Query 027621
Match_columns 221
No_of_seqs 103 out of 427
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 12:41:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02838 3-hydroxyacyl-CoA deh 100.0 1.6E-79 3.6E-84 526.1 18.4 221 1-221 1-221 (221)
2 KOG3187 Protein tyrosine phosp 100.0 1.4E-69 3E-74 461.4 16.9 219 2-221 2-221 (223)
3 PF04387 PTPLA: Protein tyrosi 100.0 1.3E-65 2.9E-70 423.4 11.2 164 55-219 1-164 (164)
4 COG5198 Ptpl Protein tyrosine 100.0 4E-52 8.6E-57 339.5 15.2 194 8-217 5-199 (209)
5 PF01151 ELO: GNS1/SUR4 family 82.6 32 0.0007 29.9 14.9 125 10-140 36-180 (250)
6 PTZ00251 fatty acid elongase; 50.5 1.4E+02 0.0031 26.6 9.2 124 10-141 60-201 (272)
7 COG3114 CcmD Heme exporter pro 28.9 59 0.0013 23.0 2.5 27 190-217 21-47 (67)
8 PF07297 DPM2: Dolichol phosph 28.1 31 0.00068 25.2 1.1 14 201-214 64-77 (78)
9 PF12669 P12: Virus attachment 20.3 84 0.0018 21.4 2.0 15 199-213 12-26 (58)
10 COG4392 Predicted membrane pro 20.2 1.1E+02 0.0023 23.8 2.7 46 104-155 7-52 (107)
No 1
>PLN02838 3-hydroxyacyl-CoA dehydratase subunit of elongase
Probab=100.00 E-value=1.6e-79 Score=526.13 Aligned_cols=221 Identities=85% Similarity=1.435 Sum_probs=212.2
Q ss_pred CCcccchhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcCcchhhHhhhhHHHHHHHHHHHHHHHhhcccccCccccchhh
Q 027621 1 MAGCLSLLRRLYLTAYNWTVFAGWAQVLYLALKTLNESGHENVYKAVERPLQLAQTAAVLEILHGLLGLVRSPITATLPQ 80 (221)
Q Consensus 1 ~~~~~~~l~~~YL~~YN~~~~~gW~~il~~~~~~~~~~~~~~~~~~v~~~l~~~Q~~a~LEi~H~~~Glvrs~~~~t~~Q 80 (221)
||+--++++|.||++||.+|++||++||++++.++...|.+++|+.+++.++++|++|++||+|+++|+||||+.||++|
T Consensus 1 ~~~~~~~l~~~YL~~YN~~~~~gW~~il~~~~~~~~~~~~~~~~~~v~~~l~~~QtlAilEilHa~~GlVrS~v~~T~~Q 80 (221)
T PLN02838 1 MAGFGSLLRRLYLTVYNWVVFIGWAQVLYLAVTTLKESGHEAVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLPQ 80 (221)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcchHHHH
Confidence 56656778999999999999999999999999998877777899999999999999999999999999999999999999
Q ss_pred hhhcceeeeeeeccCccccchhHHHHHHHHHhhhhhhhhhhhhhhhhhCCCChhhHHhhhcccchhcchhhhHHHHHHHH
Q 027621 81 ISSRLYVTWGILWSFPQTQNHILVSSLVISWSLTEIIRYSFFGMKEALGFAPSWLLWLRYSTFLLLYPSGITSEVGLIYT 160 (221)
Q Consensus 81 v~sR~~iv~~v~~~~p~~~~~~~~~~l~~aWsl~EiiRY~yY~~~l~~~~~p~~L~WLRYt~FivLYPlGv~~E~~~i~~ 160 (221)
|+||++++|+|++..||+++++.++.|++|||++|+||||||+++++.|.+|++|+|||||+|+||||+|+.||+.+||+
T Consensus 81 V~sR~~iv~~v~~~~p~~~~~~~~~~l~~aWs~tEvIRY~yY~~~~~~~~~p~~L~WLRYt~FivLYPlGi~~E~~~i~~ 160 (221)
T PLN02838 81 IGSRLFLTWGILWSFPEVRSHILVTSLVISWSITEIIRYSFFGMKEAFGFAPSWLLWLRYSTFLLLYPTGITSEVGLIYI 160 (221)
T ss_pred HHHHHHHHHHHhhcCcchhcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhccceecchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999865699999999999999999999999999999999
Q ss_pred hchhhhhccceeecCCCCccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHhhccccccC
Q 027621 161 ALPYIKESETYCLRMPNKWNFSFDYFYAAILVLGFYVPGSPHMYTYMLGQRKKALSKSKKE 221 (221)
Q Consensus 161 aLp~~~~~~~~s~~mPN~~nf~f~~~~~l~~~l~~yipg~~~ly~hM~~QRkk~l~~~~~~ 221 (221)
|+|++++++.++.+|||++|++||+++++++++++|+||+|+||+||+|||||+++|+|+|
T Consensus 161 al~~~~~~~~~s~~~Pn~~n~sf~~~~~l~~~l~~YiPg~~~ly~hM~~QRkK~l~~k~~~ 221 (221)
T PLN02838 161 ALPYMKASEKYCLRMPNKWNFSFDYFYASILVLAIYVPGSPHMYSYMLGQRKKALSKSKRE 221 (221)
T ss_pred hchhhhcccccchhcCcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCC
Confidence 9999999999999999999999999999999999999999999999999999999987765
No 2
>KOG3187 consensus Protein tyrosine phosphatase-like protein PTPLA (contains Pro instead of catalytic Arg) [General function prediction only]
Probab=100.00 E-value=1.4e-69 Score=461.40 Aligned_cols=219 Identities=44% Similarity=0.754 Sum_probs=209.5
Q ss_pred CcccchhhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcC-cchhhHhhhhHHHHHHHHHHHHHHHhhcccccCccccchhh
Q 027621 2 AGCLSLLRRLYLTAYNWTVFAGWAQVLYLALKTLNESG-HENVYKAVERPLQLAQTAAVLEILHGLLGLVRSPITATLPQ 80 (221)
Q Consensus 2 ~~~~~~l~~~YL~~YN~~~~~gW~~il~~~~~~~~~~~-~~~~~~~v~~~l~~~Q~~a~LEi~H~~~Glvrs~~~~t~~Q 80 (221)
+.-++.+++.||++||++|++||.+++..+.....++| .+++||++++.++++|++|++|++|+.+|+|+|++.+|++|
T Consensus 2 ~~~l~~~~~~yL~~YNl~~fvgw~~~~l~~~~~~~~~~~~~~~y~si~~~l~~~Qtla~lEi~~~~~g~v~S~~v~t~~Q 81 (223)
T KOG3187|consen 2 SKELGMLKKSYLFLYNLVSFVGWIVLLLATVVLYLTKGSPAVLYDSIEKVLKFCQTLALLEIINASFGLVKSSPVVTLFQ 81 (223)
T ss_pred CCcccchhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCccccHHHHHHHHHHHHHHHHHHHHHHHhccccCCceeeeee
Confidence 44567899999999999999999999999988777777 67799999999999999999999999999999999999999
Q ss_pred hhhcceeeeeeeccCccccchhHHHHHHHHHhhhhhhhhhhhhhhhhhCCCChhhHHhhhcccchhcchhhhHHHHHHHH
Q 027621 81 ISSRLYVTWGILWSFPQTQNHILVSSLVISWSLTEIIRYSFFGMKEALGFAPSWLLWLRYSTFLLLYPSGITSEVGLIYT 160 (221)
Q Consensus 81 v~sR~~iv~~v~~~~p~~~~~~~~~~l~~aWsl~EiiRY~yY~~~l~~~~~p~~L~WLRYt~FivLYPlGv~~E~~~i~~ 160 (221)
|.||++++|++++..|+++++++++.++.+|+++|++||+||++++ ++..|++++|+|||+|++|||+|++||+.++++
T Consensus 82 v~sRl~il~~i~~~~~~~~~~~~~~~l~~~ws~tEIiRY~fY~f~~-~~~~p~~l~wlRYt~Fi~LYP~Gi~~E~l~i~~ 160 (223)
T KOG3187|consen 82 VSSRLFILWGIFHMCSIIQASAVVFFLLIAWSLTEIIRYSFYAFNL-LGVLPKLLTWLRYTLFILLYPIGITSELLTLYA 160 (223)
T ss_pred ecccceehhhhhhccchhhccchHHHHHHHHHHHHHHHHHHHHHHh-ccCCchhhhHhhhhhheeeecceehhhHHHHHH
Confidence 9999999999999999999999999999999999999999999996 788999999999999999999999999999999
Q ss_pred hchhhhhccceeecCCCCccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHhhccccccC
Q 027621 161 ALPYIKESETYCLRMPNKWNFSFDYFYAAILVLGFYVPGSPHMYTYMLGQRKKALSKSKKE 221 (221)
Q Consensus 161 aLp~~~~~~~~s~~mPN~~nf~f~~~~~l~~~l~~yipg~~~ly~hM~~QRkk~l~~~~~~ 221 (221)
|+|+.++++.+|++|||++|++||+++|++++++.|+||+|++|+||.|||||++++++++
T Consensus 161 al~~~~~~~~~sv~~pn~~n~~f~~~~fL~i~ml~Yipgf~~l~~hm~~QRkk~l~~~r~~ 221 (223)
T KOG3187|consen 161 ALPAAGETERFSVVMPNKLNISFDFFSFLWIVMLLYIPGFYQLYSHMLKQRKKILKKKRKK 221 (223)
T ss_pred HHHHhcccceeEEEcCccccchhHHHHHHHHHHHHHHcchHHHHHHHHHHHHhhccccccc
Confidence 9999999999999999999999999999999999999999999999999999999987653
No 3
>PF04387 PTPLA: Protein tyrosine phosphatase-like protein, PTPLA; InterPro: IPR007482 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types [].
Probab=100.00 E-value=1.3e-65 Score=423.44 Aligned_cols=164 Identities=58% Similarity=1.084 Sum_probs=161.5
Q ss_pred HHHHHHHHHHhhcccccCccccchhhhhhcceeeeeeeccCccccchhHHHHHHHHHhhhhhhhhhhhhhhhhhCCCChh
Q 027621 55 QTAAVLEILHGLLGLVRSPITATLPQISSRLYVTWGILWSFPQTQNHILVSSLVISWSLTEIIRYSFFGMKEALGFAPSW 134 (221)
Q Consensus 55 Q~~a~LEi~H~~~Glvrs~~~~t~~Qv~sR~~iv~~v~~~~p~~~~~~~~~~l~~aWsl~EiiRY~yY~~~l~~~~~p~~ 134 (221)
|++|++|++|+++|+||||+.+|++||+||++++|++++..||++++++++.|++|||++|+||||||++++ +|.+|++
T Consensus 1 Q~~a~lEi~h~~~Glv~S~~~~t~~Qv~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsl~EviRY~yY~~~l-~~~~p~~ 79 (164)
T PF04387_consen 1 QTLAVLEILHAALGLVRSPVLTTFMQVFSRLFVVWGVIYPFPEVQSSPAVPLLLIAWSLTEVIRYPYYALKL-LGIVPYW 79 (164)
T ss_pred CchHHHHHHHHHhccccCccHHHHHHHHHHHHeehhhhccccccccccchhhHHHHHHhhhcchhHHHHHHh-cCCCchH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999996 8999999
Q ss_pred hHHhhhcccchhcchhhhHHHHHHHHhchhhhhccceeecCCCCccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Q 027621 135 LLWLRYSTFLLLYPSGITSEVGLIYTALPYIKESETYCLRMPNKWNFSFDYFYAAILVLGFYVPGSPHMYTYMLGQRKKA 214 (221)
Q Consensus 135 L~WLRYt~FivLYPlGv~~E~~~i~~aLp~~~~~~~~s~~mPN~~nf~f~~~~~l~~~l~~yipg~~~ly~hM~~QRkk~ 214 (221)
|+|||||+|+||||+|++||+.++++|+|++++++.++.+|||++|++||+++++++++++|+||+|++|+||+|||||+
T Consensus 80 L~WLRYs~FivLYPlG~~~E~~~~~~al~~~~~~~~~~~~~pn~~n~~~~~~~~~~~~l~~y~pg~~~ly~hM~~qRrK~ 159 (164)
T PF04387_consen 80 LTWLRYSAFIVLYPLGILSELLLIYRALPYIKETKRYSVRMPNSWNFSFSYYYFLIFVLLLYIPGFPFLYSHMLKQRRKK 159 (164)
T ss_pred HHHHHHhhHhhccchHHHHHHHHHHHhCcccccCCeeeeecCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 027621 215 LSKSK 219 (221)
Q Consensus 215 l~~~~ 219 (221)
++|+|
T Consensus 160 l~~~~ 164 (164)
T PF04387_consen 160 LGKKK 164 (164)
T ss_pred hccCC
Confidence 99875
No 4
>COG5198 Ptpl Protein tyrosine phosphatase-like protein (contains Pro instead of catalytic Arg) [General function prediction only]
Probab=100.00 E-value=4e-52 Score=339.52 Aligned_cols=194 Identities=32% Similarity=0.502 Sum_probs=172.2
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHhhhcCcchhhHhhhhHHHHHHHHHHHHHHHhhcccccCccccchhhhhhccee
Q 027621 8 LRRLYLTAYNWTVFAGWAQVLYLALKTLNESGHENVYKAVERPLQLAQTAAVLEILHGLLGLVRSPITATLPQISSRLYV 87 (221)
Q Consensus 8 l~~~YL~~YN~~~~~gW~~il~~~~~~~~~~~~~~~~~~v~~~l~~~Q~~a~LEi~H~~~Glvrs~~~~t~~Qv~sR~~i 87 (221)
++-.||-+||++++.+|.+++.+...-+.+.+++.+|++..+...++|++|++|+.|+..|.|+|+++||.+||.||+++
T Consensus 5 l~isyl~lYN~~s~f~w~~vlll~~lv~~kt~dpa~f~et~~va~lvQt~ai~E~~ns~~g~v~S~~LtTv~Qv~SRl~i 84 (209)
T COG5198 5 LPISYLRLYNTASCFIWCIVLLLASLVFYKTMDPAVFHETLRVAGLVQTFAIMEAANSSAGKVNSRYLTTVMQVISRLFI 84 (209)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHHH
Confidence 45689999999999999999998887777777888999999999999999999999999999999999999999999999
Q ss_pred eeeeeccCccccchhHHHHHHHHHhhhhhhhhhhhhhhhhhCCCChhhHHhhhcccchhcchhhhHHHHHHHHhchhhhh
Q 027621 88 TWGILWSFPQTQNHILVSSLVISWSLTEIIRYSFFGMKEALGFAPSWLLWLRYSTFLLLYPSGITSEVGLIYTALPYIKE 167 (221)
Q Consensus 88 v~~v~~~~p~~~~~~~~~~l~~aWsl~EiiRY~yY~~~l~~~~~p~~L~WLRYt~FivLYPlGv~~E~~~i~~aLp~~~~ 167 (221)
+|||++..-.+-++|.++.+.+|||++|++||.||++++ .| .|..++|+|||+|.+|||+|+++|+.+++.+.--.+.
T Consensus 85 vwgvf~p~~~~i~s~~y~s~~~aWsiteivRYafY~F~l-ng-~p~~l~~lRYNlFlilyPiG~~sE~~~~~~~~naa~~ 162 (209)
T COG5198 85 VWGVFYPYCGIINSWTYPSITTAWSITEIVRYAFYTFRL-NG-IPNTLRVLRYNLFLILYPIGFVSEMYCLRALYNAAGK 162 (209)
T ss_pred HHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHh-cC-CchhhhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 999996555555699999999999999999999999995 55 7999999999999999999999999999987643322
Q ss_pred ccceeecCCCCccccccH-HHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Q 027621 168 SETYCLRMPNKWNFSFDY-FYAAILVLGFYVPGSPHMYTYMLGQRKKALSK 217 (221)
Q Consensus 168 ~~~~s~~mPN~~nf~f~~-~~~l~~~l~~yipg~~~ly~hM~~QRkk~l~~ 217 (221)
. +++ .-.+.+++++|+||+|+||+||++||||..+.
T Consensus 163 --~------------~Sllk~vl~~~ml~YiPGf~~lf~HMlaQRkk~~K~ 199 (209)
T COG5198 163 --I------------FSLLKVVLPIVMLLYIPGFIFLFSHMLAQRKKSRKV 199 (209)
T ss_pred --H------------HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 1 222 24566788999999999999999999998873
No 5
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=82.58 E-value=32 Score=29.94 Aligned_cols=125 Identities=22% Similarity=0.274 Sum_probs=74.9
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHh---h-hcC-----------cchhh--HhhhhHHHHHHHHHHHHHHHhhcccccC
Q 027621 10 RLYLTAYNWTVFAGWAQVLYLALKTL---N-ESG-----------HENVY--KAVERPLQLAQTAAVLEILHGLLGLVRS 72 (221)
Q Consensus 10 ~~YL~~YN~~~~~gW~~il~~~~~~~---~-~~~-----------~~~~~--~~v~~~l~~~Q~~a~LEi~H~~~Glvrs 72 (221)
|.-+.+||+++.+.=.+.+..++.+. . ++| +++.+ +.++...-++=.--..|.+...+=+.|.
T Consensus 36 k~~~~~~N~~l~~~S~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~~~~~~~~~~~~~~~~fylSK~~EllDTvflvLrk 115 (250)
T PF01151_consen 36 KTLIIVYNLFLVVFSAYMFYGILPALFSSLFKGGLYSSFCQPVDFDPDSYSSGRVGFWYWLFYLSKYYELLDTVFLVLRK 115 (250)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45688999999988888777777332 1 111 11111 1222223233344588999999988999
Q ss_pred ccccchhhhh---hcceeeeeeeccCccccchhHHHHHHHHHhhhhhhhhhhhhhhhhhCCCChhhHHhhh
Q 027621 73 PITATLPQIS---SRLYVTWGILWSFPQTQNHILVSSLVISWSLTEIIRYSFFGMKEALGFAPSWLLWLRY 140 (221)
Q Consensus 73 ~~~~t~~Qv~---sR~~iv~~v~~~~p~~~~~~~~~~l~~aWsl~EiiRY~yY~~~l~~~~~p~~L~WLRY 140 (221)
+ ..+++|+. +=....|......|.. +.. .....=+..-++-|+||+.. .+|.......|=||
T Consensus 116 K-~lsfLHvYHH~~~~~~~w~~~~~~~~~--~~~--~~~~~N~~VH~iMY~YY~l~-a~g~~~~~~~~k~~ 180 (250)
T PF01151_consen 116 K-QLSFLHVYHHASTLLYCWISYKYGPGG--QIW--FIAALNSFVHVIMYSYYFLS-ALGIRKVPRWWKKY 180 (250)
T ss_pred C-CcchhHHhhhhhhhhhhhheeeecccc--chh--HHHHHHHHHHHHHHHHHHHH-hcccccchhHHHHH
Confidence 8 78888887 5555666544433322 221 12233367889999999998 46754222444444
No 6
>PTZ00251 fatty acid elongase; Provisional
Probab=50.47 E-value=1.4e+02 Score=26.55 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=73.3
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHH----HhhhcC--------cchh-h-HhhhhHHHHHHHHHHHHHHHhhcccccCccc
Q 027621 10 RLYLTAYNWTVFAGWAQVLYLALK----TLNESG--------HENV-Y-KAVERPLQLAQTAAVLEILHGLLGLVRSPIT 75 (221)
Q Consensus 10 ~~YL~~YN~~~~~gW~~il~~~~~----~~~~~~--------~~~~-~-~~v~~~l~~~Q~~a~LEi~H~~~Glvrs~~~ 75 (221)
|.-+.+||++|.+.=.+.+...+. .....| .++. + ...+...-++=..-..|.+-..+=+.|.+ .
T Consensus 60 r~~l~~yNl~l~v~s~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~~~~~~~~~~~~~f~lsK~~El~DTvF~VLRKK-q 138 (272)
T PTZ00251 60 KKCWALWNIGLSVFSMYGVYRVVPPLLNNLRKYGLHDTLCTFREDEFYTGKVGVAMGLFSISKVPEFGDTFFLIMGGK-K 138 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecCCCCcchhHHHHHHHHHHHHHHHHHHHhHhhhhhcCC-C
Confidence 567899999999988777776652 222222 1111 1 23344444444556889999998888888 6
Q ss_pred cchhhhh---hcceeeeeeeccCccccchhHHHHHHHHHhhhhhhhhhhhhhhhhhCCCChhhH-Hhhhc
Q 027621 76 ATLPQIS---SRLYVTWGILWSFPQTQNHILVSSLVISWSLTEIIRYSFFGMKEALGFAPSWLL-WLRYS 141 (221)
Q Consensus 76 ~t~~Qv~---sR~~iv~~v~~~~p~~~~~~~~~~l~~aWsl~EiiRY~yY~~~l~~~~~p~~L~-WLRYt 141 (221)
.++++|. +-.+.+|... .++. +. .......=+..-++=|+||++.. +|..+ ..+ |.||-
T Consensus 139 vsFLHvYHH~~~~~~~w~~~--~~g~--~~-~~~~~~lNs~VH~iMY~YY~lsa-~g~~~-~~~~~kk~I 201 (272)
T PTZ00251 139 LPFLSWFHHVTIFLYAWMSY--QQGS--SI-WICAAAMNYFVHSIMYFYFALSE-AGFKK-LVKPFAMYI 201 (272)
T ss_pred chHHHHHHHHHHHHHHHHHH--hCCC--cH-HHHHHHHHHHHHHHHHHHHHHHh-cCCch-hhhHHHHHH
Confidence 7778876 4444555421 1211 11 11113333567899999999984 66532 233 66663
No 7
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=28.87 E-value=59 Score=23.03 Aligned_cols=27 Identities=19% Similarity=0.068 Sum_probs=19.1
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhhccc
Q 027621 190 ILVLGFYVPGSPHMYTYMLGQRKKALSK 217 (221)
Q Consensus 190 ~~~l~~yipg~~~ly~hM~~QRkk~l~~ 217 (221)
..+-+.++|. -.+..|-.+|||+.|++
T Consensus 21 lA~~~tll~l-~~l~v~sv~qrr~iL~~ 47 (67)
T COG3114 21 LAVGMTLLPL-AVLVVHSVLQRRAILRG 47 (67)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3444455543 35678999999999986
No 8
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=28.07 E-value=31 Score=25.21 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhh
Q 027621 201 PHMYTYMLGQRKKA 214 (221)
Q Consensus 201 ~~ly~hM~~QRkk~ 214 (221)
-++-..|+|++||+
T Consensus 64 ~f~g~vmik~~~kk 77 (78)
T PF07297_consen 64 TFLGYVMIKSKKKK 77 (78)
T ss_pred HHHHHHHhhccccc
Confidence 34567899988853
No 9
>PF12669 P12: Virus attachment protein p12 family
Probab=20.35 E-value=84 Score=21.43 Aligned_cols=15 Identities=13% Similarity=0.053 Sum_probs=11.1
Q ss_pred cHHHHHHHHHHHHHh
Q 027621 199 GSPHMYTYMLGQRKK 213 (221)
Q Consensus 199 g~~~ly~hM~~QRkk 213 (221)
.++.+..+++|++|+
T Consensus 12 ~~~v~~r~~~k~~K~ 26 (58)
T PF12669_consen 12 VAYVAIRKFIKDKKK 26 (58)
T ss_pred HHHHHHHHHHHHhhc
Confidence 445567899999886
No 10
>COG4392 Predicted membrane protein [Function unknown]
Probab=20.15 E-value=1.1e+02 Score=23.83 Aligned_cols=46 Identities=15% Similarity=0.126 Sum_probs=32.7
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhCCCChhhHHhhhcccchhcchhhhHHH
Q 027621 104 VSSLVISWSLTEIIRYSFFGMKEALGFAPSWLLWLRYSTFLLLYPSGITSEV 155 (221)
Q Consensus 104 ~~~l~~aWsl~EiiRY~yY~~~l~~~~~p~~L~WLRYt~FivLYPlGv~~E~ 155 (221)
....+.++.+|-+.||.+..+....+-+|-+..||+|. |.++.+-.
T Consensus 7 ll~Ilgmg~VT~l~R~L~l~~~~~~~LP~~v~~~L~fv------P~a~ltAL 52 (107)
T COG4392 7 LLVILGMGAVTYLPRMLPLILLLKLRLPPWVRRFLSFV------PVAILTAL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhhc------cHHHHHHH
Confidence 44677889999999999998874344455567777773 66665544
Done!