Identities=24% Similarity=0.356 Sum_probs=137.6
Q ss_pred eEEEEeccCccCccchhhcHHHHHhcCCceeeeeeE-EeecCCCCCccceeeCCHHHHHHHHHHHHhcCcccccEEEEee
Q 027620 16 RVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSV-QFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGY 94 (221)
Q Consensus 16 ~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v~~~-~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~ 94 (221)
.||+|.|+|++|..|..++++.++.+|+++..+.+. +.+++.++. ....++++.+.++++.+... +.++++++||
T Consensus 1 ~vl~i~g~d~~ggag~~adi~~~~~~g~~~~~~~T~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~--~~~~~i~~G~ 76 (242)
T cd01169 1 VVLTIAGSDSSGGAGIQADLKTFAALGVYGMSVITALTAQNTLGVF--GVHPVPPEFVAAQLDAVLED--IPVDAIKIGM 76 (242)
T ss_pred CEEEEeeeCCCCHHHHHHHHHHHHHcCCEecceeEEEEeEcCccee--EEEECCHHHHHHHHHHHHhC--CCCCEEEECC
Confidence 479999999999999999999999999999888876 433433332 23467778888887777543 3688999999
Q ss_pred cCChhHHHHHHHHHHHHHhcCCCCeEEEcccccC-CCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCCHHH
Q 027620 95 IGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEAD 173 (221)
Q Consensus 95 l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~-~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s~~~ 173 (221)
+++....+.+.++++ +. |+.++++||++++ .+..+++++..+.+++.+++++|+++||..|++.|+|.+..+.++
T Consensus 77 l~~~~~~~~i~~~~~---~~-~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~~~~~ 152 (242)
T cd01169 77 LGSAEIIEAVAEALK---DY-PDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLTGLEIATEED 152 (242)
T ss_pred CCCHHHHHHHHHHHH---hC-CCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHHhCCCCCCHHH
Confidence 987665555554443 32 4778999999874 333455667777777668899999999999999999988777778
Q ss_pred HHHHHHHHHHcCCCeEEEeeeeeC
Q 027620 174 GREACKILHAAGPAKVVITSINID 197 (221)
Q Consensus 174 ~~~a~~~L~~~G~~~VvVT~G~~~ 197 (221)
..++++.|.++|++.|+||+|+..
T Consensus 153 ~~~~~~~l~~~g~~~Vvit~g~~~ 176 (242)
T cd01169 153 MMKAAKALLALGAKAVLIKGGHLP 176 (242)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCC
Confidence 888899999999999999999853
No 19
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.88 E-value=3.1e-21 Score=177.11 Aligned_cols=177 Identities=25% Similarity=0.407 Sum_probs=140.5
Q ss_pred cCCCCCCeEEEEeccCccCccchhhcHHHHHhcCCce-eeeeeEEeecCCCCCccceeeCCHHHHHHHHHHHHhcCcccc
Q 027620 9 ALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDV-DPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYY 87 (221)
Q Consensus 9 ~~~~~~~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~-~~v~~~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~ 87 (221)
+.+-.+|.||+|+|+|+.|.+|..+++++++++|+.. +.+++.+.+|++++..+ ..++++.+.++++.+.... .+
T Consensus 225 ~~~~~~~~vLtIag~D~sggaGi~aDi~t~~~lg~~~~~~vta~t~qn~~~~~~~--~~~~~~~~~~ql~~l~~d~--~~ 300 (504)
T PTZ00347 225 ENPMKIPTVLTVSGSDSGGGAGHQADLKTLEALGVYSTSALTSLTAQNTKGVQQI--QVVNEDFFAAQIDSVMSDF--NI 300 (504)
T ss_pred cCCCCCCeEEEEeCcCCCChHHHHHHHHHHHHcCCcccchheeEEeEcCcceeeE--EeCCHHHHHHHHHHHHhCC--CC
Confidence 4445578999999999999999999999999999987 56677788999987654 4678888888888775442 47
Q ss_pred cEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEccccc-CCCCCCCc----hhHHHHHHHhcCCCceEEecCHHHHHH
Q 027620 88 THLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG-DEGKLYVP----SELVSVYREKVVPVASMLTPNQFEAEQ 162 (221)
Q Consensus 88 ~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~-~~g~~~~~----~~~~~~l~~~ll~~~dvi~pN~~Ea~~ 162 (221)
+++++||+++....+.+. +.++ +.+|++||+++ .+|..+.. ++..+.+++.+++.+|+++||..|++.
T Consensus 301 ~~Ik~G~l~s~e~i~~i~---~~l~----~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~ 373 (504)
T PTZ00347 301 SVVKLGLVPTARQLEIVI---EKLK----NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIPEAER 373 (504)
T ss_pred CEEEECCcCCHHHHHHHH---HHhc----CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHHHHHH
Confidence 789999999855555444 4443 45799999996 45544443 223455664589999999999999999
Q ss_pred hcCCC-CCCHHHHHHHHHHHHHcCCCeEEEeeeee
Q 027620 163 LTGFR-IGSEADGREACKILHAAGPAKVVITSINI 196 (221)
Q Consensus 163 l~g~~-~~s~~~~~~a~~~L~~~G~~~VvVT~G~~ 196 (221)
|+|.+ +.+.+++.++++.|.++|++.|+||+|+.
T Consensus 374 L~g~~~~~~~~~~~~aa~~l~~~G~~~VvVtgg~~ 408 (504)
T PTZ00347 374 ILGRKEITGVYEARAAAQALAQYGSRYVLVKGGHD 408 (504)
T ss_pred HhCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 99974 66788899999999999999999999994
No 20
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.87 E-value=3.6e-21 Score=174.34 Aligned_cols=175 Identities=23% Similarity=0.313 Sum_probs=138.1
Q ss_pred CCeEEEEeccCccCccchhhcHHHHHhcCCceeeeeeE-EeecCCCCCccc--eeeCCHHHHHHHHHHHHhcCcccccEE
Q 027620 14 TGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSV-QFSNHTGYPTFK--GQVLNGQQLCDLIEGLEANNLLYYTHL 90 (221)
Q Consensus 14 ~~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v~~~-~~~~~~~~~~~~--G~~l~~~~i~~~l~~i~~~~~l~~~~v 90 (221)
+|.||+|.|+|+.|..|..++++++.++|++...+.|. +.||+.+...+. ++.+..++++.+++++ .++++
T Consensus 2 ~~~vltiaG~D~~ggaGi~aDi~t~~alg~~~~~v~Ta~t~Qnt~~~~~i~~~~~~~~~~q~~a~~~d~------~~~~i 75 (448)
T PRK08573 2 IPVALTIAGSDSGGGAGIEADLKTFAALGVHGAVAITSVTAQNTYEVRAIHDLPPEVVAAQIEAVWEDM------GIDAA 75 (448)
T ss_pred CCEEEEEeeeCCCCHHHHHHHHHHHHHcCCeecccceEEEeecCCCceEEEECCHHHHHHHHHHHHhcC------CCCEE
Confidence 47899999999999999999999999999988877665 777776654332 3334344555544433 25678
Q ss_pred EEeecCChhHHHHHHHHHHHHHhcCCCCeEEEccccc-CCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCC
Q 027620 91 LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIG 169 (221)
Q Consensus 91 ~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~-~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~ 169 (221)
++||+++ .+.+..+++.++++ +.++++||+++ ..|..++.++..+.+.+.+++++|+++||..|++.|+|.++.
T Consensus 76 k~G~l~~---~e~~~~i~~~~k~~--g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~ 150 (448)
T PRK08573 76 KTGMLSN---REIIEAVAKTVSKY--GFPLVVDPVMIAKSGAPLLREDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIR 150 (448)
T ss_pred EECCcCC---HHHHHHHHHHHHHc--CCCEEEcCccccCCCCcCCCHHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCC
Confidence 9999875 56677788888887 88999999987 456555666666666545899999999999999999999888
Q ss_pred CHHHHHHHHHHHH-HcCCCeEEEeeeeeCCc
Q 027620 170 SEADGREACKILH-AAGPAKVVITSINIDGN 199 (221)
Q Consensus 170 s~~~~~~a~~~L~-~~G~~~VvVT~G~~~~~ 199 (221)
+.+++.+++++|. ++|++.|+||+|+..|.
T Consensus 151 ~~~d~~~aa~~L~~~~G~~~VvVt~G~~~g~ 181 (448)
T PRK08573 151 SVEDARKAAKYIVEELGAEAVVVKGGHLEGE 181 (448)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEecccCCCC
Confidence 8889999999998 48999999999985543
No 21
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.86 E-value=2.6e-20 Score=171.95 Aligned_cols=178 Identities=21% Similarity=0.263 Sum_probs=142.9
Q ss_pred CCCCCeEEEEeccCccCccchhhcHHHHHhcCCceeeeeeE-EeecCCCCCccceeeCCHHHHHHHHHHHHhcCcccccE
Q 027620 11 PSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSV-QFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTH 89 (221)
Q Consensus 11 ~~~~~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v~~~-~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~~ 89 (221)
+..+|+||+|.|+|+.|..|..++++++.++|+....+.|. +.+++.++..+ ..++++.+.++++.+... +.+++
T Consensus 26 ~~~~~~vl~Iag~D~sGgaGi~aDl~t~~a~g~~~~~v~Talt~q~t~~v~~v--~~~~~~~i~~ql~~l~~d--~~~~a 101 (530)
T PRK14713 26 AAATPRVLSIAGTDPSGGAGIQADLKSIAAAGGYGMAVITALVAQNTRGVRAV--HVPPADFLRAQLDAVSDD--VTVDA 101 (530)
T ss_pred CCCCCeEEEEeCcCCCcHHHHHHHHHHHHHcCCeecchhheEeeecCcceeee--ccCCHHHHHHHHHHHHhC--CCCCE
Confidence 34568899999999999999999999999999988777655 66677675433 345667777777766542 25789
Q ss_pred EEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEccccc-CCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCC
Q 027620 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRI 168 (221)
Q Consensus 90 v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~-~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~ 168 (221)
+++||+++....+.+.++++..+ ..+||+||+++ +.|..+.+++..+.+++ +++++|+++||..|++.|+|.++
T Consensus 102 ikiG~l~s~~~i~~v~~~l~~~~----~~~vVlDPv~~~~~G~~l~~~~~~~~~~~-Ll~~advItPN~~Ea~~Ltg~~~ 176 (530)
T PRK14713 102 VKIGMLGDAEVIDAVRTWLAEHR----PPVVVLDPVMVATSGDRLLEEDAEAALRE-LVPRADLITPNLPELAVLLGEPP 176 (530)
T ss_pred EEECCcCCHHHHHHHHHHHHhCC----CCCEEECCcccCCCCCCCCCHHHHHHHHH-HhhhhheecCChHHHHHHhCCCC
Confidence 99999998888888887776543 33699999996 56665667888888887 99999999999999999999875
Q ss_pred -CCHHHHHHHHHHHHHcCCCeEEEeeeeeC
Q 027620 169 -GSEADGREACKILHAAGPAKVVITSINID 197 (221)
Q Consensus 169 -~s~~~~~~a~~~L~~~G~~~VvVT~G~~~ 197 (221)
.+.+++.+++++|.+.+...|+||+|+..
T Consensus 177 ~~~~~d~~~aa~~L~~~~g~~VvItgG~~~ 206 (530)
T PRK14713 177 ATTWEEALAQARRLAAETGTTVLVKGGHLD 206 (530)
T ss_pred CCCHHHHHHHHHHHHHhcCCEEEEeCCCCC
Confidence 46788888999998766678999999854
No 22
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.85 E-value=1.3e-19 Score=166.45 Aligned_cols=176 Identities=22% Similarity=0.317 Sum_probs=137.8
Q ss_pred CCCeEEEEeccCccCccchhhcHHHHHhcCCceeeeeeE-EeecCCCCCccceeeCCHHHHHHHHHHHHhcCcccccEEE
Q 027620 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSV-QFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (221)
Q Consensus 13 ~~~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v~~~-~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~~v~ 91 (221)
.+|.||+|.|+|++|..|..++++.+.+.|+....+.+. +.+++.++..+ ..++++.++++++.+-.. +.+++++
T Consensus 8 ~~~~vL~IaGsD~~gGAGi~aDl~t~~a~G~~~~~v~Talt~q~t~~v~~~--~~~~~~~~~~ql~~~~~d--~~~~aik 83 (502)
T PLN02898 8 KVPHVLTVAGSDSGAGAGIQADIKACAARGVYCTTAITAVTAQNTVGVQGV--HAVPLDFVAEQLKSVLSD--MPVDVVK 83 (502)
T ss_pred CCCeEEEEeeeCCCcHHHHHHHHHHHHHcCCEecceeeEEEEEcCCcccee--eeCCHHHHHHHHHHHHhC--CCCCEEE
Confidence 357999999999999999999999999999988777655 66677676433 235555555555544322 2578999
Q ss_pred EeecCChhHHHHHHHHHHHHHhcCCCC-eEEEccccc-CCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCC-C
Q 027620 92 TGYIGSVSFLNTILQVVEKLRSINPNL-IYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFR-I 168 (221)
Q Consensus 92 ~G~l~~~~~~~~i~~~i~~ak~~~~~~-~vvlDp~~~-~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~-~ 168 (221)
+||+++. +.+..+++.+++. +. ++++||++. +.|..+.+++..+.+++.+++++|+++||..|++.|+|.. +
T Consensus 84 ~G~l~~~---~~i~~i~~~l~~~--~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea~~L~g~~~~ 158 (502)
T PLN02898 84 TGMLPSA---EIVKVLCQALKEF--PVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEASALLGGDPL 158 (502)
T ss_pred ECCcCCH---HHHHHHHHHHHhC--CCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHHHHHhCCCCC
Confidence 9999874 4444555556554 44 499999985 6777777888888887669999999999999999999853 5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEeeeeeC
Q 027620 169 GSEADGREACKILHAAGPAKVVITSINID 197 (221)
Q Consensus 169 ~s~~~~~~a~~~L~~~G~~~VvVT~G~~~ 197 (221)
.+.+++.+++++|.++|++.|+||+|+..
T Consensus 159 ~~~~~~~~~a~~l~~~G~~~VvItgg~~~ 187 (502)
T PLN02898 159 ETVADMRSAAKELHKLGPRYVLVKGGHLP 187 (502)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 67788999999999999999999999853
No 23
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.84 E-value=1.3e-19 Score=152.34 Aligned_cols=173 Identities=22% Similarity=0.267 Sum_probs=130.4
Q ss_pred CCCeEEEEeccCccCccchhhcHHHHHhcCCceeeeee-EEeecCCCCCccceeeCCHHHHHHHHHHHHhcCcccccEEE
Q 027620 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHS-VQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (221)
Q Consensus 13 ~~~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v~~-~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~~v~ 91 (221)
+.|.||+|.|+|+.|..|..++++.+..+|+....+.+ .+.++..|. .+ .....+.+.++++.+.. .++.+++
T Consensus 2 ~~~~vl~iag~d~~ggaG~~aD~~~~~~~~~~~~~~~t~~t~~~~~G~-~v--~~~~~~~l~~~l~~l~~---~~~~~i~ 75 (253)
T PRK12413 2 KTNYILAISGNDIFSGGGLHADLATYTRNGLHGFVAVTCLTAMTEKGF-EV--FPVDKEIFQQQLDSLKD---VPFSAIK 75 (253)
T ss_pred CCCeEEEEeeeCCCCHHHHHHHHHHHHHcCCccCeeeEEEecccCCce-EE--EECCHHHHHHHHHHhhC---CCCCEEE
Confidence 35789999999999999999999999999986655544 455566663 22 23555677776666532 2466788
Q ss_pred EeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCC-CCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCC
Q 027620 92 TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEG-KLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGS 170 (221)
Q Consensus 92 ~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g-~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s 170 (221)
+|++|+....+.+.++++. . ++.+|++||++++.. .....++..+.+++ +++++|+++||+.|++.|+|.++.+
T Consensus 76 ~G~l~~~~~~~~~~~~~~~--~--~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~-ll~~~dli~pN~~E~~~L~g~~~~~ 150 (253)
T PRK12413 76 IGLLPNVEIAEQALDFIKG--H--PGIPVVLDPVLVCKETHDVEVSELRQELIQ-FFPYVTVITPNLVEAELLSGKEIKT 150 (253)
T ss_pred ECCcCCHHHHHHHHHHHHh--C--CCCCEEEcCceecCCCCccccHHHHHHHHH-HhccCcEECCCHHHHHHHhCcCCCC
Confidence 8999865444544444432 2 388999999987542 11233555666765 8999999999999999999998888
Q ss_pred HHHHHHHHHHHHHcCCCeEEEeeeee
Q 027620 171 EADGREACKILHAAGPAKVVITSINI 196 (221)
Q Consensus 171 ~~~~~~a~~~L~~~G~~~VvVT~G~~ 196 (221)
.+++.+++++|+++|++.|+||+|+.
T Consensus 151 ~~~~~~~a~~l~~~g~~~Vvvt~g~~ 176 (253)
T PRK12413 151 LEDMKEAAKKLYDLGAKAVVIKGGNR 176 (253)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 88999999999999999999999983
No 24
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.83 E-value=2.3e-19 Score=171.54 Aligned_cols=180 Identities=18% Similarity=0.149 Sum_probs=141.0
Q ss_pred cCCCCCCeEEEEeccCccCccchhhcHHHHHhcCCceeee-eeEEeecCCCCCccceeeCCHHHHHHHHHHHHhcCcccc
Q 027620 9 ALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPI-HSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYY 87 (221)
Q Consensus 9 ~~~~~~~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v-~~~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~ 87 (221)
+.++.+|.||+|.|+|++|..|..++++++.++|+....+ +..+.||+.++..+ ..++++.+.++++.+.... .+
T Consensus 236 ~~~~~~~~vLtIaGsD~sggAGi~aDlkt~~alg~~~~~viTaltaQn~~~v~~v--~~~~~~~v~~Ql~~~~~d~--~~ 311 (755)
T PRK09517 236 VNSPSAPRVLSIAGTDPTGGAGIQADLKSIAAGGGYGMCVVTALVAQNTHGVNTI--HTPPLTFLEEQLEAVFSDV--TV 311 (755)
T ss_pred cccCCCCeEEEEeccCCCcHHHHHHHHHHHHHcCCcccchheeEeeEcccceeEE--eeCCHHHHHHHHHHHHcCC--CC
Confidence 3456779999999999999999999999999999865544 55588898886544 4577788878777665432 57
Q ss_pred cEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEccccc-CCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCC
Q 027620 88 THLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG-DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (221)
Q Consensus 88 ~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~-~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~ 166 (221)
+++++||+++....+. +.+.+++. ++.+||+||++. .+|..+.+++..+.+++ +++.+|+++||..|++.|+|.
T Consensus 312 ~aiKiGmL~s~e~v~~---i~~~l~~~-~~~~vVlDPV~~~~sG~~l~~~~~~~~l~~-Llp~adlItPN~~Ea~~L~g~ 386 (755)
T PRK09517 312 DAVKLGMLGSADTVDL---VASWLGSH-EHGPVVLDPVMVATSGDRLLDADATEALRR-LAVHVDVVTPNIPELAVLCGE 386 (755)
T ss_pred CEEEECCCCCHHHHHH---HHHHHHhC-CCCCEEEecccccCCCCCCCCHHHHHHHHH-HhCcccCccCCHHHHHHHhCC
Confidence 8999999987554444 44555542 246799999986 56666677777788886 999999999999999999996
Q ss_pred C-CCCHHHHHHHHHHHHHcCCCeEEEeeeeeC
Q 027620 167 R-IGSEADGREACKILHAAGPAKVVITSINID 197 (221)
Q Consensus 167 ~-~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~ 197 (221)
. +.+.+++.+++++|.+.+...|+||+|+.+
T Consensus 387 ~~~~~~~d~~~aa~~L~~~~g~~VVVkgGh~~ 418 (755)
T PRK09517 387 APAITMDEAIAQARGFARTHGTIVIVKGGHLT 418 (755)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCEEEEcCCcCC
Confidence 3 467788889999998765458999999754
No 25
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=99.80 E-value=1.5e-18 Score=148.24 Aligned_cols=162 Identities=20% Similarity=0.220 Sum_probs=128.9
Q ss_pred ccCccchhh---cHHHHHhcCCceeeeeeE--Eeec-----C-CC-CCcc--ceeeCCHHHHHHHHHHHHhcCccccc-E
Q 027620 25 VQGYVGNKS---AVFPLQLLGYDVDPIHSV--QFSN-----H-TG-YPTF--KGQVLNGQQLCDLIEGLEANNLLYYT-H 89 (221)
Q Consensus 25 ~~G~vG~d~---~~~~l~~~gi~~~~v~~~--~~~~-----~-~~-~~~~--~G~~l~~~~i~~~l~~i~~~~~l~~~-~ 89 (221)
+.|++|.+. +.+.|+.+||...++... +|.| . .+ ...+ .|+.+++++++++++.++..-. ..| +
T Consensus 55 a~GflGg~tg~~~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tein~~Gp~is~~~~~~~l~~~~~~l~-~~d~V 133 (310)
T COG1105 55 ALGFLGGFTGEFFVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEINFPGPEISEAELEQFLEQLKALLE-SDDIV 133 (310)
T ss_pred EEEecCCccHHHHHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEecCCCCCCCHHHHHHHHHHHHHhcc-cCCEE
Confidence 578888666 456799999999888654 3322 1 11 1222 4889999999999999887321 345 6
Q ss_pred EEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCC
Q 027620 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIG 169 (221)
Q Consensus 90 v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~ 169 (221)
|+.|++|+..+.+.+.++++.++++ +++|++|. +|. .+++.+-..+++||||.+|++.++|.+..
T Consensus 134 vlsGSlP~g~~~d~y~~li~~~~~~--g~~vilD~----Sg~---------~L~~~L~~~P~lIKPN~~EL~~~~g~~~~ 198 (310)
T COG1105 134 VLSGSLPPGVPPDAYAELIRILRQQ--GAKVILDT----SGE---------ALLAALEAKPWLIKPNREELEALFGRELT 198 (310)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHhc--CCeEEEEC----ChH---------HHHHHHccCCcEEecCHHHHHHHhCCCCC
Confidence 8999999999999999999999999 99999998 442 22222334699999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEEEE
Q 027620 170 SEADGREACKILHAAGPAKVVITSINIDGNLFLI 203 (221)
Q Consensus 170 s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~~~ 203 (221)
+.+|+.++++.|+..|+++|+|++|+ +|+.|.-
T Consensus 199 ~~~d~i~~a~~l~~~g~~~ViVSlG~-~Gal~~~ 231 (310)
T COG1105 199 TLEDVIKAARELLAEGIENVIVSLGA-DGALLVT 231 (310)
T ss_pred ChHHHHHHHHHHHHCCCCEEEEEecC-cccEEEc
Confidence 99999999999999999999999999 8876654
No 26
>PTZ00292 ribokinase; Provisional
Probab=99.46 E-value=5.6e-13 Score=115.82 Aligned_cols=159 Identities=19% Similarity=0.251 Sum_probs=110.2
Q ss_pred ccCccchhh----cHHHHHhcCCceeeeeeE-EeecCCCCCc------------cce--eeCCHHHHHHHHHHHHh-cCc
Q 027620 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSV-QFSNHTGYPT------------FKG--QVLNGQQLCDLIEGLEA-NNL 84 (221)
Q Consensus 25 ~~G~vG~d~----~~~~l~~~gi~~~~v~~~-~~~~~~~~~~------------~~G--~~l~~~~i~~~l~~i~~-~~~ 84 (221)
.+|.+|+|. ..+.|+++||+++++... ..+|...+.. ..| ..+++++++...+.+.. .+
T Consensus 71 ~is~vG~D~~g~~i~~~l~~~GI~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~- 149 (326)
T PTZ00292 71 MVGMVGTDGFGSDTIKNFKRNGVNTSFVSRTENSSTGLAMIFVDTKTGNNEIVIIPGANNALTPQMVDAQTDNIQNICK- 149 (326)
T ss_pred EEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCcEEEEEEeCCCCceEEEEeCCccccCCHHHHHHHHHHhhhhCC-
Confidence 588889886 556799999999988543 2112111111 112 25677777765555554 33
Q ss_pred ccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhc
Q 027620 85 LYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (221)
Q Consensus 85 l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~ 164 (221)
.++.. ...+.+.+.++++.++++ +.++++||+++.. ... .+.+.+ +++++|+++||+.|++.++
T Consensus 150 ----~~~~~---~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~~---~~~---~~~~~~-~l~~~dii~~n~~E~~~l~ 213 (326)
T PTZ00292 150 ----YLICQ---NEIPLETTLDALKEAKER--GCYTVFNPAPAPK---LAE---VEIIKP-FLKYVSLFCVNEVEAALIT 213 (326)
T ss_pred ----EEEEC---CCCCHHHHHHHHHHHHHc--CCEEEEECCCCcc---ccc---cccHHH-HHhcCCEEcCCHHHHHHHh
Confidence 23332 122356667788888888 8999999976532 011 123444 8889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEE
Q 027620 165 GFRIGSEADGREACKILHAAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 165 g~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~ 201 (221)
|.+..+.+++.++++.+.+.|++.|+||+|+ +|..+
T Consensus 214 g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~-~Ga~~ 249 (326)
T PTZ00292 214 GMEVTDTESAFKASKELQQLGVENVIITLGA-NGCLI 249 (326)
T ss_pred CCCCCChhHHHHHHHHHHHcCCCeEEEEeCC-CcEEE
Confidence 9877777788888899999999999999999 78654
No 27
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=99.46 E-value=6.8e-13 Score=113.07 Aligned_cols=154 Identities=26% Similarity=0.359 Sum_probs=107.6
Q ss_pred ccCccchhh----cHHHHHhcCCceeeeeeEE-eecCC--------C---CCccce--eeCCHHHHHHHHHHHHhcCccc
Q 027620 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQ-FSNHT--------G---YPTFKG--QVLNGQQLCDLIEGLEANNLLY 86 (221)
Q Consensus 25 ~~G~vG~d~----~~~~l~~~gi~~~~v~~~~-~~~~~--------~---~~~~~G--~~l~~~~i~~~l~~i~~~~~l~ 86 (221)
.+|.+|+|. +++.|+++||+++++.... .++.. + +....| ..+++++++...+.++..+++
T Consensus 55 ~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v- 133 (292)
T cd01174 55 MIGAVGDDAFGDELLENLREEGIDVSYVEVVVGAPTGTAVITVDESGENRIVVVPGANGELTPADVDAALELIAAADVL- 133 (292)
T ss_pred EEEEEcCCccHHHHHHHHHHcCCCceEEEEcCCCCceeEEEEEcCCCceEEEEeCCCCCCCCHHHHHHHHHhcccCCEE-
Confidence 578888876 4567999999999885432 11111 1 010112 145667777665556544432
Q ss_pred ccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCC
Q 027620 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (221)
Q Consensus 87 ~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~ 166 (221)
++.|. .+.+.+.+++++++++ +.++++||.+... .. + .+++++|+++||+.|++.|++.
T Consensus 134 ---~~~~~----~~~~~~~~~~~~a~~~--g~~v~~D~~~~~~---~~--------~-~~~~~~dil~~n~~E~~~l~~~ 192 (292)
T cd01174 134 ---LLQLE----IPLETVLAALRAARRA--GVTVILNPAPARP---LP--------A-ELLALVDILVPNETEAALLTGI 192 (292)
T ss_pred ---EEeCC----CCHHHHHHHHHHHHhc--CCEEEEeCCCcCc---Cc--------H-HHHhhCCEEeeCHHHHHHHhCC
Confidence 22232 2356777889999988 8999999964321 01 1 3788999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEE
Q 027620 167 RIGSEADGREACKILHAAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 167 ~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~ 201 (221)
+..+.+++.++++.+.+.|++.|++|+|+ +|..+
T Consensus 193 ~~~~~~~~~~~~~~l~~~g~~~vvvt~G~-~G~~~ 226 (292)
T cd01174 193 EVTDEEDAEKAARLLLAKGVKNVIVTLGA-KGALL 226 (292)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEeCC-CceEE
Confidence 87777788889999999999999999998 77543
No 28
>PRK11142 ribokinase; Provisional
Probab=99.45 E-value=8.6e-13 Score=113.34 Aligned_cols=153 Identities=25% Similarity=0.348 Sum_probs=108.5
Q ss_pred ccCccchhh----cHHHHHhcCCceeeeeeEEeecCCCCC-------------ccce--eeCCHHHHHHHHHHHHhcCcc
Q 027620 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYP-------------TFKG--QVLNGQQLCDLIEGLEANNLL 85 (221)
Q Consensus 25 ~~G~vG~d~----~~~~l~~~gi~~~~v~~~~~~~~~~~~-------------~~~G--~~l~~~~i~~~l~~i~~~~~l 85 (221)
.+|.+|+|. +.+.|+++||+++++..... ..|++. ...| ..+++++++...+.+...++
T Consensus 58 ~~~~vG~D~~g~~i~~~L~~~gV~~~~i~~~~~-~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 135 (306)
T PRK11142 58 FIACVGDDSIGESMRQQLAKDGIDTAPVSVIKG-ESTGVALIFVNDEGENSIGIHAGANAALTPALVEAHRELIANADA- 135 (306)
T ss_pred EEEEECCChhHHHHHHHHHHcCCChhhEEEcCC-CCCCEEEEEECCCCCEEEEEeCCccccCCHHHHHHHHhhhccCCE-
Confidence 588899886 55679999999988765421 112210 0112 25677777765555655443
Q ss_pred cccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcC
Q 027620 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (221)
Q Consensus 86 ~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g 165 (221)
+.+.. ..+.+.+.++++.++++ +.++++||..... +. . .+++++|+++||++|++.++|
T Consensus 136 ----v~~~~---~~~~~~~~~~~~~a~~~--g~~v~~d~~~~~~---~~-~--------~~~~~~dil~~n~~Ea~~l~g 194 (306)
T PRK11142 136 ----LLMQL---ETPLETVLAAAKIAKQH--GTKVILNPAPARE---LP-D--------ELLALVDIITPNETEAEKLTG 194 (306)
T ss_pred ----EEEeC---CCCHHHHHHHHHHHHHc--CCEEEEECCCCcc---cC-H--------HHHhhCCEEcCCHHHHHHHhC
Confidence 33221 22356777888999988 9999999964321 11 1 377899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEE
Q 027620 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 166 ~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~ 201 (221)
.+..+.++..++++.+.++|++.|+||+|+ +|..+
T Consensus 195 ~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~-~G~~~ 229 (306)
T PRK11142 195 IRVEDDDDAAKAAQVLHQKGIETVLITLGS-RGVWL 229 (306)
T ss_pred CCCCChHHHHHHHHHHHHhCCCeEEEEECC-CcEEE
Confidence 877777788888899989999999999999 77643
No 29
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.42 E-value=6.8e-12 Score=108.27 Aligned_cols=158 Identities=19% Similarity=0.208 Sum_probs=107.2
Q ss_pred cCccchhh---cHHHHHhcCCceeeeeeEEeecCC---------C--CCc-cceeeCCHHHHHHHHHHHHhcCccccc-E
Q 027620 26 QGYVGNKS---AVFPLQLLGYDVDPIHSVQFSNHT---------G--YPT-FKGQVLNGQQLCDLIEGLEANNLLYYT-H 89 (221)
Q Consensus 26 ~G~vG~d~---~~~~l~~~gi~~~~v~~~~~~~~~---------~--~~~-~~G~~l~~~~i~~~l~~i~~~~~l~~~-~ 89 (221)
++.+|++. .++.|+++||+++.+..... +++ + +.. ..|..++.++++.+.+.+.... ..+ +
T Consensus 58 i~~vG~~~g~~i~~~l~~~gv~~~~~~~~~~-~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ 134 (309)
T PRK10294 58 IFPAGGATGEHLVSLLADENVPVATVEAKDW-TRQNLHVHVEASGEQYRFVMPGAALNEDEFRQLEEQVLEIE--SGAIL 134 (309)
T ss_pred EEEecCccHHHHHHHHHHcCCCceEEECCCC-CeeeEEEEEcCCCcEEEEECCCCCCCHHHHHHHHHHHHhcC--CCCEE
Confidence 45555422 45679999999888865321 111 1 100 1244567776666544432221 123 4
Q ss_pred EEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCC
Q 027620 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIG 169 (221)
Q Consensus 90 v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~ 169 (221)
++.|+++...+.+.+.++++.++++ ++++++||+. +...+. ..++++|+++||++|++.|++.+..
T Consensus 135 ~i~g~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~---------~~~~~~---~~~~~~~~i~~n~~E~~~l~g~~~~ 200 (309)
T PRK10294 135 VISGSLPPGVKLEKLTQLISAAQKQ--GIRCIIDSSG---------DALSAA---LAIGNIELVKPNQKELSALVNRDLT 200 (309)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHHc--CCeEEEeCCC---------HHHHHH---HhcCCCeEECCCHHHHHHHhCCCCC
Confidence 5668887666678888999999988 9999999941 111111 1246899999999999999998777
Q ss_pred CHHHHHHHHHHHHHcC-CCeEEEeeeeeCCcEE
Q 027620 170 SEADGREACKILHAAG-PAKVVITSINIDGNLF 201 (221)
Q Consensus 170 s~~~~~~a~~~L~~~G-~~~VvVT~G~~~~~~~ 201 (221)
+.++++++++++++.| ++.|+||+|+ +|..+
T Consensus 201 ~~~~~~~a~~~l~~~~~~~~vvvT~G~-~G~~~ 232 (309)
T PRK10294 201 QPDDVRKAAQELVNSGKAKRVVVSLGP-QGALG 232 (309)
T ss_pred CHHHHHHHHHHHHHcCCCCEEEEecCC-CceEE
Confidence 7788889999999877 8999999999 67544
No 30
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=99.41 E-value=6.8e-12 Score=107.57 Aligned_cols=159 Identities=20% Similarity=0.205 Sum_probs=109.5
Q ss_pred ccCccchhh---cHHHHHhcCCceeeeeeEEeecCCCCCcc-----------ceeeCCHHHHHHHHHHHHhcCcccccE-
Q 027620 25 VQGYVGNKS---AVFPLQLLGYDVDPIHSVQFSNHTGYPTF-----------KGQVLNGQQLCDLIEGLEANNLLYYTH- 89 (221)
Q Consensus 25 ~~G~vG~d~---~~~~l~~~gi~~~~v~~~~~~~~~~~~~~-----------~G~~l~~~~i~~~l~~i~~~~~l~~~~- 89 (221)
.+|.+|+|. .++.|+++||+++.+.... .+.+.+... .|..+++++++.+.+.+... .-..+.
T Consensus 54 ~is~vG~D~g~~~~~~L~~~gId~~~~~~~~-~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~v 131 (304)
T TIGR03828 54 ALGFLGGFTGDFIEALLREEGIKTDFVRVPG-ETRINVKIKEPSGTETKLNGPGPEISEEELEALLEKLRAQ-LAEGDWL 131 (304)
T ss_pred EEEEecCchhHHHHHHHHHCCCcceEEECCC-CCeeeEEEEeCCCCEEEEECCCCCCCHHHHHHHHHHHHHh-ccCCCEE
Confidence 467777775 5567999999999886542 122221111 13456766776655443311 002332
Q ss_pred EEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCC
Q 027620 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIG 169 (221)
Q Consensus 90 v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~ 169 (221)
++.|+.+...+.+.+.++++.++++ +.++++||+.. ..++ .+...+|+++||+.|++.++|.+..
T Consensus 132 ~~~g~~~~~~~~~~~~~~~~~~~~~--~~~v~~D~~~~---------~~~~----~~~~~~~i~~~n~~E~~~l~g~~~~ 196 (304)
T TIGR03828 132 VLSGSLPPGVPPDFYAELIALAREK--GAKVILDTSGE---------ALRD----GLKAKPFLIKPNDEELEELFGRELK 196 (304)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHc--CCEEEEECChH---------HHHH----HHhcCCcEECcCHHHHHHHhCCCCC
Confidence 4557766555567788899999888 88999999421 1111 1334689999999999999998777
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEE
Q 027620 170 SEADGREACKILHAAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 170 s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~ 201 (221)
+.+++.++++.|+++|++.|+||+|+ +|..+
T Consensus 197 ~~~~~~~~~~~l~~~g~~~vvvT~G~-~G~~~ 227 (304)
T TIGR03828 197 TLEEIIEAARELLDLGAENVLISLGA-DGALL 227 (304)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEccCC-CCcEE
Confidence 78888899999999999999999998 77644
No 31
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=99.38 E-value=1e-11 Score=107.36 Aligned_cols=159 Identities=19% Similarity=0.189 Sum_probs=107.0
Q ss_pred ccCccchhh---cHHHHHhcCCceeeeeeEEeecCCCCCc-----------cceeeCCHHHHHHHHHHHHhcCcccccE-
Q 027620 25 VQGYVGNKS---AVFPLQLLGYDVDPIHSVQFSNHTGYPT-----------FKGQVLNGQQLCDLIEGLEANNLLYYTH- 89 (221)
Q Consensus 25 ~~G~vG~d~---~~~~l~~~gi~~~~v~~~~~~~~~~~~~-----------~~G~~l~~~~i~~~l~~i~~~~~l~~~~- 89 (221)
.+|.+|+|. .++.|+++||++..+.... .+...+.. ..|..+++.++..+....... .-.++.
T Consensus 58 ~i~~vG~D~~~~~~~~l~~~gv~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~d~v 135 (312)
T PRK09513 58 VGGFLGKDNQDGFQQLFSELGIANRFQVVQG-RTRINVKLTEKDGEVTDFNFSGFEVTPADWERFVTDSLSW-LGQFDMV 135 (312)
T ss_pred EEEEecCccHHHHHHHHHHcCCCccEEECCC-CCEEEEEEEeCCCcEEEEeCCCCCCCHHHHHHHHHHHHhh-cCCCCEE
Confidence 367788777 4456899999876553221 11111110 113346666665543221110 012443
Q ss_pred EEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCC
Q 027620 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIG 169 (221)
Q Consensus 90 v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~ 169 (221)
.+.|+++.+...+.+.++++.++++ +.++++||+.. ..+ +.+...+++++||++|+..++|.+..
T Consensus 136 ~~~g~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~---------~~~----~~~~~~~~~l~~n~~E~~~l~g~~~~ 200 (312)
T PRK09513 136 AVSGSLPRGVSPEAFTDWMTRLRSQ--CPCIIFDSSRE---------ALV----AGLKAAPWLVKPNRRELEIWAGRKLP 200 (312)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHhc--CCEEEEECChH---------HHH----HHhccCCeEEcCCHHHHHHHhCCCCC
Confidence 4778887766678888899999887 88999999521 111 12445789999999999999998777
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEE
Q 027620 170 SEADGREACKILHAAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 170 s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~ 201 (221)
+.+++.++++.+.++|++.|+||+|+ +|..+
T Consensus 201 ~~~~~~~~~~~l~~~g~~~vvvt~G~-~G~~~ 231 (312)
T PRK09513 201 ELKDVIEAAHALREQGIAHVVISLGA-EGALW 231 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCC-CCcEE
Confidence 77888889999999999999999999 77654
No 32
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=99.38 E-value=3.8e-12 Score=108.47 Aligned_cols=163 Identities=20% Similarity=0.240 Sum_probs=104.0
Q ss_pred CccCccchhh----cHHHHHhcCCceeeeeeEE-eecCCCCCc-----------cce----eeCCHHHHHHHHHHHHhcC
Q 027620 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQ-FSNHTGYPT-----------FKG----QVLNGQQLCDLIEGLEANN 83 (221)
Q Consensus 24 ~~~G~vG~d~----~~~~l~~~gi~~~~v~~~~-~~~~~~~~~-----------~~G----~~l~~~~i~~~l~~i~~~~ 83 (221)
..+|.+|+|. ..+.|+++||+++++.... ..+...+.. ..+ ..++.++++ .+.+++.+
T Consensus 49 ~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 126 (294)
T cd01166 49 ALVTAVGDDPFGRFILAELRREGVDTSHVRVDPGRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLD--EAALAGAD 126 (294)
T ss_pred EEEEecCCCHHHHHHHHHHHHcCCCCceEEEeCCCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCC--HHHHhCCC
Confidence 3688899775 5567999999999885442 111111111 111 133333333 23444444
Q ss_pred cccccEEEEeecCChhH--HHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHH
Q 027620 84 LLYYTHLLTGYIGSVSF--LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAE 161 (221)
Q Consensus 84 ~l~~~~v~~G~l~~~~~--~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~ 161 (221)
+ +++.|+.+...+ .+.+.+++++++++ +.++++||.++.. ++..+...+.+++ +++++|+++||+.|++
T Consensus 127 ~----v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~D~~~~~~--~~~~~~~~~~~~~-~~~~~dil~~n~~E~~ 197 (294)
T cd01166 127 H----LHLSGITLALSESAREALLEALEAAKAR--GVTVSFDLNYRPK--LWSAEEAREALEE-LLPYVDIVLPSEEEAE 197 (294)
T ss_pred E----EEEcCcchhhCHHHHHHHHHHHHHHHHc--CCEEEECCCCcch--hcChHHHHHHHHH-HHHhCCEEEcCHHHHH
Confidence 3 235566543333 47888899999887 8899999976432 1112223344554 8999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEE
Q 027620 162 QLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 162 ~l~g~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~ 201 (221)
.+++.+. .+++.+.++++ ++|++.|+||+|+ +|..+
T Consensus 198 ~l~~~~~--~~~~~~~~~~l-~~g~~~viit~G~-~G~~~ 233 (294)
T cd01166 198 ALLGDED--PTDAAERALAL-ALGVKAVVVKLGA-EGALV 233 (294)
T ss_pred HHhCCCC--chhHHHHHHhh-cCCccEEEEEEcC-CceEE
Confidence 9998743 34566666666 7899999999998 66543
No 33
>PLN02967 kinase
Probab=99.37 E-value=2.7e-12 Score=118.83 Aligned_cols=166 Identities=13% Similarity=0.133 Sum_probs=107.7
Q ss_pred ccCccchhh----cHHHHHhcCCceeeeeeEE-eecCCCCCccc--ee------------eCCHHHHHHHHHHHHhcCcc
Q 027620 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQ-FSNHTGYPTFK--GQ------------VLNGQQLCDLIEGLEANNLL 85 (221)
Q Consensus 25 ~~G~vG~d~----~~~~l~~~gi~~~~v~~~~-~~~~~~~~~~~--G~------------~l~~~~i~~~l~~i~~~~~l 85 (221)
.+|.+|+|. .++.|+++||+++++.... ..|...++.+. |. .++.+++.. +.+...+++
T Consensus 262 fIg~VGdD~~G~~ll~~L~~~GVDts~v~~~~~~~Tgla~V~vd~~Gerr~~~~~~gAd~~L~~~di~~--~~l~~A~i~ 339 (581)
T PLN02967 262 FMGKLGDDDYGQAMLYYLNVNKVQTRSVCIDGKRATAVSTMKIAKRGRLKTTCVKPCAEDSLSKSEINI--DVLKEAKMF 339 (581)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCcEEEEEECCCCceEEEEecCChhhhCChhhcCH--hHhcCCCEE
Confidence 588999888 5568999999999886542 22222222211 21 334444432 234444443
Q ss_pred cccEEEEeecC--ChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCc-hhHHHHHHHhcCCCceEEecCHHHHHH
Q 027620 86 YYTHLLTGYIG--SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVP-SELVSVYREKVVPVASMLTPNQFEAEQ 162 (221)
Q Consensus 86 ~~~~v~~G~l~--~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~-~~~~~~l~~~ll~~~dvi~pN~~Ea~~ 162 (221)
..|.++ ++...+++.++++.++++ |++|+|||+++.. +|-+ +...+.+.+ +++++|++++|++|++.
T Consensus 340 -----hfgg~~ll~e~~~~all~alk~Ak~~--Gv~VsFDpNlR~~--lw~~~e~~~e~i~e-lL~~aDILk~NeeEl~~ 409 (581)
T PLN02967 340 -----YFNTHSLLDPTMRSTTLRAIKISKKL--GGVIFYDLNLPLP--LWSSSEETKSFIQE-AWNLADIIEVTKQELEF 409 (581)
T ss_pred -----EEeCchhcccchHHHHHHHHHHHHHC--CCEEEEECCCCcc--cccchHHHHHHHHH-HHHhCCEEEECHHHHHH
Confidence 333332 234467888999999998 9999999997643 2212 334555665 89999999999999999
Q ss_pred hcCCCCCCHH------------HHHHHHHHHHHcCCCeEEEeeeeeCCcEEEE
Q 027620 163 LTGFRIGSEA------------DGREACKILHAAGPAKVVITSINIDGNLFLI 203 (221)
Q Consensus 163 l~g~~~~s~~------------~~~~a~~~L~~~G~~~VvVT~G~~~~~~~~~ 203 (221)
|+|.+..... ...++++.++..|++.|+||+|+ +|..|..
T Consensus 410 LtG~~~~~e~~~~~~~~~~~~~~~~e~a~~l~~~g~k~VVVTlG~-~Ga~~~~ 461 (581)
T PLN02967 410 LCGIEPTEEFDTKDNDKSKFVHYSPEVVAPLWHENLKVLFVTNGT-SKIHYYT 461 (581)
T ss_pred HhCCCccccccccccchhccccchHHHHHHHHhCCCCEEEEEECc-cceEEEE
Confidence 9986321000 01234566777899999999999 8866543
No 34
>PTZ00247 adenosine kinase; Provisional
Probab=99.37 E-value=3e-12 Score=112.26 Aligned_cols=165 Identities=18% Similarity=0.177 Sum_probs=104.1
Q ss_pred CccCccchhh----cHHHHHhcCCceeeeeeEEeecCCCCC----------ccce--eeCCHHHHHHH--HHHHHhcCcc
Q 027620 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYP----------TFKG--QVLNGQQLCDL--IEGLEANNLL 85 (221)
Q Consensus 24 ~~~G~vG~d~----~~~~l~~~gi~~~~v~~~~~~~~~~~~----------~~~G--~~l~~~~i~~~--l~~i~~~~~l 85 (221)
..+|.+|+|. .++.|+++||+++.+.....+|...++ ...| ..+++++++.. .+.++..+++
T Consensus 84 ~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~~~~~~Tg~~~i~v~~~~r~~~~~~ga~~~l~~~~i~~~~~~~~l~~~~~v 163 (345)
T PTZ00247 84 CYVGCVGDDRFAEILKEAAEKDGVEMLFEYTTKAPTGTCAVLVCGKERSLVANLGAANHLSAEHMQSHAVQEAIKTAQLY 163 (345)
T ss_pred EEEEEeccchhHHHHHHHHHHcCCeeeccccCCCCcEEEEEEEcCCCcccccCcchhhcCChHHcCcHHHHHHHhhCCEE
Confidence 3678899887 556799999998876422211211111 1112 25666666542 2345555543
Q ss_pred cccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcC
Q 027620 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (221)
Q Consensus 86 ~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g 165 (221)
++.|+... .+.+.+.++++.+|++ ++++++||... ++.....+.+++ +++++|+++||++|++.|+|
T Consensus 164 ----~~~g~~~~-~~~~~~~~~~~~a~~~--g~~v~~d~~~~-----~~~~~~~~~~~~-~l~~~Dil~~N~~Ea~~l~g 230 (345)
T PTZ00247 164 ----YLEGFFLT-VSPNNVLQVAKHARES--GKLFCLNLSAP-----FISQFFFERLLQ-VLPYVDILFGNEEEAKTFAK 230 (345)
T ss_pred ----EEEEEEec-ccHHHHHHHHHHHHHc--CCEEEEECCcH-----HHHHHHHHHHHH-HHhhCCEEEeCHHHHHHHhh
Confidence 34454322 2457888899999988 99999997421 111222344555 89999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHH------cCCCeEEEeeeeeCCcEEE
Q 027620 166 FRIGSEADGREACKILHA------AGPAKVVITSINIDGNLFL 202 (221)
Q Consensus 166 ~~~~s~~~~~~a~~~L~~------~G~~~VvVT~G~~~~~~~~ 202 (221)
....+.++..++++.+.+ .+++.|+||+|+ +|..+.
T Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvT~G~-~G~~~~ 272 (345)
T PTZ00247 231 AMKWDTEDLKEIAARIAMLPKYSGTRPRLVVFTQGP-EPTLIA 272 (345)
T ss_pred ccCCCccCHHHHHHHHHhccccccCCCCEEEEecCC-CceEEE
Confidence 422222345666666653 257899999999 786543
No 35
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=99.37 E-value=4.4e-12 Score=115.77 Aligned_cols=165 Identities=18% Similarity=0.138 Sum_probs=106.4
Q ss_pred CccCccchhh----cHHHHHhcCCceeeeeeEEe-------ecCCCC--Cccc--ee-----------eCCHHHHH----
Q 027620 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQF-------SNHTGY--PTFK--GQ-----------VLNGQQLC---- 73 (221)
Q Consensus 24 ~~~G~vG~d~----~~~~l~~~gi~~~~v~~~~~-------~~~~~~--~~~~--G~-----------~l~~~~i~---- 73 (221)
..+|.+|+|. +++.|+++||+++++..... ...|++ +.++ |+ ....+.+.
T Consensus 137 ~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~~~~~~~~l~~ 216 (470)
T PLN02341 137 STIGHVGDEIYGKFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEPAFSWISKLSA 216 (470)
T ss_pred EEEEEecCcHHHHHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeeccccccccchhhhhcccH
Confidence 3689999996 55689999999988754321 001211 1111 11 11111111
Q ss_pred HHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCc-hhHHHHHHHhcCCCceE
Q 027620 74 DLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVP-SELVSVYREKVVPVASM 152 (221)
Q Consensus 74 ~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~-~~~~~~l~~~ll~~~dv 152 (221)
...+.++..++ .++.|+.+.+.+.+.+.++++.++++ +.+|++||+++... ++.. ++..+.+.+ +++++|+
T Consensus 217 ~~~~~l~~adi----v~lsg~~~~~~~~~~~~~~~~~Ak~~--g~~V~~Dp~~~~~~-~~~~~~~~~~~l~~-~L~~~Di 288 (470)
T PLN02341 217 EAKMAIRQSKA----LFCNGYVFDELSPSAIASAVDYAIDV--GTAVFFDPGPRGKS-LLVGTPDERRALEH-LLRMSDV 288 (470)
T ss_pred HHHhhhhcCCE----EEEeceeCCcCCHHHHHHHHHHHHHc--CCEEEEeCCCcccc-cccChHHHHHHHHH-HHhhCCE
Confidence 11223444443 24567765555678888999999988 99999999865321 1111 223344555 8899999
Q ss_pred EecCHHHHHHhcCCCCCCHHHHHHHHHHHHHcC--CCeEEEeeeeeCCcEEE
Q 027620 153 LTPNQFEAEQLTGFRIGSEADGREACKILHAAG--PAKVVITSINIDGNLFL 202 (221)
Q Consensus 153 i~pN~~Ea~~l~g~~~~s~~~~~~a~~~L~~~G--~~~VvVT~G~~~~~~~~ 202 (221)
++||++|++.++|.+ +..++++.|++.| ++.|+||+|+ +|..+.
T Consensus 289 l~~Ne~Ea~~l~g~~-----~~~~a~~~l~~~g~~~k~VVVTlG~-~Ga~~~ 334 (470)
T PLN02341 289 LLLTSEEAEALTGIR-----NPILAGQELLRPGIRTKWVVVKMGS-KGSILV 334 (470)
T ss_pred EEecHHHHHHHhCCC-----CHHHHHHHHHhcCCCCCEEEEeeCC-CCeEEE
Confidence 999999999999873 5667788888777 5899999999 786543
No 36
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=99.37 E-value=1.1e-11 Score=106.18 Aligned_cols=156 Identities=24% Similarity=0.250 Sum_probs=103.6
Q ss_pred CccCccchhh----cHHHHHhcCCceeeeeeEEeecCCCCCc---------c-c--eeeCCHHHHHHHHH----HHHhcC
Q 027620 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPT---------F-K--GQVLNGQQLCDLIE----GLEANN 83 (221)
Q Consensus 24 ~~~G~vG~d~----~~~~l~~~gi~~~~v~~~~~~~~~~~~~---------~-~--G~~l~~~~i~~~l~----~i~~~~ 83 (221)
..+|.+|+|. ..+.|+++||+++++....+.+...+.. + . +..++....+++.+ .+++
T Consensus 57 ~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 134 (304)
T cd01172 57 TLLGVVGDDEAGDLLRKLLEKEGIDTDGIVDEGRPTTTKTRVIARNQQLLRVDREDDSPLSAEEEQRLIERIAERLPE-- 134 (304)
T ss_pred EEEEEEcCCccHHHHHHHHHhCCCCcceEecCCCCceEEEEEecCCcEEEEEecCCCCCCCHHHHHHHHHHHHHhhcc--
Confidence 3688899886 4457999999998753222111111000 1 1 22344333322222 2333
Q ss_pred cccccEE-EEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHH
Q 027620 84 LLYYTHL-LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQ 162 (221)
Q Consensus 84 ~l~~~~v-~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~ 162 (221)
.+.+ +.|+.+...+.+.+.++++.++++ +.+|++||.... + .+++++|+++||+.|++.
T Consensus 135 ---~~~v~~s~~~~~~~~~~~~~~~~~~a~~~--~~~v~~D~~~~~----~-----------~~~~~~d~l~~n~~E~~~ 194 (304)
T cd01172 135 ---ADVVILSDYGKGVLTPRVIEALIAAAREL--GIPVLVDPKGRD----Y-----------SKYRGATLLTPNEKEARE 194 (304)
T ss_pred ---CCEEEEEcCCCCccCHHHHHHHHHHHHhc--CCCEEEeCCCcc----h-----------hhccCCcEeCCCHHHHHH
Confidence 3434 346554444557788889999988 899999995321 1 267899999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHH-HcCCCeEEEeeeeeCCcEEE
Q 027620 163 LTGFRIGSEADGREACKILH-AAGPAKVVITSINIDGNLFL 202 (221)
Q Consensus 163 l~g~~~~s~~~~~~a~~~L~-~~G~~~VvVT~G~~~~~~~~ 202 (221)
+++.+..+.+++.++++++. +.|++.|+||+|+ +|..+.
T Consensus 195 l~~~~~~~~~~~~~~~~~l~~~~g~~~vvvt~G~-~G~~~~ 234 (304)
T cd01172 195 ALGDEINDDDELEAAGEKLLELLNLEALLVTLGE-EGMTLF 234 (304)
T ss_pred HhCCCCCChHHHHHHHHHHHHHhCCCeEEEEcCC-CccEEE
Confidence 99987777788888888876 5799999999999 776543
No 37
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=99.35 E-value=4e-12 Score=116.20 Aligned_cols=166 Identities=13% Similarity=0.102 Sum_probs=107.7
Q ss_pred ccCccchhh----cHHHHHhcCCceeeeeeEE-eecCCCCCcc---c-----------e--eeCCHHHHHHHHHHHHhcC
Q 027620 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQ-FSNHTGYPTF---K-----------G--QVLNGQQLCDLIEGLEANN 83 (221)
Q Consensus 25 ~~G~vG~d~----~~~~l~~~gi~~~~v~~~~-~~~~~~~~~~---~-----------G--~~l~~~~i~~~l~~i~~~~ 83 (221)
.+|+||+|. .++.|+++||+++++.... ..|...++.+ . | ..+++++++. +.+...+
T Consensus 191 fIG~VGdD~fG~~l~~~L~~~GVDts~v~~~~~~~Tgla~V~v~~~~~gr~~~~~~~~gA~~~L~~~di~~--~~l~~a~ 268 (496)
T PLN02543 191 FMGKVGDDDFGEELVLMMNKERVQTRAVKFDENAKTACSRMKIKFRDGGKMVAETVKEAAEDSLLASELNL--AVLKEAR 268 (496)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCceEEEEEEeCCCCCEEEEecCCCHHHhCChhhcCH--hHhCCCc
Confidence 589999998 5568999999999887552 1122222211 0 1 1344444432 2345555
Q ss_pred cccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCc-hhHHHHHHHhcCCCceEEecCHHHHHH
Q 027620 84 LLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVP-SELVSVYREKVVPVASMLTPNQFEAEQ 162 (221)
Q Consensus 84 ~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~-~~~~~~l~~~ll~~~dvi~pN~~Ea~~ 162 (221)
++++..+. +-.+...+.+.++++.+|++ |++|+|||+++.. +|-+ ++..+.+.+ +++++|++++|++|++.
T Consensus 269 ilh~~~~~---l~~~~~~~a~~~al~~Ak~~--G~~VsfDpN~R~~--LW~~~~~~~~~i~~-~l~~aDIl~~SeeEa~~ 340 (496)
T PLN02543 269 MFHFNSEV---LTSPSMQSTLFRAIELSKKF--GGLIFFDLNLPLP--LWRSRDETRELIKK-AWNEADIIEVSRQELEF 340 (496)
T ss_pred eEEECChh---hcCchHHHHHHHHHHHHHHC--CCEEEEeCCCCcc--ccCCHHHHHHHHHH-HHHhCCEEEecHHHHHH
Confidence 54433221 11233467888999999998 9999999997743 2322 344555665 89999999999999999
Q ss_pred hcCCCCC------CHH------------------HHHHHHHHHHHcCCCeEEEeeeeeCCcEEE
Q 027620 163 LTGFRIG------SEA------------------DGREACKILHAAGPAKVVITSINIDGNLFL 202 (221)
Q Consensus 163 l~g~~~~------s~~------------------~~~~a~~~L~~~G~~~VvVT~G~~~~~~~~ 202 (221)
|+|.+.. +.+ +.+. +..+.+.|++.|+||+|+ +|..|.
T Consensus 341 Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~g~~~VVVT~G~-~Ga~~~ 402 (496)
T PLN02543 341 LLDEDYYERKRNYPPQYYAESFEQTKNWRDYYHYTPEE-IAPLWHDGLKLLLVTDGT-LRIHYY 402 (496)
T ss_pred HhCCCcccccccccchhhhhhhhhhhcccccccCCHHH-HHHHHHCCCCEEEEEcCC-CcEEEE
Confidence 9986411 111 1222 456777899999999999 887654
No 38
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=99.34 E-value=2.2e-11 Score=104.63 Aligned_cols=159 Identities=19% Similarity=0.202 Sum_probs=107.1
Q ss_pred ccCccchhh---cHHHHHhcCCceeeeeeEEeecCCCCC---------cc--ceeeCCHHHHHHHHHHHHhcCcccccE-
Q 027620 25 VQGYVGNKS---AVFPLQLLGYDVDPIHSVQFSNHTGYP---------TF--KGQVLNGQQLCDLIEGLEANNLLYYTH- 89 (221)
Q Consensus 25 ~~G~vG~d~---~~~~l~~~gi~~~~v~~~~~~~~~~~~---------~~--~G~~l~~~~i~~~l~~i~~~~~l~~~~- 89 (221)
.+|.+|+|. ..+.|++.||++.++.... .+.+.+. .+ .|..+++++++.++..+.+.- -..+.
T Consensus 54 ~i~~vG~D~g~~i~~~l~~~gI~~~~i~~~~-~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v 131 (303)
T TIGR03168 54 ATGFLGGFTGEFIEALLAEEGIKNDFVEVKG-ETRINVKIKESSGEETELNEPGPEISEEELEQLLEKLRELL-ASGDIV 131 (303)
T ss_pred EEEEeCCchhHHHHHHHHHcCCCceEEECCC-CCEEeEEEEeCCCCEEEEeCcCCCCCHHHHHHHHHHHHHhc-cCCCEE
Confidence 466777665 4457999999998886431 1111111 11 244577777776554432210 02333
Q ss_pred EEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCC
Q 027620 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIG 169 (221)
Q Consensus 90 v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~ 169 (221)
++.|++....+.+.+.++++.++++ +.++++||... ..++ .+..++|+++||+.|+..++|.+..
T Consensus 132 ~i~~~~~~~~~~~~~~~~~~~~~~~--g~~v~~D~~~~---------~~~~----~~~~~~dil~~n~~E~~~l~g~~~~ 196 (303)
T TIGR03168 132 VISGSLPPGVPPDFYAQLIAIARKR--GAKVILDTSGE---------ALRE----ALAAKPFLIKPNHEELEELFGRELK 196 (303)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHHC--CCEEEEECCcH---------HHHH----HHhcCCcEECCCHHHHHHHhCCCCC
Confidence 3446544334567778889999888 89999999421 1111 2445899999999999999998777
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEE
Q 027620 170 SEADGREACKILHAAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 170 s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~ 201 (221)
+.+++.++++.+.++|++.|+||+|+ .|..+
T Consensus 197 ~~~~~~~~~~~l~~~g~~~vviT~g~-~G~~~ 227 (303)
T TIGR03168 197 TEEEIIEAARELLDRGAENVLVSLGA-DGALL 227 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeecC-CCcEE
Confidence 77888888999999999999999998 77544
No 39
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.34 E-value=3.3e-11 Score=102.85 Aligned_cols=159 Identities=20% Similarity=0.207 Sum_probs=109.5
Q ss_pred ccCccchhh---cHHHHHhcCCceeeeeeEEeecCCCCC---------cc--ceeeCCHHHHHHHHHHHHhcCcccccE-
Q 027620 25 VQGYVGNKS---AVFPLQLLGYDVDPIHSVQFSNHTGYP---------TF--KGQVLNGQQLCDLIEGLEANNLLYYTH- 89 (221)
Q Consensus 25 ~~G~vG~d~---~~~~l~~~gi~~~~v~~~~~~~~~~~~---------~~--~G~~l~~~~i~~~l~~i~~~~~l~~~~- 89 (221)
.+|.+|+|. .++.|++.||++..+.... .+.+.+. .+ .+..++.++++.+.+.+.+.-. .++.
T Consensus 55 ~is~vG~D~g~~i~~~l~~~gi~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 132 (289)
T cd01164 55 ALGFLGGFTGDFFEALLKEEGIPDDFVEVAG-ETRINVKIKEEDGTETEINEPGPEISEEELEALLEKLKALLK-KGDIV 132 (289)
T ss_pred EEEEccCchhHHHHHHHHHcCCCceEEECCC-CCEEEEEEEeCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCCEE
Confidence 467777664 4557999999998876431 1111111 11 2445777777766554432100 2443
Q ss_pred EEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCC
Q 027620 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIG 169 (221)
Q Consensus 90 v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~ 169 (221)
++.|.+|.....+.+.++++.++++ +.++++||+.. . +++.+.+++|+++||+.|++.+++....
T Consensus 133 ~i~g~~~~~~~~~~~~~~~~~~~~~--~~~i~~D~~~~---------~----~~~~~~~~~dil~~n~~E~~~l~~~~~~ 197 (289)
T cd01164 133 VLSGSLPPGVPADFYAELVRLAREK--GARVILDTSGE---------A----LLAALAAKPFLIKPNREELEELFGRPLG 197 (289)
T ss_pred EEeCCCCCCcCHHHHHHHHHHHHHc--CCeEEEECChH---------H----HHHHHhcCCcEECCCHHHHHHHhCCCCC
Confidence 4557776544456777888888887 88999999421 1 1121237999999999999999998877
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEE
Q 027620 170 SEADGREACKILHAAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 170 s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~ 201 (221)
+.+++.++++.|.++|++.|+||+|+ .|..+
T Consensus 198 ~~~~~~~~~~~l~~~g~~~vivt~G~-~G~~~ 228 (289)
T cd01164 198 DEEDVIAAARKLIERGAENVLVSLGA-DGALL 228 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC-CCCEE
Confidence 88889999999999999999999999 77654
No 40
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.34 E-value=2.3e-11 Score=105.01 Aligned_cols=153 Identities=21% Similarity=0.238 Sum_probs=100.3
Q ss_pred ccCccchhh----cHHHHHhcCCceeeeeeEE-eecCCCCCcc---------c-e--eeCCHHHHHHHH----HHHHhcC
Q 027620 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQ-FSNHTGYPTF---------K-G--QVLNGQQLCDLI----EGLEANN 83 (221)
Q Consensus 25 ~~G~vG~d~----~~~~l~~~gi~~~~v~~~~-~~~~~~~~~~---------~-G--~~l~~~~i~~~l----~~i~~~~ 83 (221)
.+|.+|+|. ..+.|+++||+++.+.... .++...+... . . ..++.+.....+ +.++..
T Consensus 66 ~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 144 (315)
T TIGR02198 66 LVGVVGDDEAGKRLEALLAEEGIDTSGLIRDKDRPTTTKTRVLARNQQLLRVDFEERDPINAELEARLLAAIREQLASA- 144 (315)
T ss_pred EEEEEecchhHHHHHHHHHHCCCCcceEEECCCCCcceEEEEEcCCeEEEEecCCCCCCCCHHHHHHHHHHHHhhhhhC-
Confidence 588899886 4457999999988775542 2222211111 1 0 124433222222 234433
Q ss_pred cccccEEEE-eecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHH
Q 027620 84 LLYYTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQ 162 (221)
Q Consensus 84 ~l~~~~v~~-G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~ 162 (221)
+.+.+ |+.....+.+.+.++++.++++ +++|++||+... + ..++++|+++||++|++.
T Consensus 145 ----~~v~~~~~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~----~-----------~~~~~~d~l~~n~~E~~~ 203 (315)
T TIGR02198 145 ----DAVVLSDYAKGVLTPRVVQEVIAAARKH--GKPVLVDPKGKD----F-----------SRYRGATLITPNRKEAEA 203 (315)
T ss_pred ----CEEEEecCCCCccCHHHHHHHHHHHHhc--CCCEEEeCCCcc----h-----------hhcCCCcEECCCHHHHHH
Confidence 33433 4433334467788889999988 999999995331 1 257899999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHH-HcCCCeEEEeeeeeCCcEE
Q 027620 163 LTGFRIGSEADGREACKILH-AAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 163 l~g~~~~s~~~~~~a~~~L~-~~G~~~VvVT~G~~~~~~~ 201 (221)
+++ ...+.++..+++++++ ++|++.|+||+|+ +|..+
T Consensus 204 l~~-~~~~~~~~~~~~~~l~~~~g~~~vivT~G~-~G~~~ 241 (315)
T TIGR02198 204 AVG-ACDTEAELVQAAEKLLEELDLEALLVTRSE-KGMTL 241 (315)
T ss_pred HhC-CCCCHHHHHHHHHHHHHHcCCCEEEEEcCC-CCeEE
Confidence 998 3445677788887776 5799999999999 77544
No 41
>PRK09850 pseudouridine kinase; Provisional
Probab=99.33 E-value=1.4e-11 Score=106.53 Aligned_cols=155 Identities=18% Similarity=0.256 Sum_probs=98.7
Q ss_pred ccCccchhh----cHHHHHhcCCceeeeeeEE-eecCCCCCcc--ce------------eeCCHHHHHHHHHHHHhcCcc
Q 027620 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQ-FSNHTGYPTF--KG------------QVLNGQQLCDLIEGLEANNLL 85 (221)
Q Consensus 25 ~~G~vG~d~----~~~~l~~~gi~~~~v~~~~-~~~~~~~~~~--~G------------~~l~~~~i~~~l~~i~~~~~l 85 (221)
.+|.+|+|. .++.|+++||+++.+.... .+|...+..+ .| ..++.+.+....+.++..++
T Consensus 59 ~ig~vG~D~~g~~i~~~l~~~gVd~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (313)
T PRK09850 59 LLSAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDMNISNAITAEYLAQHREFIQRAKV- 137 (313)
T ss_pred EEEEecCchhHHHHHHHHHHcCCCchheeecCCCCceEEEEEecCCCCEEEEecCchHhhhCCHHHHHHHHHHHhcCCE-
Confidence 588999886 5567999999998775442 1121111111 11 12333344433333444433
Q ss_pred cccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcC
Q 027620 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (221)
Q Consensus 86 ~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g 165 (221)
+++.. ..+.+.+..+++++ + +.++++||+.. +. ...+++ +++++|+++||++|++.|+|
T Consensus 138 ----v~~~~---~~~~~~~~~~~~~~--~--g~~v~~D~~~~-----~~----~~~~~~-~l~~~dil~~N~~Ea~~l~g 196 (313)
T PRK09850 138 ----IVADC---NISEEALAWILDNA--A--NVPVFVDPVSA-----WK----CVKVRD-RLNQIHTLKPNRLEAETLSG 196 (313)
T ss_pred ----EEEeC---CCCHHHHHHHHHhc--c--CCCEEEEcCCH-----HH----HHHHHh-hhccceEEccCHHHHHHHhC
Confidence 33322 12344555555533 3 77999999532 10 123444 78899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEEE
Q 027620 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFL 202 (221)
Q Consensus 166 ~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~~ 202 (221)
....+.+++.++++.|.+.|++.|+||+|+ +|..+.
T Consensus 197 ~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~-~G~~~~ 232 (313)
T PRK09850 197 IALSGREDVAKVAAWFHQHGLNRLVLSMGG-DGVYYS 232 (313)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeCC-ceEEEE
Confidence 877777788899999999999999999998 775543
No 42
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=99.33 E-value=1.8e-11 Score=104.58 Aligned_cols=155 Identities=23% Similarity=0.322 Sum_probs=108.6
Q ss_pred ccCccchhh----cHHHHHhcCCceeeeeeEE-eecCCCCCc-----------cce--eeCCHHHHHHHHHHHHhcCccc
Q 027620 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQ-FSNHTGYPT-----------FKG--QVLNGQQLCDLIEGLEANNLLY 86 (221)
Q Consensus 25 ~~G~vG~d~----~~~~l~~~gi~~~~v~~~~-~~~~~~~~~-----------~~G--~~l~~~~i~~~l~~i~~~~~l~ 86 (221)
.+|.+|+|. .++.|+++||+++++.... ..+...+.. ..| ..+++++++.+.+.++..++
T Consensus 50 ~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 127 (293)
T TIGR02152 50 MIGKVGDDAFGDELLENLKSNGIDTEYVGTVKDTPTGTAFITVDDTGENRIVVVAGANAELTPEDIDAAEALIAESDI-- 127 (293)
T ss_pred EEEEecCCccHHHHHHHHHHcCCCeeEEEEcCCCCCceEEEEEcCCCCEEEEEECCcCCcCCHHHHHHHHhhhccCCE--
Confidence 578888885 4567999999998886442 112111111 112 25677788776555654443
Q ss_pred ccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCC
Q 027620 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (221)
Q Consensus 87 ~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~ 166 (221)
+++. .+.+.+.+.++++.++++ +.++++||..... . .. . .+++++|+++||++|++.+++.
T Consensus 128 ---~~~~---~~~~~~~~~~~~~~~~~~--~~~v~~D~~~~~~--~-~~-------~-~~~~~~d~l~~n~~E~~~l~~~ 188 (293)
T TIGR02152 128 ---VLLQ---LEIPLETVLEAAKIAKKH--GVKVILNPAPAIK--D-LD-------D-ELLSLVDIITPNETEAEILTGI 188 (293)
T ss_pred ---EEEe---cCCCHHHHHHHHHHHHHc--CCEEEEECCcCcc--c-ch-------H-HHHhcCCEEccCHHHHHHHhCC
Confidence 3332 133456778889999988 8899999964311 0 10 1 3788999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEE
Q 027620 167 RIGSEADGREACKILHAAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 167 ~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~ 201 (221)
...+.+++.++++++.++|++.++||+|+ .|..+
T Consensus 189 ~~~~~~~~~~~~~~l~~~g~~~vvvt~G~-~g~~~ 222 (293)
T TIGR02152 189 EVTDEEDAEKAAEKLLEKGVKNVIITLGS-KGALL 222 (293)
T ss_pred CCCCcchHHHHHHHHHHcCCCeEEEEeCC-CceEE
Confidence 77777788888999999999999999999 66544
No 43
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=99.31 E-value=8.3e-12 Score=107.73 Aligned_cols=160 Identities=23% Similarity=0.198 Sum_probs=105.2
Q ss_pred CccCccchhh----cHHHHHhcCCceeeeeeEEeecCCCCCc-----------cce--eeCCHHHHHHHHHHHHhcCccc
Q 027620 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPT-----------FKG--QVLNGQQLCDLIEGLEANNLLY 86 (221)
Q Consensus 24 ~~~G~vG~d~----~~~~l~~~gi~~~~v~~~~~~~~~~~~~-----------~~G--~~l~~~~i~~~l~~i~~~~~l~ 86 (221)
..+|.+|+|. ..+.|+++||+++.+.....+|...+.. ..| ..++++++.. +.+++.+++
T Consensus 73 ~~i~~vG~D~~g~~i~~~l~~~GV~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~--~~l~~~~~v- 149 (312)
T cd01168 73 AFIGRVGDDKLGDFLLKDLRAAGVDTRYQVQPDGPTGTCAVLVTPDAERTMCTYLGAANELSPDDLDW--SLLAKAKYL- 149 (312)
T ss_pred EEEEEeccChhHHHHHHHHHHCCCccccccCCCCCceEEEEEEcCCCceeeecccchhhcCChhHCCH--HHHccCCEE-
Confidence 3588899886 4557999999998775432111111111 112 2455555543 345555543
Q ss_pred ccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCC
Q 027620 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (221)
Q Consensus 87 ~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~ 166 (221)
.+.|+.+. .+.+.+..+++.++++ +.++++||... +..+...+.+++ +++++|+++||++|++.|+|.
T Consensus 150 ---~~~~~~~~-~~~~~~~~~~~~a~~~--g~~v~~d~~~~-----~~~~~~~~~~~~-~l~~~d~l~~n~~E~~~l~~~ 217 (312)
T cd01168 150 ---YLEGYLLT-VPPEAILLAAEHAKEN--GVKIALNLSAP-----FIVQRFKEALLE-LLPYVDILFGNEEEAEALAEA 217 (312)
T ss_pred ---EEEEEecC-CCHHHHHHHHHHHHHc--CCEEEEeCCcH-----HHHHHHHHHHHH-HHhhCCEEEeCHHHHHHHhCC
Confidence 34454332 2237788889999988 89999999421 111223344555 889999999999999999986
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEEE
Q 027620 167 RIGSEADGREACKILHAAGPAKVVITSINIDGNLFL 202 (221)
Q Consensus 167 ~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~~ 202 (221)
+ .++..++++++++.|++.|+||+|+ +|..+.
T Consensus 218 ~---~~~~~~~a~~l~~~g~~~vvvt~G~-~G~~~~ 249 (312)
T cd01168 218 E---TTDDLEAALKLLALRCRIVVITQGA-KGAVVV 249 (312)
T ss_pred C---CCChHHHHHHHHhcCCCEEEEecCC-CCeEEE
Confidence 2 2355677889999999999999999 776543
No 44
>PRK09954 putative kinase; Provisional
Probab=99.31 E-value=3.9e-11 Score=105.94 Aligned_cols=154 Identities=18% Similarity=0.127 Sum_probs=100.9
Q ss_pred ccCccchhh----cHHHHHhcCCceeeeeeEEe-ecCCCCCc----------cce----eeCCHHHHHHHHHHHHhcCcc
Q 027620 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQF-SNHTGYPT----------FKG----QVLNGQQLCDLIEGLEANNLL 85 (221)
Q Consensus 25 ~~G~vG~d~----~~~~l~~~gi~~~~v~~~~~-~~~~~~~~----------~~G----~~l~~~~i~~~l~~i~~~~~l 85 (221)
.+|.+|+|. .++.|+++||+++++..... ++...+.. +.+ ..++++.++...+.+...+
T Consensus 112 ~ig~VG~D~~G~~i~~~l~~~GVd~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 189 (362)
T PRK09954 112 LLSAIGDDFYGETLLEETRRAGVNVSGCIRLHGQSTSTYLAIANRQDETVLAINDTHILQQLTPQLLNGSRDLIRHAG-- 189 (362)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCccceEEcCCCCCeEEEEEEcCCCCEEEEEcCchhhhcCCHHHHHHHHHHHhcCC--
Confidence 588899887 55689999999988765431 12111110 111 2455555655444454433
Q ss_pred cccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcC
Q 027620 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (221)
Q Consensus 86 ~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g 165 (221)
.+++..- .+.+.+..+++.+ + ++++++||..... .+.+++ +++++|+++||+.|++.++|
T Consensus 190 ---~v~~~~~---~~~~~~~~~~~~a--~--~~~v~~D~~~~~~---------~~~~~~-~l~~~dil~~n~~Ea~~l~g 249 (362)
T PRK09954 190 ---VVLADCN---LTAEALEWVFTLA--D--EIPVFVDTVSEFK---------AGKIKH-WLAHIHTLKPTQPELEILWG 249 (362)
T ss_pred ---EEEEECC---CCHHHHHHHHHhC--C--CCcEEEECCCHHH---------hhhhhh-hhccccEEecCHHHHHHHcC
Confidence 3444321 1234444455544 3 6789999953210 112333 88999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEE
Q 027620 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 166 ~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~ 201 (221)
.++.+.+++.++++.|.++|++.|+||+|+ +|..+
T Consensus 250 ~~~~~~~~~~~~~~~l~~~g~~~Vvvt~G~-~G~~~ 284 (362)
T PRK09954 250 QAITSDADRNAAVNALHQQGVQQIFVYLPD-ESVFC 284 (362)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeCC-ccEEE
Confidence 877767778888999999999999999999 77543
No 45
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=99.30 E-value=7.8e-11 Score=101.69 Aligned_cols=160 Identities=14% Similarity=0.077 Sum_probs=103.2
Q ss_pred ccCccchhh---cHHHHHhcCCceeeeeeEEeecCCCCCc----------cceeeCCHHHHHHHHHHHHhcCcccccE-E
Q 027620 25 VQGYVGNKS---AVFPLQLLGYDVDPIHSVQFSNHTGYPT----------FKGQVLNGQQLCDLIEGLEANNLLYYTH-L 90 (221)
Q Consensus 25 ~~G~vG~d~---~~~~l~~~gi~~~~v~~~~~~~~~~~~~----------~~G~~l~~~~i~~~l~~i~~~~~l~~~~-v 90 (221)
.+|.+|++. .++.|++ ||+++++.... .+.+.+.. ..|..++.++...+++.+... .-..+. +
T Consensus 55 ~~~~vGd~~G~~i~~~l~~-gI~~~~~~~~~-~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~ 131 (309)
T PRK13508 55 ATGLIGGELGQFIAEHLDD-QIKHAFYKIKG-ETRNCIAILHEGQQTEILEKGPEISVQEADGFLHHFKQL-LESVEVVA 131 (309)
T ss_pred EEEEecChhHHHHHHHHHc-CCCceEEECCC-CCeeeEEEEeCCCEEEEECCCCCCCHHHHHHHHHHHHHh-ccCCCEEE
Confidence 366777433 5567888 99988654321 12111111 123456655555444433221 012343 4
Q ss_pred EEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCC-
Q 027620 91 LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIG- 169 (221)
Q Consensus 91 ~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~- 169 (221)
+.|+++...+.+.+.++++.++++ ++++++||+.. . .+.+.. .+.++|+++||++|++.++|.+..
T Consensus 132 ~~g~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~---------~-~~~~~~-~~~~~dii~~n~~E~~~l~g~~~~~ 198 (309)
T PRK13508 132 ISGSLPAGLPVDYYAQLIELANQA--GKPVVLDCSGA---------A-LQAVLE-SPYKPTVIKPNIEELSQLLGKEVSE 198 (309)
T ss_pred EeCCCCCCcCHHHHHHHHHHHHHC--CCEEEEECCcH---------H-HHHHHh-ccCCceEEccCHHHHHHHhCCCCCC
Confidence 567766544457778889999988 99999999421 1 112222 467899999999999999997653
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEE
Q 027620 170 SEADGREACKILHAAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 170 s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~ 201 (221)
+.+++.+++++++..|++.|+||+|+ +|..+
T Consensus 199 ~~~~~~~~~~~~~~~g~~~vvvT~G~-~G~~~ 229 (309)
T PRK13508 199 DLDELKEVLQQPLFEGIEWIIVSLGA-DGAFA 229 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC-CceEE
Confidence 45677788888888899999999999 88644
No 46
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=99.29 E-value=1e-10 Score=100.96 Aligned_cols=158 Identities=14% Similarity=0.116 Sum_probs=103.9
Q ss_pred ccCccchhh---cHHHHHhcCCceeeeeeEEeecCCCCCc----------cceeeCCHHHHHHHHHH----HHhcCcccc
Q 027620 25 VQGYVGNKS---AVFPLQLLGYDVDPIHSVQFSNHTGYPT----------FKGQVLNGQQLCDLIEG----LEANNLLYY 87 (221)
Q Consensus 25 ~~G~vG~d~---~~~~l~~~gi~~~~v~~~~~~~~~~~~~----------~~G~~l~~~~i~~~l~~----i~~~~~l~~ 87 (221)
.+|.+|++. ..+.|+++||+++++.... .+.+.+.. ..|..+..+.....++. ++..++
T Consensus 54 ~i~~vG~~~G~~i~~~l~~~GV~~~~~~~~~-~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 129 (309)
T TIGR01231 54 ASGFLGGKLGEFIEKELDHSDIKHAFYKISG-ETRNCIAILHEGQQTEILEQGPEISNQEAAGFLKHFEQLLEKVEV--- 129 (309)
T ss_pred EEEEecChhHHHHHHHHHHcCCceeEEECCC-CCEEeEEEEeCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhccCCE---
Confidence 467777544 5567999999998776431 12121111 12334443333222222 333332
Q ss_pred cEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCC
Q 027620 88 THLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFR 167 (221)
Q Consensus 88 ~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~ 167 (221)
+.+.|+++...+.+.+.++++.++++ +.++++||+... .+.+.+ .++++|+++||++|++.++|.+
T Consensus 130 -v~~~g~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~----------~~~~~~-~~~~~dil~~n~~E~~~l~g~~ 195 (309)
T TIGR01231 130 -VAISGSLPKGLPQDYYAQIIERCQNK--GVPVVLDCSGAT----------LQTVLE-NPAKPTVIKPNIEELSQLLNQE 195 (309)
T ss_pred -EEEECCCCCCcCHHHHHHHHHHHHhC--CCeEEEECChHH----------HHHHHh-ccCCCeEEcCCHHHHHHHhCCC
Confidence 24567766555567888899999988 999999995321 122333 5678999999999999999976
Q ss_pred CC-CHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEE
Q 027620 168 IG-SEADGREACKILHAAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 168 ~~-s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~ 201 (221)
.. +.+++.++++.+..+|++.|++|+|+ +|..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~g~~~vivT~G~-~G~~~ 229 (309)
T TIGR01231 196 LTEDLESLKQALSQPLFSGIEWIIVSLGA-QGAFA 229 (309)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEccCC-CceEE
Confidence 43 45677777888888899999999999 78654
No 47
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.24 E-value=1.4e-10 Score=98.67 Aligned_cols=157 Identities=20% Similarity=0.234 Sum_probs=99.5
Q ss_pred CccCccchhh----cHHHHHhcCCceeeeeeEEeecCCCCCcc--cee------------eCCHHHHHHHHHHHHhcCcc
Q 027620 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPTF--KGQ------------VLNGQQLCDLIEGLEANNLL 85 (221)
Q Consensus 24 ~~~G~vG~d~----~~~~l~~~gi~~~~v~~~~~~~~~~~~~~--~G~------------~l~~~~i~~~l~~i~~~~~l 85 (221)
..+|.+|+|. .++.|+++||++..+.....+|...+..+ .|+ .++++.++...+.++..+++
T Consensus 53 ~~~~~lG~D~~g~~i~~~L~~~gI~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 132 (288)
T cd01941 53 ALLSAVGDDSEGESILEESEKAGLNVRGIVFEGRSTASYTAILDKDGDLVVALADMDIYELLTPDFLRKIREALKEAKPI 132 (288)
T ss_pred EEEEEEecCccHHHHHHHHHHcCCccceeeeCCCCcceEEEEECCCCCEEEEEechHhhhhCCHHHHHHHHHHHhcCCEE
Confidence 3588888886 55679999999988763222222211111 111 23333333333445444431
Q ss_pred cccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcC
Q 027620 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (221)
Q Consensus 86 ~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g 165 (221)
+..+.. +.+.+.++++.++++ +.++++||..... + ..+. .+++++|+++||++|+..+++
T Consensus 133 ----~~~~~~----~~~~~~~~~~~a~~~--~~~v~~d~~~~~~----~-----~~~~-~~~~~~dii~~n~~E~~~~~~ 192 (288)
T cd01941 133 ----VVDANL----PEEALEYLLALAAKH--GVPVAFEPTSAPK----L-----KKLF-YLLHAIDLLTPNRAELEALAG 192 (288)
T ss_pred ----EEeCCC----CHHHHHHHHHhhhhc--CCcEEEEccchHH----h-----ccch-hhcccceEEeCCHHHHHHHhC
Confidence 222332 345677788888887 8899999953211 1 1111 278899999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEE
Q 027620 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 166 ~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~ 201 (221)
....+.+....+++.+.+.|++.|++|+|+ +|..+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~vvit~G~-~Ga~~ 227 (288)
T cd01941 193 ALIENNEDENKAAKILLLPGIKNVIVTLGA-KGVLL 227 (288)
T ss_pred cccCCchhHHHHHHHHHHcCCcEEEEEeCC-CcEEE
Confidence 765444445566778888999999999999 77644
No 48
>PLN02323 probable fructokinase
Probab=99.23 E-value=5.8e-11 Score=103.41 Aligned_cols=162 Identities=14% Similarity=0.144 Sum_probs=101.0
Q ss_pred ccCccchhh----cHHHHHhcCCceeeeeeEE-eecC--------CC---CCcc--cee--eCCHHHHHHHHHHHHhcCc
Q 027620 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQ-FSNH--------TG---YPTF--KGQ--VLNGQQLCDLIEGLEANNL 84 (221)
Q Consensus 25 ~~G~vG~d~----~~~~l~~~gi~~~~v~~~~-~~~~--------~~---~~~~--~G~--~l~~~~i~~~l~~i~~~~~ 84 (221)
.+|.+|+|. .++.|+++||+++++.... ..+. .+ +... .|. .+++++++. +.++..++
T Consensus 62 ~i~~vG~D~~g~~i~~~L~~~GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 139 (330)
T PLN02323 62 FIGKVGDDEFGHMLADILKKNGVNNEGVRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDL--DLIRKAKI 139 (330)
T ss_pred EEEEecCChhHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCceeEEeecCCchhccCChHHCCh--HHHccCCE
Confidence 588999886 5567999999999876442 1111 11 1111 121 345555543 23444433
Q ss_pred ccccEEEEeecC--ChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCc-hhHHHHHHHhcCCCceEEecCHHHHH
Q 027620 85 LYYTHLLTGYIG--SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVP-SELVSVYREKVVPVASMLTPNQFEAE 161 (221)
Q Consensus 85 l~~~~v~~G~l~--~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~-~~~~~~l~~~ll~~~dvi~pN~~Ea~ 161 (221)
+..+.+. .+.....+.++++.++++ +.+|++||+++.. .|.+ +...+.+.+ +++++|+++||+.|++
T Consensus 140 -----~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~~--~~~~~~~~~~~~~~-~l~~~dil~~n~~E~~ 209 (330)
T PLN02323 140 -----FHYGSISLITEPCRSAHLAAMKIAKEA--GALLSYDPNLRLP--LWPSAEAAREGIMS-IWDEADIIKVSDEEVE 209 (330)
T ss_pred -----EEEechhccCchHHHHHHHHHHHHHHc--CCEEEEcCCCChh--hccCHHHHHHHHHH-HHHhCCEEEcCHHHHH
Confidence 3333221 223345667888999888 9999999986532 1212 233445555 8889999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEEEE
Q 027620 162 QLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLI 203 (221)
Q Consensus 162 ~l~g~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~~~ 203 (221)
.++|.+..+.++ +. +++..|++.|+||+|+ +|..+..
T Consensus 210 ~l~g~~~~~~~~---~~-~~~~~g~~~vvvt~G~-~G~~~~~ 246 (330)
T PLN02323 210 FLTGGDDPDDDT---VV-KLWHPNLKLLLVTEGE-EGCRYYT 246 (330)
T ss_pred HHhCCCCccHHH---HH-HHHhcCCCEEEEecCC-CceEEEe
Confidence 999875433322 22 4456799999999999 8865543
No 49
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=99.21 E-value=1.4e-10 Score=100.01 Aligned_cols=158 Identities=23% Similarity=0.323 Sum_probs=105.7
Q ss_pred CccCccchhh----cHHHHHhcCCceeeeeeEEeecCCCCC--cc-----------ce---eeCCHHHHHHHHHHHHhcC
Q 027620 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYP--TF-----------KG---QVLNGQQLCDLIEGLEANN 83 (221)
Q Consensus 24 ~~~G~vG~d~----~~~~l~~~gi~~~~v~~~~~~~~~~~~--~~-----------~G---~~l~~~~i~~~l~~i~~~~ 83 (221)
..+|.+|+|. .++.+++.||+++++..... .+|+.. .+ .| ..+++++++. ..+...+
T Consensus 55 ~~~~~vG~D~~g~~~~~~l~~~GVd~~~~~~~~~-~~tg~~~i~~~~~g~r~~~~~~~~a~~~~~~~~~~~--~~~~~~~ 131 (311)
T COG0524 55 ALIGAVGDDDFGEFLLEELRKEGVDTSHVVTDEG-ATTGLALILVDEDGERTFVFYRGAAALLLTPEDLDE--DELAGAD 131 (311)
T ss_pred EEEEEecCcHHHHHHHHHHHHcCCccceEEEcCC-CcceEEEEEEcCCCceeEEEECCcccccCChHHcCh--HHHhhcC
Confidence 3678899887 55689999999998876643 222211 11 12 1255666653 2344444
Q ss_pred cccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHh
Q 027620 84 LLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQL 163 (221)
Q Consensus 84 ~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l 163 (221)
.++ +.++.+... .+.+.++++.++++ +.++++|++++.. +++ .+.+.. .++.+|++++|++|++.+
T Consensus 132 ~~~----~~~~~l~~~-~~~~~~~~~~a~~~--g~~v~~d~~~~~~---~~~---~~~~~~-~l~~~d~~~~n~~E~~~l 197 (311)
T COG0524 132 VLH----ISGIQLEIP-PEALLAALELAKAA--GVTVSFDLNPRPA---LWD---RELLEE-LLALADILFPNEEEAELL 197 (311)
T ss_pred eee----EEEeecCCC-hHHHHHHHHHHHHc--CCeEEEecCCCcc---ccc---hhhHHH-HHhhCCEEeCCHHHHHHH
Confidence 433 233322222 28888999999998 9999999988743 122 234444 889999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEEEE
Q 027620 164 TGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLI 203 (221)
Q Consensus 164 ~g~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~~~ 203 (221)
+|. . ++..++.+.++..|++.|++|+|+ +|..++.
T Consensus 198 ~g~-~---~~~~~~~~~~~~~~~~~vvvt~G~-~Ga~~~~ 232 (311)
T COG0524 198 TGL-E---EDAEAAAALLLAKGVKTVVVTLGA-EGAVVFT 232 (311)
T ss_pred hCC-C---ccHHHHHHHHhhcCCCEEEEEeCC-CcEEEEe
Confidence 986 1 233444467788999999999999 6765544
No 50
>PRK15074 inosine/guanosine kinase; Provisional
Probab=99.21 E-value=6.3e-11 Score=106.93 Aligned_cols=157 Identities=19% Similarity=0.142 Sum_probs=100.9
Q ss_pred CccCccchh-h----cHHHHH--hcCCceeeeeeEEeecCCC--CCcc--c---------e--eeCCHHHHHHHHHHHHh
Q 027620 24 TVQGYVGNK-S----AVFPLQ--LLGYDVDPIHSVQFSNHTG--YPTF--K---------G--QVLNGQQLCDLIEGLEA 81 (221)
Q Consensus 24 ~~~G~vG~d-~----~~~~l~--~~gi~~~~v~~~~~~~~~~--~~~~--~---------G--~~l~~~~i~~~l~~i~~ 81 (221)
..+|.||+| . .++.|+ +.||+++.+..... .|+ ++.+ + | ..+++++++. +.++.
T Consensus 111 ~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~~--~TG~~~VlV~~dGeRt~~t~~GA~~~Lt~edld~--~~i~~ 186 (434)
T PRK15074 111 VLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVDG--PIGRCFTLISEDGERTFAISPGHMNQLRPESIPE--DVIAG 186 (434)
T ss_pred EEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcCC--CCEEEEEEECCCCCEEEEEecChhhcCChhHCCH--hHhcc
Confidence 368899977 3 345676 68999988754321 233 2221 1 2 2556666653 34555
Q ss_pred cCcccccEEEEeecCC----hhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCH
Q 027620 82 NNLLYYTHLLTGYIGS----VSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQ 157 (221)
Q Consensus 82 ~~~l~~~~v~~G~l~~----~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~ 157 (221)
.+++ .+.|++.. +...+++.++++.++++ |++|++||+.+.. .....+ .+.+.+++++|++++|+
T Consensus 187 a~il----yl~Gy~l~~~~~~~~~~a~~~al~~Ake~--G~~VslD~s~~~~--v~~~~~---~~~e~l~~~vDILf~Ne 255 (434)
T PRK15074 187 ASAL----VLTAYLVRCKPGEPMPEATMKAIEYAKKH--NVPVVLTLGTKFV--IEDNPQ---WWQEFLKEHVSILAMNE 255 (434)
T ss_pred CCEE----EEeeeehhcccCCCcHHHHHHHHHHHHHc--CCEEEEECcchhh--ccccHH---HHHHHHHhcCCEEEcCH
Confidence 5543 24565432 12357788899999998 9999999975421 001111 22223567999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEEE
Q 027620 158 FEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFL 202 (221)
Q Consensus 158 ~Ea~~l~g~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~~ 202 (221)
+|+..|+|.. +.+++++.+.+ +++.|+||+|+ +|..+.
T Consensus 256 eEa~~LtG~~-----d~eea~~~L~~-~~~~VVVTlG~-~Ga~v~ 293 (434)
T PRK15074 256 DEAEALTGES-----DPLLASDKALD-WVDLVLCTAGP-IGLYMA 293 (434)
T ss_pred HHHHHHhCCC-----CHHHHHHHHHc-CCCEEEEEECC-CCEEEE
Confidence 9999999862 45566777765 47899999999 886544
No 51
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=99.17 E-value=1.6e-10 Score=104.33 Aligned_cols=160 Identities=17% Similarity=0.138 Sum_probs=99.5
Q ss_pred ccCccchhh----cHHHHHhcCCceeeeeeEEeecCCCCCc-----------ccee--eCCHHHHHHHHHHHHhcCcccc
Q 027620 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPT-----------FKGQ--VLNGQQLCDLIEGLEANNLLYY 87 (221)
Q Consensus 25 ~~G~vG~d~----~~~~l~~~gi~~~~v~~~~~~~~~~~~~-----------~~G~--~l~~~~i~~~l~~i~~~~~l~~ 87 (221)
.+|.+|+|. .++.|+++||++..+.....++.+.+.. ..|. .++.+++ ..+.++..+++
T Consensus 153 ~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~~~~~Tg~~~ilv~~~gertii~~~Ga~~~l~~~~~--~~~~i~~adiv-- 228 (426)
T PLN02813 153 MAGSVGSDPLGDFYRTKLRRANVHFLSQPVKDGTTGTVIVLTTPDAQRTMLSYQGTSSTVNYDSC--LASAISKSRVL-- 228 (426)
T ss_pred EEEEeCCChHHHHHHHHHHHcCCcccceecCCCCceEEEEEEcCCCCceeeeccCchhhCCcccc--CHHHHhcCCEE--
Confidence 578888886 5678999999988765332112111111 1122 2332222 12345555542
Q ss_pred cEEEEeecC-ChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCC
Q 027620 88 THLLTGYIG-SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (221)
Q Consensus 88 ~~v~~G~l~-~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~ 166 (221)
++.|+++ .+...+.+.++++.++++ +++|++||..... ....++.+.+.+++++|++++|++|+..|+|.
T Consensus 229 --~l~g~~~~~~~~~~~~~~~~~~ak~~--g~~v~~d~s~~~~-----~~~~~~~l~~~ll~~vDil~~Ne~Ea~~l~g~ 299 (426)
T PLN02813 229 --VVEGYLWELPQTIEAIAQACEEAHRA--GALVAVTASDVSC-----IERHRDDFWDVMGNYADILFANSDEARALCGL 299 (426)
T ss_pred --EEEeeecCCCchHHHHHHHHHHHHHc--CCEEEEECCCcch-----hhhhHHHHHHHHHhcCCEEEeCHHHHHHHhCC
Confidence 3446543 122357788899999998 9999999853211 11112233333668999999999999999986
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEE
Q 027620 167 RIGSEADGREACKILHAAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 167 ~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~ 201 (221)
.. .++..++++.|. .+++.|+||+|+ +|..+
T Consensus 300 ~~--~~~~~~a~~~L~-~~~~~VVVT~G~-~Ga~~ 330 (426)
T PLN02813 300 GS--EESPESATRYLS-HFCPLVSVTDGA-RGSYI 330 (426)
T ss_pred CC--CCCHHHHHHHHH-cCCCEEEEEeCC-CCeEE
Confidence 32 235566666664 688999999999 88644
No 52
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.17 E-value=6.4e-10 Score=101.55 Aligned_cols=151 Identities=19% Similarity=0.163 Sum_probs=95.6
Q ss_pred ccCccchhh----cHHHHHhcCCceeeeeeEEeecCCCCCcc---------c----eeeCCHHHHHHH-HHHHHhcCccc
Q 027620 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPTF---------K----GQVLNGQQLCDL-IEGLEANNLLY 86 (221)
Q Consensus 25 ~~G~vG~d~----~~~~l~~~gi~~~~v~~~~~~~~~~~~~~---------~----G~~l~~~~i~~~-l~~i~~~~~l~ 86 (221)
.+|.+|+|. ..+.|+++||+++.+.....+|.+.+..+ . ...++.+++... .+.+++.
T Consensus 69 ~i~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~---- 144 (473)
T PRK11316 69 LVGLTGIDEAARALSKLLAAVGVKCDFVSVPTHPTITKLRVLSRNQQLIRLDFEEGFEGVDPQPLLERIEQALPSI---- 144 (473)
T ss_pred EEEEEcCCHHHHHHHHHHHHcCCceeEEEcCCCCCCeeEEEEeCCceEEecccccCCCchhHHHHHHHHHHHhccC----
Confidence 588899886 55679999999987754332232211111 1 012233333222 2234433
Q ss_pred ccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCC
Q 027620 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (221)
Q Consensus 87 ~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~ 166 (221)
+.+.++.++.+ ..+.+.++++.++++ +.++++||.... + ..++.+|+++||+.|++.++|.
T Consensus 145 -~~v~is~~~~~-~~~~~~~~~~~~k~~--g~~vv~Dp~~~~----~-----------~~~~~~dil~pN~~Ea~~l~g~ 205 (473)
T PRK11316 145 -GALVLSDYAKG-ALASVQAMIQLARKA--GVPVLIDPKGTD----F-----------ERYRGATLLTPNLSEFEAVVGK 205 (473)
T ss_pred -CEEEEecCCcc-chhHHHHHHHHHHhc--CCeEEEeCCCCC----c-----------cccCCCeEECcCHHHHHHHhCC
Confidence 33333222222 135577888889888 899999995321 1 2567899999999999999985
Q ss_pred CCCCHHHHHHHHHHHH-HcCCCeEEEeeeeeCCcE
Q 027620 167 RIGSEADGREACKILH-AAGPAKVVITSINIDGNL 200 (221)
Q Consensus 167 ~~~s~~~~~~a~~~L~-~~G~~~VvVT~G~~~~~~ 200 (221)
. .+.+++.+++++++ ++|++.|+||+|. +|..
T Consensus 206 ~-~~~~~~~~~~~~l~~~~g~~~vvVT~G~-~G~~ 238 (473)
T PRK11316 206 C-KDEAELVEKGMKLIADYDLSALLVTRSE-QGMT 238 (473)
T ss_pred C-CCHHHHHHHHHHHHHhcCCCEEEEEecC-CCcE
Confidence 2 34566666666665 7899999999998 6753
No 53
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=99.16 E-value=1.7e-10 Score=98.47 Aligned_cols=162 Identities=27% Similarity=0.328 Sum_probs=106.9
Q ss_pred ccCccchhh----cHHHHHhcCCceeeeeeEE-eecCC--------C---CCccce--eeCCHHHHHHHHHHHHhcCccc
Q 027620 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQ-FSNHT--------G---YPTFKG--QVLNGQQLCDLIEGLEANNLLY 86 (221)
Q Consensus 25 ~~G~vG~d~----~~~~l~~~gi~~~~v~~~~-~~~~~--------~---~~~~~G--~~l~~~~i~~~l~~i~~~~~l~ 86 (221)
.+|.+|+|. ..+.|+++||+++++.... .++.. + +....+ ..++.+++ ..+.+...+++
T Consensus 55 ~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~- 131 (301)
T PF00294_consen 55 LIGKVGDDFFGEIILEELKERGVDTSYIPRDGDEPTGRCLIIVDPDGERTFVFSPGANSDLTPDEL--DEEAIDEADIL- 131 (301)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEEETTSEEEEEEEEGGGGGGGHHHH--HHHHHHTESEE-
T ss_pred EEeeccCcchhhhhhhccccccccccccccccccccceeEeeecccccceeeeccccccccccccc--cccccccccce-
Confidence 578888887 5567999999998887542 11211 1 110111 13333334 33455555442
Q ss_pred ccEEEEe-ecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcC
Q 027620 87 YTHLLTG-YIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (221)
Q Consensus 87 ~~~v~~G-~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g 165 (221)
.+.| .++.+.+.+.+..+.+.++++ + . +||+..+. .+ ....+.+++ +++.+|+++||++|+..+++
T Consensus 132 ---~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~--~~~~~~~~---~~-~~~~~~~~~-~l~~~dil~~n~~E~~~l~~ 198 (301)
T PF00294_consen 132 ---HLSGVSLPEGIPEDLLEALAKAAKKN--G-P--FDPVFRDP---SW-DDLREDLKE-LLPYADILKPNEEEAEALTG 198 (301)
T ss_dssp ---EEESGHCSTTSHHHHHHHHHHHHHHT--T-E--EEEEEEGG---GS-HHHHHHHHH-HHHTSSEEEEEHHHHHHHHT
T ss_pred ---eecccccccccccceeeecccccccc--c-c--cccccccc---cc-cccchhhhh-hccccchhcccccccccccc
Confidence 3455 465566667777777777776 4 1 33333211 01 113456665 77999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEEEE
Q 027620 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLI 203 (221)
Q Consensus 166 ~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~~~ 203 (221)
....+.+++.++++.++.+|++.+++|+|+ +|..++.
T Consensus 199 ~~~~~~~~~~~~~~~l~~~g~~~vivt~G~-~G~~~~~ 235 (301)
T PF00294_consen 199 SKIDDPEDALAALRELQARGVKIVIVTLGE-DGALYYT 235 (301)
T ss_dssp CSTSSHHHHHHHHHHHHHTTSSEEEEEEGG-GEEEEEE
T ss_pred ccccchhhhhccccccchhhhhhhhccccc-cCccccc
Confidence 988788999999999999999999999999 7765543
No 54
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=99.16 E-value=1.2e-10 Score=99.37 Aligned_cols=162 Identities=22% Similarity=0.250 Sum_probs=99.4
Q ss_pred CccCccchhh----cHHHHHhcCCceeeeeeE-EeecCCCCCcc--cee---eC--C-HHH-H-H--HHHHHHHhcCccc
Q 027620 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSV-QFSNHTGYPTF--KGQ---VL--N-GQQ-L-C--DLIEGLEANNLLY 86 (221)
Q Consensus 24 ~~~G~vG~d~----~~~~l~~~gi~~~~v~~~-~~~~~~~~~~~--~G~---~l--~-~~~-i-~--~~l~~i~~~~~l~ 86 (221)
..+|.+|+|. ..+.|+++||++.++... ..+|...+..+ .|+ .+ . ..+ . + ...+.++..
T Consensus 46 ~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~---- 121 (295)
T cd01167 46 AFIGKVGDDEFGDFLLETLKEAGVDTRGIQFDPAAPTTLAFVTLDADGERSFEFYRGPAADLLLDTELNPDLLSEA---- 121 (295)
T ss_pred EEEEeecCcHHHHHHHHHHHHcCCCchheeecCCCCceEEEEEECCCCCEeEEeecCCcHhhhcCccCChhHhccC----
Confidence 3688899886 456799999999877633 22222211111 111 00 0 000 0 0 011234433
Q ss_pred ccEEEEeecC--ChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCc-hhHHHHHHHhcCCCceEEecCHHHHHHh
Q 027620 87 YTHLLTGYIG--SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVP-SELVSVYREKVVPVASMLTPNQFEAEQL 163 (221)
Q Consensus 87 ~~~v~~G~l~--~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~-~~~~~~l~~~ll~~~dvi~pN~~Ea~~l 163 (221)
+.+.++..+ ++...+.+.++++.++++ +.++++||..+.. .|.. ....+.+.+ +++++|+++||+.|++.+
T Consensus 122 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~v~~d~~~~~~--~~~~~~~~~~~~~~-~l~~~d~l~~n~~E~~~l 195 (295)
T cd01167 122 -DILHFGSIALASEPSRSALLELLEAAKKA--GVLISFDPNLRPP--LWRDEEEARERIAE-LLELADIVKLSDEELELL 195 (295)
T ss_pred -CEEEEechhhccchHHHHHHHHHHHHHHc--CCEEEEcCCCChh--hcCCHHHHHHHHHH-HHHhCCEEEecHHHHHHH
Confidence 334444432 233356778899999887 8999999975421 1211 222344555 889999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEE
Q 027620 164 TGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 164 ~g~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~ 201 (221)
++.. ...++++.+.++|++.++||+|+ +|..+
T Consensus 196 ~~~~-----~~~~~~~~l~~~g~~~vvvt~G~-~G~~~ 227 (295)
T cd01167 196 FGEE-----DPEEIAALLLLFGLKLVLVTRGA-DGALL 227 (295)
T ss_pred hCCC-----CHHHHHHHHhhcCCCEEEEecCC-cceEE
Confidence 9864 23445677888999999999999 77544
No 55
>PLN02548 adenosine kinase
Probab=99.16 E-value=3.3e-10 Score=98.76 Aligned_cols=163 Identities=17% Similarity=0.139 Sum_probs=97.6
Q ss_pred ccCccchhh----cHHHHHhcCCceeeeeeEEeecCCCCCcc-cee-----------eCCHHHHHH--HHHHHHhcCccc
Q 027620 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPTF-KGQ-----------VLNGQQLCD--LIEGLEANNLLY 86 (221)
Q Consensus 25 ~~G~vG~d~----~~~~l~~~gi~~~~v~~~~~~~~~~~~~~-~G~-----------~l~~~~i~~--~l~~i~~~~~l~ 86 (221)
.+|.+|+|. ..+.|+++||+++++.....+|...+... .|+ .++.+++.. ..+.++..+++
T Consensus 74 ~ig~vG~D~~g~~i~~~L~~~gVd~~~~~~~~~~T~~~~i~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v- 152 (332)
T PLN02548 74 YMGCIGKDKFGEEMKKCATAAGVNVHYYEDESTPTGTCAVLVVGGERSLVANLSAANCYKVEHLKKPENWALVEKAKFY- 152 (332)
T ss_pred EEEEEcCChhHHHHHHHHHHcCCceeeeccCCCCCceEEEEEecCCceeeeccchhhcCCHHHhcChhhHhHHhhCCEE-
Confidence 578888887 55679999999987743222222211111 111 234333321 12234444432
Q ss_pred ccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCC
Q 027620 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (221)
Q Consensus 87 ~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~ 166 (221)
.+.|+.+ ..+.+.+.++++.++++ +.++.+|+... ++.+...+.+++ +++++|+++||+.|++.++|.
T Consensus 153 ---~~~g~~~-~~~~~~~~~~~~~a~~~--g~~~~~~~~~~-----~~~~~~~~~l~~-~l~~~dil~~n~~E~~~l~g~ 220 (332)
T PLN02548 153 ---YIAGFFL-TVSPESIMLVAEHAAAN--NKTFMMNLSAP-----FICEFFKDQLME-ALPYVDFLFGNETEARTFAKV 220 (332)
T ss_pred ---EEEEEEc-cCCHHHHHHHHHHHHHc--CCEEEEECCCh-----hHHHHhHHHHHH-HHhhCCEEEecHHHHHHHhCc
Confidence 3345443 23346677788888887 77888887321 122222344555 888999999999999999986
Q ss_pred CCCCHHHHHHHHHHHHH----c--CCCeEEEeeeeeCCcEE
Q 027620 167 RIGSEADGREACKILHA----A--GPAKVVITSINIDGNLF 201 (221)
Q Consensus 167 ~~~s~~~~~~a~~~L~~----~--G~~~VvVT~G~~~~~~~ 201 (221)
...+.++..++++++.+ + |++.|+||+|+ +|..+
T Consensus 221 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~vvvT~G~-~G~~~ 260 (332)
T PLN02548 221 QGWETEDVEEIALKISALPKASGTHKRTVVITQGA-DPTVV 260 (332)
T ss_pred cCCCcccHHHHHHHHHHhhhhccccCCEEEEEeCC-CcEEE
Confidence 43333345555444433 2 68899999998 78654
No 56
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=99.15 E-value=3e-10 Score=97.60 Aligned_cols=159 Identities=19% Similarity=0.193 Sum_probs=100.6
Q ss_pred CccCccchhh----cHHHHHhcCCceeeeeeEE-eecCCCCCccc--ee-------------eCCHHHHHHHHHHHHhcC
Q 027620 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQ-FSNHTGYPTFK--GQ-------------VLNGQQLCDLIEGLEANN 83 (221)
Q Consensus 24 ~~~G~vG~d~----~~~~l~~~gi~~~~v~~~~-~~~~~~~~~~~--G~-------------~l~~~~i~~~l~~i~~~~ 83 (221)
..+|.+|+|. ..+.|+++||+++++.... ..++..+.... |+ .++.++++ .+...+
T Consensus 46 ~~v~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~~ 121 (304)
T PRK09434 46 GFIGRVGDDPFGRFMQQTLQDEGVDTTYLRLDPAHRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQDLP----PFRQGE 121 (304)
T ss_pred eEEEEecCchHHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCCEeEEEecCCchhhhCCHHHhh----hhcCCC
Confidence 3688899886 5568999999998776432 11111111111 11 12223332 233333
Q ss_pred cccccEEEEeecC-ChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCc-hhHHHHHHHhcCCCceEEecCHHHHH
Q 027620 84 LLYYTHLLTGYIG-SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVP-SELVSVYREKVVPVASMLTPNQFEAE 161 (221)
Q Consensus 84 ~l~~~~v~~G~l~-~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~-~~~~~~l~~~ll~~~dvi~pN~~Ea~ 161 (221)
+++. .++.. .+...+...++++.++++ +.++++||+++.. .|.. +...+.+.+ +++++|++++|++|+.
T Consensus 122 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~D~~~~~~--~~~~~~~~~~~~~~-~l~~~dil~~n~~e~~ 192 (304)
T PRK09434 122 WLHL----CSIALSAEPSRSTTFEAMRRIKAA--GGFVSFDPNLRED--LWQDEAELRECLRQ-ALALADVVKLSEEELC 192 (304)
T ss_pred EEEE----ccccccCchHHHHHHHHHHHHHHc--CCEEEECCCCChh--hccCHHHHHHHHHH-HHHhcceeeCCHHHHH
Confidence 3222 12211 223356677888999988 8999999986532 2222 233444554 8899999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHH-cCCCeEEEeeeeeCCcEE
Q 027620 162 QLTGFRIGSEADGREACKILHA-AGPAKVVITSINIDGNLF 201 (221)
Q Consensus 162 ~l~g~~~~s~~~~~~a~~~L~~-~G~~~VvVT~G~~~~~~~ 201 (221)
.++|.. +..++++++.+ .|++.|+||+|+ +|..+
T Consensus 193 ~l~g~~-----~~~~~~~~l~~~~g~~~vvvt~G~-~G~~~ 227 (304)
T PRK09434 193 FLSGTS-----QLEDAIYALADRYPIALLLVTLGA-EGVLV 227 (304)
T ss_pred HHhCCC-----CHHHHHHHHHhhcCCcEEEEEecC-CceEE
Confidence 999863 56677888876 789999999999 77654
No 57
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.14 E-value=2.3e-10 Score=97.36 Aligned_cols=162 Identities=19% Similarity=0.069 Sum_probs=96.2
Q ss_pred CCCeEEEEeccCccCccchhhcHHHHHhcCCceeeeeeEEeecC-CCCCccceeeCCHHHHHHHHHHHHhcCcccccEEE
Q 027620 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNH-TGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (221)
Q Consensus 13 ~~~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v~~~~~~~~-~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~~v~ 91 (221)
+-+++|.|.|++.++..+.-+.+..++. .+..++....++. +.+. ..++.+...++++..+.+...-. .+++++
T Consensus 23 ~~G~vliiaGs~~~~GA~ila~l~~~~~---g~~~v~~~~~~~~~~~i~-~~~pe~~~~~~~~~~~~~~~~~~-~~davv 97 (272)
T TIGR00196 23 QYGRVLIIGGSDDYSGAPLLAALAALRA---GAGLVTVAAPENVITLIN-SVSPELIVHRLGWKVDEDEELLE-RYDVVV 97 (272)
T ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHh---CCCeEEEEEchhhHHHHh-hcCCEEEEecchhhHHHHHhhhc-cCCEEE
Confidence 4578999999998887766555555544 4444443332221 1111 11222221222212222221100 246666
Q ss_pred Eee-cCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCC
Q 027620 92 TGY-IGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGS 170 (221)
Q Consensus 92 ~G~-l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s 170 (221)
+|+ ++++.. +.++++.++++ +.++++||. |..+.. .. ......+++++||..|++.|+|.+..+
T Consensus 98 ig~Gl~~~~~---~~~l~~~~~~~--~~pvVlDa~----g~~l~~-----~~-~~~~~~~~vItPN~~El~~L~g~~~~~ 162 (272)
T TIGR00196 98 IGPGLGQDPS---FKKAVEEVLEL--DKPVVLDAD----ALNLLT-----YD-KPKREGEVILTPHPGEFKRLLGLVNEI 162 (272)
T ss_pred EcCCCCCCHH---HHHHHHHHHhc--CCCEEEEhH----HHHHHh-----hc-ccccCCCEEECCCHHHHHHHhCCchhh
Confidence 666 776443 66778888877 889999983 221111 00 001347899999999999999987777
Q ss_pred HHHHHHHHHHHHHcCCCeEEEeeee
Q 027620 171 EADGREACKILHAAGPAKVVITSIN 195 (221)
Q Consensus 171 ~~~~~~a~~~L~~~G~~~VvVT~G~ 195 (221)
.+++.+++++|.+++. .++++.|.
T Consensus 163 ~~~~~~aa~~l~~~~~-~vVv~kG~ 186 (272)
T TIGR00196 163 QGDRLEAAQDIAQKLQ-AVVVLKGA 186 (272)
T ss_pred hhhHHHHHHHHHHHhC-CEEEEcCC
Confidence 7888899999987654 46666666
No 58
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.13 E-value=2e-10 Score=97.99 Aligned_cols=158 Identities=16% Similarity=0.133 Sum_probs=96.2
Q ss_pred ccCccchhh----cHHHHHhcCCceeeeeeEEeecC--------CCC---Ccccee--eCCHHHHHHHHHHHHhcCcccc
Q 027620 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNH--------TGY---PTFKGQ--VLNGQQLCDLIEGLEANNLLYY 87 (221)
Q Consensus 25 ~~G~vG~d~----~~~~l~~~gi~~~~v~~~~~~~~--------~~~---~~~~G~--~l~~~~i~~~l~~i~~~~~l~~ 87 (221)
.+|.+|+|. ..+.|+++||+++.+......+. .+- ....|. .++++.++.. .+...+++
T Consensus 54 ~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-- 129 (289)
T cd01944 54 NAGPLGNGNWADQIRQAMRDEGIEILLPPRGGDDGGCLVALVEPDGERSFISISGAEQDWSTEWFATL--TVAPYDYV-- 129 (289)
T ss_pred EEEEecCChHHHHHHHHHHHcCCccccccccCCCCeEEEEEEcCCCceEEEEeCCccCCCCHHHhccc--cCCCCCEE--
Confidence 588899887 55679999999987755421111 111 011121 3344444332 13333332
Q ss_pred cEEEEeecC--ChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcC
Q 027620 88 THLLTGYIG--SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (221)
Q Consensus 88 ~~v~~G~l~--~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g 165 (221)
.+.|+.. .+...+.+.++++.++ . +.++++||+++.. ++.. +.+++ +++++|+++||++|++.|+|
T Consensus 130 --~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~v~~D~~~~~~---~~~~---~~~~~-~l~~~d~~~~n~~E~~~l~g 197 (289)
T cd01944 130 --YLSGYTLASENASKVILLEWLEALP-A--GTTLVFDPGPRIS---DIPD---TILQA-LMAKRPIWSCNREEAAIFAE 197 (289)
T ss_pred --EEeCccccCcchhHHHHHHHHHhcc-C--CCEEEEcCccccc---ccCH---HHHHH-HHhcCCEEccCHHHHHHHhC
Confidence 2444432 2223566666666644 3 6789999987632 1222 23343 88999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEEE
Q 027620 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFL 202 (221)
Q Consensus 166 ~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~~ 202 (221)
.... +...+++++.+.|++.|+||+|+ +|..+.
T Consensus 198 ~~~~---~~~~~~~~~~~~~~~~vvvt~G~-~Ga~~~ 230 (289)
T cd01944 198 RGDP---AAEASALRIYAKTAAPVVVRLGS-NGAWIR 230 (289)
T ss_pred CCCc---chHHHHHHHHhccCCeEEEEECC-CcEEEE
Confidence 7532 22344677788899999999999 776443
No 59
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.13 E-value=8e-10 Score=88.47 Aligned_cols=91 Identities=29% Similarity=0.353 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCCHHHHHHHHHH
Q 027620 101 LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKI 180 (221)
Q Consensus 101 ~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s~~~~~~a~~~ 180 (221)
.+.+.++++.++++ +.++++||...... +..+ .+.+ +++++|+++||++|++.+++....+.++..++++.
T Consensus 70 ~~~~~~~~~~~~~~--~~~v~~D~~~~~~~--~~~~----~~~~-~~~~~dvl~~n~~E~~~l~~~~~~~~~~~~~~~~~ 140 (196)
T cd00287 70 PEAVLDALEEARRR--GVPVVLDPGPRAVR--LDGE----ELEK-LLPGVDILTPNEEEAEALTGRRDLEVKEAAEAAAL 140 (196)
T ss_pred HHHHHHHHHHHHHc--CCeEEEeCCccccc--cccc----hHHH-HHhhCCEECCCHHHHHHHhCCCCCChHHHHHHHHH
Confidence 46677888889888 89999999765321 1111 1333 88899999999999999999877666778888999
Q ss_pred HHHcCCCeEEEeeeeeCCcEE
Q 027620 181 LHAAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 181 L~~~G~~~VvVT~G~~~~~~~ 201 (221)
+.++|++.|++|+|+ +|..+
T Consensus 141 l~~~g~~~vvvt~G~-~g~~~ 160 (196)
T cd00287 141 LLSKGPKVVIVTLGE-KGAIV 160 (196)
T ss_pred HHhcCCCEEEEEECC-CccEE
Confidence 999999999999998 66544
No 60
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.09 E-value=7.4e-10 Score=93.16 Aligned_cols=161 Identities=21% Similarity=0.162 Sum_probs=99.3
Q ss_pred CCCeEEEEeccCccCccchhhcHHHHHhcCCceeeeeeEEeecCCC-CCccc----eeeCCHHHHHHHHHHHHhcCcccc
Q 027620 13 ETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTG-YPTFK----GQVLNGQQLCDLIEGLEANNLLYY 87 (221)
Q Consensus 13 ~~~~vl~i~~~~~~G~vG~d~~~~~l~~~gi~~~~v~~~~~~~~~~-~~~~~----G~~l~~~~i~~~l~~i~~~~~l~~ 87 (221)
.-++||.|.|++.++..|.-+.+..++ .|.....+.+.. +... +.... -.++..+..+++.+.+. .+
T Consensus 7 ~~g~vl~i~Gs~~~~GA~~la~~~a~~-~G~g~vt~~~~~--~~~~~~~~~~pe~i~~~~~~~~~~~~~~~~~-----~~ 78 (254)
T cd01171 7 SRGRVLVIGGSRGYTGAAYLAALAALR-AGAGLVTVATPP--EAAAVIKSYSPELMVHPLLETDIEELLELLE-----RA 78 (254)
T ss_pred CCCeEEEEeCCCCCccHHHHHHHHHHH-HccCEEEEEECH--hhHHHHHhcCceeeEecccccchHHHHhhhc-----cC
Confidence 357899999999999999888777777 466544443321 2111 11000 01222122223222232 35
Q ss_pred cEEEEee-cCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCC
Q 027620 88 THLLTGY-IGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (221)
Q Consensus 88 ~~v~~G~-l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~ 166 (221)
+++++|+ +++. +.+.++++.++++ +.++++||.... +..... +. .+.+.+++++||..|++.|+|.
T Consensus 79 d~v~ig~gl~~~---~~~~~i~~~~~~~--~~pvVlDa~~~~----~~~~~~-~~---~~~~~~~iltPn~~E~~~L~g~ 145 (254)
T cd01171 79 DAVVIGPGLGRD---EEAAEILEKALAK--DKPLVLDADALN----LLADEP-SL---IKRYGPVVLTPHPGEFARLLGA 145 (254)
T ss_pred CEEEEecCCCCC---HHHHHHHHHHHhc--CCCEEEEcHHHH----HhhcCh-hh---hccCCCEEECCCHHHHHHHhCC
Confidence 6788887 7653 5667788888877 889999994221 111110 00 1567899999999999999998
Q ss_pred CCCC-HHHHHHHHHHHHHcCCCeEEEeeee
Q 027620 167 RIGS-EADGREACKILHAAGPAKVVITSIN 195 (221)
Q Consensus 167 ~~~s-~~~~~~a~~~L~~~G~~~VvVT~G~ 195 (221)
++.+ .++..++++++.+++...|+ ..|.
T Consensus 146 ~~~~~~~~~~~~a~~l~~~~~~~vv-lkG~ 174 (254)
T cd01171 146 LVEEIQADRLAAAREAAAKLGATVV-LKGA 174 (254)
T ss_pred ChhhhhhHHHHHHHHHHHHcCcEEE-EcCC
Confidence 7644 33567888899888754444 5554
No 61
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.07 E-value=1.8e-09 Score=94.46 Aligned_cols=155 Identities=17% Similarity=0.194 Sum_probs=103.1
Q ss_pred ccCccchhh----cHHHHHhcCCceeeeeeEEeecCCCCCc---------ccee-eCCHHHHHHHHHHHHhcCcccccEE
Q 027620 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPT---------FKGQ-VLNGQQLCDLIEGLEANNLLYYTHL 90 (221)
Q Consensus 25 ~~G~vG~d~----~~~~l~~~gi~~~~v~~~~~~~~~~~~~---------~~G~-~l~~~~i~~~l~~i~~~~~l~~~~v 90 (221)
++|.+|.|. ..+.|...+++...+..-+++|++.... ++-+ .........+++.++..-. .++++
T Consensus 69 l~GvvG~Deag~~L~~~l~~~~i~~~l~~~~~r~T~~K~Rv~s~nQQllRvD~Ee~~~~~~~~~ll~~~~~~l~-~~~~v 147 (467)
T COG2870 69 LVGVVGKDEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVLSRNQQLLRLDFEEKFPIEDENKLLEKIKNALK-SFDAL 147 (467)
T ss_pred EEEeeccchhHHHHHHHHHhcCcccceEeecCCCceeeeeeecccceEEEecccccCcchhHHHHHHHHHHHhh-cCCEE
Confidence 689999888 4456889999955554335555443221 1211 1111344455555544311 35554
Q ss_pred EEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCC
Q 027620 91 LTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGS 170 (221)
Q Consensus 91 ~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s 170 (221)
+..-...+.-.. +..+++.+|++ +++|.+||...+ + ..+..+.+++||..|++...|....
T Consensus 148 VLSDY~KG~L~~-~q~~I~~ar~~--~~pVLvDPKg~D----f-----------~~Y~GAtLiTPN~~E~~~~vg~~~~- 208 (467)
T COG2870 148 VLSDYAKGVLTN-VQKMIDLAREA--GIPVLVDPKGKD----F-----------EKYRGATLITPNLKEFEEAVGKCKS- 208 (467)
T ss_pred EEeccccccchh-HHHHHHHHHHc--CCcEEECCCCcc----h-----------hhhCCCeecCCCHHHHHHHHccccc-
Confidence 443334444333 77899999999 999999994433 2 3688999999999999999997643
Q ss_pred HHHHHHHHHHHH-HcCCCeEEEeeeeeCCcE
Q 027620 171 EADGREACKILH-AAGPAKVVITSINIDGNL 200 (221)
Q Consensus 171 ~~~~~~a~~~L~-~~G~~~VvVT~G~~~~~~ 200 (221)
++++.+.+++|. +.+-..++||+|+ +|+-
T Consensus 209 e~el~~~g~kL~~~~~L~alLvTRsE-~GMt 238 (467)
T COG2870 209 EEELEERGQKLKEELDLSALLVTRSE-KGMT 238 (467)
T ss_pred HHHHHHHHHHHHHhhCcceEEEEecc-CCce
Confidence 467777777776 6788899999999 7763
No 62
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.02 E-value=4.2e-09 Score=89.40 Aligned_cols=152 Identities=22% Similarity=0.240 Sum_probs=95.4
Q ss_pred CccCccchhh---cHHHHHhcCCceeeeeeEEeecCC----C-CC-ccc--eeeCCHH-HHHH----HHHHHHhcCcccc
Q 027620 24 TVQGYVGNKS---AVFPLQLLGYDVDPIHSVQFSNHT----G-YP-TFK--GQVLNGQ-QLCD----LIEGLEANNLLYY 87 (221)
Q Consensus 24 ~~~G~vG~d~---~~~~l~~~gi~~~~v~~~~~~~~~----~-~~-~~~--G~~l~~~-~i~~----~l~~i~~~~~l~~ 87 (221)
..+|++|+|. .++.|+++||+++++..... ..| + +. .+. +...+.. ..+. ..+.+.. .
T Consensus 42 ~~i~~vG~D~g~~~~~~l~~~gi~~~~v~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 115 (277)
T cd01946 42 RLVGVVGEDFPEEDYKLLNSHNIVTLGLLSKED-GKTFHWAGRYHYDLNEADTLDTDLNVFADFDPQLPEHYKD-----S 115 (277)
T ss_pred eeEEeccCcChHHHHHHHHhccCcceeEEEecC-CCeEEEeeEehhhcccccchhhhhhHHhhcCCCChHHhhc-----C
Confidence 4678888775 45679999999998866421 111 1 00 011 1111100 0111 0112332 3
Q ss_pred cEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCC
Q 027620 88 THLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFR 167 (221)
Q Consensus 88 ~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~ 167 (221)
+.+.++.++ .+...++++.++++ .++++||.. ++.....+.+++ +++++|+++||+.|++.++|.
T Consensus 116 ~~v~~~~~~----~~~~~~~~~~~~~~---~~v~~D~~~------~~~~~~~~~~~~-~l~~~d~~~~n~~E~~~l~g~- 180 (277)
T cd01946 116 EFVFLGNIA----PELQREVLEQVKDP---KLVVMDTMN------FWISIKPEKLKK-VLAKVDVVIINDGEARQLTGA- 180 (277)
T ss_pred CEEEECCCC----HHHHHHHHHHHHhC---CEEEEccHH------HhhhhhHHHHHH-HhccCCEEeCCHHHHHHHhCC-
Confidence 445555554 34556677777753 579999832 122223455665 899999999999999999986
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEE
Q 027620 168 IGSEADGREACKILHAAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 168 ~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~ 201 (221)
++..++++.|.++|++.|++|+|. +|..+
T Consensus 181 ----~~~~~~~~~l~~~g~~~vvvt~G~-~G~~~ 209 (277)
T cd01946 181 ----ANLVKAARLILAMGPKALIIKRGE-YGALL 209 (277)
T ss_pred ----chHHHHHHHHHHcCCCEEEEecCC-CcEEE
Confidence 467788888999999999999999 66543
No 63
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=98.99 E-value=3.7e-09 Score=92.31 Aligned_cols=162 Identities=12% Similarity=0.051 Sum_probs=95.0
Q ss_pred CccCccchhh---cHHHHHhcCCceeeeeeE-EeecCCCCCccc--ee-----------eCCHHHHHHHHHHHHhcCccc
Q 027620 24 TVQGYVGNKS---AVFPLQLLGYDVDPIHSV-QFSNHTGYPTFK--GQ-----------VLNGQQLCDLIEGLEANNLLY 86 (221)
Q Consensus 24 ~~~G~vG~d~---~~~~l~~~gi~~~~v~~~-~~~~~~~~~~~~--G~-----------~l~~~~i~~~l~~i~~~~~l~ 86 (221)
..+|.+|+|. ..+.|+++||++++ ... ..+|...+..+. |+ .+++++++.. .+..
T Consensus 49 ~~~~~vG~D~G~~l~~~L~~~GVd~~~-~~~~~~~Tg~~~v~~~~~g~r~~~~~~~~~~~~~~~~l~~~--~~~~----- 120 (328)
T cd01943 49 SWIVDKGSDFPKSVEDELESWGTGMVF-RRDPGRLTTRGLNIYDGNDRRFFKYLTPKKRIDVSDDLNST--PLIR----- 120 (328)
T ss_pred eeEEecCCCCCHHHHHHHHhcCCceEE-EeCCCCcchhhhhhcCCCCcceeeecCcccccccccccccc--cccC-----
Confidence 3467778664 55679999999987 433 222222222111 11 2333333321 1222
Q ss_pred ccEEEEeecCChhHHHHHHHHHHHHHh------cCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHH
Q 027620 87 YTHLLTGYIGSVSFLNTILQVVEKLRS------INPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEA 160 (221)
Q Consensus 87 ~~~v~~G~l~~~~~~~~i~~~i~~ak~------~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea 160 (221)
.+.+.++..+. ...+...++++.+++ + +..+++||.+... ....++.+.+ +++++|+++||++|+
T Consensus 121 a~~~hl~~~~~-~~~~~~~~~~~~a~~~~~d~~~--g~~~~~d~~~~~~-----~~~~~~~l~~-~l~~~dil~~n~~Ea 191 (328)
T cd01943 121 SSCIHLICSPE-RCASIVDDIINLFKLLKGNSPT--RPKIVWEPLPDSC-----DPENLEDLLQ-ALPRVDVFSPNLEEA 191 (328)
T ss_pred CCeEEEECCHH-HHHHHHHHHHHHHHhhccccCC--ccEEEEecCCccc-----ChhhHHHHHH-HhccCCEECCCHHHH
Confidence 23333322211 123777888888887 5 7789999964311 1122345555 999999999999999
Q ss_pred HHhcCCCCCCHHHHHHHH--------HHHHHcCCCeEEEeeeeeCCcEEEE
Q 027620 161 EQLTGFRIGSEADGREAC--------KILHAAGPAKVVITSINIDGNLFLI 203 (221)
Q Consensus 161 ~~l~g~~~~s~~~~~~a~--------~~L~~~G~~~VvVT~G~~~~~~~~~ 203 (221)
+.|+|....+.+...+.. .++...|++.|+||+|+ +|..+..
T Consensus 192 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vvvt~G~-~Ga~~~~ 241 (328)
T cd01943 192 ARLLGLPTSEPSSDEEKEAVLQALLFSGILQDPGGGVVLRCGK-LGCYVGS 241 (328)
T ss_pred HHHhCCCCCCccchhhhhhhHHHHHHHhhhccCCCEEEEEeCC-CCCEEEe
Confidence 999997643322121111 12346789999999999 8876543
No 64
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=98.96 E-value=3.7e-09 Score=93.75 Aligned_cols=157 Identities=17% Similarity=0.103 Sum_probs=95.6
Q ss_pred ccCccchhh----cHHHHHhcCCceeeeeeEEeecCCCCCcc--ce-----------eeCCHHHHHHHHHHHHhcCcccc
Q 027620 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPTF--KG-----------QVLNGQQLCDLIEGLEANNLLYY 87 (221)
Q Consensus 25 ~~G~vG~d~----~~~~l~~~gi~~~~v~~~~~~~~~~~~~~--~G-----------~~l~~~~i~~~l~~i~~~~~l~~ 87 (221)
.+|++|+|. ..+.|+++||+++.+.....+|...+..+ +| ..++.+++.. +.++..++
T Consensus 106 ~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~~~~~Tg~~~v~v~~dgert~~~~lg~~~~l~~~~~~~--~~~~~~~~--- 180 (367)
T PLN02379 106 IIGACGDDEQGKLFVSNMGFSGVDLSRLRAKKGPTAQCVCLVDALGNRTMRPCLSSAVKLQADELTK--EDFKGSKW--- 180 (367)
T ss_pred EEEEeCCChhHHHHHHHHHHcCCCccCcccCCCCCceEEEEECCCCCccccCCccccccCChhHCCH--HHHhcCCE---
Confidence 688999887 55679999999877643321222111111 12 1233333332 23444443
Q ss_pred cEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcC--CCceEEecCHHHHHHhcC
Q 027620 88 THLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVV--PVASMLTPNQFEAEQLTG 165 (221)
Q Consensus 88 ~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll--~~~dvi~pN~~Ea~~l~g 165 (221)
+.+.+.. .+.+.+.++++.+|++ +++|++|++... .....++.+.+ ++ .++|++++|++|+..+++
T Consensus 181 --v~v~~~~--~~~~~~~~~~~~A~~~--g~~v~lD~s~~~-----~v~~~r~~l~~-ll~~~~vDilf~Ne~Ea~~l~~ 248 (367)
T PLN02379 181 --LVLRYGF--YNLEVIEAAIRLAKQE--GLSVSLDLASFE-----MVRNFRSPLLQ-LLESGKIDLCFANEDEARELLR 248 (367)
T ss_pred --EEEEccc--CCHHHHHHHHHHHHHc--CCEEEEeccchh-----hhhhhhHHHHH-HhhcCCccEEEcCHHHHHHHhc
Confidence 4444422 2357888899999988 999999995311 11122233443 55 489999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEEE
Q 027620 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFL 202 (221)
Q Consensus 166 ~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~~ 202 (221)
.... ++.+++.+ +++.+++.++||+|+ +|..++
T Consensus 249 ~~~~--~~~~~~~~-~l~~~~~~vvvT~G~-~Ga~~~ 281 (367)
T PLN02379 249 GEQE--SDPEAALE-FLAKYCNWAVVTLGS-KGCIAR 281 (367)
T ss_pred CCCC--CCHHHHHH-HHHhcCCEEEEEECC-CCeEEE
Confidence 4311 23444443 455679999999999 786653
No 65
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=98.93 E-value=6.1e-09 Score=87.56 Aligned_cols=147 Identities=17% Similarity=0.147 Sum_probs=92.1
Q ss_pred ccCccchhh----cHHHHHhcCCceeeeeeEEeecCCCCCcc-c----------eeeCCHHHHHHHHHHHHhcCcccccE
Q 027620 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPTF-K----------GQVLNGQQLCDLIEGLEANNLLYYTH 89 (221)
Q Consensus 25 ~~G~vG~d~----~~~~l~~~gi~~~~v~~~~~~~~~~~~~~-~----------G~~l~~~~i~~~l~~i~~~~~l~~~~ 89 (221)
.+|.+|+|. ..+.|++.||+++.+.....+|...+... . |...+....+...+.++..+ .
T Consensus 41 ~~~~vG~D~~g~~i~~~l~~~gI~~~~v~~~~~~t~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 115 (264)
T cd01940 41 YIGAVGNDDAGAHVRSTLKRLGVDISHCRVKEGENAVADVELVDGDRIFGLSNKGGVAREHPFEADLEYLSQFD-----L 115 (264)
T ss_pred EEecccCchhHHHHHHHHHHcCCChhheEEcCCCCceEEEEecCCceEEEeecCCcHHhcccCcccHhHHhcCC-----E
Confidence 588899876 45679999999988865432222111111 1 11111000011223344333 3
Q ss_pred EEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCC
Q 027620 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIG 169 (221)
Q Consensus 90 v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~ 169 (221)
+.++..+. .+.+.++++.++++ +.+|++||+.+. ..+ .+.+ +++++|++.+|++|..
T Consensus 116 v~~~~~~~---~~~~~~~~~~a~~~--g~~v~~D~~~~~------~~~---~~~~-~~~~~d~~~~~~~~~~-------- 172 (264)
T cd01940 116 VHTGIYSH---EGHLEKALQALVGA--GALISFDFSDRW------DDD---YLQL-VCPYVDFAFFSASDLS-------- 172 (264)
T ss_pred EEEccccc---HHHHHHHHHHHHHc--CCEEEEcCcccC------CHH---HHHh-hcccCCEEEechhhcC--------
Confidence 44444332 45677889999988 999999996531 111 2333 7899999999987752
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEE
Q 027620 170 SEADGREACKILHAAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 170 s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~ 201 (221)
.++..++++.++++|++.|+||+|+ +|..+
T Consensus 173 -~~~~~~~~~~l~~~~~~~vvvT~G~-~G~~~ 202 (264)
T cd01940 173 -DEEVKAKLKEAVSRGAKLVIVTRGE-DGAIA 202 (264)
T ss_pred -cchHHHHHHHHHHcCCCEEEEEECC-CCeEE
Confidence 1356667888889999999999999 88654
No 66
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=98.84 E-value=1.8e-08 Score=85.48 Aligned_cols=145 Identities=20% Similarity=0.157 Sum_probs=92.0
Q ss_pred ccCccchhh----cHHHHHhcCCceeeeeeEEeecCCCCC---ccc-----------eeeCCHHHHHHHHHHHHhcCccc
Q 027620 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYP---TFK-----------GQVLNGQQLCDLIEGLEANNLLY 86 (221)
Q Consensus 25 ~~G~vG~d~----~~~~l~~~gi~~~~v~~~~~~~~~~~~---~~~-----------G~~l~~~~i~~~l~~i~~~~~l~ 86 (221)
.+|.+|+|. .++.|+++||+++++..... ..+++. ... +..++.++++.. .++..
T Consensus 55 ~~~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---- 127 (284)
T cd01945 55 LIGVVGDDAIGRLILAELAAEGVDTSFIVVAPG-ARSPISSITDITGDRATISITAIDTQAAPDSLPDA--ILGGA---- 127 (284)
T ss_pred EEEEecCchHHHHHHHHHHHcCCCccceeecCC-CCCccEEEEccCCCceEEEecCCCCCCCcccCCHH--HhCcC----
Confidence 578888886 45679999999998875421 112211 011 123333444332 23433
Q ss_pred ccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCC
Q 027620 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF 166 (221)
Q Consensus 87 ~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~ 166 (221)
+.+.++... .+...++++.++++ +.++++|..+... .+ +.+ +++++|+++||++|++.+++.
T Consensus 128 -~~v~i~~~~----~~~~~~~~~~~~~~--g~~v~~~~~~~~~------~~----~~~-~~~~~dil~~n~~e~~~l~~~ 189 (284)
T cd01945 128 -DAVLVDGRQ----PEAALHLAQEARAR--GIPIPLDLDGGGL------RV----LEE-LLPLADHAICSENFLRPNTGS 189 (284)
T ss_pred -CEEEEcCCC----HHHHHHHHHHHHHc--CCCeeEeccCCcc------cc----hHH-HhccCCEEEeChhHHhhhcCC
Confidence 334333221 24566788888887 8777776643321 11 233 888999999999999999886
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEE
Q 027620 167 RIGSEADGREACKILHAAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 167 ~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~ 201 (221)
. +. ++++.+.+.|++.|+||+|+ +|..+
T Consensus 190 ~-----~~-~~~~~l~~~~~~~vivt~G~-~G~~~ 217 (284)
T cd01945 190 A-----DD-EALELLASLGIPFVAVTLGE-AGCLW 217 (284)
T ss_pred C-----HH-HHHHHHHhcCCcEEEEEECC-CCeEE
Confidence 3 11 66777888999999999999 67543
No 67
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=98.80 E-value=1.4e-08 Score=87.51 Aligned_cols=162 Identities=16% Similarity=0.107 Sum_probs=100.8
Q ss_pred CccCccchhh----cHHHHHhcCCceeeeeeEEeecCCCCCcc----ce---------e--eCCHHHHHHHHHHHHhcCc
Q 027620 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPTF----KG---------Q--VLNGQQLCDLIEGLEANNL 84 (221)
Q Consensus 24 ~~~G~vG~d~----~~~~l~~~gi~~~~v~~~~~~~~~~~~~~----~G---------~--~l~~~~i~~~l~~i~~~~~ 84 (221)
.++|+||+|. .+..|+++||+++++..+. .++|++..+ +| + ..+++..+...+.++.+.+
T Consensus 64 afiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~-~~~T~~a~i~v~~dG~~~~~~v~gan~~~~~~~se~~~~~i~~ak~ 142 (330)
T KOG2855|consen 64 AFIGKVGDDEFGDDLLDILKQNGVDTSGVKFDE-NARTACATITVSKDGENRIIFVRGANADMLPEDSELNLEVIKEAKV 142 (330)
T ss_pred eeeecccchhhHHHHHHHHhhCCcccccceecC-CCceEEEEEEEccCCceEEEEEecCchhcCcccccccHHHHhhccE
Confidence 4799999998 6678999999999998763 134433221 12 1 3333445555667777776
Q ss_pred ccccEEEEeecCChhH-HHHHHHHHHHHHhcCCCCeEEEcccccCCCCCC-CchhHHHHHHHhcCCCceEEecCHHHHHH
Q 027620 85 LYYTHLLTGYIGSVSF-LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLY-VPSELVSVYREKVVPVASMLTPNQFEAEQ 162 (221)
Q Consensus 85 l~~~~v~~G~l~~~~~-~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~-~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~ 162 (221)
+++. +-.+.+.+ .......++.+++. +.-+.+||+++.. +| ........+.. ++..+|+++..+.|++.
T Consensus 143 ~~~q----~ei~~~~~~~s~~~~~~~~~~~~--g~~i~~~pn~~l~--l~~~~~~ne~e~~~-i~~~adv~~~s~~e~~f 213 (330)
T KOG2855|consen 143 FHCQ----SEILIEEPMRSLHIAAVKVAKNA--GPAIFYDPNLRLP--LWDSLEENESEIAS-IWNMADVIKVSSQELAF 213 (330)
T ss_pred EEEe----eecCCcchhHHHHHhhhhhhhcc--cccccCCCCcccc--ccccccccHHHHHH-HhhhhhcccccHHHHHH
Confidence 5443 22222222 22222235566654 6667779987632 22 11222233444 88899999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEEEE
Q 027620 163 LTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLI 203 (221)
Q Consensus 163 l~g~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~~~ 203 (221)
++|.. .++. .+|...+.+.|+||+|+ +|+.|+.
T Consensus 214 l~~~~---~~~~----~~L~~~~~k~viVTlG~-kG~~y~t 246 (330)
T KOG2855|consen 214 LTGIE---DDKI----LKLWHMKLKLVIVTLGE-KGCRYYT 246 (330)
T ss_pred hccCc---cchH----HHHhccCCCEEEEEeCC-CceEEEe
Confidence 98872 1223 26777777999999999 8876544
No 68
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=98.78 E-value=1.2e-07 Score=79.57 Aligned_cols=97 Identities=23% Similarity=0.192 Sum_probs=68.0
Q ss_pred EEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCC--CceEEecCHHHHHHhcCCC
Q 027620 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVP--VASMLTPNQFEAEQLTGFR 167 (221)
Q Consensus 90 v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~--~~dvi~pN~~Ea~~l~g~~ 167 (221)
+..|++. +...+.+.++++.+++. +.++++||..... . ....+.+.+ ++. .+|+++||..|++.|+|.+
T Consensus 55 i~~G~l~-~~~~~~i~~~~~~~~~~--~~pvVlDp~~~~~----~-~~~~~~~~~-ll~~~~~~ilTPN~~Ea~~L~g~~ 125 (242)
T cd01170 55 INIGTLT-SEQIEAMLKAGKAANQL--GKPVVLDPVGVGA----T-SFRTEVAKE-LLAEGQPTVIRGNASEIAALAGLT 125 (242)
T ss_pred EeCCCCC-hHHHHHHHHHHHHHHhc--CCCEEEcccccCc----c-hhHHHHHHH-HHhcCCCeEEcCCHHHHHHHhCCC
Confidence 4556653 45567777777788887 8899999975422 1 111122333 444 4999999999999999976
Q ss_pred CCC---------HHHHHHHHHHHHHcCCCeEEEeeee
Q 027620 168 IGS---------EADGREACKILHAAGPAKVVITSIN 195 (221)
Q Consensus 168 ~~s---------~~~~~~a~~~L~~~G~~~VvVT~G~ 195 (221)
..+ .+++.+++++|.+++...|++|++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~aa~~l~~~~~~~VllkG~~ 162 (242)
T cd01170 126 GLGKGVDSSSSDEEDALELAKALARKYGAVVVVTGEV 162 (242)
T ss_pred CCcCcccCCCcchHHHHHHHHHHHHHhCCEEEEECCC
Confidence 532 5778889999987766679999654
No 69
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=98.76 E-value=8.8e-08 Score=80.65 Aligned_cols=97 Identities=16% Similarity=0.084 Sum_probs=69.5
Q ss_pred EEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccC-CCCCCCchhHHHHHHHhcCC--CceEEecCHHHHHHhcC
Q 027620 89 HLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD-EGKLYVPSELVSVYREKVVP--VASMLTPNQFEAEQLTG 165 (221)
Q Consensus 89 ~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~-~g~~~~~~~~~~~l~~~ll~--~~dvi~pN~~Ea~~l~g 165 (221)
++.+|++.+ ...+.+..+++.++++ +.|+|+||+... .+. ..+..+ .+++ ++++|+||..|++.|+|
T Consensus 54 ~ik~G~l~~-~~~~~i~~~~~~~~~~--~~pvVlDPV~~~~s~~------r~~~~~-~Ll~~~~~~vITpN~~E~~~L~g 123 (249)
T TIGR00694 54 VINIGTLDK-ESIEAMIAAGKSANEL--GVPVVLDPVGVGATKF------RTETAL-ELLSEGRFAAIRGNAGEIASLAG 123 (249)
T ss_pred EEeCCCCCH-HHHHHHHHHHHHHHhc--CCCEEEcccccccchh------HHHHHH-HHHhhcCCceeCCCHHHHHHHhC
Confidence 589999854 5578888888888877 789999998753 221 112222 2565 47999999999999998
Q ss_pred CCC--------CCHHHHHHHHHHHHHcCCCeEEEeeee
Q 027620 166 FRI--------GSEADGREACKILHAAGPAKVVITSIN 195 (221)
Q Consensus 166 ~~~--------~s~~~~~~a~~~L~~~G~~~VvVT~G~ 195 (221)
... .+.++..+++++|.+++...|++|++.
T Consensus 124 ~~~~~~gvd~~~~~~d~~~~a~~la~~~~~~VllkG~~ 161 (249)
T TIGR00694 124 ETGLMKGVDSGEGAADAIRAAQQAAQKYGTVVVITGEV 161 (249)
T ss_pred CCCCCCCcCCccchHHHHHHHHHHHHHhCCEEEEECCC
Confidence 541 135677888999887754578887764
No 70
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=98.70 E-value=4.3e-08 Score=82.91 Aligned_cols=142 Identities=18% Similarity=0.186 Sum_probs=84.3
Q ss_pred ccCccchhh----cHHHHHhcCCceeeeeeEE-eecCCCCCcc-----------cee--eCCHHHHHHHHHHHHhcCccc
Q 027620 25 VQGYVGNKS----AVFPLQLLGYDVDPIHSVQ-FSNHTGYPTF-----------KGQ--VLNGQQLCDLIEGLEANNLLY 86 (221)
Q Consensus 25 ~~G~vG~d~----~~~~l~~~gi~~~~v~~~~-~~~~~~~~~~-----------~G~--~l~~~~i~~~l~~i~~~~~l~ 86 (221)
.+|.+|+|. ..+.|+++||+++++.... ..+...+..+ .|. .+++++ ..+.++..+
T Consensus 55 ~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--- 128 (279)
T cd01942 55 LVAAVGEDFHGRLYLEELREEGVDTSHVRVVDEDSTGVAFILTDGDDNQIAYFYPGAMDELEPND---EADPDGLAD--- 128 (279)
T ss_pred EEEEecCCcchHHHHHHHHHcCCCccceEEcCCCCcceEEEEEcCCCCEEEEecCCcccccccCC---chhhhcccC---
Confidence 588888887 4567999999999885432 1122111111 111 222222 112333333
Q ss_pred ccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHH---HHh
Q 027620 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEA---EQL 163 (221)
Q Consensus 87 ~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea---~~l 163 (221)
.+.++..+ .+.++++.++++ +.++++||+.+.. . +.. +.+++ +++++|+++||++|+ +.+
T Consensus 129 --~~~~~~~~------~~~~~~~~~~~~--g~~v~~D~~~~~~--~-~~~---~~~~~-~l~~~dil~~n~~E~~~l~~~ 191 (279)
T cd01942 129 --IVHLSSGP------GLIELARELAAG--GITVSFDPGQELP--R-LSG---EELEE-ILERADILFVNDYEAELLKER 191 (279)
T ss_pred --EEEeCCch------HHHHHHHHHHHc--CCeEEEcchhhhh--h-ccH---HHHHH-HHhhCCEEecCHHHHHHHHhh
Confidence 33333211 355677778777 8999999975421 1 111 33444 889999999999999 556
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEE
Q 027620 164 TGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 164 ~g~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~ 201 (221)
++.+ +.. ..+|++.|++|+|+ +|..+
T Consensus 192 ~~~~-----~~~------~~~~~~~vvvt~G~-~G~~~ 217 (279)
T cd01942 192 TGLS-----EAE------LASGVRVVVVTLGP-KGAIV 217 (279)
T ss_pred cCCC-----hHH------HhcCCCEEEEEECC-CceEE
Confidence 6642 111 12789999999999 77644
No 71
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=98.61 E-value=3.6e-07 Score=77.99 Aligned_cols=148 Identities=12% Similarity=0.075 Sum_probs=86.9
Q ss_pred CccCccchhh----cHHHHHhcCCceeeeeeEEeecCCC-CC-----------ccc--eeeCCHHHHHHHHHHHHhcCcc
Q 027620 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTG-YP-----------TFK--GQVLNGQQLCDLIEGLEANNLL 85 (221)
Q Consensus 24 ~~~G~vG~d~----~~~~l~~~gi~~~~v~~~~~~~~~~-~~-----------~~~--G~~l~~~~i~~~l~~i~~~~~l 85 (221)
..+|.+|+|. .++.|+++||+++++......+++. +. ... ...++.++++.. .++..++
T Consensus 54 ~~~~~vG~D~~g~~~~~~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~- 130 (290)
T cd01939 54 EFLGVLSRGPVFESLLDDFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTTIVNDNNLPEVTYDDFSKI--DLTQYGW- 130 (290)
T ss_pred EEEEeecCCHHHHHHHHHHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEEEEeCCCCCCCCHHHHhhh--hhccCCE-
Confidence 3588899887 5567999999998875432112211 11 111 235566666543 2233332
Q ss_pred cccEEEEeecCChhHHHHHHHHHHHHHhcCCC-------CeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHH
Q 027620 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPN-------LIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQF 158 (221)
Q Consensus 86 ~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~-------~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~ 158 (221)
..+.|+.| +...++++.++++ + .++++|+.... +.+++ +++++|++++|++
T Consensus 131 ---~~~~g~~~-----~~~~~~~~~~~~~--~~~~~~~~~~v~~d~~~~~-----------~~~~~-~l~~~di~~~n~~ 188 (290)
T cd01939 131 ---IHFEGRNP-----DETLRMMQHIEEH--NNRRPEIRITISVEVEKPR-----------EELLE-LAAYCDVVFVSKD 188 (290)
T ss_pred ---EEEeccCH-----HHHHHHHHHHHHh--cCcCCCcceEEEEEeccCc-----------hhhhh-HHhhCCEEEEEhH
Confidence 23445543 2344566666665 3 57889984321 11233 8889999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEE
Q 027620 159 EAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 159 Ea~~l~g~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~ 201 (221)
|++.+ +. .+.++... ...+...|++.|+||+|+ +|..+
T Consensus 189 ~~~~~-~~--~~~~~~~~-~~~~~~~~~~~vvvt~G~-~G~~~ 226 (290)
T cd01939 189 WAQSR-GY--KSPEECLR-GEGPRAKKAALLVCTWGD-QGAGA 226 (290)
T ss_pred HHHhc-Cc--CCHHHHHH-hhhhhccCCcEEEEEccc-CCeEE
Confidence 98864 54 23333221 122335688999999999 77544
No 72
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=98.59 E-value=5.5e-07 Score=76.43 Aligned_cols=100 Identities=18% Similarity=0.080 Sum_probs=68.4
Q ss_pred EEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCC
Q 027620 89 HLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRI 168 (221)
Q Consensus 89 ~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~ 168 (221)
++..|++. +...+.+..+++.++++ +.|+|+||+..... . ...+..+.+.+ . .++++++||..|+..|+|.+.
T Consensus 59 vi~~G~l~-~~~~~~i~~~~~~a~~~--~~pvVlDpv~~~~~-~-~~~~~~~~ll~-~-~~~~vItPN~~E~~~L~g~~~ 131 (263)
T PRK09355 59 VINIGTLT-EERIEAMLAAGKIANEA--GKPVVLDPVGVGAT-S-YRTEFALELLA-E-VKPAVIRGNASEIAALAGEAA 131 (263)
T ss_pred EEeCCCCC-HHHHHHHHHHHHHHHhc--CCCEEECCcccCcc-h-hhHHHHHHHHH-h-cCCcEecCCHHHHHHHhCCCc
Confidence 46778874 45566677777778887 88999999764210 0 11222233322 1 368999999999999998642
Q ss_pred --------CCHHHHHHHHHHHHHcCCCeEEEeeee
Q 027620 169 --------GSEADGREACKILHAAGPAKVVITSIN 195 (221)
Q Consensus 169 --------~s~~~~~~a~~~L~~~G~~~VvVT~G~ 195 (221)
.+.++..+++++|.+++...|++|++.
T Consensus 132 ~~~~vd~~~~~~~~~~~a~~la~~~~~~VvvkG~~ 166 (263)
T PRK09355 132 ETKGVDSTDGSADAVEIAKAAAKKYGTVVVVTGEV 166 (263)
T ss_pred ccCCcCCCCCHHHHHHHHHHHHHHhCCEEEEECCC
Confidence 134578888999987766678888665
No 73
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=98.50 E-value=2e-06 Score=72.38 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=86.7
Q ss_pred CccCccchhh----cHHHHHhcCCceeeeeeEEeecCCCCCcc-c----------e----eeCCHHHHHHHHHHHHhcCc
Q 027620 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPTF-K----------G----QVLNGQQLCDLIEGLEANNL 84 (221)
Q Consensus 24 ~~~G~vG~d~----~~~~l~~~gi~~~~v~~~~~~~~~~~~~~-~----------G----~~l~~~~i~~~l~~i~~~~~ 84 (221)
..+|.+|+|. +++.|+++||+++++......++..+..+ . | ..+++.++ +.+...+
T Consensus 41 ~~is~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~t~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~----~~l~~~~- 115 (260)
T PRK09813 41 GCITWVGDDDYGTKLKQDLARMGVDISHVHTKHGVTAQTQVELHDNDRVFGDYTEGVMADFALSEEDY----AWLAQYD- 115 (260)
T ss_pred eEEEEecCcHHHHHHHHHHHHcCCcchheeeecCCCceEEEEEeCCcEEeeccCCCcccccccCHHHH----HHHHhCC-
Confidence 3688899886 45679999999988865432221111111 0 1 12222222 2344443
Q ss_pred ccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhc
Q 027620 85 LYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (221)
Q Consensus 85 l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~ 164 (221)
.+..+... ...++++.++++ +.++++||+.+. ..+ .+.+ +++++|++++|+.+
T Consensus 116 ----~v~~~~~~------~~~~~~~~~~~~--~~~v~~D~~~~~------~~~---~~~~-~~~~~d~~~~~~~~----- 168 (260)
T PRK09813 116 ----IVHAAIWG------HAEDAFPQLHAA--GKLTAFDFSDKW------DSP---LWQT-LVPHLDYAFASAPQ----- 168 (260)
T ss_pred ----EEEEeccc------hHHHHHHHHHHc--CCeEEEEcCCCc------cHH---HHHH-hCCceeEEEecCCc-----
Confidence 34433211 123566777777 899999996431 111 1233 88999999988653
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEEE
Q 027620 165 GFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFL 202 (221)
Q Consensus 165 g~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~~ 202 (221)
..+++.++++++.++|++.|+||+|+ +|..+.
T Consensus 169 -----~~~~~~~~~~~~~~~g~~~viit~G~-~Ga~~~ 200 (260)
T PRK09813 169 -----EDEFLRLKMKAIVARGAGVVIVTLGE-NGSIAW 200 (260)
T ss_pred -----chHHHHHHHHHHHHcCCCEEEEEECC-CceEEE
Confidence 12456778888889999999999998 786654
No 74
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=98.45 E-value=2.8e-07 Score=77.52 Aligned_cols=72 Identities=11% Similarity=0.173 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCCHHHHHHHHHHHHHc
Q 027620 105 LQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAA 184 (221)
Q Consensus 105 ~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s~~~~~~a~~~L~~~ 184 (221)
.++++.++++ + .+++|+..+.. . +.+++ +++++|++++|++|+..+++ ++.+.+.
T Consensus 134 ~~~~~~a~~~--~-~~~~d~~~~~~----~-----~~~~~-~~~~~d~~~~n~~e~~~l~~------------~~~~~~~ 188 (265)
T cd01947 134 KEAIRKCRET--K-LVILQVTPRVR----V-----DELNQ-ALIPLDILIGSRLDPGELVV------------AEKIAGP 188 (265)
T ss_pred HHHHHHHHHh--C-CeEeccCcccc----c-----hhHHH-HhhhCCEEEeCHHHHHHhhh------------HHHHHhc
Confidence 3556777765 4 57889864421 1 12333 88999999999999998764 4556788
Q ss_pred CCCeEEEeeeeeCCcEEE
Q 027620 185 GPAKVVITSINIDGNLFL 202 (221)
Q Consensus 185 G~~~VvVT~G~~~~~~~~ 202 (221)
|++.|+||+|+ +|..+.
T Consensus 189 ~~~~viit~G~-~Ga~~~ 205 (265)
T cd01947 189 FPRYLIVTEGE-LGAILY 205 (265)
T ss_pred cCCEEEEEeCC-CCeEEE
Confidence 99999999999 886553
No 75
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=98.00 E-value=3.2e-05 Score=66.62 Aligned_cols=158 Identities=18% Similarity=0.178 Sum_probs=92.7
Q ss_pred CccCccchhh----cHHHHHhcCCceeeeeeEEeecCCCCCccc----------e--eeCCHHHHHH--HHHHHHhcCcc
Q 027620 24 TVQGYVGNKS----AVFPLQLLGYDVDPIHSVQFSNHTGYPTFK----------G--QVLNGQQLCD--LIEGLEANNLL 85 (221)
Q Consensus 24 ~~~G~vG~d~----~~~~l~~~gi~~~~v~~~~~~~~~~~~~~~----------G--~~l~~~~i~~--~l~~i~~~~~l 85 (221)
...|.+|.|. ..+.+++.|++..+-..-+.+|.+=...+. | ..++.++++. .+..+....++
T Consensus 84 ~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~TGtCavli~~~nRSL~anLgAAn~f~~dhl~~~~~~~lveka~v~ 163 (343)
T KOG2854|consen 84 VFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDGPTGTCAVLITGDNRSLCANLGAANCFKVDHLDKEENWALVEKAKVF 163 (343)
T ss_pred EEEeeccCchHHHHHHHHHHhcCceEEEEeccCCCCceEEEEEeCCCcchhhccchhhccCHHHhcchhhhhhhhheeEE
Confidence 3578899888 445699999998766543322221011111 1 2445555533 23344555554
Q ss_pred cccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcC
Q 027620 86 YYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (221)
Q Consensus 86 ~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g 165 (221)
. +.|++- ....+++..+.+++.++ +.+.+++-+. .++.+-..+.+.+ +++++|+++-|++||+.+..
T Consensus 164 y----v~Gffl-tv~p~ai~~v~qh~~e~--~r~~~lnlsa-----pfI~q~~~~~l~~-v~~y~DiifgNe~EA~af~~ 230 (343)
T KOG2854|consen 164 Y----VAGFFL-TVSPDAIRKVAQHAAEN--NRVFTLNLSA-----PFISQFFKDALDK-VLPYADIIFGNEDEAAAFAR 230 (343)
T ss_pred E----EEEEEE-EeChHHHHHHHHHHHHh--cchhheeccc-----hhHHHHHHHHHHh-hcCcceEEEcCHHHHHHHHH
Confidence 3 344442 34467888888888887 5556666421 2345555666766 99999999999999999864
Q ss_pred CC-CCCHHHHHHHHH---HHHH---cCCCeEEEeeee
Q 027620 166 FR-IGSEADGREACK---ILHA---AGPAKVVITSIN 195 (221)
Q Consensus 166 ~~-~~s~~~~~~a~~---~L~~---~G~~~VvVT~G~ 195 (221)
.. ..| .++.+.+. .+-+ .-++.++||.|.
T Consensus 231 ~~~~~t-~dv~eia~~~~~~~k~~~~~~r~vvit~g~ 266 (343)
T KOG2854|consen 231 AHGWET-KDVKEIALKLSALPKVNGTRPRTVVITQGP 266 (343)
T ss_pred hhCCcc-cchHHHhhHhhccccccccccceEEEccCC
Confidence 32 222 12222222 2222 235788999998
No 76
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=97.91 E-value=4.2e-05 Score=63.89 Aligned_cols=69 Identities=13% Similarity=0.174 Sum_probs=48.7
Q ss_pred CeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeeC
Q 027620 118 LIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINID 197 (221)
Q Consensus 118 ~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~ 197 (221)
.+|++||+.... .+...+ ..+. .+++++|+++||+.|++.+ .+.+++++.+.++|++.|+||+|+ .
T Consensus 129 ~~v~~D~~~~~~--~~~~~~--~~~~-~~l~~~di~~~n~~E~~~~--------~~~~~~~~~l~~~g~~~vvvt~g~-~ 194 (254)
T cd01937 129 AFISLDAQGFLR--RANQEK--LIKC-VILKLHDVLKLSRVEAEVI--------STPTELARLIKETGVKEIIVTDGE-E 194 (254)
T ss_pred hheeEcccccee--eccccc--hHHH-hhcccCcEEEEcHHHHhhc--------CCHHHHHHHHHHcCCCEEEEeeCC-c
Confidence 579999964311 011111 1123 4899999999999999983 245667788889999999999998 5
Q ss_pred CcE
Q 027620 198 GNL 200 (221)
Q Consensus 198 ~~~ 200 (221)
|..
T Consensus 195 g~~ 197 (254)
T cd01937 195 GGY 197 (254)
T ss_pred ceE
Confidence 654
No 77
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=97.42 E-value=0.0049 Score=51.76 Aligned_cols=106 Identities=18% Similarity=0.215 Sum_probs=71.6
Q ss_pred EEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCC--CceEEecCHHHHHHhcCCC
Q 027620 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVP--VASMLTPNQFEAEQLTGFR 167 (221)
Q Consensus 90 v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~--~~dvi~pN~~Ea~~l~g~~ 167 (221)
+-+|.|. ....+.+..+++.+++. +.|++|||+-... .+++..+-.+++. ++++|+-|..|...|.|..
T Consensus 61 INIGTL~-~~~~~~m~~A~~~An~~--~~PvvLDPVgvgA------t~~R~~~~~~LL~~~~~~~IrGN~sEI~~Lag~~ 131 (265)
T COG2145 61 INIGTLS-AERIQAMRAAIKAANES--GKPVVLDPVGVGA------TKFRTKFALELLAEVKPAAIRGNASEIAALAGEA 131 (265)
T ss_pred EeeccCC-hHHHHHHHHHHHHHHhc--CCCEEecCccCCc------hHHHHHHHHHHHHhcCCcEEeccHHHHHHHhccc
Confidence 5678874 66688889999999998 9999999975321 2222222223555 4899999999999998654
Q ss_pred C-----C---CHHHHHHHHHHHHH-cCCCeEEEeeeeeC----CcEEEEEee
Q 027620 168 I-----G---SEADGREACKILHA-AGPAKVVITSINID----GNLFLIGSH 206 (221)
Q Consensus 168 ~-----~---s~~~~~~a~~~L~~-~G~~~VvVT~G~~~----~~~~~~~~~ 206 (221)
- + ..+++.++++.+.+ .+ .|++-.|+.| |....+.++
T Consensus 132 ~~~kGVDa~~~~~~~~~~a~~~A~~~~--~vvvvTG~vD~Isdg~~~~~i~n 181 (265)
T COG2145 132 GGGKGVDAGDGAADAIEAAKKAAQKYG--TVVVVTGEVDYISDGTRVVVIHN 181 (265)
T ss_pred ccccccccccchhhHHHHHHHHHHHhC--cEEEEECCeeEEEcCCeEEEEEC
Confidence 2 2 34567777777654 45 3555566655 666666663
No 78
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=97.24 E-value=0.0026 Score=53.45 Aligned_cols=98 Identities=19% Similarity=0.222 Sum_probs=60.6
Q ss_pred EEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcC--CCceEEecCHHHHHHhcCCC
Q 027620 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVV--PVASMLTPNQFEAEQLTGFR 167 (221)
Q Consensus 90 v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll--~~~dvi~pN~~Ea~~l~g~~ 167 (221)
+-+|.+ ++...+.+..+.+.++++ ++|+||||+-.-. .+.+..+-.+++ .++++|+-|..|...|.|..
T Consensus 55 iNiGTl-~~~~~~~m~~A~~~A~~~--~~PvVLDPVgvGa------s~~R~~~~~~LL~~~~~~vIrGN~sEI~aLag~~ 125 (246)
T PF02110_consen 55 INIGTL-TDERIEAMKKAAKAANEL--GIPVVLDPVGVGA------SKFRTEFALELLNNYKPTVIRGNASEIAALAGED 125 (246)
T ss_dssp EESTTS-SHHHHHHHHHHHHHHHHT--T--EEEE-TTBTT------BHHHHHHHHHHHCHS--SEEEEEHHHHHHHHTCC
T ss_pred EECCCC-CHhHHHHHHHHHHHHHHc--CCCEEEeCcccCC------cHHHHHHHHHHHHhCCCcEEEeCHHHHHHHhCcC
Confidence 445654 456678889999999998 9999999964321 122222223366 48999999999999998865
Q ss_pred CC--------CHHHHHHHHHHHHHcCCCeEEEeeeeeC
Q 027620 168 IG--------SEADGREACKILHAAGPAKVVITSINID 197 (221)
Q Consensus 168 ~~--------s~~~~~~a~~~L~~~G~~~VvVT~G~~~ 197 (221)
.. +.++..++++++.++-- .+++-.|+.|
T Consensus 126 ~~~kGVDs~~~~~~~~~~a~~lA~k~~-~vVvvTG~~D 162 (246)
T PF02110_consen 126 SKAKGVDSGDSDEDAIEAAKQLAQKYN-CVVVVTGEVD 162 (246)
T ss_dssp CCSCSSSSSCGSHHHHHHHHHHHHHTT-SEEEEESSSE
T ss_pred CCCCCcCcCCcchHHHHHHHHHHHhcC-CEEEEecCCc
Confidence 31 12335677888875432 3555566644
No 79
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=97.02 E-value=0.0027 Score=55.84 Aligned_cols=79 Identities=25% Similarity=0.276 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHh-----cCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCCHHHHH
Q 027620 101 LNTILQVVEKLRS-----INPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGR 175 (221)
Q Consensus 101 ~~~i~~~i~~ak~-----~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s~~~~~ 175 (221)
.+...++++.++. + +..++|||.+... . ++..+ .+.+.+ +++++|+++||++|+..+ +.++
T Consensus 134 ~e~~~~~~~~a~~v~~D~~--g~~~~~Dp~~~~~-~-~~~~~-~~~~~~-~L~~iDil~~ne~Ea~~l------~~~~-- 199 (335)
T PLN02630 134 PETLERMVEICDVVVVDIQ--ALIRVFDPVDGTV-K-LVKLE-ETGFYD-MLPRIGFLKASSEEALFI------DVEE-- 199 (335)
T ss_pred HHHHHHHHHHhhhheeccC--ceEEecCCccccc-c-cchhh-HHHHHH-HHHhCCEEEecHHHHhhc------CHHH--
Confidence 4667778888876 6 7889999976311 0 11111 012333 889999999999999876 1122
Q ss_pred HHHHHHHHcCCCeEEEeeeeeCCcEE
Q 027620 176 EACKILHAAGPAKVVITSINIDGNLF 201 (221)
Q Consensus 176 ~a~~~L~~~G~~~VvVT~G~~~~~~~ 201 (221)
+. +. ..|+||+|+ +|..+
T Consensus 200 -~~----~~--~~vvvt~G~-~G~~~ 217 (335)
T PLN02630 200 -VR----QK--CCVIVTNGK-KGCRI 217 (335)
T ss_pred -Hc----cC--CEEEEEECC-CceEE
Confidence 11 22 379999999 87654
No 80
>PRK10565 putative carbohydrate kinase; Provisional
Probab=96.05 E-value=0.037 Score=51.40 Aligned_cols=77 Identities=16% Similarity=0.146 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCCHH-HHHHHHHHHHH
Q 027620 105 LQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEA-DGREACKILHA 183 (221)
Q Consensus 105 ~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s~~-~~~~a~~~L~~ 183 (221)
.++++.+++. +.|+|+|| .+..++... . ......+++||..|++.|++......+ +..++++.+.+
T Consensus 337 ~~~~~~~~~~--~~P~VLDA----daL~ll~~~-----~--~~~~~~VLTPh~gE~~rL~~~~~~~v~~~~~~~a~~~a~ 403 (508)
T PRK10565 337 KKALQKVENF--RKPMLWDA----DALNLLAIN-----P--DKRHNRVITPHPGEAARLLGCSVAEIESDRLLSARRLVK 403 (508)
T ss_pred HHHHHHHHhc--CCCEEEEc----hHHHHHhhC-----c--cccCCeEECCCHHHHHHHhCCChhhhhhhHHHHHHHHHH
Confidence 4455666666 78999999 321111100 0 011257999999999999986543222 44456777765
Q ss_pred cCCCeEEEeee
Q 027620 184 AGPAKVVITSI 194 (221)
Q Consensus 184 ~G~~~VvVT~G 194 (221)
+....|++|..
T Consensus 404 ~~~~~vvlKG~ 414 (508)
T PRK10565 404 RYGGVVVLKGA 414 (508)
T ss_pred HhCCEEEEeCC
Confidence 54345666443
No 81
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=95.16 E-value=0.15 Score=43.06 Aligned_cols=88 Identities=22% Similarity=0.255 Sum_probs=55.6
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCC---CCHHH
Q 027620 97 SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRI---GSEAD 173 (221)
Q Consensus 97 ~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~---~s~~~ 173 (221)
++.....+.++++.++.+ ++|+|+|. .|- |+-++..+.+.. -+ ..-+++||.-|..+|.+... .+...
T Consensus 114 dp~~~k~i~~iley~~~~--dvP~VIDa----DGL-~Lv~q~~e~l~~-~~-~~viLTPNvvEFkRLcd~~l~~~d~~~~ 184 (306)
T KOG3974|consen 114 DPAILKEIAKILEYLRGK--DVPLVIDA----DGL-WLVEQLPERLIG-GY-PKVILTPNVVEFKRLCDAELDKVDSHSQ 184 (306)
T ss_pred CHHHHHHHHHHHHHHhcC--CCcEEEcC----Cce-Eehhhchhhhhc-cC-ceeeeCCcHHHHHHHHHHhhccccchHH
Confidence 444477888999999998 99999997 553 333333332322 22 23789999999999987643 22233
Q ss_pred HHHHHHHHHHcCCCeEEEeeeeeC
Q 027620 174 GREACKILHAAGPAKVVITSINID 197 (221)
Q Consensus 174 ~~~a~~~L~~~G~~~VvVT~G~~~ 197 (221)
+...+.+| .+..++-.|+.|
T Consensus 185 ~~~L~~~l----~nv~vvqKG~~D 204 (306)
T KOG3974|consen 185 MQHLAAEL----MNVTVVQKGESD 204 (306)
T ss_pred HHHHHHHh----cCeEEEEecCCc
Confidence 44444443 234566677755
No 82
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=94.73 E-value=0.61 Score=42.59 Aligned_cols=101 Identities=14% Similarity=0.146 Sum_probs=67.3
Q ss_pred cc-EEEEeecCChh-------HHHHHHH---HHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEec
Q 027620 87 YT-HLLTGYIGSVS-------FLNTILQ---VVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTP 155 (221)
Q Consensus 87 ~~-~v~~G~l~~~~-------~~~~i~~---~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~p 155 (221)
+| ++++|+..-.. ..+.+.+ .++.+++.+|++++-+.-.. +.+.+.+..+.+.+++.+|-+=.
T Consensus 211 ~D~avlSG~q~l~d~y~dg~~~~e~l~~~~~~i~~l~~~~~~i~iH~E~As------~~~~~i~~~v~~~Ilp~VDSlGm 284 (453)
T PRK14039 211 MDGALISGFHLLLETYPDGSTYREKLEDSLAQLKWWKSKNEKLRIHAELGH------FASKEIANSVFLILAGIVDSIGM 284 (453)
T ss_pred CCEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHHHhcCCCceEEEEecC------cccHHHHHHHHHHhhcccccccC
Confidence 55 57778754211 1233333 34444445567888887643 24566677777679999999999
Q ss_pred CHHHHHHhcCC---CC-----CCHHHHHHHHHHHH-HcCCCeEEEee
Q 027620 156 NQFEAEQLTGF---RI-----GSEADGREACKILH-AAGPAKVVITS 193 (221)
Q Consensus 156 N~~Ea~~l~g~---~~-----~s~~~~~~a~~~L~-~~G~~~VvVT~ 193 (221)
|+.|+..+... .. .+.+++.+++..|+ +.|.+.+.|..
T Consensus 285 NEqELa~l~~~~g~~~~~i~~~~~~~v~ea~~~l~~~~~le~l~vHT 331 (453)
T PRK14039 285 NEDELAMLANLHGIPAEGILEMNAEAIGEAACQLASESGLQRLIIHT 331 (453)
T ss_pred CHHHHHHHHHHcccchhhHhhcCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 99999988654 22 35678888888887 56888887754
No 83
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=93.82 E-value=1.6 Score=40.07 Aligned_cols=114 Identities=16% Similarity=0.229 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcCccccc-EEEEeecCChh----------HHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhH
Q 027620 70 QQLCDLIEGLEANNLLYYT-HLLTGYIGSVS----------FLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSEL 138 (221)
Q Consensus 70 ~~i~~~l~~i~~~~~l~~~-~v~~G~l~~~~----------~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~ 138 (221)
+++...++.+.. .+| ++++|+..-.. ..+...+.++.+++.+|++++-|.-... .+.+.
T Consensus 210 eef~~~L~ei~~----~~D~avlSG~q~i~~~y~dg~~~~~~l~r~~~~i~~L~~~~~~i~iH~E~As~------~~~~i 279 (463)
T PRK03979 210 DELKEFLPEIGK----MVDGAILSGYQGIKEEYSDGKTAEYYLKRAKEDIKLLKKKNKDIKIHVEFASI------QNREI 279 (463)
T ss_pred HHHHHHHHhhcc----CCCEEEEechhhhhccccccccHHHHHHHHHHHHHHHhhCCCCceEEEEeccc------cCHHH
Confidence 455555444321 355 57787754211 2344455666676667788888886432 44666
Q ss_pred HHHHHHhcCCCceEEecCHHHHHHhc---CCC--------CCCHHHHHHHHHHHH-HcCCCeEEEee
Q 027620 139 VSVYREKVVPVASMLTPNQFEAEQLT---GFR--------IGSEADGREACKILH-AAGPAKVVITS 193 (221)
Q Consensus 139 ~~~l~~~ll~~~dvi~pN~~Ea~~l~---g~~--------~~s~~~~~~a~~~L~-~~G~~~VvVT~ 193 (221)
+..+.+.+++.+|-+=.|+.|+..+. |.. ....+++.+++..|+ +.|.+.+.|..
T Consensus 280 r~~i~~~ilp~vDSlGmNE~ELa~l~~~lg~~~l~~~i~~~~~i~~v~~a~~~L~~~~~leri~vHT 346 (463)
T PRK03979 280 RKKIITYILPHVDSVGMDETEIANILNVLGYEELSERILKESRIEDVIEGAKILLDELNLERVQVHT 346 (463)
T ss_pred HHHHHHhhccccccccCCHHHHHHHHHHhcCcchhhhhhccccHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 77777679999999999999998664 321 123577888888887 56888777643
No 84
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=93.35 E-value=0.22 Score=41.76 Aligned_cols=89 Identities=21% Similarity=0.187 Sum_probs=49.7
Q ss_pred ccEEEEeecCChhH-HHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHH--hcCCCceEEecCHHHHHHh
Q 027620 87 YTHLLTGYIGSVSF-LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE--KVVPVASMLTPNQFEAEQL 163 (221)
Q Consensus 87 ~~~v~~G~l~~~~~-~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~--~ll~~~dvi~pN~~Ea~~l 163 (221)
+|++.+|. +.. .+...++++.+.+. ..++|+|.- + ...+.+ .......+++|+..|+..|
T Consensus 68 ~~av~iGP---Glg~~~~~~~~~~~~~~~--~~p~VlDAD----a--------L~~l~~~~~~~~~~~IlTPH~gE~~rL 130 (242)
T PF01256_consen 68 ADAVVIGP---GLGRDEETEELLEELLES--DKPLVLDAD----A--------LNLLAENPKKRNAPVILTPHPGEFARL 130 (242)
T ss_dssp -SEEEE-T---T-SSSHHHHHHHHHHHHH--CSTEEEECH----H--------HHCHHHCCCCSSSCEEEE-BHHHHHHH
T ss_pred CCEEEeec---CCCCchhhHHHHHHHHhh--cceEEEehH----H--------HHHHHhccccCCCCEEECCCHHHHHHH
Confidence 56677773 222 22333455665555 667999972 1 011111 1456789999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHH-HcCCCeEEEee
Q 027620 164 TGFRIGSEADGREACKILH-AAGPAKVVITS 193 (221)
Q Consensus 164 ~g~~~~s~~~~~~a~~~L~-~~G~~~VvVT~ 193 (221)
++......++-.++++++. +.++ .|++|.
T Consensus 131 ~~~~~~~~~~~~~~a~~~a~~~~~-~vvLKG 160 (242)
T PF01256_consen 131 LGKSVEIQEDRIEAAREFAKEYGA-VVVLKG 160 (242)
T ss_dssp HTTTCHHCCSHHHHHHHHHHHHTS-EEEEES
T ss_pred hCCcccchhhHHHHHHHHHhhcCc-EEEEeC
Confidence 9986532344555666665 3454 455543
No 85
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=92.45 E-value=3.1 Score=38.02 Aligned_cols=113 Identities=18% Similarity=0.219 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCccccc-EEEEeecCChh----------HHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhH
Q 027620 70 QQLCDLIEGLEANNLLYYT-HLLTGYIGSVS----------FLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSEL 138 (221)
Q Consensus 70 ~~i~~~l~~i~~~~~l~~~-~v~~G~l~~~~----------~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~ 138 (221)
+++.+++..+.. .+| ++++|+..-.. ..+...+.++.+++ .|++++-|.-.. +.+.+.
T Consensus 197 ~~l~~~~~~i~~----~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~~~i~~L~~-~~~i~iH~E~As------~~~~~l 265 (446)
T TIGR02045 197 DQLRKFLPEIGE----PVDGAILSGYQGIKEEYSDGKTAKYYLERAKEDIELLKK-NKDLKIHVEFAS------IQNREI 265 (446)
T ss_pred HHHHHhhhhhhh----cccEEEEEchhhhhhhccCCccHhHHHHHHHHHHHHHhh-CCCCeEEEEecc------cccHHH
Confidence 455555555532 245 57787754211 23445556666655 368888887643 244666
Q ss_pred HHHHHHhcCCCceEEecCHHHHHHhc---CCC--------CCCHHHHHHHHHHHH-HcCCCeEEEee
Q 027620 139 VSVYREKVVPVASMLTPNQFEAEQLT---GFR--------IGSEADGREACKILH-AAGPAKVVITS 193 (221)
Q Consensus 139 ~~~l~~~ll~~~dvi~pN~~Ea~~l~---g~~--------~~s~~~~~~a~~~L~-~~G~~~VvVT~ 193 (221)
+..+.+.+++.+|-+=+|+.|+..+. |.. ....+++.+++..|+ +.|.+.+.|..
T Consensus 266 ~~~i~~~ilp~vDSlGMNE~ELa~ll~~lg~~~l~~~i~~~~~i~~vi~a~~~l~~~~~leri~vHT 332 (446)
T TIGR02045 266 RKKVVTNIFPHVDSVGMDEAEIANVLSVLGYDELSDRIFRYNRIEDLILGAKILLDELNLEVVQVHT 332 (446)
T ss_pred HHHHHHhhccccccccCCHHHHHHHHHHhcCCchhhhhhccccHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 77777679999999999999999876 321 133567888888877 56888887743
No 86
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.12 E-value=2.1 Score=38.85 Aligned_cols=173 Identities=16% Similarity=0.169 Sum_probs=93.8
Q ss_pred CCCCCCeEEEEeccCccCccchhh-cHHHHHhcCCceeeeeeEEeecCCCCCccceeeCCHHHHHHHHHHHHhcCccccc
Q 027620 10 LPSETGRVLSIQSHTVQGYVGNKS-AVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYT 88 (221)
Q Consensus 10 ~~~~~~~vl~i~~~~~~G~vG~d~-~~~~l~~~gi~~~~v~~~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~ 88 (221)
.+...|.|+-..|....|+-=.-. ....|++.|..+-.+.+++ .-|..++.+...-++.. ++
T Consensus 95 l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~--------------~RpAA~eQL~~La~q~~---v~ 157 (451)
T COG0541 95 LAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADT--------------YRPAAIEQLKQLAEQVG---VP 157 (451)
T ss_pred cCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEeccc--------------CChHHHHHHHHHHHHcC---Cc
Confidence 335556666666665544443333 4456888888876554443 11233333222222222 22
Q ss_pred EEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHH--HHHhcCC
Q 027620 89 HLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFE--AEQLTGF 166 (221)
Q Consensus 89 ~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~E--a~~l~g~ 166 (221)
+.+.-....|.++..+.+++++++.-+ .|++|.+ |.+-++++..+.+++ -..++.|++.= +..++|
T Consensus 158 --~f~~~~~~~Pv~Iak~al~~ak~~~~D-vvIvDTA----GRl~ide~Lm~El~~----Ik~~~~P~E~llVvDam~G- 225 (451)
T COG0541 158 --FFGSGTEKDPVEIAKAALEKAKEEGYD-VVIVDTA----GRLHIDEELMDELKE----IKEVINPDETLLVVDAMIG- 225 (451)
T ss_pred --eecCCCCCCHHHHHHHHHHHHHHcCCC-EEEEeCC----CcccccHHHHHHHHH----HHhhcCCCeEEEEEecccc-
Confidence 223322344688889999999986323 5899994 444467766665543 34455554431 223445
Q ss_pred CCCCHHHHHHHHHHHH-HcCCCeEEEeeeeeCCcEEEEEeeccCCCcceee
Q 027620 167 RIGSEADGREACKILH-AAGPAKVVITSINIDGNLFLIGSHQKEKVGPLCV 216 (221)
Q Consensus 167 ~~~s~~~~~~a~~~L~-~~G~~~VvVT~G~~~~~~~~~~~~~~~~~~~~~~ 216 (221)
+++...|+.+. ..+...||+|.=.-|..--...+....++.|+-|
T Consensus 226 -----QdA~~~A~aF~e~l~itGvIlTKlDGdaRGGaALS~~~~tg~PIkF 271 (451)
T COG0541 226 -----QDAVNTAKAFNEALGITGVILTKLDGDARGGAALSARAITGKPIKF 271 (451)
T ss_pred -----hHHHHHHHHHhhhcCCceEEEEcccCCCcchHHHhhHHHHCCCeEE
Confidence 47777788877 5689999999544332122223333455555543
No 87
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=91.20 E-value=3 Score=38.17 Aligned_cols=100 Identities=10% Similarity=0.024 Sum_probs=63.3
Q ss_pred cc-EEEEeecCCh-h-HHHHHHHHHHHHHh-cCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHH
Q 027620 87 YT-HLLTGYIGSV-S-FLNTILQVVEKLRS-INPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQ 162 (221)
Q Consensus 87 ~~-~v~~G~l~~~-~-~~~~i~~~i~~ak~-~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~ 162 (221)
+| ++++|+..-. . ..+.+.++.+.++. +.+++++=+.-.. +.+.+.++.+.. +++.+|-+-.|+.|+..
T Consensus 225 ~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i~iH~EfAs------~~d~~~r~~i~~-ilp~vDSlGmNE~ELa~ 297 (453)
T PRK14038 225 AELAIISGLQALTEENYREPFETVREHLKVLNERGIPAHLEFAF------TPDETVREEILG-LLGKFYSVGLNEVELAS 297 (453)
T ss_pred CCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCceEEEEeec------cchHHHHHHHHh-hCccccccccCHHHHHH
Confidence 55 5778875421 1 12333333333333 2236666666532 234667777776 99999999999999988
Q ss_pred hcC---C--------CC--CCHHHHHHHHHHHH-HcCCCeEEEee
Q 027620 163 LTG---F--------RI--GSEADGREACKILH-AAGPAKVVITS 193 (221)
Q Consensus 163 l~g---~--------~~--~s~~~~~~a~~~L~-~~G~~~VvVT~ 193 (221)
+.. . +. .+.+++.+++..|+ +.|.+.+.|..
T Consensus 298 ll~~lg~~~l~~~i~~~~~~~~~~v~e~~~~L~~~~gleri~vHT 342 (453)
T PRK14038 298 IMEVMGEKTLAEKLLAKDPVDPIAVTEAMLKLAEKTGVKRIHFHT 342 (453)
T ss_pred HHHHhccchhhhhhhhcCccCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 764 2 11 25678888888887 56888877643
No 88
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=91.06 E-value=7.6 Score=31.86 Aligned_cols=105 Identities=11% Similarity=0.129 Sum_probs=62.7
Q ss_pred eeeCCHHHHHHHHHHHHhcCcc---ccc-EEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHH
Q 027620 64 GQVLNGQQLCDLIEGLEANNLL---YYT-HLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELV 139 (221)
Q Consensus 64 G~~l~~~~i~~~l~~i~~~~~l---~~~-~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~ 139 (221)
|..++++++-+.+. +...+ ... ++++|=-| -.+.+.+.++++.+|+. |..+.+|. +|. .+.+.+
T Consensus 16 g~~~t~eel~~~~~---~~~~f~~~sggGVt~SGGEP-llq~~fl~~l~~~~k~~--gi~~~leT----nG~--~~~~~~ 83 (213)
T PRK10076 16 GRDITLDALEREVM---KDDIFFRTSGGGVTLSGGEV-LMQAEFATRFLQRLRLW--GVSCAIET----AGD--APASKL 83 (213)
T ss_pred CcccCHHHHHHHHH---hhhHhhcCCCCEEEEeCchH-HcCHHHHHHHHHHHHHc--CCCEEEEC----CCC--CCHHHH
Confidence 56677766655422 22110 112 45777544 23368889999999998 99999998 442 333333
Q ss_pred HHHHHhcCCCc-----eEEecCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCC
Q 027620 140 SVYREKVVPVA-----SMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPA 187 (221)
Q Consensus 140 ~~l~~~ll~~~-----dvi~pN~~Ea~~l~g~~~~s~~~~~~a~~~L~~~G~~ 187 (221)
+. +++.+ |+-.++.+.-..++|.. .+.+.+-++.+.+.|..
T Consensus 84 ~~----l~~~~D~~l~DiK~~d~~~~~~~tG~~---~~~il~nl~~l~~~g~~ 129 (213)
T PRK10076 84 LP----LAKLCDEVLFDLKIMDATQARDVVKMN---LPRVLENLRLLVSEGVN 129 (213)
T ss_pred HH----HHHhcCEEEEeeccCCHHHHHHHHCCC---HHHHHHHHHHHHhCCCc
Confidence 33 44444 45455666667788864 34555556666666653
No 89
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=90.39 E-value=1.6 Score=37.52 Aligned_cols=68 Identities=24% Similarity=0.141 Sum_probs=38.1
Q ss_pred ceEEecCHHHHHHhcCCCCCC-HHHHHHHHHHHHHcCCCeEEEeeeeeCCcEEE---EEeeccCCCcceeecCC
Q 027620 150 ASMLTPNQFEAEQLTGFRIGS-EADGREACKILHAAGPAKVVITSINIDGNLFL---IGSHQKEKVGPLCVKGL 219 (221)
Q Consensus 150 ~dvi~pN~~Ea~~l~g~~~~s-~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~~---~~~~~~~~~~~~~~~~~ 219 (221)
..+++|+..|++.|++.++.+ +.+=.++++++.++-...||+ .|+.+ -+.. -.+.++....++|.+|.
T Consensus 153 ~~VlTPH~gEf~rL~g~~~~~~~~~r~~~a~~~a~~~~~vvVL-KG~~t-vI~~~~g~~~~n~~G~~~ma~GGt 224 (284)
T COG0063 153 KVVLTPHPGEFARLLGTEVDEIEVDRLEAARELAAKYGAVVVL-KGAVT-VIADPDGEVFVNPTGNPGMATGGT 224 (284)
T ss_pred cEEECCCHHHHHHhcCCcccccccchHHHHHHHHHHcCCEEEE-eCCCC-EEEcCCCcEEEcCCCCHHhccCcc
Confidence 489999999999999965432 234445566666543334444 44423 1111 12333444444787774
No 90
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=85.74 E-value=29 Score=31.93 Aligned_cols=117 Identities=11% Similarity=0.136 Sum_probs=65.0
Q ss_pred eCCHHHHHHHHHHHHh------cCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHH
Q 027620 66 VLNGQQLCDLIEGLEA------NNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELV 139 (221)
Q Consensus 66 ~l~~~~i~~~l~~i~~------~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~ 139 (221)
.++.+++.+-++.+.. ...+..|.|-+|+.+. ..+.+..+++.+++. .++++++|. .+++..
T Consensus 101 ~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~--dp~~v~~~Vk~V~~~-~dvPLSIDT---------~dpevl 168 (450)
T PRK04165 101 TMDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG--DPEKFAKAVKKVAET-TDLPLILCS---------EDPAVL 168 (450)
T ss_pred CCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC--CHHHHHHHHHHHHHh-cCCCEEEeC---------CCHHHH
Confidence 4566677776666621 1233477788888654 345567788887762 278999997 223333
Q ss_pred H-HHHHhcC-CCceEEecCHH---HHHHh---cCCCC----CCHHHHHHHHHHHHHcCCCeEEEeeee
Q 027620 140 S-VYREKVV-PVASMLTPNQF---EAEQL---TGFRI----GSEADGREACKILHAAGPAKVVITSIN 195 (221)
Q Consensus 140 ~-~l~~~ll-~~~dvi~pN~~---Ea~~l---~g~~~----~s~~~~~~a~~~L~~~G~~~VvVT~G~ 195 (221)
+ +++. .. ...++.-.|.+ ++..+ .|.++ .+.+.+.+..+.+.+.|.+.+++=-|.
T Consensus 169 eaAlea-gad~~plI~Sat~dN~~~m~~la~~yg~pvVv~~~dl~~L~~lv~~~~~~GI~dIILDPg~ 235 (450)
T PRK04165 169 KAALEV-VADRKPLLYAATKENYEEMAELAKEYNCPLVVKAPNLEELKELVEKLQAAGIKDLVLDPGT 235 (450)
T ss_pred HHHHHh-cCCCCceEEecCcchHHHHHHHHHHcCCcEEEEchhHHHHHHHHHHHHHcCCCcEEECCCC
Confidence 3 3322 21 24466666643 23222 22221 113456666777778888777765443
No 91
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=83.52 E-value=7.2 Score=35.72 Aligned_cols=99 Identities=21% Similarity=0.185 Sum_probs=54.7
Q ss_pred cc-EEEEeecCCh----------hHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEec
Q 027620 87 YT-HLLTGYIGSV----------SFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTP 155 (221)
Q Consensus 87 ~~-~v~~G~l~~~----------~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~p 155 (221)
+| +|++|+..-. ...+.+.+.++.+++ +++++|-+.-.. +.+++.+..+.+.++|++|-+=.
T Consensus 210 ~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~l~~-~~~~~iH~E~As------~~d~~l~~~i~~~ilp~vDSlGm 282 (444)
T PF04587_consen 210 PDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKLLKS-NPDIPIHLELAS------FADEELRKEILEKILPHVDSLGM 282 (444)
T ss_dssp -SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHHHH--HTT-EEEEE----------SSHHHHHHHHHHHGGGSSEEEE
T ss_pred CCEEEEeccccchhhccchhHHHHHHHHHHHHHHhccC-CCCCceEEEecc------ccCHHHHHHHHHHhhcccccccc
Confidence 56 4777775422 112333444455663 358888888632 24567777777679999999999
Q ss_pred CHHHHHHhc---CCCC--------C--CHHHHHHHHHHHHH-cCCCeEEEe
Q 027620 156 NQFEAEQLT---GFRI--------G--SEADGREACKILHA-AGPAKVVIT 192 (221)
Q Consensus 156 N~~Ea~~l~---g~~~--------~--s~~~~~~a~~~L~~-~G~~~VvVT 192 (221)
|+.|+..+. |.+. . +...+.++...|.+ .|.+.+.+.
T Consensus 283 NEqEL~~l~~~lg~~~~~~~~~~~~~v~~~~v~~~~~~L~~~~~l~RIhvH 333 (444)
T PF04587_consen 283 NEQELANLLSVLGGPELSERIDSYPRVEVDQVLEALIWLLKEYGLTRIHVH 333 (444)
T ss_dssp EHHHHHHHHHHTT-HHHHHHHHHSSSHHHHHHHHHHHHHHHHH--SEEEEE
T ss_pred CHHHHHHHHHHhCCCccccccccCCCccHHHHHHHHHHHHHHcCCCEEEEE
Confidence 999999864 3210 1 11234566666664 487776664
No 92
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=76.42 E-value=13 Score=34.24 Aligned_cols=147 Identities=17% Similarity=0.143 Sum_probs=72.1
Q ss_pred cCccchhhcHHHHHhcCCceeeeeeEEeecCCCCCccceeeCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHH
Q 027620 26 QGYVGNKSAVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTIL 105 (221)
Q Consensus 26 ~G~vG~d~~~~~l~~~gi~~~~v~~~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~ 105 (221)
.|.|+.. ....+..+|.++-.+..+...+...+.. ..+.+.++. -+++.+++ .++.- +........
T Consensus 376 ~GGVarN-~A~a~~~lg~d~~liSavG~d~n~~~~~----~~~~~~~e~-~~dl~~a~-----~I~~D---sNiS~~~Ma 441 (614)
T KOG3009|consen 376 MGGVARN-HADALARLGCDSVLISAVGDDNNGHFFR----QNSHKIVES-NEDLLSAD-----FILLD---SNISVPVMA 441 (614)
T ss_pred ccchhhh-HHHHHHHhcCCeeEEEEeccCCcchhhh----hhhhhhhhh-hhhhhcCC-----EEEEc---CCCCHHHHH
Confidence 4445433 3345677888877776664222111211 111111221 12232333 23332 233456666
Q ss_pred HHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHh-cCCCC-------CCHHHHHHH
Q 027620 106 QVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQL-TGFRI-------GSEADGREA 177 (221)
Q Consensus 106 ~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l-~g~~~-------~s~~~~~~a 177 (221)
++++ +|.+ +.+|+|.|--.+. ....++-.+..-++.++||..|+-.. .+..+ .+.+.+.+.
T Consensus 442 ~il~-ak~~--k~~V~fEPTd~~k--------~~K~fk~l~v~~i~~i~PN~~Ell~a~k~~~v~~nps~~q~~~~~~~~ 510 (614)
T KOG3009|consen 442 RILE-AKKH--KKQVWFEPTDIDK--------VKKVFKTLLVGAITAISPNANELLKAAKLCHVSVNPSVIQTADGVLEL 510 (614)
T ss_pred HHHH-hhhc--cCceEecCCCchh--------hhhhhhhcceeeEEeeCCCHHHHHHHhhcCceeeChhhhccchHHHHH
Confidence 7777 7877 8899999943221 11222221223589999999997432 22221 223444444
Q ss_pred HHHHH---HcCCCeEEEeeeeeCC
Q 027620 178 CKILH---AAGPAKVVITSINIDG 198 (221)
Q Consensus 178 ~~~L~---~~G~~~VvVT~G~~~~ 198 (221)
++.+. ...-...++|+.. .|
T Consensus 511 ~~~~~~k~~~~~s~~I~tl~~-~G 533 (614)
T KOG3009|consen 511 IEKEKTKLLLNTSIFIVTLAN-KG 533 (614)
T ss_pred HHHHHHHhhcccceEEEEecc-Cc
Confidence 44432 2344556777665 55
No 93
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=72.62 E-value=58 Score=27.51 Aligned_cols=86 Identities=15% Similarity=0.140 Sum_probs=54.1
Q ss_pred EEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCC--CceEEecCHHHHHHhcCC
Q 027620 89 HLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVP--VASMLTPNQFEAEQLTGF 166 (221)
Q Consensus 89 ~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~--~~dvi~pN~~Ea~~l~g~ 166 (221)
+..+|=-| -.+.+.+.++++.+|+. |..+.+|. +| +..++..+.+.+ +.. ..|+=-+|.+-...++|.
T Consensus 87 vt~SGGEP-~~q~e~~~~~~~~ake~--Gl~~~l~T----nG--~~~~~~~~~l~~-~~D~v~~DlK~~~~~~y~~~tg~ 156 (260)
T COG1180 87 VTFSGGEP-TLQAEFALDLLRAAKER--GLHVALDT----NG--FLPPEALEELLP-LLDAVLLDLKAFDDELYRKLTGA 156 (260)
T ss_pred EEEECCcc-hhhHHHHHHHHHHHHHC--CCcEEEEc----CC--CCCHHHHHHHHh-hcCeEEEeeccCChHHHHHHhCC
Confidence 34666544 34579999999999999 99999999 44 233444433332 222 233333444447777877
Q ss_pred CCCCHHHHHHHHHHHHHcCCC
Q 027620 167 RIGSEADGREACKILHAAGPA 187 (221)
Q Consensus 167 ~~~s~~~~~~a~~~L~~~G~~ 187 (221)
.. +.+.+.++.+.++|..
T Consensus 157 ~~---~~vl~~~~~l~~~g~~ 174 (260)
T COG1180 157 DN---EPVLENLELLADLGVH 174 (260)
T ss_pred Cc---HHHHHHHHHHHcCCCe
Confidence 53 5666777777777753
No 94
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=70.91 E-value=9.3 Score=32.37 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=25.6
Q ss_pred EEEEeccCccCccchhh---cHHHHHhcCCceeeeeeE
Q 027620 17 VLSIQSHTVQGYVGNKS---AVFPLQLLGYDVDPIHSV 51 (221)
Q Consensus 17 vl~i~~~~~~G~vG~d~---~~~~l~~~gi~~~~v~~~ 51 (221)
|+++.+--..|.+=+.. +.+.|...|+++..+.++
T Consensus 6 iI~vG~ElL~G~ivdtNa~~la~~L~~~G~~v~~~~~V 43 (255)
T COG1058 6 IIAVGDELLSGRIVDTNAAFLADELTELGVDLARITTV 43 (255)
T ss_pred EEEEccceecCceecchHHHHHHHHHhcCceEEEEEec
Confidence 45555555788877555 556899999999988766
No 95
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=70.14 E-value=11 Score=31.88 Aligned_cols=134 Identities=16% Similarity=0.173 Sum_probs=72.8
Q ss_pred cHHHHHhcCCceeeeeeEEeecC---------CCCCcc-----ceeeCCHHHHHHHHHHHHhcCcccccEEEEeecCChh
Q 027620 34 AVFPLQLLGYDVDPIHSVQFSNH---------TGYPTF-----KGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVS 99 (221)
Q Consensus 34 ~~~~l~~~gi~~~~v~~~~~~~~---------~~~~~~-----~G~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~ 99 (221)
.+.-|++.||+.++-+.++.... ++..++ +-+.++.++..++ ++.+..|+|+. +--| ..
T Consensus 73 lLddl~~rgIdishcpftd~~pp~ssiI~~r~s~trTil~~dks~p~vT~~dF~kv--dl~qy~WihfE----~Rnp-~e 145 (308)
T KOG2947|consen 73 LLDDLRRRGIDISHCPFTDHSPPFSSIIINRNSGTRTILYCDKSLPDVTATDFEKV--DLTQYGWIHFE----ARNP-SE 145 (308)
T ss_pred HHHHHHhcCCCcccCccccCCCCcceEEEecCCCceEEEEecCCCccccHHHhhhc--ccceeeeEEEe----cCCh-HH
Confidence 66678999998876654432111 111111 1246777777765 67777776543 2222 23
Q ss_pred HHHHHHHHHHHHHhcC--CCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCCHHHHHHH
Q 027620 100 FLNTILQVVEKLRSIN--PNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREA 177 (221)
Q Consensus 100 ~~~~i~~~i~~ak~~~--~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s~~~~~~a 177 (221)
....+..+.++=.... -++.|.+|- . ..++...+ ++.++|++....+=|..+ |.. +.+++
T Consensus 146 tlkM~~~I~~~N~r~pe~qrI~vSvd~----e-------n~req~~~-l~am~DyVf~sK~~a~~~-gfk-----s~rea 207 (308)
T KOG2947|consen 146 TLKMLQRIDAHNTRQPEEQRIRVSVDV----E-------NPREQLFQ-LFAMCDYVFVSKDVAKHL-GFK-----SPREA 207 (308)
T ss_pred HHHHHHHHHHhhcCCCccceEEEEEEe----c-------CcHHHHHH-HhhcccEEEEEHHHHhhh-ccC-----CHHHH
Confidence 3455555555432221 135577774 1 11234444 889999999999888875 432 33444
Q ss_pred HHHHH----HcCCCeEEEe
Q 027620 178 CKILH----AAGPAKVVIT 192 (221)
Q Consensus 178 ~~~L~----~~G~~~VvVT 192 (221)
++.+. ..+++-|+|-
T Consensus 208 ~~~l~~r~~~~~pkpv~I~ 226 (308)
T KOG2947|consen 208 CEGLYGRVPKGKPKPVLIC 226 (308)
T ss_pred HHHHHhhcccCCCCcEEEe
Confidence 44443 3345556654
No 96
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=69.97 E-value=14 Score=33.06 Aligned_cols=81 Identities=17% Similarity=0.146 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCCHHHHHHH
Q 027620 98 VSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREA 177 (221)
Q Consensus 98 ~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s~~~~~~a 177 (221)
+.+..-+.+.-+.+++. ++++++|. . +..+.+.+|+-++.+-.. .++++.
T Consensus 202 pVSm~n~r~v~~ia~ky--~ipvv~Da----~---------------RfaENaYFIk~rE~gYrd---------~sI~~I 251 (471)
T COG3033 202 PVSMANMKAVYEIAKKY--DIPVVMDA----A---------------RFAENAYFIKQREPGYRD---------WSIEEI 251 (471)
T ss_pred cchHHhHHHHHHHHHHc--CCcEEeeh----h---------------hhhhhhhhhhhcCccccc---------ccHHHH
Confidence 44456667777788888 99999997 2 244567777776665432 256666
Q ss_pred HHHHHHcCCCeEEEeeeeeCCcEEEEEeeccCCCcceeecC
Q 027620 178 CKILHAAGPAKVVITSINIDGNLFLIGSHQKEKVGPLCVKG 218 (221)
Q Consensus 178 ~~~L~~~G~~~VvVT~G~~~~~~~~~~~~~~~~~~~~~~~~ 218 (221)
+++..+.+- -+.-.|+.|| . .+.|+|+|++-
T Consensus 252 arEm~sYaD--~~~mS~KKD~-l-------vnmGGfl~~~D 282 (471)
T COG3033 252 AREMYSYAD--GCTMSAKKDG-L-------VNMGGFLCFKD 282 (471)
T ss_pred HHHHHhhhh--hheeeccccc-e-------eccccEEEecC
Confidence 666665431 1112344333 2 25677777653
No 97
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=68.82 E-value=61 Score=26.23 Aligned_cols=134 Identities=16% Similarity=0.161 Sum_probs=69.4
Q ss_pred CCeEEEEeccCccCccchhhcHHH-HHhcCCceeeeeeEEeecCCC-CCccceeeCCHHHHHHHHHHHHhcCcccccEEE
Q 027620 14 TGRVLSIQSHTVQGYVGNKSAVFP-LQLLGYDVDPIHSVQFSNHTG-YPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLL 91 (221)
Q Consensus 14 ~~~vl~i~~~~~~G~vG~d~~~~~-l~~~gi~~~~v~~~~~~~~~~-~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~~v~ 91 (221)
++.++.+.|- +.+|.+.+++. +++.++..| |..++|+...| .-..+-.-++.++.++. ++....|...-+.
T Consensus 3 ~G~l~vlsgP---SG~GKsTl~k~L~~~~~l~~S-VS~TTR~pR~gEv~G~dY~Fvs~~EF~~~---i~~~~fLE~a~~~ 75 (191)
T COG0194 3 KGLLIVLSGP---SGVGKSTLVKALLEDDKLRFS-VSATTRKPRPGEVDGVDYFFVTEEEFEEL---IERDEFLEWAEYH 75 (191)
T ss_pred CceEEEEECC---CCCCHHHHHHHHHhhcCeEEE-EEeccCCCCCCCcCCceeEeCCHHHHHHH---HhcCCcEEEEEEc
Confidence 4555555544 34666776665 444433333 22334433222 11111124677666664 5444443332234
Q ss_pred EeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCC---CceEEecCHHHHHH-hcCCC
Q 027620 92 TGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVP---VASMLTPNQFEAEQ-LTGFR 167 (221)
Q Consensus 92 ~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~---~~dvi~pN~~Ea~~-l~g~~ 167 (221)
.++. +++...+.++++ . |..|++|.-. .....+++ .++ .+.+..|+.+|++. |.|+.
T Consensus 76 gnyY--GT~~~~ve~~~~----~--G~~vildId~----------qGa~qvk~-~~p~~v~IFi~pPs~eeL~~RL~~Rg 136 (191)
T COG0194 76 GNYY--GTSREPVEQALA----E--GKDVILDIDV----------QGALQVKK-KMPNAVSIFILPPSLEELERRLKGRG 136 (191)
T ss_pred CCcc--cCcHHHHHHHHh----c--CCeEEEEEeh----------HHHHHHHH-hCCCeEEEEEcCCCHHHHHHHHHccC
Confidence 4553 445555544433 3 7789999622 22334454 454 46788899999985 66766
Q ss_pred CCCHHH
Q 027620 168 IGSEAD 173 (221)
Q Consensus 168 ~~s~~~ 173 (221)
-++++.
T Consensus 137 tds~e~ 142 (191)
T COG0194 137 TDSEEV 142 (191)
T ss_pred CCCHHH
Confidence 555544
No 98
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=66.05 E-value=62 Score=25.31 Aligned_cols=99 Identities=19% Similarity=0.126 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEE--cccccCCCCCCCchhHHHHHHHhcC
Q 027620 70 QQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVC--DPVMGDEGKLYVPSELVSVYREKVV 147 (221)
Q Consensus 70 ~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvl--Dp~~~~~g~~~~~~~~~~~l~~~ll 147 (221)
+-+..+++...... ..+.++|. ..+.+.++.+.+++++|++.++- ||-.... ..++..+.+++
T Consensus 33 dl~~~ll~~~~~~~---~~v~llG~-----~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~----~~~~i~~~I~~--- 97 (171)
T cd06533 33 DLMPALLELAAQKG---LRVFLLGA-----KPEVLEKAAERLRARYPGLKIVGYHHGYFGPE----EEEEIIERINA--- 97 (171)
T ss_pred HHHHHHHHHHHHcC---CeEEEECC-----CHHHHHHHHHHHHHHCCCcEEEEecCCCCChh----hHHHHHHHHHH---
Confidence 34456666665432 22356664 24556667777888899998874 5532211 12233445544
Q ss_pred CCceEEecCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCeEEEeeee
Q 027620 148 PVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSIN 195 (221)
Q Consensus 148 ~~~dvi~pN~~Ea~~l~g~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~ 195 (221)
..+|++.. -+|.+ .-+..+.++.+.....++++.|.
T Consensus 98 ~~pdiv~v-------glG~P-----kQE~~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 98 SGADILFV-------GLGAP-----KQELWIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred cCCCEEEE-------ECCCC-----HHHHHHHHHHHHCCCCEEEEece
Confidence 36788754 23443 22234455555555678888887
No 99
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=63.62 E-value=39 Score=29.82 Aligned_cols=110 Identities=13% Similarity=0.072 Sum_probs=61.1
Q ss_pred HHHHHHHhcCcccccEEEEeecCChhH----HHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhc-C-
Q 027620 74 DLIEGLEANNLLYYTHLLTGYIGSVSF----LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKV-V- 147 (221)
Q Consensus 74 ~~l~~i~~~~~l~~~~v~~G~l~~~~~----~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~l-l- 147 (221)
+...+|+.+....+.-|+++.++.+.. .....++++.|++. |..+++|-+|.--..+=++....+.+.+ + +
T Consensus 17 ~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~~~~~~~~ell~~Ankl--g~~vivDvnPsil~~l~~S~~~l~~f~e-~G~~ 93 (360)
T COG3589 17 KDIAYIDRMHKYGFKRIFTSLLIPEEDAELYFHRFKELLKEANKL--GLRVIVDVNPSILKELNISLDNLSRFQE-LGVD 93 (360)
T ss_pred hHHHHHHHHHHcCccceeeecccCCchHHHHHHHHHHHHHHHHhc--CcEEEEEcCHHHHhhcCCChHHHHHHHH-hhhh
Confidence 333445444333455577777664443 34567788899988 9999999987510000022332333333 2 2
Q ss_pred -CCceEEecCHHHHHHhcC-CCCC-CHHHHHHHHHHHHHcCC
Q 027620 148 -PVASMLTPNQFEAEQLTG-FRIG-SEADGREACKILHAAGP 186 (221)
Q Consensus 148 -~~~dvi~pN~~Ea~~l~g-~~~~-s~~~~~~a~~~L~~~G~ 186 (221)
-+.|.=+++++++++... .++. +.....+....|++.++
T Consensus 94 glRlD~gfS~eei~~ms~~~lkieLN~S~it~~l~~l~~~~a 135 (360)
T COG3589 94 GLRLDYGFSGEEIAEMSKNPLKIELNASTITELLDSLLAYKA 135 (360)
T ss_pred heeecccCCHHHHHHHhcCCeEEEEchhhhHHHHHHHHHhcc
Confidence 268888898888887655 3321 23334444444444433
No 100
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=62.82 E-value=8.9 Score=31.29 Aligned_cols=50 Identities=26% Similarity=0.207 Sum_probs=38.3
Q ss_pred cCCCceEEecCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCCeEEEeeee
Q 027620 146 VVPVASMLTPNQFEAEQLTGF-RIGSEADGREACKILHAAGPAKVVITSIN 195 (221)
Q Consensus 146 ll~~~dvi~pN~~Ea~~l~g~-~~~s~~~~~~a~~~L~~~G~~~VvVT~G~ 195 (221)
|-.+..++.|+....+.+... ++.=-..+++.+++|+++|+...++++|=
T Consensus 64 L~~Rl~llqp~~~qv~~~v~~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF 114 (227)
T KOG1615|consen 64 LAARLSLLQPLQVQVEQFVIKQKPTLTPGIRELVSRLHARGTQVYLISGGF 114 (227)
T ss_pred HHHHHHHhcccHHHHHHHHhcCCCccCCCHHHHHHHHHHcCCeEEEEcCCh
Confidence 334778999999998877543 33222468899999999999988998885
No 101
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=60.86 E-value=84 Score=25.05 Aligned_cols=75 Identities=16% Similarity=0.090 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHH---HhcCCCCCCHHHH
Q 027620 98 VSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAE---QLTGFRIGSEADG 174 (221)
Q Consensus 98 ~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~---~l~g~~~~s~~~~ 174 (221)
..+.+.+..+-+..+.+ ++.|+.||-. .| +..+..+.+ .+|.+-=......++. .-.|.+..+++++
T Consensus 32 ~i~~~~i~~i~~~~~~r--gVIIfTDpD~--~G-----ekIRk~i~~-~vp~~khafi~~~~a~~~~~~iGVE~As~e~I 101 (174)
T TIGR00334 32 ALKDETINLIKKAQKKQ--GVIILTDPDF--PG-----EKIRKKIEQ-HLPGYENCFIPKHLAKPNKKKIGVEEASVEAI 101 (174)
T ss_pred ccCHHHHHHHHHHhhcC--CEEEEeCCCC--ch-----HHHHHHHHH-HCCCCeEEeeeHHhcCcCCCCcccCCCCHHHH
Confidence 33456666555556666 9999999932 22 444555555 5675544444455542 2357777778888
Q ss_pred HHHHHHHH
Q 027620 175 REACKILH 182 (221)
Q Consensus 175 ~~a~~~L~ 182 (221)
.+|.....
T Consensus 102 ~~AL~~~~ 109 (174)
T TIGR00334 102 IAALENVH 109 (174)
T ss_pred HHHHHHhc
Confidence 88766554
No 102
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=60.17 E-value=79 Score=25.73 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=25.4
Q ss_pred ccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccC
Q 027620 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD 128 (221)
Q Consensus 87 ~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~ 128 (221)
++.+++|+ +.-...-.++++.+++. +.+|++|-...+
T Consensus 24 v~~iKvg~---~l~~~~g~~~i~~l~~~--~~~i~~DlK~~D 60 (216)
T cd04725 24 VCAVKVGL---ELFEAAGPEIVKELREL--GFLVFLDLKLGD 60 (216)
T ss_pred ccEEEECH---HHHHhcCHHHHHHHHHC--CCcEEEEeecCc
Confidence 45788876 33344456678888887 778999986543
No 103
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=59.06 E-value=72 Score=25.62 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=17.7
Q ss_pred CeEEEEeccCccCccchhh-cHHHHHhcCCceeeeeeE
Q 027620 15 GRVLSIQSHTVQGYVGNKS-AVFPLQLLGYDVDPIHSV 51 (221)
Q Consensus 15 ~~vl~i~~~~~~G~vG~d~-~~~~l~~~gi~~~~v~~~ 51 (221)
|+|+.+.|-..+|+--.-+ ....++..|-.+..+..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D 38 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISAD 38 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCC
Confidence 5677776664444433333 223455556666555433
No 104
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=57.75 E-value=49 Score=28.75 Aligned_cols=88 Identities=19% Similarity=0.219 Sum_probs=53.9
Q ss_pred eeeCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHH
Q 027620 64 GQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYR 143 (221)
Q Consensus 64 G~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~ 143 (221)
|..++++++.+++...+.... + .+-+.|--|. .....|.++++.+.. ++|++++.++. .+.++...
T Consensus 146 g~~v~~e~La~i~~~~~~~Ga-k-NvN~Vgg~Pt-p~lp~Ile~l~~~~~---~iPvvwNSnmY------~s~E~l~l-- 211 (335)
T COG1313 146 GKEVTPEDLAEIILELRRHGA-K-NVNFVGGDPT-PHLPFILEALRYASE---NIPVVWNSNMY------MSEETLKL-- 211 (335)
T ss_pred CeEecHHHHHHHHHHHHHhcC-c-ceeecCCCCC-CchHHHHHHHHHHhc---CCCEEEecCCc------cCHHHHHH--
Confidence 557788999888776664432 1 1223332221 226777788888766 58999998654 34444332
Q ss_pred HhcCCCceEEec-----CHHHHHHhcCCC
Q 027620 144 EKVVPVASMLTP-----NQFEAEQLTGFR 167 (221)
Q Consensus 144 ~~ll~~~dvi~p-----N~~Ea~~l~g~~ 167 (221)
|...+|+..| |.+-|..+.+.+
T Consensus 212 --L~gvVDiyL~DfKYgNdeca~kySkvp 238 (335)
T COG1313 212 --LDGVVDIYLPDFKYGNDECAEKYSKVP 238 (335)
T ss_pred --hhccceeeecccccCCHHHHHHhhcCC
Confidence 4445666655 666677787764
No 105
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=56.24 E-value=70 Score=29.39 Aligned_cols=72 Identities=21% Similarity=0.127 Sum_probs=45.4
Q ss_pred cc-EEEEeecCChh-------HHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHH
Q 027620 87 YT-HLLTGYIGSVS-------FLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQF 158 (221)
Q Consensus 87 ~~-~v~~G~l~~~~-------~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~ 158 (221)
+| +|++|+..-.. ..+.+.++.+.++...+++++=|.-.. +.+.+.+..+.+.+++++|-+=.|+.
T Consensus 206 pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~As------~~d~~l~~~i~~~ilp~VDSlGmNEq 279 (445)
T cd01938 206 PDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHLELAS------TVDEELREEILHEVVPYVDSLGLNEQ 279 (445)
T ss_pred CCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEecc------cccHHHHHHHHHHhcccccccccCHH
Confidence 66 57777754221 233334444444443334666666432 24567777777779999999999999
Q ss_pred HHHHhc
Q 027620 159 EAEQLT 164 (221)
Q Consensus 159 Ea~~l~ 164 (221)
|+..+.
T Consensus 280 EL~~l~ 285 (445)
T cd01938 280 ELANLL 285 (445)
T ss_pred HHHHHH
Confidence 998875
No 106
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=54.24 E-value=1.2e+02 Score=26.84 Aligned_cols=110 Identities=15% Similarity=0.051 Sum_probs=63.0
Q ss_pred eeCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHH
Q 027620 65 QVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE 144 (221)
Q Consensus 65 ~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~ 144 (221)
..++.+++.+....+....+-.+ .+..|--|.....+.+.++++.+++..|.+.+-+.| ++.+..+.+++
T Consensus 101 ~~Ls~eEI~~~a~~~~~~Gv~~i-~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~Iei~~---------lt~e~~~~Lk~ 170 (366)
T TIGR02351 101 KKLNEEEIEREIEAIKKSGFKEI-LLVTGESEKAAGVEYIAEAIKLAREYFSSLAIEVQP---------LNEEEYKKLVE 170 (366)
T ss_pred CcCCHHHHHHHHHHHHhCCCCEE-EEeeCCCCCCCCHHHHHHHHHHHHHhCCcccccccc---------CCHHHHHHHHH
Confidence 35688888887776665532111 133465555455788899999998765544332222 34555566665
Q ss_pred hcCCCceEEec-----CHHHHHHhcC-CCCCCHHHHHHHHHHHHHcCCC
Q 027620 145 KVVPVASMLTP-----NQFEAEQLTG-FRIGSEADGREACKILHAAGPA 187 (221)
Q Consensus 145 ~ll~~~dvi~p-----N~~Ea~~l~g-~~~~s~~~~~~a~~~L~~~G~~ 187 (221)
. .++-+.. |.+-...+.. -+-.+.++..++.+.+.+.|.+
T Consensus 171 a---Gv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 216 (366)
T TIGR02351 171 A---GLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMR 216 (366)
T ss_pred c---CCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 3 4444444 3433333331 1223567777778888888865
No 107
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=53.96 E-value=80 Score=26.68 Aligned_cols=80 Identities=11% Similarity=0.111 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHH------HHHh--cCCC-----
Q 027620 101 LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFE------AEQL--TGFR----- 167 (221)
Q Consensus 101 ~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~E------a~~l--~g~~----- 167 (221)
.+-+..+.+.+++. |.+++-+| ++.+..+. +.+.+|+++.-..+ +..+ +|.+
T Consensus 65 ~~gl~~L~~~~~~~--Gl~~~Tev---------~d~~~v~~----~~e~vdilqIgs~~~~n~~LL~~va~tgkPVilk~ 129 (250)
T PRK13397 65 LQGIRYLHEVCQEF--GLLSVSEI---------MSERQLEE----AYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKR 129 (250)
T ss_pred HHHHHHHHHHHHHc--CCCEEEee---------CCHHHHHH----HHhcCCEEEECcccccCHHHHHHHHccCCeEEEeC
Confidence 34555555666666 77777776 22332332 22356666543332 2222 2333
Q ss_pred --CCCHHHHHHHHHHHHHcCCCeEEEee-ee
Q 027620 168 --IGSEADGREACKILHAAGPAKVVITS-IN 195 (221)
Q Consensus 168 --~~s~~~~~~a~~~L~~~G~~~VvVT~-G~ 195 (221)
..+.++...+++++.+.|.+.+++.- |-
T Consensus 130 G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~ 160 (250)
T PRK13397 130 GLMATIEEYLGALSYLQDTGKSNIILCERGV 160 (250)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEEcccc
Confidence 24678999999999999988887775 64
No 108
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=53.25 E-value=1.3e+02 Score=25.42 Aligned_cols=56 Identities=11% Similarity=0.190 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHhcCcccccEEEEeecCChh--HHHHHHHHHHHHHhcCCCCeEEEcccc
Q 027620 67 LNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVS--FLNTILQVVEKLRSINPNLIYVCDPVM 126 (221)
Q Consensus 67 l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~--~~~~i~~~i~~ak~~~~~~~vvlDp~~ 126 (221)
.+.++++...+++.....+.++++..|.|-... ..+...++++.++ +.++.|.-..
T Consensus 67 Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~----~~~vTFHRAf 124 (248)
T PRK11572 67 YSDGEFAAMLEDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAG----PLAVTFHRAF 124 (248)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhc----CCceEEechh
Confidence 567888888888876655568889999987443 3677788888874 4578777543
No 109
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=50.79 E-value=1.3e+02 Score=25.66 Aligned_cols=68 Identities=13% Similarity=0.014 Sum_probs=43.0
Q ss_pred EEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCC----CCCchhHHHHHHHhcCCCceEEecCHHH
Q 027620 90 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK----LYVPSELVSVYREKVVPVASMLTPNQFE 159 (221)
Q Consensus 90 v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~----~~~~~~~~~~l~~~ll~~~dvi~pN~~E 159 (221)
|..|+.......+.+.++.+.|++. |.|++.=+-|+.+.. ....+....+-|-..--.+|++|-|-.+
T Consensus 118 Vy~Gse~e~~~i~~~~~v~~~a~~~--Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg 189 (265)
T COG1830 118 VYVGSETEREMIENISQVVEDAHEL--GMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTG 189 (265)
T ss_pred EecCCcchHHHHHHHHHHHHHHHHc--CCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCC
Confidence 6778877777788888899999999 999999877663321 1111111112221122279999987663
No 110
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=50.37 E-value=1.4e+02 Score=28.39 Aligned_cols=109 Identities=12% Similarity=0.085 Sum_probs=61.4
Q ss_pred cHHHHHhcCCceeeeeeEEe----ecCCCCCccceeeCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHH
Q 027620 34 AVFPLQLLGYDVDPIHSVQF----SNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVE 109 (221)
Q Consensus 34 ~~~~l~~~gi~~~~v~~~~~----~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~ 109 (221)
..+.|+++|+++..+..+.. -...++..+.|+.-+++.+++. .+.+ ++.+++.. ++ .+....++.
T Consensus 415 va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~a--gi~~-----A~~vv~~~-~d---~~~n~~i~~ 483 (601)
T PRK03659 415 IGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAA--GAEK-----AEAIVITC-NE---PEDTMKIVE 483 (601)
T ss_pred HHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhc--CCcc-----CCEEEEEe-CC---HHHHHHHHH
Confidence 56789999998755543310 0122444455766555444443 3333 34344332 22 344455667
Q ss_pred HHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcC
Q 027620 110 KLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTG 165 (221)
Q Consensus 110 ~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g 165 (221)
.+|+.+|+.+++.=. .+++..+.+++ ..+|.+.|...|.....+
T Consensus 484 ~~r~~~p~~~IiaRa---------~~~~~~~~L~~---~Ga~~vv~e~~es~l~l~ 527 (601)
T PRK03659 484 LCQQHFPHLHILARA---------RGRVEAHELLQ---AGVTQFSRETFSSALELG 527 (601)
T ss_pred HHHHHCCCCeEEEEe---------CCHHHHHHHHh---CCCCEEEccHHHHHHHHH
Confidence 778777887776643 23444454443 389999998888665443
No 111
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=49.62 E-value=1.8e+02 Score=25.57 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=35.0
Q ss_pred eCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHH
Q 027620 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE 144 (221)
Q Consensus 66 ~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~ 144 (221)
.++.+++.++++.+..... ..+.++|=-| .....+.++++.++++ +..+.+.. .|. +++++.++.+.+
T Consensus 45 ~~~~e~~~~ii~~~~~~g~--~~v~~~GGEP--ll~~~~~~il~~~~~~--g~~~~i~T----NG~-ll~~~~~~~L~~ 112 (378)
T PRK05301 45 ELSTEEWIRVLREARALGA--LQLHFSGGEP--LLRKDLEELVAHAREL--GLYTNLIT----SGV-GLTEARLAALKD 112 (378)
T ss_pred CCCHHHHHHHHHHHHHcCC--cEEEEECCcc--CCchhHHHHHHHHHHc--CCcEEEEC----CCc-cCCHHHHHHHHH
Confidence 4666677666665554432 2233444322 2233355777777776 65555544 343 244555555544
No 112
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=49.10 E-value=1.8e+02 Score=25.34 Aligned_cols=69 Identities=10% Similarity=0.091 Sum_probs=35.5
Q ss_pred eeCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHH
Q 027620 65 QVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE 144 (221)
Q Consensus 65 ~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~ 144 (221)
..++.+++.++++.+..... ..+.++|=-| ....-+.++++.++++ +..+.+-. .|. +++++.++.+.+
T Consensus 35 ~~l~~e~~~~ii~~~~~~g~--~~v~~~GGEP--ll~~~~~~ii~~~~~~--g~~~~l~T----NG~-ll~~e~~~~L~~ 103 (358)
T TIGR02109 35 AELTTEEWTDVLTQAAELGV--LQLHFSGGEP--LARPDLVELVAHARRL--GLYTNLIT----SGV-GLTEARLDALAD 103 (358)
T ss_pred CCCCHHHHHHHHHHHHhcCC--cEEEEeCccc--cccccHHHHHHHHHHc--CCeEEEEe----CCc-cCCHHHHHHHHh
Confidence 35666777776666654432 1233444322 2233355677777776 65555444 332 344555555543
No 113
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=48.33 E-value=21 Score=27.98 Aligned_cols=100 Identities=18% Similarity=0.090 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEE-cccccCCCCCCCchhHHHHHHHhcCC
Q 027620 70 QQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVC-DPVMGDEGKLYVPSELVSVYREKVVP 148 (221)
Q Consensus 70 ~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvl-Dp~~~~~g~~~~~~~~~~~l~~~ll~ 148 (221)
+-+..+++...... ..+.++|. + .+...++.+.+++++|+..++- .+-+.+. -..++..+.+++ .
T Consensus 35 dl~~~l~~~~~~~~---~~ifllG~--~---~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~---~~~~~i~~~I~~---~ 100 (172)
T PF03808_consen 35 DLFPDLLRRAEQRG---KRIFLLGG--S---EEVLEKAAANLRRRYPGLRIVGYHHGYFDE---EEEEAIINRINA---S 100 (172)
T ss_pred HHHHHHHHHHHHcC---CeEEEEeC--C---HHHHHHHHHHHHHHCCCeEEEEecCCCCCh---hhHHHHHHHHHH---c
Confidence 34455555555442 23456664 2 3556677788888899988763 2211111 012333444433 4
Q ss_pred CceEEecCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCeEEEeeee
Q 027620 149 VASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSIN 195 (221)
Q Consensus 149 ~~dvi~pN~~Ea~~l~g~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~ 195 (221)
.+|++.. -+|.+ .-+..+.++.++....++++.|.
T Consensus 101 ~pdiv~v-------glG~P-----kQE~~~~~~~~~l~~~v~i~vG~ 135 (172)
T PF03808_consen 101 GPDIVFV-------GLGAP-----KQERWIARHRQRLPAGVIIGVGG 135 (172)
T ss_pred CCCEEEE-------ECCCC-----HHHHHHHHHHHHCCCCEEEEECc
Confidence 7787754 23332 11233444443333337788777
No 114
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=48.24 E-value=72 Score=25.97 Aligned_cols=57 Identities=7% Similarity=0.021 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHhcCcccccEEEEeecCCh--hHHHHHHHHHHHHHhcCCCCeEEEccccc
Q 027620 67 LNGQQLCDLIEGLEANNLLYYTHLLTGYIGSV--SFLNTILQVVEKLRSINPNLIYVCDPVMG 127 (221)
Q Consensus 67 l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~--~~~~~i~~~i~~ak~~~~~~~vvlDp~~~ 127 (221)
.+.++++.+.+++.....+..+++..|.|-.. ...+...++++.++ +.++.|.-...
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~~tFHRAfD 124 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAG----GMPVTFHRAFD 124 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHT----TSEEEE-GGGG
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcC----CCeEEEeCcHH
Confidence 46788888888776665556788889988533 23677788888775 56898876543
No 115
>TIGR03586 PseI pseudaminic acid synthase.
Probab=47.11 E-value=1.3e+02 Score=26.40 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHH------HHHh--cCCCC---
Q 027620 100 FLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFE------AEQL--TGFRI--- 168 (221)
Q Consensus 100 ~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~E------a~~l--~g~~~--- 168 (221)
+.+...++.+.+++. |+.++-.| ++.+..+.+.+ + .+++++.--.| ++.+ +|.++
T Consensus 75 ~~e~~~~L~~~~~~~--Gi~~~stp---------fd~~svd~l~~-~--~v~~~KI~S~~~~n~~LL~~va~~gkPvils 140 (327)
T TIGR03586 75 PWEWHKELFERAKEL--GLTIFSSP---------FDETAVDFLES-L--DVPAYKIASFEITDLPLIRYVAKTGKPIIMS 140 (327)
T ss_pred CHHHHHHHHHHHHHh--CCcEEEcc---------CCHHHHHHHHH-c--CCCEEEECCccccCHHHHHHHHhcCCcEEEE
Confidence 356667788888888 98888887 34444444332 2 25555544332 2222 33332
Q ss_pred ---CCHHHHHHHHHHHHHcCCCeEEE
Q 027620 169 ---GSEADGREACKILHAAGPAKVVI 191 (221)
Q Consensus 169 ---~s~~~~~~a~~~L~~~G~~~VvV 191 (221)
.+.+++..++..+.+.|.+.+++
T Consensus 141 tG~~t~~Ei~~Av~~i~~~g~~~i~L 166 (327)
T TIGR03586 141 TGIATLEEIQEAVEACREAGCKDLVL 166 (327)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCcEEE
Confidence 57899999999999888866665
No 116
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=47.05 E-value=34 Score=28.76 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHcCCCeEEEeeee
Q 027620 172 ADGREACKILHAAGPAKVVITSIN 195 (221)
Q Consensus 172 ~~~~~a~~~L~~~G~~~VvVT~G~ 195 (221)
++.+++++.+.+.+.+.|++|.|.
T Consensus 116 ~~~~eA~~~l~~~~~~~iflttGs 139 (249)
T PF02571_consen 116 DSYEEAAELLKELGGGRIFLTTGS 139 (249)
T ss_pred CCHHHHHHHHhhcCCCCEEEeCch
Confidence 567777777777777889999988
No 117
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=46.99 E-value=48 Score=27.13 Aligned_cols=70 Identities=20% Similarity=0.294 Sum_probs=41.0
Q ss_pred cCCceeeeeeEEeecCCCCCccceeeCCHHHHHHHHHHHHhcCccccc-EEEEeecCChhHHHHHHHHHHHHHhcCCCCe
Q 027620 41 LGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYT-HLLTGYIGSVSFLNTILQVVEKLRSINPNLI 119 (221)
Q Consensus 41 ~gi~~~~v~~~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~-~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~ 119 (221)
.|...++++.+. .++.+...+.|.++ ++++++.+.++.+ .| .+.+||+ . +..+.+++++ ++.
T Consensus 8 AG~gsR~~plT~-~tpK~LlkV~g~pl----IErqI~~L~e~gI--~dI~IVvGYl-----k----E~FeYLkdKy-~vt 70 (231)
T COG4750 8 AGLGSRFVPLTQ-STPKSLLKVNGEPL----IERQIEQLREAGI--DDITIVVGYL-----K----EQFEYLKDKY-DVT 70 (231)
T ss_pred cccccccccccc-cCChHHHHhcCccc----HHHHHHHHHHCCC--ceEEEEeeeh-----H----HHHHHHHHhc-CeE
Confidence 344445554332 24445444456655 4566666776664 33 4678986 2 2355666544 799
Q ss_pred EEEccccc
Q 027620 120 YVCDPVMG 127 (221)
Q Consensus 120 vvlDp~~~ 127 (221)
++++|..+
T Consensus 71 LvyN~kY~ 78 (231)
T COG4750 71 LVYNPKYR 78 (231)
T ss_pred EEeCchHH
Confidence 99999765
No 118
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=45.53 E-value=1.6e+02 Score=25.93 Aligned_cols=104 Identities=14% Similarity=0.202 Sum_probs=55.0
Q ss_pred eCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHh
Q 027620 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREK 145 (221)
Q Consensus 66 ~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ 145 (221)
.++++++.++....+.... +-.+-+|. ++...+.+.++++.--. ++ .|++|+.-..+ -.--+..+.+++
T Consensus 65 K~~~E~~~sfvrk~k~~~L--~v~~SvG~--t~e~~~r~~~lv~a~~~--~d-~i~~D~ahg~s---~~~~~~i~~i~~- 133 (321)
T TIGR01306 65 RFDEESRIPFIKDMQERGL--FASISVGV--KACEYEFVTQLAEEALT--PE-YITIDIAHGHS---NSVINMIKHIKT- 133 (321)
T ss_pred cCCHHHHHHHHHhcccccc--EEEEEcCC--CHHHHHHHHHHHhcCCC--CC-EEEEeCccCch---HHHHHHHHHHHH-
Confidence 4567777776555443321 11222233 22233333333332100 12 48889853321 112344666776
Q ss_pred cCCCceEEecCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCeEEEeeee
Q 027620 146 VVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSIN 195 (221)
Q Consensus 146 ll~~~dvi~pN~~Ea~~l~g~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~ 195 (221)
.++.+.++..|-. + .+.++.|.+.|+..|.|..|.
T Consensus 134 ~~p~~~vi~GnV~-----------t----~e~a~~l~~aGad~I~V~~G~ 168 (321)
T TIGR01306 134 HLPDSFVIAGNVG-----------T----PEAVRELENAGADATKVGIGP 168 (321)
T ss_pred hCCCCEEEEecCC-----------C----HHHHHHHHHcCcCEEEECCCC
Confidence 6788889888742 1 234667778899999888665
No 119
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.48 E-value=1.5e+02 Score=23.52 Aligned_cols=84 Identities=23% Similarity=0.283 Sum_probs=50.5
Q ss_pred EEEEeecCChhHHHHHHHHHHHHHhcCCCCeE-EEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCC
Q 027620 89 HLLTGYIGSVSFLNTILQVVEKLRSINPNLIY-VCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFR 167 (221)
Q Consensus 89 ~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~v-vlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~ 167 (221)
.+++|.++-+ -..++++..+|+.+|...+ ++-|-- ..|..| .+.....+.. .+..+|.+ ..++..+
T Consensus 46 ~litGqLG~E---~WA~Evv~eLk~eyp~ik~avitpFe-~q~~~W-nE~nq~ky~~-~l~~aD~v-------~~i~~~~ 112 (180)
T COG4474 46 VLITGQLGFE---LWAAEVVIELKEEYPHIKLAVITPFE-EQGKNW-NEDNQMKYAR-ILKAADFV-------KSITERP 112 (180)
T ss_pred EEEeccccHH---HHHHHHHHHHHhhCCCeeEEEEechh-hhcccc-CchhHHHHHH-HHhhhhhh-------hhhccCC
Confidence 4788877532 2345667777777786664 444532 233334 3444444443 66666665 3466666
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 027620 168 IGSEADGREACKILHAAG 185 (221)
Q Consensus 168 ~~s~~~~~~a~~~L~~~G 185 (221)
..++...++.-+.++++.
T Consensus 113 YesPaQf~q~nqf~le~s 130 (180)
T COG4474 113 YESPAQFRQYNQFLLEKS 130 (180)
T ss_pred ccCHHHHHHhhhhhhccC
Confidence 778888888777777664
No 120
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=44.91 E-value=89 Score=22.43 Aligned_cols=78 Identities=6% Similarity=0.049 Sum_probs=40.1
Q ss_pred eCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCC-CCeEEEcccccCCCCCCCchhHHHHHHH
Q 027620 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINP-NLIYVCDPVMGDEGKLYVPSELVSVYRE 144 (221)
Q Consensus 66 ~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~-~~~vvlDp~~~~~g~~~~~~~~~~~l~~ 144 (221)
.++++++.+.+.. . .+++|.+... .......+.++++.+|+..| ++++++==.. ... . .+.++
T Consensus 36 ~~~~~~l~~~~~~---~---~pdvV~iS~~-~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~------~~~-~-~~~~~- 99 (119)
T cd02067 36 DVPPEEIVEAAKE---E---DADAIGLSGL-LTTHMTLMKEVIEELKEAGLDDIPVLVGGAI------VTR-D-FKFLK- 99 (119)
T ss_pred CCCHHHHHHHHHH---c---CCCEEEEecc-ccccHHHHHHHHHHHHHcCCCCCeEEEECCC------CCh-h-HHHHH-
Confidence 3555555554332 2 2454444332 23446777788888888755 5555543211 111 0 11222
Q ss_pred hcCCCceEEecCHHHHH
Q 027620 145 KVVPVASMLTPNQFEAE 161 (221)
Q Consensus 145 ~ll~~~dvi~pN~~Ea~ 161 (221)
...+|.+..+..++-
T Consensus 100 --~~G~D~~~~~~~~~~ 114 (119)
T cd02067 100 --EIGVDAYFGPATEAV 114 (119)
T ss_pred --HcCCeEEECCHHHHH
Confidence 236788888777553
No 121
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=44.73 E-value=1.4e+02 Score=28.84 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=18.8
Q ss_pred CHHHHHHhcCCCCCCHHHHHHHHHHHHHc
Q 027620 156 NQFEAEQLTGFRIGSEADGREACKILHAA 184 (221)
Q Consensus 156 N~~Ea~~l~g~~~~s~~~~~~a~~~L~~~ 184 (221)
+.++++.++|.+ .+++.++++.+.+.
T Consensus 242 tpe~v~~itGvp---~e~I~~~A~~~a~a 267 (649)
T cd02752 242 TPEEVEDICGVP---KEDFLKVAEMFAAT 267 (649)
T ss_pred CHHHHHHHHCcC---HHHHHHHHHHHHhc
Confidence 356677788864 56788888888765
No 122
>PRK08508 biotin synthase; Provisional
Probab=43.82 E-value=2e+02 Score=24.35 Aligned_cols=110 Identities=13% Similarity=0.076 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhc
Q 027620 67 LNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKV 146 (221)
Q Consensus 67 l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~l 146 (221)
++++++.+..........-.+..+-.|.-.++...+.+.++++.+|++.|++.+..- .| +.+++.++.+++
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s-----~G--~~~~e~l~~Lk~-- 110 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIAC-----NG--TASVEQLKELKK-- 110 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEec-----CC--CCCHHHHHHHHH--
Confidence 577777776555544332111111233323444578888999999887454433221 22 234555555544
Q ss_pred CCCceEEecCHHHHHHhcCCCC--CCHHHHHHHHHHHHHcCC
Q 027620 147 VPVASMLTPNQFEAEQLTGFRI--GSEADGREACKILHAAGP 186 (221)
Q Consensus 147 l~~~dvi~pN~~Ea~~l~g~~~--~s~~~~~~a~~~L~~~G~ 186 (221)
..+|-+..|.+=...++.... .+.++..+..+...+.|.
T Consensus 111 -aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi 151 (279)
T PRK08508 111 -AGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGL 151 (279)
T ss_pred -cCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCC
Confidence 356777666554555543321 234555555555566663
No 123
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=42.55 E-value=55 Score=27.72 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHcCCCeEEEeeeeeC
Q 027620 172 ADGREACKILHAAGPAKVVITSINID 197 (221)
Q Consensus 172 ~~~~~a~~~L~~~G~~~VvVT~G~~~ 197 (221)
++.+++++.+.+.| +.|++|.|.-+
T Consensus 115 ~d~~ea~~~~~~~~-~rVflt~G~~~ 139 (257)
T COG2099 115 ADIEEAAEAAKQLG-RRVFLTTGRQN 139 (257)
T ss_pred cCHHHHHHHHhccC-CcEEEecCccc
Confidence 45566665555554 78999999844
No 124
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=42.55 E-value=1.9e+02 Score=23.68 Aligned_cols=109 Identities=11% Similarity=0.047 Sum_probs=56.4
Q ss_pred eeeCCHHHHHHHHHHHHhc-Cccccc-EEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHH
Q 027620 64 GQVLNGQQLCDLIEGLEAN-NLLYYT-HLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSV 141 (221)
Q Consensus 64 G~~l~~~~i~~~l~~i~~~-~~l~~~-~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~ 141 (221)
+..++.+++-+.+...... .. ..+ ++++|=-|. ...+.+.++++.+++. |..+.++. +|.....++..+.
T Consensus 48 ~~~lt~eei~~~i~~~~~~~~~-~~~~V~~sGGEPl-l~~~~~~~l~~~~k~~--g~~i~l~T----NG~~~~~~~~~~~ 119 (246)
T PRK11145 48 GKEVTVEELMKEVVTYRHFMNA-SGGGVTASGGEAI-LQAEFVRDWFRACKKE--GIHTCLDT----NGFVRRYDPVIDE 119 (246)
T ss_pred CeEcCHHHHHHHHHHhHHHHhc-CCCeEEEeCccHh-cCHHHHHHHHHHHHHc--CCCEEEEC----CCCCCcchHHHHH
Confidence 4467777776554433211 00 012 345663321 2356677899999988 88888887 4432111233333
Q ss_pred HHHhcCCCceEEec-----CHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCC
Q 027620 142 YREKVVPVASMLTP-----NQFEAEQLTGFRIGSEADGREACKILHAAGPA 187 (221)
Q Consensus 142 l~~~ll~~~dvi~p-----N~~Ea~~l~g~~~~s~~~~~~a~~~L~~~G~~ 187 (221)
+++.+|.+.. +++....+.|.. .+.+.+..+.+.+.|.+
T Consensus 120 ----ll~~~d~v~islk~~~~e~~~~~~g~~---~~~~l~~i~~l~~~g~~ 163 (246)
T PRK11145 120 ----LLDVTDLVMLDLKQMNDEIHQNLVGVS---NHRTLEFARYLAKRNQK 163 (246)
T ss_pred ----HHHhCCEEEECCCcCChhhcccccCCC---hHHHHHHHHHHHhCCCc
Confidence 4444555433 333334455542 23455556667777754
No 125
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=41.66 E-value=2e+02 Score=27.51 Aligned_cols=108 Identities=17% Similarity=0.126 Sum_probs=58.6
Q ss_pred cHHHHHhcCCceeeeeeEE-e---ecCCCCCccceeeCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHH
Q 027620 34 AVFPLQLLGYDVDPIHSVQ-F---SNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVE 109 (221)
Q Consensus 34 ~~~~l~~~gi~~~~v~~~~-~---~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~ 109 (221)
..+.|++.|+++..+..+. + -...++..+.|+.-+++-+++. .+++ .+.+++.. .+ .+....++.
T Consensus 415 va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~a--gi~~-----A~~vvv~~-~d---~~~n~~i~~ 483 (621)
T PRK03562 415 VGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESA--GAAK-----AEVLINAI-DD---PQTSLQLVE 483 (621)
T ss_pred HHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhc--CCCc-----CCEEEEEe-CC---HHHHHHHHH
Confidence 5678999999876554331 0 0123454456766555444442 3333 34344432 22 345556777
Q ss_pred HHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhc
Q 027620 110 KLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLT 164 (221)
Q Consensus 110 ~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~ 164 (221)
.+|+.+|+.+++.=. .+.+..+.+++ ..+|.+.+-..|.....
T Consensus 484 ~ar~~~p~~~iiaRa---------~d~~~~~~L~~---~Gad~v~~e~~e~sl~l 526 (621)
T PRK03562 484 LVKEHFPHLQIIARA---------RDVDHYIRLRQ---AGVEKPERETFEGALKS 526 (621)
T ss_pred HHHHhCCCCeEEEEE---------CCHHHHHHHHH---CCCCEEehhhHhHHHHH
Confidence 888888887765532 12333343333 36888877776654443
No 126
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=40.15 E-value=1.7e+02 Score=22.43 Aligned_cols=79 Identities=13% Similarity=0.150 Sum_probs=49.5
Q ss_pred eeeCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHH
Q 027620 64 GQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYR 143 (221)
Q Consensus 64 G~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~ 143 (221)
|..++.+++.+.+..+... + ..++++|= |.+.+.+.++++.+|++ |.++.++.+. ..++.. .
T Consensus 43 g~~lt~eel~~~I~~~~~~--~-~gVt~SGG---El~~~~l~~ll~~lk~~--Gl~i~l~Tg~-------~~~~~~---~ 104 (147)
T TIGR02826 43 GTKLTPEYLTKTLDKYRSL--I-SCVLFLGG---EWNREALLSLLKIFKEK--GLKTCLYTGL-------EPKDIP---L 104 (147)
T ss_pred CcCCCHHHHHHHHHHhCCC--C-CEEEEech---hcCHHHHHHHHHHHHHC--CCCEEEECCC-------CCHHHH---H
Confidence 4567777776665554311 1 12456663 34567888999999998 8899998742 112211 2
Q ss_pred HhcCCCceEEecCHHHHH
Q 027620 144 EKVVPVASMLTPNQFEAE 161 (221)
Q Consensus 144 ~~ll~~~dvi~pN~~Ea~ 161 (221)
++++.+|+++....+.+
T Consensus 105 -~il~~iD~l~~g~y~~~ 121 (147)
T TIGR02826 105 -ELVQHLDYLKTGRWIHT 121 (147)
T ss_pred -HHHHhCCEEEEChHHHH
Confidence 36778899888776543
No 127
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=39.96 E-value=1.2e+02 Score=25.55 Aligned_cols=78 Identities=13% Similarity=0.145 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHH------HHHh--cCCCC----
Q 027620 101 LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFE------AEQL--TGFRI---- 168 (221)
Q Consensus 101 ~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~E------a~~l--~g~~~---- 168 (221)
.+-+..+-+.+++. |++++-+| ++.+..+.+. ..+|+++.--.+ +..+ +|.++
T Consensus 75 ~~gl~~l~~~~~~~--Gl~~~t~~---------~d~~~~~~l~----~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~ 139 (260)
T TIGR01361 75 EEGLKLLRRAADEH--GLPVVTEV---------MDPRDVEIVA----EYADILQIGARNMQNFELLKEVGKQGKPVLLKR 139 (260)
T ss_pred HHHHHHHHHHHHHh--CCCEEEee---------CChhhHHHHH----hhCCEEEECcccccCHHHHHHHhcCCCcEEEeC
Confidence 45555566667777 88888887 2333333332 235666543332 2222 34442
Q ss_pred --C-CHHHHHHHHHHHHHcCCCeEEEee
Q 027620 169 --G-SEADGREACKILHAAGPAKVVITS 193 (221)
Q Consensus 169 --~-s~~~~~~a~~~L~~~G~~~VvVT~ 193 (221)
. +.+++..+++.+.+.|.+.+++.-
T Consensus 140 G~~~t~~e~~~Ave~i~~~Gn~~i~l~~ 167 (260)
T TIGR01361 140 GMGNTIEEWLYAAEYILSSGNGNVILCE 167 (260)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 2 689999999999999987777643
No 128
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=39.63 E-value=1.6e+02 Score=24.02 Aligned_cols=64 Identities=20% Similarity=0.175 Sum_probs=37.9
Q ss_pred cccEEEEeecCC-hhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHH----hcCCCceEEecCH
Q 027620 86 YYTHLLTGYIGS-VSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE----KVVPVASMLTPNQ 157 (221)
Q Consensus 86 ~~~~v~~G~l~~-~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~----~ll~~~dvi~pN~ 157 (221)
.+++++.|.--- ....+++.++++.++++ +.+|++|-...+- +.+...+.+ ..-..+|.++.+-
T Consensus 25 ~v~~iKvG~~l~~~~G~~~l~~~i~~l~~~--~~~I~~D~K~~Di------g~t~~~~~~~~~~~~~~gaD~vTv~~ 93 (226)
T PF00215_consen 25 YVDIIKVGTPLFLAYGLEALPEIIEELKER--GKPIFLDLKLGDI------GNTVARYAEAGFAAFELGADAVTVHP 93 (226)
T ss_dssp GSSEEEEEHHHHHHHCHHHHHHHHHHHHHT--TSEEEEEEEE-SS------HHHHHHHHHSCHHHHTTTESEEEEEG
T ss_pred cceEEEEChHHHhcCChhhHHHHHHHHHHh--cCCEeeeeeeccc------chHHHHHHHHhhhhhcCCCcEEEEec
Confidence 367789886210 01123568899999998 7899999866543 222222221 1234788888753
No 129
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=39.59 E-value=2.9e+02 Score=25.02 Aligned_cols=111 Identities=12% Similarity=0.082 Sum_probs=56.6
Q ss_pred ceeeCCHHHHHHHHH-HHHhcCccccc-EEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEc-ccccCCCCCCCchhHH
Q 027620 63 KGQVLNGQQLCDLIE-GLEANNLLYYT-HLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCD-PVMGDEGKLYVPSELV 139 (221)
Q Consensus 63 ~G~~l~~~~i~~~l~-~i~~~~~l~~~-~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlD-p~~~~~g~~~~~~~~~ 139 (221)
.|..++++++-+.+. ++..... ..+ +.++|-= .+...+.+.++++.+|+. +.++.+. . +|..+.+++.+
T Consensus 50 ~g~~~t~~evl~ev~~d~~~~~~-~~ggVtisGGG-epl~~~~l~eLl~~lk~~--gi~taI~~T----nG~~l~~~e~~ 121 (404)
T TIGR03278 50 NGDFIPPQVVLGEVQTSLGFRTG-RDTKVTISGGG-DVSCYPELEELTKGLSDL--GLPIHLGYT----SGKGFDDPEIA 121 (404)
T ss_pred cCCcCCHHHHHHHHHHHHHHhcC-CCCEEEEECCc-ccccCHHHHHHHHHHHhC--CCCEEEeCC----CCcccCCHHHH
Confidence 456667666544433 3321110 122 2344431 233457788999999998 7788775 5 44334556666
Q ss_pred HHHHHhcCC--CceEEecCHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 027620 140 SVYREKVVP--VASMLTPNQFEAEQLTGFRIGSEADGREACKILHA 183 (221)
Q Consensus 140 ~~l~~~ll~--~~dvi~pN~~Ea~~l~g~~~~s~~~~~~a~~~L~~ 183 (221)
+.+.+.-+. ..++=..|.+-...++|.+ +.+.+.+..++|.+
T Consensus 122 ~~L~~~gld~v~iSvka~dpe~h~kl~G~~--~a~~ILe~L~~L~e 165 (404)
T TIGR03278 122 EFLIDNGVREVSFTVFATDPELRREWMKDP--TPEASLQCLRRFCE 165 (404)
T ss_pred HHHHHcCCCEEEEecccCCHHHHHHHhCCC--CHHHHHHHHHHHHh
Confidence 655441021 2333345555566667753 11344444444444
No 130
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=39.57 E-value=1.5e+02 Score=26.03 Aligned_cols=94 Identities=12% Similarity=0.055 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEcccccCC-C-----CCC---CchhHHHHHHHhcCC---CceEEec----CHHHHHHhc
Q 027620 101 LNTILQVVEKLRSINPNLIYVCDPVMGDE-G-----KLY---VPSELVSVYREKVVP---VASMLTP----NQFEAEQLT 164 (221)
Q Consensus 101 ~~~i~~~i~~ak~~~~~~~vvlDp~~~~~-g-----~~~---~~~~~~~~l~~~ll~---~~dvi~p----N~~Ea~~l~ 164 (221)
.+.++++-..|+.. +++.++.|...+. . ..+ .+....+++++ +-. .+|++|. |..=.+.+.
T Consensus 141 ~a~vervg~eC~a~--dipf~lE~ltY~~~~~d~~~~~yak~kP~~V~~a~ke-fs~~~~gvDVlKvEvPvn~~~veG~~ 217 (324)
T PRK12399 141 KAYIERIGSECVAE--DIPFFLEILTYDEKIADNGSVEYAKVKPHKVNEAMKV-FSKPRFGVDVLKVEVPVNMKYVEGFA 217 (324)
T ss_pred HHHHHHHHHHHHHC--CCCeEEEEeeccCcccccccHHHHhhChHHHHHHHHH-hccCCCCCcEEEEecccccccccccC
Confidence 45667777779988 9999998865431 1 001 13444566665 432 7999998 211111111
Q ss_pred -CCCCCCHHHHHHHHHHHHH-cCCCeEEEeeeeeC
Q 027620 165 -GFRIGSEADGREACKILHA-AGPAKVVITSINID 197 (221)
Q Consensus 165 -g~~~~s~~~~~~a~~~L~~-~G~~~VvVT~G~~~ 197 (221)
+..+-+.+++.+..+...+ .+.+.|+++.|...
T Consensus 218 ~~e~~yt~~eA~~~f~~~~~~~~~P~i~LSaGV~~ 252 (324)
T PRK12399 218 EGEVVYTKEEAAQHFKEQDAATHLPYIYLSAGVSA 252 (324)
T ss_pred cccccccHHHHHHHHHHHhhccCCCEEEEcCCCCH
Confidence 1112244555555554443 46788999988843
No 131
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=39.32 E-value=93 Score=29.36 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCC----CCCCHHHHHH
Q 027620 101 LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGF----RIGSEADGRE 176 (221)
Q Consensus 101 ~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~----~~~s~~~~~~ 176 (221)
.+.+.++...+++. |+.+|+-|-..+ ..+.+...--...+++-.|..|-...... ....+++.+.
T Consensus 305 ~~~l~~i~aqaqq~--G~~~VVGPLlK~---------nVe~L~~~~q~~i~vLALN~~~n~r~~~~~cyfaLSPEDEa~~ 373 (604)
T COG3107 305 AQPLDAILAQAQQD--GADFVVGPLLKP---------NVEALLASNQQPIPVLALNQPENSRNPAQLCYFALSPEDEARD 373 (604)
T ss_pred cccHHHHHHHHHhc--CCcEEeccccch---------hHHHHHhCcCCCCceeeecCCccccCcccceeeecChhHHHHH
Confidence 34455667777777 888888883321 12333221113578999998887653221 1234577899
Q ss_pred HHHHHHHcCCCeE--EEeeee
Q 027620 177 ACKILHAAGPAKV--VITSIN 195 (221)
Q Consensus 177 a~~~L~~~G~~~V--vVT~G~ 195 (221)
+++++.+.|..+. ++..++
T Consensus 374 AA~~l~~qG~R~plvlvPr~~ 394 (604)
T COG3107 374 AANHLWDQGKRNPLVLVPRND 394 (604)
T ss_pred HHHHHHHccccCceEEecchH
Confidence 9999998886544 455444
No 132
>PRK10867 signal recognition particle protein; Provisional
Probab=38.82 E-value=3.1e+02 Score=25.11 Aligned_cols=81 Identities=15% Similarity=0.245 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHhcCCCC-eEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCCHHHHHHH
Q 027620 99 SFLNTILQVVEKLRSINPNL-IYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREA 177 (221)
Q Consensus 99 ~~~~~i~~~i~~ak~~~~~~-~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s~~~~~~a 177 (221)
.+.+...++++.++.. +. .|++|...+.. .++...+.+.. ..+++.|++. ++=.+-.+.+++.+.
T Consensus 167 dp~~i~~~a~~~a~~~--~~DvVIIDTaGrl~----~d~~lm~eL~~----i~~~v~p~ev----llVlda~~gq~av~~ 232 (433)
T PRK10867 167 DPVDIAKAALEEAKEN--GYDVVIVDTAGRLH----IDEELMDELKA----IKAAVNPDEI----LLVVDAMTGQDAVNT 232 (433)
T ss_pred CHHHHHHHHHHHHHhc--CCCEEEEeCCCCcc----cCHHHHHHHHH----HHHhhCCCeE----EEEEecccHHHHHHH
Confidence 3456666677777664 33 69999955432 34444443332 2333344322 111111123456666
Q ss_pred HHHHH-HcCCCeEEEee
Q 027620 178 CKILH-AAGPAKVVITS 193 (221)
Q Consensus 178 ~~~L~-~~G~~~VvVT~ 193 (221)
++.+. ..+...+|+|.
T Consensus 233 a~~F~~~~~i~giIlTK 249 (433)
T PRK10867 233 AKAFNEALGLTGVILTK 249 (433)
T ss_pred HHHHHhhCCCCEEEEeC
Confidence 66666 46778899986
No 133
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.59 E-value=36 Score=31.88 Aligned_cols=77 Identities=10% Similarity=0.014 Sum_probs=42.4
Q ss_pred cHHHHHhcCCceeeeeeEEeecCCCCCccceeeCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHh
Q 027620 34 AVFPLQLLGYDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRS 113 (221)
Q Consensus 34 ~~~~l~~~gi~~~~v~~~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~ 113 (221)
-++.|+++||.+..+.+.+|+.-+.+..+..-.-+.+.++.+.+++.+.-.-.+-..++..+ ++..++++...+-+
T Consensus 59 ~VkeLRe~GvTlH~li~~dR~Pi~DVPAVYFV~Pt~eNid~i~~Dl~~~lY~~~ylNF~Ssi----~R~~LE~lA~~a~~ 134 (621)
T KOG1301|consen 59 RVKELREHGITLHLLITSDRDPIPDVPAVYFVSPTEENIDRIIQDLSKGLYDSYYLNFISSI----SRSLLEDLASAASE 134 (621)
T ss_pred cHHHHHhcCcEEEEeeccccCCCCCCCeEEEeCCchHhHHHHHHHHHHhhhhhheeeccccc----cHHHHHHHHHHHhh
Confidence 34679999999988876665443332222111224577888888886542211223344443 45555555555544
Q ss_pred c
Q 027620 114 I 114 (221)
Q Consensus 114 ~ 114 (221)
.
T Consensus 135 ~ 135 (621)
T KOG1301|consen 135 T 135 (621)
T ss_pred c
Confidence 3
No 134
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=37.65 E-value=2.1e+02 Score=26.22 Aligned_cols=87 Identities=15% Similarity=0.059 Sum_probs=44.9
Q ss_pred EEeecCChhHHHHHHHHHHHHHhcCCCCeE--EEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCC
Q 027620 91 LTGYIGSVSFLNTILQVVEKLRSINPNLIY--VCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRI 168 (221)
Q Consensus 91 ~~G~l~~~~~~~~i~~~i~~ak~~~~~~~v--vlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~ 168 (221)
+.|| ..-+.+.+..+++++.++ |+-| +||.--... .-+...++.++ .=..+...+. ++--++
T Consensus 89 lvGY--rhyaDDvVe~Fv~ka~~n--GidvfRiFDAlND~R----Nl~~ai~a~kk-~G~h~q~~i~-------YT~sPv 152 (472)
T COG5016 89 LVGY--RHYADDVVEKFVEKAAEN--GIDVFRIFDALNDVR----NLKTAIKAAKK-HGAHVQGTIS-------YTTSPV 152 (472)
T ss_pred cccc--cCCchHHHHHHHHHHHhc--CCcEEEechhccchh----HHHHHHHHHHh-cCceeEEEEE-------eccCCc
Confidence 4566 334467777788888777 6544 677511101 00222333333 1112222211 122234
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEee
Q 027620 169 GSEADGREACKILHAAGPAKVVITS 193 (221)
Q Consensus 169 ~s~~~~~~a~~~L~~~G~~~VvVT~ 193 (221)
.+.+--.+.+++|.++|+.+++|+-
T Consensus 153 Ht~e~yv~~akel~~~g~DSIciKD 177 (472)
T COG5016 153 HTLEYYVELAKELLEMGVDSICIKD 177 (472)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEeec
Confidence 4556666777888888888887764
No 135
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=37.54 E-value=62 Score=25.69 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEE
Q 027620 70 QQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVC 122 (221)
Q Consensus 70 ~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvl 122 (221)
+-+..+++...... ..+.+.|.- .+.+.++.+.+++++|+..++-
T Consensus 35 dl~~~l~~~~~~~~---~~vfllG~~-----~~v~~~~~~~l~~~yP~l~i~g 79 (177)
T TIGR00696 35 DLMEELCQRAGKEK---LPIFLYGGK-----PDVLQQLKVKLIKEYPKLKIVG 79 (177)
T ss_pred HHHHHHHHHHHHcC---CeEEEECCC-----HHHHHHHHHHHHHHCCCCEEEE
Confidence 34455555554332 234566652 3556677788888889987654
No 136
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=36.95 E-value=3e+02 Score=24.42 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCC-eEEEcccccCCCCCCCchhHHHHHHHh
Q 027620 67 LNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNL-IYVCDPVMGDEGKLYVPSELVSVYREK 145 (221)
Q Consensus 67 l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~-~vvlDp~~~~~g~~~~~~~~~~~l~~~ 145 (221)
++.+++.++........... -.+-+|. .+...+.+.++++. .+++ .+++|..-..+ -..-+.++.+|+
T Consensus 78 ~~~e~~~~~v~~~~~~~~~~-~~vsvG~--~~~d~er~~~L~~a----~~~~d~iviD~AhGhs---~~~i~~ik~ir~- 146 (343)
T TIGR01305 78 YSVDEWKAFATNSSPDCLQN-VAVSSGS--SDNDLEKMTSILEA----VPQLKFICLDVANGYS---EHFVEFVKLVRE- 146 (343)
T ss_pred CCHHHHHHHHHhhcccccce-EEEEecc--CHHHHHHHHHHHhc----CCCCCEEEEECCCCcH---HHHHHHHHHHHh-
Confidence 56677777655433322111 1233343 23334444444432 1122 47889853321 122445667776
Q ss_pred cCCCceEEecCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCeEEEeeee
Q 027620 146 VVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSIN 195 (221)
Q Consensus 146 ll~~~dvi~pN~~Ea~~l~g~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~ 195 (221)
.++...++.-|-.- .++ ++.|.+.|+..|.|..|+
T Consensus 147 ~~p~~~viaGNV~T-----------~e~----a~~Li~aGAD~ikVgiGp 181 (343)
T TIGR01305 147 AFPEHTIMAGNVVT-----------GEM----VEELILSGADIVKVGIGP 181 (343)
T ss_pred hCCCCeEEEecccC-----------HHH----HHHHHHcCCCEEEEcccC
Confidence 77888888766432 223 445667798888887665
No 137
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=36.88 E-value=1.8e+02 Score=25.96 Aligned_cols=81 Identities=7% Similarity=0.017 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHH------HHHh--cCCCC---
Q 027620 100 FLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFE------AEQL--TGFRI--- 168 (221)
Q Consensus 100 ~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~E------a~~l--~g~~~--- 168 (221)
..+-+..+.+.+++. |++++-+| ++....+.+. ..+|+++.--.+ +..+ +|.++
T Consensus 167 ~~e~l~~L~~~~~~~--Gl~~~t~v---------~d~~~~~~l~----~~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk 231 (360)
T PRK12595 167 GVEGLKILKQVADEY--GLAVISEI---------VNPADVEVAL----DYVDVIQIGARNMQNFELLKAAGRVNKPVLLK 231 (360)
T ss_pred CHHHHHHHHHHHHHc--CCCEEEee---------CCHHHHHHHH----HhCCeEEECcccccCHHHHHHHHccCCcEEEe
Confidence 346666667777888 98888887 2333334333 236666543333 2222 23332
Q ss_pred ----CCHHHHHHHHHHHHHcCCCeEEEee-ee
Q 027620 169 ----GSEADGREACKILHAAGPAKVVITS-IN 195 (221)
Q Consensus 169 ----~s~~~~~~a~~~L~~~G~~~VvVT~-G~ 195 (221)
.+.++...++.++.+.|.+.++++- |-
T Consensus 232 ~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~ 263 (360)
T PRK12595 232 RGLSATIEEFIYAAEYIMSQGNGQIILCERGI 263 (360)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEECCcc
Confidence 4789999999999999988888774 65
No 138
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=36.79 E-value=98 Score=23.69 Aligned_cols=59 Identities=15% Similarity=0.092 Sum_probs=36.4
Q ss_pred eeeCCHHHHHHHHHHHHhcCcccccEEEEeecCChh-HHHHHHHHHHHHHhcCCCCeEEEcc
Q 027620 64 GQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVS-FLNTILQVVEKLRSINPNLIYVCDP 124 (221)
Q Consensus 64 G~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~-~~~~i~~~i~~ak~~~~~~~vvlDp 124 (221)
|..++.++++++++.+..... .-.+.++|=-|.-. ..+.+.++++.+|++. +...+++.
T Consensus 43 g~~~~~~~~~~i~~~l~~~~~-~~gVt~sGGEPllq~~~~~l~~ll~~~k~~~-~~~~~~~~ 102 (154)
T TIGR02491 43 GKEFTEALEKEIIRDLNDNPL-IDGLTLSGGDPLYPRNVEELIELVKKIKAEF-PEKDIWLW 102 (154)
T ss_pred CCcCCHHHHHHHHHHHHhcCC-cCeEEEeChhhCCCCCHHHHHHHHHHHHHhC-CCCCEEEe
Confidence 567887888888887765531 11245666444322 2378888999998741 23455555
No 139
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=36.56 E-value=76 Score=24.82 Aligned_cols=103 Identities=12% Similarity=0.082 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCCHHHHHHHHHH
Q 027620 101 LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKI 180 (221)
Q Consensus 101 ~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s~~~~~~a~~~ 180 (221)
.+....+++.+.++ +.+|.|=-. ..+ .-+...+.+++ .++...++-. ..-.++ .++..+.++.
T Consensus 32 ~dl~~~ll~~~~~~--~~~v~llG~--~~~---~~~~~~~~l~~-~yp~l~i~g~----~~g~~~-----~~~~~~i~~~ 94 (171)
T cd06533 32 SDLMPALLELAAQK--GLRVFLLGA--KPE---VLEKAAERLRA-RYPGLKIVGY----HHGYFG-----PEEEEEIIER 94 (171)
T ss_pred HHHHHHHHHHHHHc--CCeEEEECC--CHH---HHHHHHHHHHH-HCCCcEEEEe----cCCCCC-----hhhHHHHHHH
Confidence 57777888888776 666655321 110 12344445665 6777777642 001122 2344447788
Q ss_pred HHHcCCCeEEEeeeeeCCcEEEEEeeccC-CCcceeecCCC
Q 027620 181 LHAAGPAKVVITSINIDGNLFLIGSHQKE-KVGPLCVKGLW 220 (221)
Q Consensus 181 L~~~G~~~VvVT~G~~~~~~~~~~~~~~~-~~~~~~~~~~~ 220 (221)
+.+.++..|+|-+|.=+-+.|..-+.++- .+-++|++|.|
T Consensus 95 I~~~~pdiv~vglG~PkQE~~~~~~~~~l~~~v~~~vG~~~ 135 (171)
T cd06533 95 INASGADILFVGLGAPKQELWIARHKDRLPVPVAIGVGGSF 135 (171)
T ss_pred HHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEeceee
Confidence 88999999999999944445554443332 23346888753
No 140
>PRK06354 pyruvate kinase; Provisional
Probab=36.46 E-value=3.9e+02 Score=25.59 Aligned_cols=132 Identities=13% Similarity=0.077 Sum_probs=77.0
Q ss_pred eeCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHH
Q 027620 65 QVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE 144 (221)
Q Consensus 65 ~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~ 144 (221)
+.++..+.+.+.-.++ . .+|.+...++.+......+.+.++..... ...++.-- ...+..+.+.+
T Consensus 174 p~ltekD~~di~f~~~-~---~vD~ia~SFVr~~~dv~~~r~~l~~~~~~--~~~iiaKI---------Et~eav~nlde 238 (590)
T PRK06354 174 PAITEKDREDLIFGLE-Q---GVDWIALSFVRNPSDVLEIRELIEEHNGK--HIPIIAKI---------EKQEAIDNIDA 238 (590)
T ss_pred CCCCHHHHHHHHHHHH-c---CCCEEEEcCCCCHHHHHHHHHHHHHhcCC--CceEEEEE---------CCHHHHHhHHH
Confidence 3677777777522222 2 46777777777655555555555322122 33444332 23555666666
Q ss_pred hcCCCceEEecCHHHHHHhcCCCCCCH-HHHHHHHHHHHHcCCCeEEEee---------------------eeeCCcEEE
Q 027620 145 KVVPVASMLTPNQFEAEQLTGFRIGSE-ADGREACKILHAAGPAKVVITS---------------------INIDGNLFL 202 (221)
Q Consensus 145 ~ll~~~dvi~pN~~Ea~~l~g~~~~s~-~~~~~a~~~L~~~G~~~VvVT~---------------------G~~~~~~~~ 202 (221)
++..+|-+..-..++..=.|.+ .. .-.++.++...+.|...++-|. .-+||....
T Consensus 239 -I~~~~DgImVaRGDLgve~g~e--~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~Dav 315 (590)
T PRK06354 239 -ILELCDGLMVARGDLGVEIPAE--EVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAV 315 (590)
T ss_pred -HHHhcCEEEEccchhhcccCcH--HHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEE
Confidence 7788999999888877655532 11 1122333444566765555442 334577788
Q ss_pred EEeeccCCCcce
Q 027620 203 IGSHQKEKVGPL 214 (221)
Q Consensus 203 ~~~~~~~~~~~~ 214 (221)
..+.+-+.|++|
T Consensus 316 MLS~ETA~G~yP 327 (590)
T PRK06354 316 MLSNETAAGDYP 327 (590)
T ss_pred EecccccCCCCH
Confidence 888888888875
No 141
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=35.82 E-value=61 Score=20.21 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=26.8
Q ss_pred EEEEeccCccCccchhh-cHHHHHhcCCceeeeee
Q 027620 17 VLSIQSHTVQGYVGNKS-AVFPLQLLGYDVDPIHS 50 (221)
Q Consensus 17 vl~i~~~~~~G~vG~d~-~~~~l~~~gi~~~~v~~ 50 (221)
++.+.+..+.+..|-.. .++.|.++|+++..+.+
T Consensus 2 ~i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 2 AIEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred EEEEeccccCcccCHHHHHHHHHHHcCCeEEEEec
Confidence 46777887888888666 66789999999988854
No 142
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=35.42 E-value=81 Score=19.25 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=21.9
Q ss_pred cCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCeEE
Q 027620 155 PNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVV 190 (221)
Q Consensus 155 pN~~Ea~~l~g~~~~s~~~~~~a~~~L~~~G~~~Vv 190 (221)
.+.+|+..|+|.+ .....++.|.++|...++
T Consensus 3 LT~~El~elTG~k-----~~~~Q~~~L~~~Gi~~~~ 33 (47)
T PF13986_consen 3 LTDEELQELTGYK-----RPSKQIRWLRRNGIPFVV 33 (47)
T ss_pred CCHHHHHHHHCCC-----CHHHHHHHHHHCCCeeEE
Confidence 5678999999985 334446677788876554
No 143
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=35.27 E-value=2e+02 Score=23.48 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCcccccEEEEe-ecCChhHHHHHHHHHHHHHhcCCCCeEEEccc
Q 027620 71 QLCDLIEGLEANNLLYYTHLLTG-YIGSVSFLNTILQVVEKLRSINPNLIYVCDPV 125 (221)
Q Consensus 71 ~i~~~l~~i~~~~~l~~~~v~~G-~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~ 125 (221)
++..+...+... ..|++++| +. +...+.+.++++.+|++ -++||++-|.
T Consensus 12 ~~~~ia~~v~~~---gtDaI~VGGS~--gvt~~~~~~~v~~ik~~-~~lPvilfp~ 61 (205)
T TIGR01769 12 EIEKIAKNAKDA---GTDAIMVGGSL--GIVESNLDQTVKKIKKI-TNLPVILFPG 61 (205)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCcC--CCCHHHHHHHHHHHHhh-cCCCEEEECC
Confidence 344443344433 25666664 53 33456667777888773 2678888774
No 144
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=35.11 E-value=2.2e+02 Score=22.20 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCCHHHHHHHHHH
Q 027620 101 LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKI 180 (221)
Q Consensus 101 ~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s~~~~~~a~~~ 180 (221)
.+.+.++++.+.++ +.++.|=-. ..+ .-++..+.+++ -++...++--.. |. -++++.++.++.
T Consensus 34 ~dl~~~l~~~~~~~--~~~ifllG~--~~~---~~~~~~~~l~~-~yP~l~ivg~~~-------g~--f~~~~~~~i~~~ 96 (172)
T PF03808_consen 34 SDLFPDLLRRAEQR--GKRIFLLGG--SEE---VLEKAAANLRR-RYPGLRIVGYHH-------GY--FDEEEEEAIINR 96 (172)
T ss_pred HHHHHHHHHHHHHc--CCeEEEEeC--CHH---HHHHHHHHHHH-HCCCeEEEEecC-------CC--CChhhHHHHHHH
Confidence 56666777777665 555544320 010 12344445555 566666652111 10 133556666777
Q ss_pred HHHcCCCeEEEeeeeeCCcEEEEEeeccCCCc--ceeecCCC
Q 027620 181 LHAAGPAKVVITSINIDGNLFLIGSHQKEKVG--PLCVKGLW 220 (221)
Q Consensus 181 L~~~G~~~VvVT~G~~~~~~~~~~~~~~~~~~--~~~~~~~~ 220 (221)
+.+.++..|+|-+|. +.+-.+...+...-.. ++|++|-|
T Consensus 97 I~~~~pdiv~vglG~-PkQE~~~~~~~~~l~~~v~i~vG~~~ 137 (172)
T PF03808_consen 97 INASGPDIVFVGLGA-PKQERWIARHRQRLPAGVIIGVGGAF 137 (172)
T ss_pred HHHcCCCEEEEECCC-CHHHHHHHHHHHHCCCCEEEEECchh
Confidence 777888888888888 4433333222222222 35777643
No 145
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=34.53 E-value=2.7e+02 Score=23.07 Aligned_cols=89 Identities=20% Similarity=0.158 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecC---H--------HHHHHhcCC
Q 027620 98 VSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPN---Q--------FEAEQLTGF 166 (221)
Q Consensus 98 ~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN---~--------~Ea~~l~g~ 166 (221)
+.-...=.+.++.+|+.+|+..|+-|..-.+.|... ...+ .-..+|+++.. . .|+.. +|.
T Consensus 37 pLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e----~~ma----~~aGAd~~tV~g~A~~~TI~~~i~~A~~-~~~ 107 (217)
T COG0269 37 PLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIE----ARMA----FEAGADWVTVLGAADDATIKKAIKVAKE-YGK 107 (217)
T ss_pred HHHHHhhHHHHHHHHHHCCCCeEEeeeeecchhHHH----HHHH----HHcCCCEEEEEecCCHHHHHHHHHHHHH-cCC
Confidence 333333446788888888999999998766555311 1111 23466666542 1 22222 122
Q ss_pred C----CCCHHHHHHHHHHHHHcCCCeEEEeeee
Q 027620 167 R----IGSEADGREACKILHAAGPAKVVITSIN 195 (221)
Q Consensus 167 ~----~~s~~~~~~a~~~L~~~G~~~VvVT~G~ 195 (221)
. ..+..+..+.++.+.+.|+..+++.+|-
T Consensus 108 ~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~ 140 (217)
T COG0269 108 EVQIDLIGVWDPEQRAKWLKELGVDQVILHRGR 140 (217)
T ss_pred eEEEEeecCCCHHHHHHHHHHhCCCEEEEEecc
Confidence 1 2233566666777777899989998887
No 146
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=33.57 E-value=80 Score=25.99 Aligned_cols=39 Identities=31% Similarity=0.314 Sum_probs=26.4
Q ss_pred ccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccC
Q 027620 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGD 128 (221)
Q Consensus 87 ~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~ 128 (221)
++.+++|+ +.-...=.++++.+++.+|+.+|++|-...+
T Consensus 29 v~~iKVG~---~L~~~~G~~~i~~lk~~~~~~~IflDlKl~D 67 (218)
T PRK13305 29 VDIVEAGT---ILCLNEGLGAVKALREQCPDKIIVADWKVAD 67 (218)
T ss_pred CCEEEECH---HHHHHhCHHHHHHHHHhCCCCEEEEEeeccc
Confidence 56788886 3333333456777777778889999976543
No 147
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=32.73 E-value=2.4e+02 Score=23.63 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHH------HHHh--cCCCC----
Q 027620 101 LNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFE------AEQL--TGFRI---- 168 (221)
Q Consensus 101 ~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~E------a~~l--~g~~~---- 168 (221)
.+...++.++++++ |+..+..| ++.+..+-+.+ + .++.+|.--.| ++.+ +|.++
T Consensus 55 ~e~~~~L~~~~~~~--gi~f~stp---------fd~~s~d~l~~-~--~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlST 120 (241)
T PF03102_consen 55 EEQHKELFEYCKEL--GIDFFSTP---------FDEESVDFLEE-L--GVPAYKIASGDLTNLPLLEYIAKTGKPVILST 120 (241)
T ss_dssp HHHHHHHHHHHHHT--T-EEEEEE----------SHHHHHHHHH-H--T-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-
T ss_pred HHHHHHHHHHHHHc--CCEEEECC---------CCHHHHHHHHH-c--CCCEEEeccccccCHHHHHHHHHhCCcEEEEC
Confidence 55666677777777 76666666 33444444332 1 34444433222 1222 33332
Q ss_pred --CCHHHHHHHHHHHHHcCCCeEEE
Q 027620 169 --GSEADGREACKILHAAGPAKVVI 191 (221)
Q Consensus 169 --~s~~~~~~a~~~L~~~G~~~VvV 191 (221)
.+.++++++.+.+.+.|...+++
T Consensus 121 G~stl~EI~~Av~~~~~~~~~~l~l 145 (241)
T PF03102_consen 121 GMSTLEEIERAVEVLREAGNEDLVL 145 (241)
T ss_dssp TT--HHHHHHHHHHHHHHCT--EEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 46788888888886666555544
No 148
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=32.47 E-value=1.1e+02 Score=27.38 Aligned_cols=73 Identities=22% Similarity=0.137 Sum_probs=44.9
Q ss_pred ccc-EEEEeecCCh-----hHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHH
Q 027620 86 YYT-HLLTGYIGSV-----SFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFE 159 (221)
Q Consensus 86 ~~~-~v~~G~l~~~-----~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~E 159 (221)
.+| +|++|..-.+ ...+-..++.+.+-+..+|+++=|.-.. +.+.+....++..++|++|=+=.|+.|
T Consensus 238 qPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlElaS------~~~~~l~~~i~h~VlPyVdSLGlNEQE 311 (478)
T KOG4184|consen 238 QPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELAS------MTNRELMSSIVHQVLPYVDSLGLNEQE 311 (478)
T ss_pred CCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHhH------HHHHHHHHHHHHHhhhhccccCCCHHH
Confidence 466 4666643322 2223334444444444456666555432 244566667777799999999999999
Q ss_pred HHHhc
Q 027620 160 AEQLT 164 (221)
Q Consensus 160 a~~l~ 164 (221)
+..|.
T Consensus 312 L~fL~ 316 (478)
T KOG4184|consen 312 LLFLT 316 (478)
T ss_pred HHHHH
Confidence 88775
No 149
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=32.39 E-value=2.8e+02 Score=24.42 Aligned_cols=74 Identities=14% Similarity=0.134 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHH------HHh--cCCCC---
Q 027620 100 FLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEA------EQL--TGFRI--- 168 (221)
Q Consensus 100 ~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea------~~l--~g~~~--- 168 (221)
+.+-..++.+.+++. |+.++-.| ++.+..+.+.+ + .+++++.--.|+ +.+ +|.++
T Consensus 74 ~~e~~~~L~~~~~~~--Gi~~~stp---------fd~~svd~l~~-~--~v~~~KIaS~~~~n~pLL~~~A~~gkPvilS 139 (329)
T TIGR03569 74 SEEDHRELKEYCESK--GIEFLSTP---------FDLESADFLED-L--GVPRFKIPSGEITNAPLLKKIARFGKPVILS 139 (329)
T ss_pred CHHHHHHHHHHHHHh--CCcEEEEe---------CCHHHHHHHHh-c--CCCEEEECcccccCHHHHHHHHhcCCcEEEE
Confidence 356677788888888 88887777 34444444332 1 356666544332 222 34332
Q ss_pred ---CCHHHHHHHHHHHHHcCCC
Q 027620 169 ---GSEADGREACKILHAAGPA 187 (221)
Q Consensus 169 ---~s~~~~~~a~~~L~~~G~~ 187 (221)
.+.+++..+++.+.+.|.+
T Consensus 140 tGmatl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 140 TGMATLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC
Confidence 4789999999999888875
No 150
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=32.37 E-value=1.7e+02 Score=23.10 Aligned_cols=50 Identities=8% Similarity=0.134 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEc
Q 027620 68 NGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCD 123 (221)
Q Consensus 68 ~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlD 123 (221)
+++.++++.+++.+++ +++..++-.+...+.+...++..+++- .+.+++.
T Consensus 44 ~~~~~~~~~~aia~AD-----ii~~smlF~ed~v~~l~~~L~~~r~~~-~a~i~~~ 93 (164)
T PF11965_consen 44 DPEALEECEAAIARAD-----IIFGSMLFIEDHVRPLLPALEARRDHC-PAMIIFE 93 (164)
T ss_pred ChHHHHHHHHHHHhCC-----EEEeehhhhHHHHHHHHHHHHHHHccC-CEEEEEc
Confidence 3566788888887665 467777777777888888888776542 3344444
No 151
>PF13941 MutL: MutL protein
Probab=31.10 E-value=4.3e+02 Score=24.45 Aligned_cols=80 Identities=9% Similarity=-0.074 Sum_probs=49.5
Q ss_pred CCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCC-CCCHHHHHHHHHHHHH-cCCCeEEEeee
Q 027620 117 NLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFR-IGSEADGREACKILHA-AGPAKVVITSI 194 (221)
Q Consensus 117 ~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~-~~s~~~~~~a~~~L~~-~G~~~VvVT~G 194 (221)
+..+++=+|.++.=..+..+..++++++-.++++- =-|..+.+..+++.. ..|+..+.++++.|.+ .+...++|=.|
T Consensus 178 ~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~Ii-~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~~~g~llvVDIG 256 (457)
T PF13941_consen 178 GKEVVITENVMPKIDVLNVEPAREAIREVFLRHII-QAKGLSKLREMVDGPIMPTPAAVLRAAELLAEGGIGDLLVVDIG 256 (457)
T ss_pred CCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHHHh-cCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcccCCEEEEEcc
Confidence 45566666655321123345667777763333333 568888888887655 4688999999988887 44455667665
Q ss_pred eeC
Q 027620 195 NID 197 (221)
Q Consensus 195 ~~~ 197 (221)
...
T Consensus 257 GAT 259 (457)
T PF13941_consen 257 GAT 259 (457)
T ss_pred Ccc
Confidence 533
No 152
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=30.86 E-value=2.4e+02 Score=21.52 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=44.0
Q ss_pred eeeCCHHHHHHHHHHHHhcCcccccEEEEeecCCh-hHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHH
Q 027620 64 GQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSV-SFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVY 142 (221)
Q Consensus 64 G~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~-~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l 142 (221)
|..++.+.++++++.+.....-...+.++|=-|-. ...+.+.++++.+|+..++..|.+ .+|..+ ++....
T Consensus 44 g~~~~~~~~~~il~~~~~~~~~~~gvt~sGGEPl~~~~~~~l~~l~~~~k~~~~~~~i~~-----~tGy~~--eel~~~- 115 (154)
T PRK11121 44 GHPFTKEMEDQIIADLNDTRIKRQGLSLSGGDPLHPQNVPDILKLVQRVKAECPGKDIWV-----WTGYKL--DELNAA- 115 (154)
T ss_pred CcccCHHHHHHHHHHHHHhCCCCCcEEEECCCccchhhHHHHHHHHHHHHHHCCCCCEEE-----ecCCCH--HHHHHH-
Confidence 44566666777777765443101234667754432 134778888888877544433422 144332 121111
Q ss_pred HHhcCCCceEEecC
Q 027620 143 REKVVPVASMLTPN 156 (221)
Q Consensus 143 ~~~ll~~~dvi~pN 156 (221)
...+++.+|+++--
T Consensus 116 ~~~~l~~~DvlvDG 129 (154)
T PRK11121 116 QRQVVDLIDVLVDG 129 (154)
T ss_pred HHHHHhhCCEEEec
Confidence 22366777766543
No 153
>PRK08445 hypothetical protein; Provisional
Probab=30.51 E-value=3.8e+02 Score=23.61 Aligned_cols=115 Identities=15% Similarity=0.073 Sum_probs=63.5
Q ss_pred eCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEE-Eccc----ccCCCCCCCchhHHH
Q 027620 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYV-CDPV----MGDEGKLYVPSELVS 140 (221)
Q Consensus 66 ~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vv-lDp~----~~~~g~~~~~~~~~~ 140 (221)
.++++++.+..+....... -..+++|-.+...+.+.+.++++.++++.|++.+. +-+. ....+. +..++..+
T Consensus 72 ~l~~eeI~~~~~~a~~~g~--~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~-~~~~e~L~ 148 (348)
T PRK08445 72 ILSFEEIDKKIEELLAIGG--TQILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISK-ISIKEVLE 148 (348)
T ss_pred eCCHHHHHHHHHHHHHcCC--CEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhC-CCHHHHHH
Confidence 4577888877666655432 23466654444566888899999999987766653 3332 011011 12255666
Q ss_pred HHHHhcCCCceEE------ecCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCC
Q 027620 141 VYREKVVPVASML------TPNQFEAEQLTGFRIGSEADGREACKILHAAGPA 187 (221)
Q Consensus 141 ~l~~~ll~~~dvi------~pN~~Ea~~l~g~~~~s~~~~~~a~~~L~~~G~~ 187 (221)
.+++. ..+-+ +-+..-...++... .+.++-.+..+.+.+.|.+
T Consensus 149 ~LkeA---Gl~~~~g~glE~~~d~v~~~~~pk~-~t~~~~i~~i~~a~~~Gi~ 197 (348)
T PRK08445 149 RLQAK---GLSSIPGAGAEILSDRVRDIIAPKK-LDSDRWLEVHRQAHLIGMK 197 (348)
T ss_pred HHHHc---CCCCCCCCceeeCCHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCe
Confidence 66653 33322 22222344444332 3445556777777777754
No 154
>PRK05826 pyruvate kinase; Provisional
Probab=30.38 E-value=4.5e+02 Score=24.38 Aligned_cols=128 Identities=10% Similarity=0.027 Sum_probs=73.3
Q ss_pred eCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHh
Q 027620 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREK 145 (221)
Q Consensus 66 ~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ 145 (221)
.++..+...+...++. .++.+...++.+....+.+.+.++.+... +..++.=- ...+..+.+.+
T Consensus 170 ~lte~D~~~i~~ald~----g~d~I~~sfV~saedv~~l~~~l~~~~~~--~~~iiakI---------Et~eav~nlde- 233 (465)
T PRK05826 170 ALTEKDKADIKFAAEQ----GVDYIAVSFVRSAEDVEEARRLLREAGCP--HAKIIAKI---------ERAEAVDNIDE- 233 (465)
T ss_pred CCChhhHHHHHHHHHC----CCCEEEECCCCCHHHHHHHHHHHHHcCCc--CceEEEEE---------cCHHHHHhHHH-
Confidence 5666666665333432 36678877776655555555444433221 23333221 23555667766
Q ss_pred cCCCceEEecCHHHHHHhcCCCCCCHHHHHHH----HHHHHHcCCCeEEEee---------------------eeeCCcE
Q 027620 146 VVPVASMLTPNQFEAEQLTGFRIGSEADGREA----CKILHAAGPAKVVITS---------------------INIDGNL 200 (221)
Q Consensus 146 ll~~~dvi~pN~~Ea~~l~g~~~~s~~~~~~a----~~~L~~~G~~~VvVT~---------------------G~~~~~~ 200 (221)
++..+|.+..-..++..=.|.+ ++..+ .+.-.+.|...++-|. .-+||..
T Consensus 234 I~~~~DgImIgrgDLg~elg~~-----~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D 308 (465)
T PRK05826 234 IIEASDGIMVARGDLGVEIPDE-----EVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTD 308 (465)
T ss_pred HHHHcCEEEECcchhhhhcCcH-----hHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCc
Confidence 7778999999888887666642 33333 2333455655444331 3345777
Q ss_pred EEEEeeccCCCcce
Q 027620 201 FLIGSHQKEKVGPL 214 (221)
Q Consensus 201 ~~~~~~~~~~~~~~ 214 (221)
....+.+-+.|++|
T Consensus 309 ~vmLS~ETA~G~yP 322 (465)
T PRK05826 309 AVMLSGETAAGKYP 322 (465)
T ss_pred EEEeccccccCcCH
Confidence 77888878888875
No 155
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=30.31 E-value=4.5e+02 Score=24.44 Aligned_cols=127 Identities=15% Similarity=0.096 Sum_probs=77.1
Q ss_pred eCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHh
Q 027620 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREK 145 (221)
Q Consensus 66 ~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ 145 (221)
.++..+.+.+.-.++ . .+|.+...++.+......+.+.++.+. ....++.-- ...+..+.+.+
T Consensus 171 ~ltekD~~di~f~~~-~---~vD~ia~SFV~~~~di~~~r~~l~~~~---~~~~iiakI---------Et~~av~nlde- 233 (480)
T cd00288 171 ALSEKDKADLRFGVE-Q---GVDMIFASFVRKASDVLEIREVLGEKG---KDIKIIAKI---------ENQEGVNNFDE- 233 (480)
T ss_pred CCCHHHHHHHHHHHH-c---CCCEEEECCCCCHHHHHHHHHHHHhcC---CCceEEEEE---------CCHHHHHhHHH-
Confidence 567777766532222 2 367777788777666666666665532 133343322 23555666666
Q ss_pred cCCCceEEecCHHHHHHhcCCCCCCHHHHHHH----HHHHHHcCCCeEEEee---------------------eeeCCcE
Q 027620 146 VVPVASMLTPNQFEAEQLTGFRIGSEADGREA----CKILHAAGPAKVVITS---------------------INIDGNL 200 (221)
Q Consensus 146 ll~~~dvi~pN~~Ea~~l~g~~~~s~~~~~~a----~~~L~~~G~~~VvVT~---------------------G~~~~~~ 200 (221)
++..+|.+..-..++..=.|. +++..+ .+.-.+.|...++-|. .-+||..
T Consensus 234 I~~~~DgImIargDLg~e~g~-----~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D 308 (480)
T cd00288 234 ILEASDGIMVARGDLGVEIPA-----EEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTD 308 (480)
T ss_pred HHHhcCEEEECcchhhhhcCh-----HHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCc
Confidence 777899999999988776664 333333 3334456765554442 3345777
Q ss_pred EEEEeeccCCCcce
Q 027620 201 FLIGSHQKEKVGPL 214 (221)
Q Consensus 201 ~~~~~~~~~~~~~~ 214 (221)
...++.+-+.|++|
T Consensus 309 ~vmLS~ETa~G~yP 322 (480)
T cd00288 309 CVMLSGETAKGKYP 322 (480)
T ss_pred EEEEechhcCCCCH
Confidence 78888888888775
No 156
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=29.04 E-value=3.7e+02 Score=23.02 Aligned_cols=47 Identities=17% Similarity=0.307 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcC---CCceEEecC
Q 027620 102 NTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVV---PVASMLTPN 156 (221)
Q Consensus 102 ~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll---~~~dvi~pN 156 (221)
.+++++++.+++. +.+|++|-...+ + +.+.+.+.+.++ -.+|.++.|
T Consensus 73 ~~l~~~i~~l~~~--g~~VilD~K~~D-----I-~nTv~~ya~a~~~~~~g~DavTVh 122 (278)
T PRK00125 73 AQLERTIAYLREA--GVLVIADAKRGD-----I-GSTAEAYAKAAFESPLEADAVTVS 122 (278)
T ss_pred hHHHHHHHHHHHC--CCcEEEEeecCC-----h-HHHHHHHHHHHhcCccCCcEEEEC
Confidence 4566789999988 899999986543 2 223333333355 258888887
No 157
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=28.99 E-value=1.8e+02 Score=25.13 Aligned_cols=26 Identities=23% Similarity=0.137 Sum_probs=16.4
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHcCC
Q 027620 158 FEAEQLTGFRIGSEADGREACKILHAAGP 186 (221)
Q Consensus 158 ~Ea~~l~g~~~~s~~~~~~a~~~L~~~G~ 186 (221)
+.++.++|.+ .+.++++++.+.+.+.
T Consensus 220 ~~~~~i~g~~---~~~i~~la~~~~~~~~ 245 (374)
T cd00368 220 EWAAEITGVP---AETIRALAREFAAAKR 245 (374)
T ss_pred HHHHHHHCCC---HHHHHHHHHHHHhCCC
Confidence 4455566653 4667888887776543
No 158
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=28.06 E-value=2.6e+02 Score=21.98 Aligned_cols=71 Identities=21% Similarity=0.187 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCCCe-EEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 027620 104 ILQVVEKLRSINPNLI-YVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILH 182 (221)
Q Consensus 104 i~~~i~~ak~~~~~~~-vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s~~~~~~a~~~L~ 182 (221)
+.++++.+++..|..+ |.++. . ..++..+++. ..+|+|..... ++++++++.+.+.
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv----~----~~ee~~ea~~----~g~d~I~lD~~-----------~~~~~~~~v~~l~ 122 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEV----E----NLEEAEEALE----AGADIIMLDNM-----------SPEDLKEAVEELR 122 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEE----S----SHHHHHHHHH----TT-SEEEEES------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEEEc----C----CHHHHHHHHH----hCCCEEEecCc-----------CHHHHHHHHHHHh
Confidence 3445566666555543 77775 2 1233333332 35666644322 5678888888877
Q ss_pred HcCCCeEEEeeeeeC
Q 027620 183 AAGPAKVVITSINID 197 (221)
Q Consensus 183 ~~G~~~VvVT~G~~~ 197 (221)
..+.+..+.-.|.+.
T Consensus 123 ~~~~~v~ie~SGGI~ 137 (169)
T PF01729_consen 123 ELNPRVKIEASGGIT 137 (169)
T ss_dssp HHTTTSEEEEESSSS
T ss_pred hcCCcEEEEEECCCC
Confidence 666654444444434
No 159
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=27.94 E-value=4.4e+02 Score=24.27 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=19.6
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHcCCCeEEEe
Q 027620 158 FEAEQLTGFRIGSEADGREACKILHAAGPAKVVIT 192 (221)
Q Consensus 158 ~Ea~~l~g~~~~s~~~~~~a~~~L~~~G~~~VvVT 192 (221)
++++.++|.+ .++++++|+.+.+.+...++..
T Consensus 256 e~~~~~tgv~---~~~I~~~A~~~a~~~~~~i~~g 287 (501)
T cd02766 256 EWAAEITGVS---AEEIEELARLYGEAKPPSIRLG 287 (501)
T ss_pred HHHHHHHCCC---HHHHHHHHHHHHhCCCcEEEec
Confidence 4556666764 5678888888776544334333
No 160
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=27.76 E-value=2.4e+02 Score=20.46 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=14.9
Q ss_pred ccEEEEeecCChhHHHHHHHHHHHHHhc
Q 027620 87 YTHLLTGYIGSVSFLNTILQVVEKLRSI 114 (221)
Q Consensus 87 ~~~v~~G~l~~~~~~~~i~~~i~~ak~~ 114 (221)
+++|.+.+. .+...+.+.++++.+++.
T Consensus 51 ~d~V~iS~~-~~~~~~~~~~~~~~L~~~ 77 (122)
T cd02071 51 VDVIGLSSL-SGGHMTLFPEVIELLREL 77 (122)
T ss_pred CCEEEEccc-chhhHHHHHHHHHHHHhc
Confidence 444443333 344556666777777665
No 161
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=27.72 E-value=4.3e+02 Score=23.34 Aligned_cols=94 Identities=15% Similarity=0.090 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEcccccCC-CC-----CC---CchhHHHHHHHhcCC---CceEEec----CHHHHHHhc
Q 027620 101 LNTILQVVEKLRSINPNLIYVCDPVMGDE-GK-----LY---VPSELVSVYREKVVP---VASMLTP----NQFEAEQLT 164 (221)
Q Consensus 101 ~~~i~~~i~~ak~~~~~~~vvlDp~~~~~-g~-----~~---~~~~~~~~l~~~ll~---~~dvi~p----N~~Ea~~l~ 164 (221)
.+.++++-..|+.. +++.++.|...+. .. .+ .+....+.+++ +.. .+|++|. |..=.+.+.
T Consensus 143 ~a~vervg~eC~a~--dipf~lE~l~Yd~~~~d~~~~eyak~kP~~V~~amke-fs~~~~gvDVlKvEvPvn~~~veG~~ 219 (329)
T PRK04161 143 QAYIERIGSECTAE--DIPFFLELLTYDERISDNNSAAYAKLKPHKVNGAMKV-FSDKRFGVDVLKVEVPVNMAYVEGFT 219 (329)
T ss_pred HHHHHHHHHHHHHC--CCCeEEEEeccCCcccccccHHHHhhChHHHHHHHHH-hccCCCCCcEEEEecccccccccccC
Confidence 45667777779998 9999998875431 10 01 12334566765 553 7999997 221111111
Q ss_pred -CCCCCCHHHHHHHHHHHHH-cCCCeEEEeeeeeC
Q 027620 165 -GFRIGSEADGREACKILHA-AGPAKVVITSINID 197 (221)
Q Consensus 165 -g~~~~s~~~~~~a~~~L~~-~G~~~VvVT~G~~~ 197 (221)
|...-|.+++.+..+...+ .+.+.|+++.|...
T Consensus 220 ~g~~~yt~~eA~~~f~~~~~~~~~P~i~LSaGV~~ 254 (329)
T PRK04161 220 EGEVVYSQEEAIKAFKDQEAATHLPYIYLSAGVSA 254 (329)
T ss_pred cccccccHHHHHHHHHHHhcccCCCEEEEcCCCCH
Confidence 1112244555555555443 46789999988843
No 162
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=26.88 E-value=2.1e+02 Score=23.28 Aligned_cols=86 Identities=8% Similarity=0.038 Sum_probs=45.7
Q ss_pred eeeCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHH
Q 027620 64 GQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYR 143 (221)
Q Consensus 64 G~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~ 143 (221)
|..++++++.+.....+ +++|.+..+ .........++++.+++..++++|++==.+ .+++..+.+.
T Consensus 123 G~~vp~e~~v~~~~~~~------~~~V~lS~~-~~~~~~~~~~~i~~L~~~~~~~~i~vGG~~-------~~~~~~~~~~ 188 (213)
T cd02069 123 GVMVPIEKILEAAKEHK------ADIIGLSGL-LVPSLDEMVEVAEEMNRRGIKIPLLIGGAA-------TSRKHTAVKI 188 (213)
T ss_pred CCCCCHHHHHHHHHHcC------CCEEEEccc-hhccHHHHHHHHHHHHhcCCCCeEEEEChh-------cCHHHHhhhh
Confidence 55677777766544332 454433333 234466777888888877444554443211 2333322110
Q ss_pred HhcCCCceEEecCHHHHHHh
Q 027620 144 EKVVPVASMLTPNQFEAEQL 163 (221)
Q Consensus 144 ~~ll~~~dvi~pN~~Ea~~l 163 (221)
..-.-.+|....|..|+-.+
T Consensus 189 ~~~~~gad~y~~da~~~v~~ 208 (213)
T cd02069 189 APEYDGPVVYVKDASRALGV 208 (213)
T ss_pred ccccCCCceEecCHHHHHHH
Confidence 00123788888888877654
No 163
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=26.64 E-value=92 Score=28.82 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEcc
Q 027620 98 VSFLNTILQVVEKLRSINPNLIYVCDP 124 (221)
Q Consensus 98 ~~~~~~i~~~i~~ak~~~~~~~vvlDp 124 (221)
+.+.+.+.++-+.++++ |+++.+|-
T Consensus 200 pvslenlr~V~~la~~~--GIplhLDg 224 (467)
T TIGR02617 200 PVSLANLKAVYEIAKKY--DIPVVMDS 224 (467)
T ss_pred EeCHHHHHHHHHHHHHc--CCcEEEEh
Confidence 34578888888999999 99999997
No 164
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=26.56 E-value=3.3e+02 Score=22.54 Aligned_cols=82 Identities=18% Similarity=0.114 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEe--cCHHHHHHhcCCCCCCHHHHHHH
Q 027620 100 FLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLT--PNQFEAEQLTGFRIGSEADGREA 177 (221)
Q Consensus 100 ~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~--pN~~Ea~~l~g~~~~s~~~~~~a 177 (221)
+.+++.++++.+++. |..+.+|..-. +..++..+.+++ + .+|++. -+.+. +..|.+.. .+..+.
T Consensus 91 ~~~TI~~~i~~A~~~--~~~v~iDl~~~-----~~~~~~~~~l~~-~--gvd~~~~H~g~D~--q~~G~~~~--~~~l~~ 156 (217)
T COG0269 91 DDATIKKAIKVAKEY--GKEVQIDLIGV-----WDPEQRAKWLKE-L--GVDQVILHRGRDA--QAAGKSWG--EDDLEK 156 (217)
T ss_pred CHHHHHHHHHHHHHc--CCeEEEEeecC-----CCHHHHHHHHHH-h--CCCEEEEEecccH--hhcCCCcc--HHHHHH
Confidence 478888999999999 99999997321 112333333333 2 444443 33332 23665421 233444
Q ss_pred HHHHHHcCCCeEEEeeeee
Q 027620 178 CKILHAAGPAKVVITSINI 196 (221)
Q Consensus 178 ~~~L~~~G~~~VvVT~G~~ 196 (221)
.+++.+.|. .+-|++|=.
T Consensus 157 ik~~~~~g~-~vAVaGGI~ 174 (217)
T COG0269 157 IKKLSDLGA-KVAVAGGIT 174 (217)
T ss_pred HHHhhccCc-eEEEecCCC
Confidence 677777774 577888753
No 165
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=26.52 E-value=2.2e+02 Score=22.70 Aligned_cols=81 Identities=12% Similarity=0.136 Sum_probs=44.8
Q ss_pred eeeCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCC--CCeEEEcccccCCCCCCCchhHHHH
Q 027620 64 GQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINP--NLIYVCDPVMGDEGKLYVPSELVSV 141 (221)
Q Consensus 64 G~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~--~~~vvlDp~~~~~g~~~~~~~~~~~ 141 (221)
|..++++++.+..... .++.|.+..+ .........++++.+|+..+ +++|++== .. +.++.
T Consensus 117 G~~~p~~~l~~~~~~~------~~d~v~lS~~-~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG------~~-~~~~~--- 179 (201)
T cd02070 117 GRDVPPEEFVEAVKEH------KPDILGLSAL-MTTTMGGMKEVIEALKEAGLRDKVKVMVGG------AP-VNQEF--- 179 (201)
T ss_pred CCCCCHHHHHHHHHHc------CCCEEEEecc-ccccHHHHHHHHHHHHHCCCCcCCeEEEEC------Cc-CCHHH---
Confidence 4556666666654333 2454433322 23345667788888888754 55555432 11 22322
Q ss_pred HHHhcCCCceEEecCHHHHHHhc
Q 027620 142 YREKVVPVASMLTPNQFEAEQLT 164 (221)
Q Consensus 142 l~~~ll~~~dvi~pN~~Ea~~l~ 164 (221)
.+ .+ .+|....|..++-.+.
T Consensus 180 -~~-~~-GaD~~~~da~~av~~~ 199 (201)
T cd02070 180 -AD-EI-GADGYAEDAAEAVAIA 199 (201)
T ss_pred -HH-Hc-CCcEEECCHHHHHHHH
Confidence 22 22 7899988888876653
No 166
>smart00642 Aamy Alpha-amylase domain.
Probab=26.27 E-value=80 Score=24.64 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEccccc
Q 027620 101 LNTILQVVEKLRSINPNLIYVCDPVMG 127 (221)
Q Consensus 101 ~~~i~~~i~~ak~~~~~~~vvlDp~~~ 127 (221)
.+...++++.|+++ |+.|++|-++.
T Consensus 69 ~~d~~~lv~~~h~~--Gi~vilD~V~N 93 (166)
T smart00642 69 MEDFKELVDAAHAR--GIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEECCC
Confidence 46677889999999 99999999875
No 167
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=26.27 E-value=34 Score=22.74 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeeeeCCcEEEE
Q 027620 166 FRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLI 203 (221)
Q Consensus 166 ~~~~s~~~~~~a~~~L~~~G~~~VvVT~G~~~~~~~~~ 203 (221)
....+++++....+.|..+|+...+...|..+|.....
T Consensus 25 ~~~~~~e~~~~f~~~L~~~Gv~~~L~~~G~~~GD~V~I 62 (69)
T TIGR03595 25 TPFNNDENLRRFARKLKKLGVEDALRKAGAKDGDTVRI 62 (69)
T ss_pred cCCCCHHHHHHHHHHHHHCCHHHHHHHcCCCCCCEEEE
Confidence 34567788888888888999988899999988876544
No 168
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=26.17 E-value=69 Score=25.59 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEeeee
Q 027620 170 SEADGREACKILHAAGPAKVVITSIN 195 (221)
Q Consensus 170 s~~~~~~a~~~L~~~G~~~VvVT~G~ 195 (221)
+++-++..++.+.+.|++.++|--+.
T Consensus 21 ~P~vv~avv~~l~~~g~~~i~i~e~~ 46 (206)
T PF04015_consen 21 HPEVVRAVVEMLKEAGAKEIIIAESP 46 (206)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEeCC
Confidence 34555555666666666655554443
No 169
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=25.95 E-value=1e+02 Score=26.66 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEeeeeeC
Q 027620 170 SEADGREACKILHAAGPAKVVITSINID 197 (221)
Q Consensus 170 s~~~~~~a~~~L~~~G~~~VvVT~G~~~ 197 (221)
+.+++.+.++.+.++|++.|++|.|..+
T Consensus 92 ~~eei~~~a~~~~~~GlkevvLTsv~~d 119 (302)
T TIGR00510 92 DPEEPAKLAETIKDMGLKYVVITSVDRD 119 (302)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeecCC
Confidence 4677888899999999999999998754
No 170
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=25.35 E-value=2.6e+02 Score=24.38 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=51.9
Q ss_pred EEEeccCccCccchhh--cH-HHHHhcCCceeeeeeEE----eecCCCCCcc---ceeeCCHHHHHHHHHHHHhcCc-cc
Q 027620 18 LSIQSHTVQGYVGNKS--AV-FPLQLLGYDVDPIHSVQ----FSNHTGYPTF---KGQVLNGQQLCDLIEGLEANNL-LY 86 (221)
Q Consensus 18 l~i~~~~~~G~vG~d~--~~-~~l~~~gi~~~~v~~~~----~~~~~~~~~~---~G~~l~~~~i~~~l~~i~~~~~-l~ 86 (221)
|...+.+-.|.+|--- .+ ..|.+.|++...++..+ ..+..+|... -|+.+++++.+++.+.. .| +.
T Consensus 73 ld~~~a~~~G~ig~~~~~al~~~l~~~~~~~~v~t~~t~~~V~~~dpaf~~ptKpiG~~y~~~~a~~~~~~~---g~~~~ 149 (308)
T cd04235 73 LDVCGAMSQGMIGYMLQQALDNELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEK---GWTFK 149 (308)
T ss_pred cchhcchhhHHHHHHHHHHHHHHHHHcCCCCceEEEEeEEEEcCCCccccCCCCCcCCCcCHHHHHHHHHHc---CCEEE
Confidence 3444455566666332 33 46898998765444332 1234455433 27788887777764431 11 00
Q ss_pred ccE--EEEeecCChhHHHHH-HHHHHHHHhcCCCCeEEEc
Q 027620 87 YTH--LLTGYIGSVSFLNTI-LQVVEKLRSINPNLIYVCD 123 (221)
Q Consensus 87 ~~~--v~~G~l~~~~~~~~i-~~~i~~ak~~~~~~~vvlD 123 (221)
-|+ =.==-+||+.|.+.+ .++++.+-++ +..+|+-
T Consensus 150 ~d~~~g~rrvV~SP~P~~iv~~~~I~~Ll~~--g~IpI~~ 187 (308)
T cd04235 150 EDAGRGYRRVVPSPKPKDIVEIEAIKTLVDN--GVIVIAA 187 (308)
T ss_pred EeCCCCceeeeCCCCCccccCHHHHHHHHHC--CCEEEEE
Confidence 000 000114677777766 3466655454 6555554
No 171
>PRK03673 hypothetical protein; Provisional
Probab=25.33 E-value=1.7e+02 Score=26.46 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=16.8
Q ss_pred ccCccchhh---cHHHHHhcCCceeeeeeE
Q 027620 25 VQGYVGNKS---AVFPLQLLGYDVDPIHSV 51 (221)
Q Consensus 25 ~~G~vG~d~---~~~~l~~~gi~~~~v~~~ 51 (221)
..|.+=+.. +.+.|++.|+++....++
T Consensus 14 l~G~i~dtN~~~la~~L~~~G~~v~~~~~v 43 (396)
T PRK03673 14 LHGQIVDTNAAWLADFFFHQGLPLSRRNTV 43 (396)
T ss_pred CCCeEEEhHHHHHHHHHHHCCCEEEEEEEc
Confidence 345554333 345699999988766544
No 172
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=25.30 E-value=5.3e+02 Score=23.56 Aligned_cols=54 Identities=15% Similarity=0.240 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHH-HHHHHHHHhcCCCCeEEE
Q 027620 67 LNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTI-LQVVEKLRSINPNLIYVC 122 (221)
Q Consensus 67 l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i-~~~i~~ak~~~~~~~vvl 122 (221)
-+.+++.+.++.+.+.. .+.++++-.++-....+.+ .-+++.+++..+++|+++
T Consensus 328 a~~~~v~~a~~ii~~d~--~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~~pivv 382 (422)
T PLN00124 328 ASEQQVVEAFKILTSDD--KVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVV 382 (422)
T ss_pred CCHHHHHHHHHHHhcCC--CCcEEEEEecCCccchHHHHHHHHHHHHhcCCCCcEEE
Confidence 35567777766554432 2334444222211122222 224444455444556655
No 173
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=25.21 E-value=4.4e+02 Score=23.47 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=43.9
Q ss_pred HHHHHH-HHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHH------Hh--cCCCC-------
Q 027620 105 LQVVEK-LRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAE------QL--TGFRI------- 168 (221)
Q Consensus 105 ~~~i~~-ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~------~l--~g~~~------- 168 (221)
.++++. .++. |.+++-+| ++.+..+.+. +++|++..-..++. .+ +|.++
T Consensus 154 l~~L~~~~~e~--Gl~~~tev---------~d~~~v~~~~----~~~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~ 218 (352)
T PRK13396 154 LELLAAAREAT--GLGIITEV---------MDAADLEKIA----EVADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMA 218 (352)
T ss_pred HHHHHHHHHHc--CCcEEEee---------CCHHHHHHHH----hhCCeEEECcccccCHHHHHHHHccCCeEEEeCCCC
Confidence 344444 4556 88888887 3344344333 34677765443322 22 23332
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEe
Q 027620 169 GSEADGREACKILHAAGPAKVVIT 192 (221)
Q Consensus 169 ~s~~~~~~a~~~L~~~G~~~VvVT 192 (221)
.+.++...+++++.+.|.+.+++.
T Consensus 219 ~t~ee~~~A~e~i~~~Gn~~viL~ 242 (352)
T PRK13396 219 ATIDEWLMAAEYILAAGNPNVILC 242 (352)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEE
Confidence 278999999999999888766654
No 174
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=25.05 E-value=1.5e+02 Score=19.78 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHcCCCeEEEeeeeeCC
Q 027620 171 EADGREACKILHAAGPAKVVITSINIDG 198 (221)
Q Consensus 171 ~~~~~~a~~~L~~~G~~~VvVT~G~~~~ 198 (221)
.+-+..+.+++++.-+..++|+.|+-+|
T Consensus 17 ~~~i~~~Ld~~~~~~~~~~lvhGga~~G 44 (71)
T PF10686_consen 17 HELIWAALDKVHARHPDMVLVHGGAPKG 44 (71)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCCCC
Confidence 3445555555565556667777776444
No 175
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=24.79 E-value=4.2e+02 Score=22.27 Aligned_cols=123 Identities=14% Similarity=0.147 Sum_probs=70.7
Q ss_pred eCCHHHHHHHHHHHHhcCcccccEEEEeecCC----hhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHH
Q 027620 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGS----VSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSV 141 (221)
Q Consensus 66 ~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~----~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~ 141 (221)
.+.+ ++...++.+.+.-. +-++|-+|-++. +...+...+=++.|++. ++|+++.. |+... .-..+...+.
T Consensus 76 ~iP~-e~~~~l~~L~~~l~-~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~e~--dvPviVHT-Pr~nK-~e~t~~ildi 149 (254)
T COG1099 76 AIPP-ELEEVLEELEELLS-NEDVVAIGEIGLEEATDEEKEVFREQLELAREL--DVPVIVHT-PRRNK-KEATSKILDI 149 (254)
T ss_pred CCCc-hHHHHHHHHHhhcc-cCCeeEeeecccccCCHHHHHHHHHHHHHHHHc--CCcEEEeC-CCCcc-hhHHHHHHHH
Confidence 3443 36666666654432 234567777662 33356667778889999 99999987 44221 1122444555
Q ss_pred HHHhcCCCceEE--ecCHHHHHHhcCCCC-------CCHHHHHHHHHHHHHcCCCeEEEeee
Q 027620 142 YREKVVPVASML--TPNQFEAEQLTGFRI-------GSEADGREACKILHAAGPAKVVITSI 194 (221)
Q Consensus 142 l~~~ll~~~dvi--~pN~~Ea~~l~g~~~-------~s~~~~~~a~~~L~~~G~~~VvVT~G 194 (221)
+.+.-++.-.++ ..|++-...+.+.+. ...-+..++++...+.|.+.+++..-
T Consensus 150 ~~~~~l~~~lvvIDH~N~etv~~vld~e~~vGlTvqPgKlt~~eAveIV~ey~~~r~ilnSD 211 (254)
T COG1099 150 LIESGLKPSLVVIDHVNEETVDEVLDEEFYVGLTVQPGKLTVEEAVEIVREYGAERIILNSD 211 (254)
T ss_pred HHHcCCChhheehhcccHHHHHHHHhccceEEEEecCCcCCHHHHHHHHHHhCcceEEEecc
Confidence 554333322222 356666665555442 12345677788888889888887643
No 176
>KOG3341 consensus RNA polymerase II transcription factor complex subunit [Transcription]
Probab=24.55 E-value=1.3e+02 Score=24.90 Aligned_cols=27 Identities=26% Similarity=0.090 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEeeee
Q 027620 169 GSEADGREACKILHAAGPAKVVITSIN 195 (221)
Q Consensus 169 ~s~~~~~~a~~~L~~~G~~~VvVT~G~ 195 (221)
.+++|+..|+++|..+|+..++++.|.
T Consensus 137 vt~dD~lrAi~kLk~LG~gFev~~igg 163 (249)
T KOG3341|consen 137 VTEDDLLRAIDKLKVLGSGFEVIKIGG 163 (249)
T ss_pred ccHHHHHHHHHHhhccCCCeEEEEecC
Confidence 567999999999999999999999994
No 177
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=24.35 E-value=4e+02 Score=25.58 Aligned_cols=81 Identities=12% Similarity=-0.046 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeE--EEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCCHHHHH
Q 027620 98 VSFLNTILQVVEKLRSINPNLIY--VCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGR 175 (221)
Q Consensus 98 ~~~~~~i~~~i~~ak~~~~~~~v--vlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s~~~~~ 175 (221)
..+.+.+...++.+.++ |+.+ +||+--.-. .-....+..++ .=..+...++ +++-+..|.+...
T Consensus 92 ~~~d~vv~~~v~~a~~~--Gidv~Rifd~lnd~~----n~~~~i~~~k~-~G~~~~~~i~-------yt~sp~~t~e~~~ 157 (596)
T PRK14042 92 NYADDVVRAFVKLAVNN--GVDVFRVFDALNDAR----NLKVAIDAIKS-HKKHAQGAIC-------YTTSPVHTLDNFL 157 (596)
T ss_pred cCChHHHHHHHHHHHHc--CCCEEEEcccCcchH----HHHHHHHHHHH-cCCEEEEEEE-------ecCCCCCCHHHHH
Confidence 33567788888888887 6544 677521100 11223344433 1111111111 2333456677888
Q ss_pred HHHHHHHHcCCCeEEEe
Q 027620 176 EACKILHAAGPAKVVIT 192 (221)
Q Consensus 176 ~a~~~L~~~G~~~VvVT 192 (221)
+.++.+.+.|+..+.|+
T Consensus 158 ~~ak~l~~~Gad~I~Ik 174 (596)
T PRK14042 158 ELGKKLAEMGCDSIAIK 174 (596)
T ss_pred HHHHHHHHcCCCEEEeC
Confidence 88888888888877765
No 178
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=24.34 E-value=5.5e+02 Score=24.35 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=19.8
Q ss_pred EEEEeecCChhHHHHHHHHHHHHHhcCCC-CeEEEcccc
Q 027620 89 HLLTGYIGSVSFLNTILQVVEKLRSINPN-LIYVCDPVM 126 (221)
Q Consensus 89 ~v~~G~l~~~~~~~~i~~~i~~ak~~~~~-~~vvlDp~~ 126 (221)
.++.|.-|...... ....+..++++ | ..|++||..
T Consensus 167 Il~~G~Np~~~~p~-~~~~l~~A~~r--GakIIvIdP~~ 202 (574)
T cd02767 167 IFFIGQNPGTNHPR-MLHYLREAKKR--GGKIIVINPLR 202 (574)
T ss_pred EEEEcCChhhhcHH-HHHHHHHHHHC--CCEEEEECCCc
Confidence 36778755333222 33444566766 5 458999953
No 179
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=24.24 E-value=1.2e+02 Score=25.49 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCCCeEEEeeee
Q 027620 173 DGREACKILHAAGPAKVVITSIN 195 (221)
Q Consensus 173 ~~~~a~~~L~~~G~~~VvVT~G~ 195 (221)
+.+++++.+.+. ++|++|.|.
T Consensus 116 s~~~a~~~l~~~--~~vllttGs 136 (248)
T PRK08057 116 DIEEAAEALAPF--RRVLLTTGR 136 (248)
T ss_pred CHHHHHHHhhcc--CCEEEecCc
Confidence 455555555444 578888888
No 180
>PRK15447 putative protease; Provisional
Probab=24.08 E-value=4.6e+02 Score=22.48 Aligned_cols=114 Identities=11% Similarity=0.069 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHhcCcccccEEEEeecC----ChhHHHHHHHHHHHHHhcCCCCeEEEcc-cccCCCCCCCchhHHHH
Q 027620 67 LNGQQLCDLIEGLEANNLLYYTHLLTGYIG----SVSFLNTILQVVEKLRSINPNLIYVCDP-VMGDEGKLYVPSELVSV 141 (221)
Q Consensus 67 l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~----~~~~~~~i~~~i~~ak~~~~~~~vvlDp-~~~~~g~~~~~~~~~~~ 141 (221)
|+...++.+...+... .+|+|.+|.-. .+-..+.+.++++.++++ |+.|.+-. .... . ++..+.
T Consensus 12 ~p~~~~~~~~~~~~~~---gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~--gkkvyva~p~i~~-----~-~~e~~~ 80 (301)
T PRK15447 12 WPKETVRDFYQRAADS---PVDIVYLGETVCSKRRELKVGDWLELAERLAAA--GKEVVLSTLALVE-----A-PSELKE 80 (301)
T ss_pred CCCCCHHHHHHHHHcC---CCCEEEECCccCCCccCCCHHHHHHHHHHHHHc--CCEEEEEeccccc-----C-HHHHHH
Confidence 4445666666666543 25778887321 113467788899999988 88887743 2111 1 122233
Q ss_pred HHHhcCC-Cce-EEecCHHHHHHhc--CCCCC--CH-HH-HHHHHHHHHHcCCCeEEEe
Q 027620 142 YREKVVP-VAS-MLTPNQFEAEQLT--GFRIG--SE-AD-GREACKILHAAGPAKVVIT 192 (221)
Q Consensus 142 l~~~ll~-~~d-vi~pN~~Ea~~l~--g~~~~--s~-~~-~~~a~~~L~~~G~~~VvVT 192 (221)
+.+ ++. ..| ++.-|..++..+- +.++. +. .- -..+++.+.++|+..+++.
T Consensus 81 l~~-~l~~~~~~v~v~d~g~l~~~~e~~~~l~~d~~lni~N~~a~~~l~~~G~~rv~ls 138 (301)
T PRK15447 81 LRR-LVENGEFLVEANDLGAVRLLAERGLPFVAGPALNCYNAATLALLARLGATRWCMP 138 (301)
T ss_pred HHH-HHhcCCCEEEEeCHHHHHHHHhcCCCEEEecccccCCHHHHHHHHHcCCcEEEEC
Confidence 333 333 345 5555777766554 33321 00 00 1233455666777666554
No 181
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=23.82 E-value=3.5e+02 Score=25.36 Aligned_cols=79 Identities=18% Similarity=0.048 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCeE--EEcccccCCCCCCCchhHHHHHHHhcCCCc-eEEecCHHHHHHhcCCCCCCHHHHH
Q 027620 99 SFLNTILQVVEKLRSINPNLIY--VCDPVMGDEGKLYVPSELVSVYREKVVPVA-SMLTPNQFEAEQLTGFRIGSEADGR 175 (221)
Q Consensus 99 ~~~~~i~~~i~~ak~~~~~~~v--vlDp~~~~~g~~~~~~~~~~~l~~~ll~~~-dvi~pN~~Ea~~l~g~~~~s~~~~~ 175 (221)
-+.+.+...++.+.++ |+.+ +|||...-. .-+...+.+++ .-..+ -.|.- +.-+..+.+...
T Consensus 94 y~ddvv~~fv~~a~~~--Gidi~RIfd~lndv~----nl~~ai~~vk~-ag~~~~~~i~y--------t~sp~~t~e~~~ 158 (499)
T PRK12330 94 YEDEVVDRFVEKSAEN--GMDVFRVFDALNDPR----NLEHAMKAVKK-VGKHAQGTICY--------TVSPIHTVEGFV 158 (499)
T ss_pred cchhHHHHHHHHHHHc--CCCEEEEEecCChHH----HHHHHHHHHHH-hCCeEEEEEEE--------ecCCCCCHHHHH
Confidence 3456777788888777 5544 788732100 11223334433 21122 11111 111234567777
Q ss_pred HHHHHHHHcCCCeEEEe
Q 027620 176 EACKILHAAGPAKVVIT 192 (221)
Q Consensus 176 ~a~~~L~~~G~~~VvVT 192 (221)
+.++.+.+.|+..+.|+
T Consensus 159 ~~a~~l~~~Gad~I~Ik 175 (499)
T PRK12330 159 EQAKRLLDMGADSICIK 175 (499)
T ss_pred HHHHHHHHcCCCEEEeC
Confidence 77888888888777664
No 182
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=23.81 E-value=3.9e+02 Score=21.59 Aligned_cols=54 Identities=13% Similarity=0.098 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCC---CchhHHHH-HHHhcCCCceEEecCH
Q 027620 100 FLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLY---VPSELVSV-YREKVVPVASMLTPNQ 157 (221)
Q Consensus 100 ~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~---~~~~~~~~-l~~~ll~~~dvi~pN~ 157 (221)
..+.+.++.+.+++. ++++++|.... |..+ ..++..+. .+...-..+|+++.+.
T Consensus 107 ~~~~i~~v~~~~~~~--g~~~iie~~~~--g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~ 164 (235)
T cd00958 107 MLEELARVAAEAHKY--GLPLIAWMYPR--GPAVKNEKDPDLIAYAARIGAELGADIVKTKY 164 (235)
T ss_pred HHHHHHHHHHHHHHc--CCCEEEEEecc--CCcccCccCHHHHHHHHHHHHHHCCCEEEecC
Confidence 345667777777877 89999987442 1111 12222222 2221223789998863
No 183
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=23.70 E-value=1.1e+02 Score=24.09 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEeee
Q 027620 170 SEADGREACKILHAAGPAKVVITSI 194 (221)
Q Consensus 170 s~~~~~~a~~~L~~~G~~~VvVT~G 194 (221)
++++++++++.+.+.|++.|.|++=
T Consensus 132 d~~~v~~~~~~l~~~gv~avAV~~~ 156 (176)
T PF05378_consen 132 DEDEVREALRELKDKGVEAVAVSLL 156 (176)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECc
Confidence 5688999999999999999988753
No 184
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=23.66 E-value=5.3e+02 Score=23.04 Aligned_cols=85 Identities=16% Similarity=0.188 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCCCC-eEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecC--HHHHHHhcCCCCCCHHHHHHH
Q 027620 101 LNTILQVVEKLRSINPNL-IYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPN--QFEAEQLTGFRIGSEADGREA 177 (221)
Q Consensus 101 ~~~i~~~i~~ak~~~~~~-~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN--~~Ea~~l~g~~~~s~~~~~~a 177 (221)
-..+.++++.++++ +++ .|.+-. .|. +++++..+++.+.-+.+..+-.-. ..-|..|.|.+--+.+.+.+.
T Consensus 174 YP~l~~lVqalk~~-~~v~vVSmQT----ng~-~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~ 247 (414)
T COG2100 174 YPHLVDLVQALKEH-KGVEVVSMQT----NGV-LLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEV 247 (414)
T ss_pred chhHHHHHHHHhcC-CCceEEEEee----Cce-eccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHH
Confidence 56677888888886 333 244443 443 356777777776446665554433 444788999887778888888
Q ss_pred HHHHHHcCCCeEEEe
Q 027620 178 CKILHAAGPAKVVIT 192 (221)
Q Consensus 178 ~~~L~~~G~~~VvVT 192 (221)
++.+.+.|.. |+|+
T Consensus 248 aE~i~~a~id-vlIa 261 (414)
T COG2100 248 AEYIANAGID-VLIA 261 (414)
T ss_pred HHHHHhCCCC-EEEe
Confidence 9888887765 4443
No 185
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=23.65 E-value=93 Score=26.36 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=31.4
Q ss_pred hcCCCceEEecCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCeEEEe
Q 027620 145 KVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVIT 192 (221)
Q Consensus 145 ~ll~~~dvi~pN~~Ea~~l~g~~~~s~~~~~~a~~~L~~~G~~~VvVT 192 (221)
.|+..+|++..+|- +.|.+..++..+.+..++|.+.|+..++||
T Consensus 153 AL~~~p~lllLDEP----~~gvD~~~~~~i~~lL~~l~~eg~tIl~vt 196 (254)
T COG1121 153 ALAQNPDLLLLDEP----FTGVDVAGQKEIYDLLKELRQEGKTVLMVT 196 (254)
T ss_pred HhccCCCEEEecCC----cccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 37778888877654 456666677788888888887776555554
No 186
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=23.61 E-value=3.9e+02 Score=21.48 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=19.7
Q ss_pred ccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEccccc
Q 027620 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG 127 (221)
Q Consensus 87 ~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~ 127 (221)
++.+++|+ +.....=.++++.+++. +.++++|-...
T Consensus 24 v~~iKig~---~l~~~~G~~~v~~l~~~--~~~v~lD~K~~ 59 (213)
T TIGR01740 24 IEVIKVGI---DLLLDGGDKIIDELAKL--NKLIFLDLKFA 59 (213)
T ss_pred CcEEEECH---HHHHhcCHHHHHHHHHc--CCCEEEEEeec
Confidence 44567665 22222223566677766 55777887443
No 187
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=23.38 E-value=2.9e+02 Score=20.74 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=7.5
Q ss_pred HHHhcCCceeee
Q 027620 37 PLQLLGYDVDPI 48 (221)
Q Consensus 37 ~l~~~gi~~~~v 48 (221)
.|+..|+++.++
T Consensus 26 ~lr~~G~eVi~L 37 (137)
T PRK02261 26 ALTEAGFEVINL 37 (137)
T ss_pred HHHHCCCEEEEC
Confidence 477777766544
No 188
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=23.34 E-value=5e+02 Score=22.59 Aligned_cols=82 Identities=10% Similarity=0.092 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCC--CceEEecCHHHHHHhcCC-CCCCHHHH
Q 027620 98 VSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVP--VASMLTPNQFEAEQLTGF-RIGSEADG 174 (221)
Q Consensus 98 ~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~--~~dvi~pN~~Ea~~l~g~-~~~s~~~~ 174 (221)
+.....+.++++.++++ |..+.++. +|. . ++.++.+.. ... .+++=-+|.+....+.+. .-.+.+.+
T Consensus 141 PlL~p~l~eli~~~k~~--Gi~~~L~T----NG~--~-~e~l~~L~~-~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~v 210 (322)
T PRK13762 141 PTLYPYLPELIEEFHKR--GFTTFLVT----NGT--R-PDVLEKLEE-EPTQLYVSLDAPDEETYKKINRPVIPDAWERI 210 (322)
T ss_pred ccchhhHHHHHHHHHHc--CCCEEEEC----CCC--C-HHHHHHHHh-cCCEEEEEccCCCHHHHHHHhCCCCCCcHHHH
Confidence 33355788999999998 88999998 442 2 344444421 111 223334555555666653 22356778
Q ss_pred HHHHHHHHHcCCCeE
Q 027620 175 REACKILHAAGPAKV 189 (221)
Q Consensus 175 ~~a~~~L~~~G~~~V 189 (221)
.+..+.+.+.|...+
T Consensus 211 l~~L~~l~~~~~~~~ 225 (322)
T PRK13762 211 LETLELLPSKKTRTV 225 (322)
T ss_pred HHHHHHHHhCCCCEE
Confidence 888888887775543
No 189
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=23.33 E-value=4.3e+02 Score=21.79 Aligned_cols=92 Identities=11% Similarity=0.004 Sum_probs=42.6
Q ss_pred ccCccchhhcHHHHHhcCCceeeeeeEEe-ecCCCCCccceeeCCHHHHHHHHHHHHhcCccc-ccEEE--EeecCChhH
Q 027620 25 VQGYVGNKSAVFPLQLLGYDVDPIHSVQF-SNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLY-YTHLL--TGYIGSVSF 100 (221)
Q Consensus 25 ~~G~vG~d~~~~~l~~~gi~~~~v~~~~~-~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~-~~~v~--~G~l~~~~~ 100 (221)
+.|++|.. ..+.|.+.|.++..+..... ....+...+.++.-+++.+...++..+... . ++.++ .+..+ ..
T Consensus 7 atG~iG~~-vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~--g~~d~v~~~~~~~~--~~ 81 (285)
T TIGR03649 7 GTGKTASR-IARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGME--PEISAVYLVAPPIP--DL 81 (285)
T ss_pred CCChHHHH-HHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcC--CceeEEEEeCCCCC--Ch
Confidence 45667766 45667777887665543211 011122222344444555555442211100 1 34332 22211 12
Q ss_pred HHHHHHHHHHHHhcCCCCe-EEEc
Q 027620 101 LNTILQVVEKLRSINPNLI-YVCD 123 (221)
Q Consensus 101 ~~~i~~~i~~ak~~~~~~~-vvlD 123 (221)
.+....+++.+++. |++ +|+-
T Consensus 82 ~~~~~~~i~aa~~~--gv~~~V~~ 103 (285)
T TIGR03649 82 APPMIKFIDFARSK--GVRRFVLL 103 (285)
T ss_pred hHHHHHHHHHHHHc--CCCEEEEe
Confidence 34455677888877 653 4443
No 190
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=23.28 E-value=2.8e+02 Score=25.52 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=41.6
Q ss_pred eeeCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEE--cc
Q 027620 64 GQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVC--DP 124 (221)
Q Consensus 64 G~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvl--Dp 124 (221)
|+..+++++-++++.++.... .-...++.-++...-.+.+=.+++..++. |.+|+| ||
T Consensus 287 GP~~~p~~l~~L~~~LnP~~e-pGRlTLI~RmGa~kV~~~LP~li~aV~~~--G~~VvW~cDP 346 (443)
T TIGR01358 287 GPSMTPDELLRLIERLNPENE-PGRLTLISRMGADKIADKLPPLLRAVKAA--GRRVVWVCDP 346 (443)
T ss_pred CCCCCHHHHHHHHHHhCCCCC-CceEEEEeccCchHHHHhHHHHHHHHHHc--CCceEEeecC
Confidence 568889999999998876653 12256666666566667777788888887 777765 55
No 191
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=23.21 E-value=2.1e+02 Score=25.50 Aligned_cols=54 Identities=9% Similarity=0.110 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCcccccEEEEeecCChh----HHHHHHHHHHHHHhcCCCCeEEEccccc
Q 027620 69 GQQLCDLIEGLEANNLLYYTHLLTGYIGSVS----FLNTILQVVEKLRSINPNLIYVCDPVMG 127 (221)
Q Consensus 69 ~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~----~~~~i~~~i~~ak~~~~~~~vvlDp~~~ 127 (221)
.++..+.++..... .+.-+++.....+. ..+.+.++++.|++. +..|++|-+|.
T Consensus 13 ~~~~~~yi~~a~~~---Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~--~~~v~~Disp~ 70 (357)
T PF05913_consen 13 FEENKAYIEKAAKY---GFKRIFTSLHIPEDDPEDYLERLKELLKLAKEL--GMEVIADISPK 70 (357)
T ss_dssp HHHHHHHHHHHHCT---TEEEEEEEE---------HHHHHHHHHHHHHHC--T-EEEEEE-CC
T ss_pred HHHHHHHHHHHHHC---CCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHC--CCEEEEECCHH
Confidence 45555555555443 35567776665443 246677889999999 99999999875
No 192
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.18 E-value=5.9e+02 Score=23.40 Aligned_cols=107 Identities=14% Similarity=0.216 Sum_probs=57.2
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCCHHHHHH
Q 027620 97 SVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGRE 176 (221)
Q Consensus 97 ~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s~~~~~~ 176 (221)
...+..+..+-+++.|+.+-. .|++|.+ |.+-.+.+..+. +..-...+.||+.= ...+..+ -..+++
T Consensus 165 e~dpv~ia~egv~~fKke~fd-vIIvDTS----GRh~qe~sLfeE----M~~v~~ai~Pd~vi--~VmDasi--GQaae~ 231 (483)
T KOG0780|consen 165 EADPVKIASEGVDRFKKENFD-VIIVDTS----GRHKQEASLFEE----MKQVSKAIKPDEII--FVMDASI--GQAAEA 231 (483)
T ss_pred ccchHHHHHHHHHHHHhcCCc-EEEEeCC----CchhhhHHHHHH----HHHHHhhcCCCeEE--EEEeccc--cHhHHH
Confidence 445677777888888877333 4788984 433333333333 33344555555431 1111111 134555
Q ss_pred HHHHHH-HcCCCeEEEee--eeeCCcEEEEEeeccCCCcceeecC
Q 027620 177 ACKILH-AAGPAKVVITS--INIDGNLFLIGSHQKEKVGPLCVKG 218 (221)
Q Consensus 177 a~~~L~-~~G~~~VvVT~--G~~~~~~~~~~~~~~~~~~~~~~~~ 218 (221)
.++.+. .-++..||||. |+.+|.-.. +.-.++.+|+-|=|
T Consensus 232 Qa~aFk~~vdvg~vIlTKlDGhakGGgAl--SaVaaTksPIiFIG 274 (483)
T KOG0780|consen 232 QARAFKETVDVGAVILTKLDGHAKGGGAL--SAVAATKSPIIFIG 274 (483)
T ss_pred HHHHHHHhhccceEEEEecccCCCCCcee--eehhhhCCCEEEEe
Confidence 566665 34677899984 555553322 33357777765433
No 193
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=22.93 E-value=2.4e+02 Score=24.24 Aligned_cols=60 Identities=22% Similarity=0.275 Sum_probs=35.8
Q ss_pred HHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCe
Q 027620 109 EKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAK 188 (221)
Q Consensus 109 ~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s~~~~~~a~~~L~~~G~~~ 188 (221)
...+.. ++.|.+||..+ +.|+=.=+.|+..|.+.|.. +.+-++...+. +..
T Consensus 18 t~vet~--dv~ILiDpGVs------------------LaPkRy~LPPh~~E~erl~~--------~r~~i~~~ak~-a~V 68 (304)
T COG2248 18 TFVETK--DVGILIDPGVS------------------LAPKRYGLPPHQRELERLRQ--------AREKIQRYAKK-ADV 68 (304)
T ss_pred heeecC--CeeEEECCccc------------------cCccccCCCCCHHHHHHHHH--------HHHHHHHHHhh-CCE
Confidence 334444 88999999542 33333445689999888743 22223332222 566
Q ss_pred EEEeeeeeC
Q 027620 189 VVITSINID 197 (221)
Q Consensus 189 VvVT~G~~~ 197 (221)
++||--++|
T Consensus 69 itISHYHYD 77 (304)
T COG2248 69 ITISHYHYD 77 (304)
T ss_pred EEEeeeccc
Confidence 778877776
No 194
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=22.75 E-value=2.8e+02 Score=25.74 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=41.8
Q ss_pred eeeCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEE--cc
Q 027620 64 GQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVC--DP 124 (221)
Q Consensus 64 G~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvl--Dp 124 (221)
|+..+++++-++++.++.... .-...++.-++...-.+.+=.+++..++. |.+|+| ||
T Consensus 307 GPs~~pdel~~L~~~LnP~~e-pGRlTLI~RmGa~kV~~~LP~Li~aV~~~--G~~VvW~cDP 366 (474)
T PLN02291 307 SDKMDPEELVKLIEILNPQNK-PGRLTIIVRMGAEKLRVKLPHLIRAVRRA--GQIVTWVSDP 366 (474)
T ss_pred CCCCCHHHHHHHHHHhCCCCC-CceEEEEeccchHHHHHHHHHHHHHHHHc--CCceEEeecC
Confidence 568889999999998876653 12256666666566567777788888887 777765 55
No 195
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=22.71 E-value=4.3e+02 Score=24.29 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=40.5
Q ss_pred eeeCCHHHHHHHHHHHHhcCcccccEEEEe----ecCChhHHHHHHHHHHHHHhcCCCCeEEEccccc
Q 027620 64 GQVLNGQQLCDLIEGLEANNLLYYTHLLTG----YIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG 127 (221)
Q Consensus 64 G~~l~~~~i~~~l~~i~~~~~l~~~~v~~G----~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~ 127 (221)
|..++.+.+++.++.-..... .+.++++- -++.-.+.+.+..++..++++ ++.+|.|=+.+
T Consensus 205 ~f~itv~alE~A~~~A~~~~~-kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~k--niHvI~DEIya 269 (471)
T KOG0256|consen 205 GFQITVEALEAALNQARKLGL-KVKGVLITNPSNPLGTTLSPEELISLLNFASRK--NIHVISDEIYA 269 (471)
T ss_pred CccccHHHHHHHHHHHHHhCC-ceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhc--ceEEEeehhhc
Confidence 667888888776655444332 34544442 222334478888899999888 99999998764
No 196
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=22.47 E-value=2.5e+02 Score=25.45 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=37.8
Q ss_pred eCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcC--CCCeEEEcc
Q 027620 66 VLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSIN--PNLIYVCDP 124 (221)
Q Consensus 66 ~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~--~~~~vvlDp 124 (221)
.++.+++++..+.+.....-.+|.|.+|- +....+.+.++.+.++.++ +++++.+-.
T Consensus 269 ~i~~~dl~~~~~~l~~~~~~~~D~V~lGc--PH~S~~El~~ia~ll~gr~~~~~~~~~i~t 327 (400)
T PF04412_consen 269 TITDADLEEVYEELNTAGDEKVDLVALGC--PHLSLEELREIAELLEGRKVHPNVPLWITT 327 (400)
T ss_pred EeCHHHHHHHHHHhccCCCCCCCEEEECC--CCCCHHHHHHHHHHHhCCCCCCCceEEEEC
Confidence 67889999988888333222577788775 3455777777777777663 455555544
No 197
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=22.28 E-value=4.5e+02 Score=24.28 Aligned_cols=99 Identities=18% Similarity=0.152 Sum_probs=53.3
Q ss_pred cHHHHHhcC-CceeeeeeEEeecCCCCCccceeeCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHH
Q 027620 34 AVFPLQLLG-YDVDPIHSVQFSNHTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLR 112 (221)
Q Consensus 34 ~~~~l~~~g-i~~~~v~~~~~~~~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak 112 (221)
+...|++.| .++..+-... ..++.+++.+. +... .+|+|.+.... .......++++.+|
T Consensus 28 lAa~L~~~G~~~V~iiD~~~------------~~~~~~~~~~~---l~~~---~pdvVgis~~t--~~~~~a~~~~~~~k 87 (497)
T TIGR02026 28 IGGALLDAGYHDVTFLDAMT------------GPLTDEKLVER---LRAH---CPDLVLITAIT--PAIYIACETLKFAR 87 (497)
T ss_pred HHHHHHhcCCcceEEecccc------------cCCCHHHHHHH---HHhc---CcCEEEEecCc--ccHHHHHHHHHHHH
Confidence 334688888 5665442111 23444555443 3322 25644443322 13455667888888
Q ss_pred hcCCCCeEEEcccccCCCCCCCchhHHHHHHHhcCCCceEEecCHHHHH
Q 027620 113 SINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAE 161 (221)
Q Consensus 113 ~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll~~~dvi~pN~~Ea~ 161 (221)
+..|+++||+==.-.+ +..++ .+ + -.+.+|++...+.|..
T Consensus 88 ~~~P~~~iV~GG~h~t----~~~~~---~l-~-~~p~vD~Vv~GEGE~~ 127 (497)
T TIGR02026 88 ERLPNAIIVLGGIHPT----FMFHQ---VL-T-EAPWIDFIVRGEGEET 127 (497)
T ss_pred HHCCCCEEEEcCCCcC----cCHHH---HH-h-cCCCccEEEeCCcHHH
Confidence 8788988876531111 12221 11 1 2468999999998854
No 198
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=22.27 E-value=4.8e+02 Score=22.01 Aligned_cols=29 Identities=21% Similarity=0.164 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEeeeeeC
Q 027620 169 GSEADGREACKILHAAGPAKVVITSINID 197 (221)
Q Consensus 169 ~s~~~~~~a~~~L~~~G~~~VvVT~G~~~ 197 (221)
.|.+.+++..-..++.|+..+|++-|++.
T Consensus 68 AS~~Av~e~~~~~L~~g~d~iV~SVGALa 96 (255)
T COG1712 68 ASPEAVREYVPKILKAGIDVIVMSVGALA 96 (255)
T ss_pred CCHHHHHHHhHHHHhcCCCEEEEechhcc
Confidence 35678888888888999999999999865
No 199
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=22.19 E-value=1e+02 Score=25.54 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEccccc
Q 027620 101 LNTILQVVEKLRSINPNLIYVCDPVMG 127 (221)
Q Consensus 101 ~~~i~~~i~~ak~~~~~~~vvlDp~~~ 127 (221)
.+.+.++++.|+++ |++|++|-++.
T Consensus 51 ~~d~~~Lv~~~h~~--gi~VilD~V~N 75 (316)
T PF00128_consen 51 MEDFKELVDAAHKR--GIKVILDVVPN 75 (316)
T ss_dssp HHHHHHHHHHHHHT--TCEEEEEEETS
T ss_pred hhhhhhhhhccccc--cceEEEeeecc
Confidence 45677889999999 99999999875
No 200
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=22.17 E-value=1.1e+02 Score=20.54 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=24.2
Q ss_pred EEEEeccCccCccchhh-cHHHHHhcCCcee
Q 027620 17 VLSIQSHTVQGYVGNKS-AVFPLQLLGYDVD 46 (221)
Q Consensus 17 vl~i~~~~~~G~vG~d~-~~~~l~~~gi~~~ 46 (221)
.|-+-+-|++|..|-|. +++.|++++++.-
T Consensus 3 alevfdqdMvG~~g~d~~i~~~l~~~~v~ii 33 (71)
T cd04910 3 ALEVFDQDMVGEVGYDLEILELLQRFKVSII 33 (71)
T ss_pred EEEEeCCCccCChhHHHHHHHHHHHcCCeEE
Confidence 35677788999999777 7788999998864
No 201
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=22.12 E-value=58 Score=29.14 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=29.7
Q ss_pred HHHHHHhcCCCceEEecCHHHHHHhcCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeeeeC
Q 027620 139 VSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAG-PAKVVITSINID 197 (221)
Q Consensus 139 ~~~l~~~ll~~~dvi~pN~~Ea~~l~g~~~~s~~~~~~a~~~L~~~G-~~~VvVT~G~~~ 197 (221)
+..+|. +-+..|++.|+... ++.|.+++.+..+.|.+.+ -+.|-|+++...
T Consensus 163 ia~~R~-~~~g~~~iSP~~h~-------di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~ 214 (368)
T PF01645_consen 163 IARIRG-VPPGVDLISPPPHH-------DIYSIEDLAQLIEELRELNPGKPVGVKLVAGR 214 (368)
T ss_dssp HHHHHT-S-TT--EE--SS-T-------T-SSHHHHHHHHHHHHHH-TTSEEEEEEE-ST
T ss_pred HHHHhC-CCCCCccccCCCCC-------CcCCHHHHHHHHHHHHhhCCCCcEEEEECCCC
Confidence 455564 66778888887652 3456788888888888765 567778887755
No 202
>PTZ00413 lipoate synthase; Provisional
Probab=22.12 E-value=1.4e+02 Score=27.08 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEeeeeeC
Q 027620 169 GSEADGREACKILHAAGPAKVVITSINID 197 (221)
Q Consensus 169 ~s~~~~~~a~~~L~~~G~~~VvVT~G~~~ 197 (221)
.+.+++.+.|+...++|.+.+|||.|..|
T Consensus 177 lD~eEp~~vA~av~~~Gl~~~VVTSv~RD 205 (398)
T PTZ00413 177 LDPNEPEKVAKAVAEMGVDYIVMTMVDRD 205 (398)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEEcCC
Confidence 46788889999999999999999999753
No 203
>PRK06498 isocitrate lyase; Provisional
Probab=21.93 E-value=6.7e+02 Score=23.59 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHHhc---------CCCceEEecCHHHHHHhcCCCCCC
Q 027620 100 FLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKV---------VPVASMLTPNQFEAEQLTGFRIGS 170 (221)
Q Consensus 100 ~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~~l---------l~~~dvi~pN~~Ea~~l~g~~~~s 170 (221)
..+.+.++.+..|+.+|+.+++++-+|+-. |....++.+.+.. +.+..++.+.-++.+. ..++
T Consensus 357 ~~~qa~~fa~~Ir~~~P~~~LaYN~SPSFN----W~~~~r~q~~~~~~~~G~~~~~~~~~~lm~~~~d~~~l----~~~~ 428 (531)
T PRK06498 357 HVAQIAGMVNRIREVVPNAKLVYNNSPSFN----WTLNFRQQVYDAWKAEGKDVSAYDRAKLMSAEYDDTEL----AAEA 428 (531)
T ss_pred CHHHHHHHHHHHHHHCCCCeEEecCCCCcc----hhhhHHHHHHHHHHHhcccccccchhhhcccccccccc----ccCC
Confidence 367777888888998999999999987632 2222212111111 1223333332222211 1234
Q ss_pred HHHHHHHHHHHHH-cCCCeEEEeeee
Q 027620 171 EADGREACKILHA-AGPAKVVITSIN 195 (221)
Q Consensus 171 ~~~~~~a~~~L~~-~G~~~VvVT~G~ 195 (221)
.+.+....+.+.+ +|..+=+||+-.
T Consensus 429 d~~i~~Fq~dla~~~G~~~qfITLag 454 (531)
T PRK06498 429 DEKIRTFQADAAREAGIFHHLITLPT 454 (531)
T ss_pred HHHHHHHHHHHHHhCCceEEEeccHh
Confidence 5667777777876 899999999765
No 204
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=21.90 E-value=2.9e+02 Score=22.85 Aligned_cols=36 Identities=19% Similarity=0.142 Sum_probs=24.3
Q ss_pred ccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEccc
Q 027620 87 YTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPV 125 (221)
Q Consensus 87 ~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~ 125 (221)
.|++++|-- .....+.+.++++.+|+. .+|+++-|.
T Consensus 28 tdai~vGGS-~~vt~~~~~~~v~~ik~~--~lPvilfp~ 63 (223)
T TIGR01768 28 TDAILIGGS-QGVTYEKTDTLIEALRRY--GLPIILFPS 63 (223)
T ss_pred CCEEEEcCC-CcccHHHHHHHHHHHhcc--CCCEEEeCC
Confidence 466655432 234456777788888887 689998874
No 205
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=21.79 E-value=3.1e+02 Score=25.47 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=47.7
Q ss_pred CCeEEEcccccCCCCCCCchhHHHHHHHhcC-CCceEEecCHHHHH--HhcCC-CCCCHHHHHHHHHHHHH------cCC
Q 027620 117 NLIYVCDPVMGDEGKLYVPSELVSVYREKVV-PVASMLTPNQFEAE--QLTGF-RIGSEADGREACKILHA------AGP 186 (221)
Q Consensus 117 ~~~vvlDp~~~~~g~~~~~~~~~~~l~~~ll-~~~dvi~pN~~Ea~--~l~g~-~~~s~~~~~~a~~~L~~------~G~ 186 (221)
+.|+++=|.+-.. +|..+-+++.+.. |- ..+.++-|...++. .-.|. ...+++++..+..+++. +-.
T Consensus 180 ~~PvliaPaMN~~--M~~npat~~Nl~~-L~~~G~~vi~P~~g~lA~~g~~G~Grm~e~~~I~~~v~~~~~~~~~~~l~g 256 (475)
T PRK13982 180 NRPILLAPAMNPL--MWNNPATRRNVAQ-LKRDGVHMIGPNAGEMAERGEAGVGRMAEPLEIAAAAEALLRPPQPKPLAG 256 (475)
T ss_pred CCCEEEEEcCCHH--HhcCHHHHHHHHH-HHHCCCEEECCCCCccccCCCcCCCCCCCHHHHHHHHHHHHhhccccccCC
Confidence 5689998976432 4445555555554 33 37889989876653 23332 24556776666654442 345
Q ss_pred CeEEEeeeeeC
Q 027620 187 AKVVITSINID 197 (221)
Q Consensus 187 ~~VvVT~G~~~ 197 (221)
+.|+||.|.--
T Consensus 257 kkvLITaGpT~ 267 (475)
T PRK13982 257 RRVLITAGPTH 267 (475)
T ss_pred CEEEEecCCcc
Confidence 68999999843
No 206
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=21.79 E-value=1.6e+02 Score=18.57 Aligned_cols=30 Identities=30% Similarity=0.340 Sum_probs=22.9
Q ss_pred ecCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCC
Q 027620 154 TPNQFEAEQLTGFRIGSEADGREACKILHAAGP 186 (221)
Q Consensus 154 ~pN~~Ea~~l~g~~~~s~~~~~~a~~~L~~~G~ 186 (221)
.|++.|+...+|.. ...+.++.+.|.+.|.
T Consensus 24 lps~~~la~~~~vs---r~tvr~al~~L~~~g~ 53 (64)
T PF00392_consen 24 LPSERELAERYGVS---RTTVREALRRLEAEGL 53 (64)
T ss_dssp E--HHHHHHHHTS----HHHHHHHHHHHHHTTS
T ss_pred eCCHHHHHHHhccC---CcHHHHHHHHHHHCCc
Confidence 48999999999874 5778899999998884
No 207
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=21.26 E-value=1.9e+02 Score=17.27 Aligned_cols=30 Identities=33% Similarity=0.330 Sum_probs=24.6
Q ss_pred ecCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCC
Q 027620 154 TPNQFEAEQLTGFRIGSEADGREACKILHAAGP 186 (221)
Q Consensus 154 ~pN~~Ea~~l~g~~~~s~~~~~~a~~~L~~~G~ 186 (221)
.|+..|+...++. |...+.++.+.|.+.|.
T Consensus 20 l~s~~~la~~~~v---s~~tv~~~l~~L~~~g~ 49 (60)
T smart00345 20 LPSERELAAQLGV---SRTTVREALSRLEAEGL 49 (60)
T ss_pred CcCHHHHHHHHCC---CHHHHHHHHHHHHHCCC
Confidence 4689999988887 46788999999988884
No 208
>PRK12928 lipoyl synthase; Provisional
Probab=21.26 E-value=1.6e+02 Score=25.26 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEeeeeeC
Q 027620 170 SEADGREACKILHAAGPAKVVITSINID 197 (221)
Q Consensus 170 s~~~~~~a~~~L~~~G~~~VvVT~G~~~ 197 (221)
+.+++.+.++.+.++|.+.+++|.|..+
T Consensus 88 ~~eei~~~a~~~~~~G~keivitg~~~d 115 (290)
T PRK12928 88 DPDEPERVAEAVAALGLRYVVLTSVARD 115 (290)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEEeCC
Confidence 5678888888888999999999999853
No 209
>PRK14725 pyruvate kinase; Provisional
Probab=21.25 E-value=7e+02 Score=24.07 Aligned_cols=38 Identities=3% Similarity=-0.065 Sum_probs=23.5
Q ss_pred ccEEEE--eecCChhH----HHHHHHHHHHHHhcCCCCeEEEcccc
Q 027620 87 YTHLLT--GYIGSVSF----LNTILQVVEKLRSINPNLIYVCDPVM 126 (221)
Q Consensus 87 ~~~v~~--G~l~~~~~----~~~i~~~i~~ak~~~~~~~vvlDp~~ 126 (221)
.|+|++ |.|.-+.+ ..+-.+++..|+.. +++||+-..+
T Consensus 501 ~DGIMIARGDLgvEi~~e~lp~iQk~Ii~~c~~~--~kPVI~ATQm 544 (608)
T PRK14725 501 RFGVMIARGDLAVEVGFERLAEVQEEILWLCEAA--HVPVIWATQV 544 (608)
T ss_pred CcEEEEECCccccccCHHHHHHHHHHHHHHHHHc--CCCEEEEcch
Confidence 355544 55554444 23445688888888 8888886643
No 210
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=21.11 E-value=2.1e+02 Score=24.09 Aligned_cols=61 Identities=18% Similarity=0.122 Sum_probs=32.3
Q ss_pred CCCCCccceeeCCHHHHHHHHHHHHhcCcccccEEEEeecCCh-hHHHHHHHHHHHHHhcCCCCeEEE
Q 027620 56 HTGYPTFKGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSV-SFLNTILQVVEKLRSINPNLIYVC 122 (221)
Q Consensus 56 ~~~~~~~~G~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~-~~~~~i~~~i~~ak~~~~~~~vvl 122 (221)
..|.+.+...-+....++.+++..-. ++|.++.|.=.+. .+.+.+.+.++.++++ ++.+..
T Consensus 11 ~~GlT~v~Dkglg~~~~~dlLe~ag~----yID~~K~g~Gt~~l~~~~~l~eki~l~~~~--gV~v~~ 72 (244)
T PF02679_consen 11 SRGLTMVIDKGLGLRYLEDLLESAGD----YIDFLKFGWGTSALYPEEILKEKIDLAHSH--GVYVYP 72 (244)
T ss_dssp SSS-EEEEESS--HHHHHHHHHHHGG----G-SEEEE-TTGGGGSTCHHHHHHHHHHHCT--T-EEEE
T ss_pred CCCcEEEecCCCCHHHHHHHHHHhhh----hccEEEecCceeeecCHHHHHHHHHHHHHc--CCeEeC
Confidence 34444443333666777777655432 4777888742211 2256778888888888 776653
No 211
>PF10943 DUF2632: Protein of unknown function (DUF2632); InterPro: IPR024251 This is a family of potential membrane proteins that may be components of the viral envelope.
Probab=20.71 E-value=32 Score=26.74 Aligned_cols=8 Identities=63% Similarity=1.859 Sum_probs=7.2
Q ss_pred eeecCCCC
Q 027620 214 LCVKGLWF 221 (221)
Q Consensus 214 ~~~~~~~~ 221 (221)
+|+.||||
T Consensus 184 icvngqwf 191 (233)
T PF10943_consen 184 ICVNGQWF 191 (233)
T ss_pred eeeCCEEE
Confidence 69999997
No 212
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=20.43 E-value=4.1e+02 Score=20.54 Aligned_cols=108 Identities=12% Similarity=0.140 Sum_probs=57.3
Q ss_pred eCCHHHHHHHHHHHHhcCccccc-EEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHH
Q 027620 66 VLNGQQLCDLIEGLEANNLLYYT-HLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE 144 (221)
Q Consensus 66 ~l~~~~i~~~l~~i~~~~~l~~~-~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~ 144 (221)
.++.+++.+.+...... .. +.++|--| .....+.++++.+++. +..+.+.++ |. .++.++.+.+
T Consensus 46 ~~~~~~i~~~i~~~~~~----~~~i~~sGGEP--ll~~~l~~li~~~~~~--g~~v~i~TN----g~---~~~~l~~l~~ 110 (191)
T TIGR02495 46 EIEVEFLLEFLRSRQGL----IDGVVITGGEP--TLQAGLPDFLRKVREL--GFEVKLDTN----GS---NPRVLEELLE 110 (191)
T ss_pred cCCHHHHHHHHHHhcCC----CCeEEEECCcc--cCcHhHHHHHHHHHHC--CCeEEEEeC----CC---CHHHHHHHHh
Confidence 46666666655443211 12 23455322 2222377888998887 888888874 31 2333444332
Q ss_pred hcCCCceEEec----CHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCeEE
Q 027620 145 KVVPVASMLTP----NQFEAEQLTGFRIGSEADGREACKILHAAGPAKVV 190 (221)
Q Consensus 145 ~ll~~~dvi~p----N~~Ea~~l~g~~~~s~~~~~~a~~~L~~~G~~~Vv 190 (221)
. ...|.+.. ..++...++|.+-...+++.++.+.+.+.|.+..+
T Consensus 111 ~--g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~i 158 (191)
T TIGR02495 111 E--GLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFEL 158 (191)
T ss_pred c--CCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEEE
Confidence 1 12333322 23445567775422223777888888888876433
No 213
>PRK09206 pyruvate kinase; Provisional
Probab=20.42 E-value=7e+02 Score=23.18 Aligned_cols=129 Identities=14% Similarity=0.041 Sum_probs=77.3
Q ss_pred eeCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCCeEEEcccccCCCCCCCchhHHHHHHH
Q 027620 65 QVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYRE 144 (221)
Q Consensus 65 ~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~~~~~g~~~~~~~~~~~l~~ 144 (221)
+.++..+.+.+.-.++ . .+|.+...++-+......+.+.++..... ...++.-- ...+..+.+.+
T Consensus 168 p~ltekD~~di~f~~~-~---~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~--~~~iiaKI---------Et~eav~nlde 232 (470)
T PRK09206 168 PALAEKDKQDLIFGCE-Q---GVDFVAASFIRKRSDVLEIREHLKAHGGE--NIQIISKI---------ENQEGLNNFDE 232 (470)
T ss_pred CCCCHHHHHHHHHHHH-c---CCCEEEEcCCCCHHHHHHHHHHHHHcCCC--CceEEEEE---------CCHHHHHhHHH
Confidence 3677777777532332 2 36667777777666666656555543211 23444332 23556667776
Q ss_pred hcCCCceEEecCHHHHHHhcCCCCCCHHHHHH----HHHHHHHcCCCeEEEee---------------------eeeCCc
Q 027620 145 KVVPVASMLTPNQFEAEQLTGFRIGSEADGRE----ACKILHAAGPAKVVITS---------------------INIDGN 199 (221)
Q Consensus 145 ~ll~~~dvi~pN~~Ea~~l~g~~~~s~~~~~~----a~~~L~~~G~~~VvVT~---------------------G~~~~~ 199 (221)
++..+|-+..-..++..=.|. +++.. .++...+.|...++-|. .-+||.
T Consensus 233 -Il~~~DgImVaRGDLgvelg~-----e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~ 306 (470)
T PRK09206 233 -ILEASDGIMVARGDLGVEIPV-----EEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGT 306 (470)
T ss_pred -HHHhCCEEEECcchhhhhcCH-----HHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCC
Confidence 888899999988887765553 23332 33333566766555442 334577
Q ss_pred EEEEEeeccCCCcce
Q 027620 200 LFLIGSHQKEKVGPL 214 (221)
Q Consensus 200 ~~~~~~~~~~~~~~~ 214 (221)
....++.+-+.|++|
T Consensus 307 DavMLS~ETA~G~yP 321 (470)
T PRK09206 307 DAVMLSGESAKGKYP 321 (470)
T ss_pred cEEEEechhcCCCCH
Confidence 788888888888875
No 214
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=20.41 E-value=1.6e+02 Score=24.69 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=24.5
Q ss_pred ccEEEE-eecCChhHHHHHHHHHHHHHhcCCCCeEEEccc
Q 027620 87 YTHLLT-GYIGSVSFLNTILQVVEKLRSINPNLIYVCDPV 125 (221)
Q Consensus 87 ~~~v~~-G~l~~~~~~~~i~~~i~~ak~~~~~~~vvlDp~ 125 (221)
-|++++ |+. +...+.+.+.++.+|++ .++|+++-|.
T Consensus 42 TDaImIGGS~--gvt~~~~~~~v~~ik~~-~~lPvilfP~ 78 (240)
T COG1646 42 TDAIMIGGSD--GVTEENVDNVVEAIKER-TDLPVILFPG 78 (240)
T ss_pred CCEEEECCcc--cccHHHHHHHHHHHHhh-cCCCEEEecC
Confidence 466655 442 34456777888888842 3899999994
No 215
>PF13730 HTH_36: Helix-turn-helix domain
Probab=20.40 E-value=2e+02 Score=17.36 Aligned_cols=30 Identities=23% Similarity=0.178 Sum_probs=23.8
Q ss_pred EecCHHHHHHhcCCCCCCHHHHHHHHHHHHHcC
Q 027620 153 LTPNQFEAEQLTGFRIGSEADGREACKILHAAG 185 (221)
Q Consensus 153 i~pN~~Ea~~l~g~~~~s~~~~~~a~~~L~~~G 185 (221)
..|+.+..+..+|.. ...+.++.+.|.++|
T Consensus 24 ~~pS~~~la~~~g~s---~~Tv~~~i~~L~~~G 53 (55)
T PF13730_consen 24 CFPSQETLAKDLGVS---RRTVQRAIKELEEKG 53 (55)
T ss_pred CCcCHHHHHHHHCcC---HHHHHHHHHHHHHCc
Confidence 557788888888874 578888899998887
No 216
>PF12404 DUF3663: Peptidase ; InterPro: IPR008330 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family represents the peptidase B group of leucyl aminopeptidases, which are restricted to the gammaproteobacteria. They contain a C-terminal aminopeptidase catalytic domain and an N-terminal domain of unknown function. They are zinc-dependent exopeptidases (3.4.11.1 from EC) and belong to MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF). They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing, catabolism and degradation of intracellular proteins [, , ]. Leucyl aminopeptidase forms a homohexamer containing two trimers stacked on top of one another []. Each monomer binds two zinc ions. The zinc-binding and catalytic sites are located within the C-terminal catalytic domain []. The same catalytic aminopeptidase domain is found in the other M17 peptidases IPR011356 from INTERPRO. These two groups of aminopeptidases differ by their N-terminal domains. The N-terminal domain in members of IPR011356 from INTERPRO has been implicated in DNA binding [, ] and it is not associated with members of this family which have a different N-terminal domain and therefore are not expected to bind DNA or be involved in transcriptional regulation. In addition, there are related proteins with the same catalytic domain and unique N-terminal sequences unrelated to any of the two N-terminal domains discussed above. For additional information please see [, , , ]. ; GO: 0004177 aminopeptidase activity, 0008235 metalloexopeptidase activity, 0030145 manganese ion binding, 0005737 cytoplasm
Probab=20.34 E-value=1.6e+02 Score=20.13 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHcCCCeEEEee
Q 027620 171 EADGREACKILHAAGPAKVVITS 193 (221)
Q Consensus 171 ~~~~~~a~~~L~~~G~~~VvVT~ 193 (221)
...+.+|+++|-..|++.|-+.+
T Consensus 37 l~~IQrAaRkLd~qGI~~V~L~G 59 (77)
T PF12404_consen 37 LRAIQRAARKLDGQGIKNVALAG 59 (77)
T ss_pred hHHHHHHHHHHhhCCCceEEEec
Confidence 46788999999999999888754
No 217
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=20.25 E-value=1.6e+02 Score=24.90 Aligned_cols=55 Identities=13% Similarity=0.071 Sum_probs=33.3
Q ss_pred ceeeCCHHHHHHHHHHHHhcCcccccEEEEeecCChhHHHHHHHHHHHHHhcCCCC-eEEEcccc
Q 027620 63 KGQVLNGQQLCDLIEGLEANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNL-IYVCDPVM 126 (221)
Q Consensus 63 ~G~~l~~~~i~~~l~~i~~~~~l~~~~v~~G~l~~~~~~~~i~~~i~~ak~~~~~~-~vvlDp~~ 126 (221)
.|+.++.+.+....+.+..++. .+.+|.-. .+.-...+++.++++ |+ .+++|+.+
T Consensus 186 FGE~lp~~~~~~a~~~~~~aDl----llviGTSl---~V~pa~~l~~~a~~~--g~~viiIN~~~ 241 (260)
T cd01409 186 FGENVPRDRVVTAAARLAEADA----LLVLGSSL---MVYSGYRFVLAAAEA--GLPIAIVNIGP 241 (260)
T ss_pred CCCCCCHHHHHHHHHHHhcCCE----EEEeCcCc---eecchhhHHHHHHHC--CCcEEEEcCCC
Confidence 3788887778887777775543 24556522 233334566666655 44 47888754
Done!