BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027621
         (221 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QCA|A Chain A, Quadruple Mutant Q92c, N146f, Y168f, I172v Type Iii Cat
           Complexed With Fusidic Acid. Crystals Grown At Ph 6.3.
           X-Ray Data Collected At Room Temperature
          Length = 213

 Score = 30.0 bits (66), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 139 RYSTFLLLYPSGITSEVGLIYTALPYIKESETYCLRMPNKWNFSFDYFYAAILVLGFY 196
           RY +   L+P G+T E  L  +ALP++   +++ L + N     F  F+A ++ +  Y
Sbjct: 121 RYKSDTKLFPQGVTPENHLFISALPWVN-FDSFNLNVAN-----FTDFFAPVITMAKY 172


>pdb|1CIA|A Chain A, Replacement Of Catalytic Histidine-195 Of Chloramphenicol
           Acetyltransferase: Evidence For A General Base Role For
           Glutamate
          Length = 213

 Score = 28.1 bits (61), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 139 RYSTFLLLYPSGITSEVGLIYTALPYIKESETYCLRMPNKWNFSFDYFYAAILVLGFY 196
           RY +   L+P G+T E  L  +ALP++   +++ L + N     F  ++A I+ +  Y
Sbjct: 121 RYKSDTKLFPQGVTPENHLNISALPWVN-FDSFNLNVAN-----FTDYFAPIITMAKY 172


>pdb|2CLA|A Chain A, Crystal Structure Of The Asp-199-Asn Mutant Of
           Chloramphenicol Acetyltransferase To 2.35 Angstroms
           Resolution. Structural Consequences Of Disruption Of A
           Buried Salt-Bridge
          Length = 213

 Score = 28.1 bits (61), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 139 RYSTFLLLYPSGITSEVGLIYTALPYIKESETYCLRMPNKWNFSFDYFYAAILVLGFY 196
           RY +   L+P G+T E  L  +ALP++   +++ L + N     F  ++A I+ +  Y
Sbjct: 121 RYKSDTKLFPQGVTPENHLNISALPWVN-FDSFNLNVAN-----FTDYFAPIITMAKY 172


>pdb|3CLA|A Chain A, Refined Crystal Structure Of Type Iii Chloramphenicol
           Acetyltransferase At 1.75 Angstroms Resolution
          Length = 213

 Score = 28.1 bits (61), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 139 RYSTFLLLYPSGITSEVGLIYTALPYIKESETYCLRMPNKWNFSFDYFYAAILVLGFY 196
           RY +   L+P G+T E  L  +ALP++   +++ L + N     F  ++A I+ +  Y
Sbjct: 121 RYKSDTKLFPQGVTPENHLNISALPWVN-FDSFNLNVAN-----FTDYFAPIITMAKY 172


>pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus: Internal Aldimine Form
 pdb|3B1C|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus: Internal Aldimine Form
 pdb|3B1C|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus: Internal Aldimine Form
 pdb|3B1C|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus: Internal Aldimine Form
 pdb|3B1D|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: External Aldimine
           Form
 pdb|3B1D|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: External Aldimine
           Form
 pdb|3B1D|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: External Aldimine
           Form
 pdb|3B1D|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: External Aldimine
           Form
 pdb|3B1E|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
           Form
 pdb|3B1E|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
           Form
 pdb|3B1E|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
           Form
 pdb|3B1E|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
           Form
          Length = 392

 Score = 27.7 bits (60), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 21  FAGWAQVLYLALKTLNESGHENVYKAVERPLQLAQ 55
           F  +A VL  A KT N +G +N Y  +E P   AQ
Sbjct: 226 FKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQ 260


>pdb|1CLA|A Chain A, Evidence For Transition-State Stabilization By Serine-148
           In The Catalytic Mechanism Of Chloramphenicol
           Acetyltransferase
          Length = 213

 Score = 27.7 bits (60), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 139 RYSTFLLLYPSGITSEVGLIYTALPYIKESETYCLRMPNKWNFSFDYFYAAILVLGFY 196
           RY +   L+P G+T E  L   ALP++   +++ L + N     F  ++A I+ +  Y
Sbjct: 121 RYKSDTKLFPQGVTPENHLNIAALPWVN-FDSFNLNVAN-----FTDYFAPIITMAKY 172


>pdb|3RZQ|A Chain A, Crystal Structure Of The H233a Mutant Of
           7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
           Cholerae Complexed With Preq0
 pdb|3RZQ|B Chain B, Crystal Structure Of The H233a Mutant Of
           7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
           Cholerae Complexed With Preq0
 pdb|4GHM|A Chain A, Crystal Structure Of The H233a Mutant Of
           7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
           Cholerae Complexed With Preq0
 pdb|4GHM|B Chain B, Crystal Structure Of The H233a Mutant Of
           7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
           Cholerae Complexed With Preq0
          Length = 290

 Score = 27.3 bits (59), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 10  RLYLTAYNWTVFAGWAQVLYLALKTLNESGHENV 43
           +LYL +YN T FA W +V    +  L+    E V
Sbjct: 102 KLYLNSYNQTRFASWDEVQTRLVHDLSACAGETV 135


>pdb|3BP1|A Chain A, Crystal Structure Of Putative 7-Cyano-7-Deazaguanine
           Reductase Quef From Vibrio Cholerae O1 Biovar Eltor
 pdb|3BP1|B Chain B, Crystal Structure Of Putative 7-Cyano-7-Deazaguanine
           Reductase Quef From Vibrio Cholerae O1 Biovar Eltor
 pdb|3BP1|C Chain C, Crystal Structure Of Putative 7-Cyano-7-Deazaguanine
           Reductase Quef From Vibrio Cholerae O1 Biovar Eltor
 pdb|3BP1|D Chain D, Crystal Structure Of Putative 7-Cyano-7-Deazaguanine
           Reductase Quef From Vibrio Cholerae O1 Biovar Eltor
 pdb|4IQI|A Chain A, Crystal Structure Of 7-cyano-7-deazaguanine Reductase,
           Quef From Vibrio Cholerae O1 Biovar El Tor Complexed
           With Cytosine
 pdb|4IQI|B Chain B, Crystal Structure Of 7-cyano-7-deazaguanine Reductase,
           Quef From Vibrio Cholerae O1 Biovar El Tor Complexed
           With Cytosine
          Length = 290

 Score = 27.3 bits (59), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 10  RLYLTAYNWTVFAGWAQVLYLALKTLNESGHENV 43
           +LYL +YN T FA W +V    +  L+    E V
Sbjct: 102 KLYLNSYNQTRFASWDEVQTRLVHDLSACAGETV 135


>pdb|3S19|A Chain A, Crystal Structure Of The R262l Mutant Of
           7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
           Cholerae Complexed With Preq0
 pdb|3S19|B Chain B, Crystal Structure Of The R262l Mutant Of
           7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
           Cholerae Complexed With Preq0
 pdb|3S19|C Chain C, Crystal Structure Of The R262l Mutant Of
           7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
           Cholerae Complexed With Preq0
 pdb|3S19|D Chain D, Crystal Structure Of The R262l Mutant Of
           7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
           Cholerae Complexed With Preq0
 pdb|3UXJ|A Chain A, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
           Quef From Vibrio Cholerae Complexed With Nadp And Preq0
 pdb|3UXJ|B Chain B, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
           Quef From Vibrio Cholerae Complexed With Nadp And Preq0
 pdb|3UXJ|C Chain C, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
           Quef From Vibrio Cholerae Complexed With Nadp And Preq0
 pdb|3UXJ|D Chain D, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
           Quef From Vibrio Cholerae Complexed With Nadp And Preq0
          Length = 290

 Score = 27.3 bits (59), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 10  RLYLTAYNWTVFAGWAQVLYLALKTLNESGHENV 43
           +LYL +YN T FA W +V    +  L+    E V
Sbjct: 102 KLYLNSYNQTRFASWDEVQTRLVHDLSACAGETV 135


>pdb|3RZP|A Chain A, Crystal Structure Of The C194a Mutant Of
           7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
           Cholerae Complexed With Preq1
 pdb|3RZP|B Chain B, Crystal Structure Of The C194a Mutant Of
           7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
           Cholerae Complexed With Preq1
 pdb|3RZP|C Chain C, Crystal Structure Of The C194a Mutant Of
           7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
           Cholerae Complexed With Preq1
 pdb|3RZP|D Chain D, Crystal Structure Of The C194a Mutant Of
           7-Cyano-7-Deazaguanine Reductase, Quef From Vibrio
           Cholerae Complexed With Preq1
 pdb|3RJ4|A Chain A, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
           Quef From Vibrio Cholerae
 pdb|3RJ4|B Chain B, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
           Quef From Vibrio Cholerae
 pdb|3UXV|A Chain A, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
           Quef From Vibrio Cholerae Complexed With Nadp And Preq
 pdb|3UXV|B Chain B, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
           Quef From Vibrio Cholerae Complexed With Nadp And Preq
 pdb|3UXV|C Chain C, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
           Quef From Vibrio Cholerae Complexed With Nadp And Preq
 pdb|3UXV|D Chain D, Crystal Structure Of 7-Cyano-7-Deazaguanine Reductase,
           Quef From Vibrio Cholerae Complexed With Nadp And Preq
          Length = 290

 Score = 27.3 bits (59), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 10  RLYLTAYNWTVFAGWAQVLYLALKTLNESGHENV 43
           +LYL +YN T FA W +V    +  L+    E V
Sbjct: 102 KLYLNSYNQTRFASWDEVQTRLVHDLSACAGETV 135


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,071,004
Number of Sequences: 62578
Number of extensions: 217497
Number of successful extensions: 499
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 493
Number of HSP's gapped (non-prelim): 10
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)