Query 027621
Match_columns 221
No_of_seqs 103 out of 427
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 21:36:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kpa_A ARNO(375-400); hydrolas 16.3 21 0.00071 19.9 -0.7 14 205-218 7-20 (26)
2 4b19_A PEPA1; toxin, toxin apo 9.1 1.2E+02 0.0042 17.3 1.1 14 201-214 17-30 (30)
3 1s99_A YKOF; thiamin-binding p 6.1 1.7E+02 0.0059 23.8 1.1 31 144-174 119-149 (200)
4 2rdd_B UPF0092 membrane protei 5.4 3.5E+02 0.012 15.6 1.8 10 203-212 16-26 (37)
5 2a1i_A DNA excision repair pro 5.2 42 0.0014 26.3 -3.1 16 106-121 114-129 (146)
6 1zoq_C CREB-binding protein, i 4.6 3.1E+02 0.011 17.1 1.3 19 199-217 28-46 (47)
7 1bde_A VPR protein; AIDS, HIV, 4.3 6.7E+02 0.023 14.7 2.6 20 41-60 3-22 (35)
8 1a32_A Ribosomal protein S15; 3.6 3.4E+02 0.012 19.1 1.0 11 206-216 57-67 (88)
9 3im4_C Dual specificity A kina 3.5 3.7E+02 0.013 16.6 1.0 9 109-117 17-25 (45)
10 3h8k_B Autocrine motility fact 3.5 4.3E+02 0.015 14.7 1.1 8 207-214 9-16 (28)
No 1
>2kpa_A ARNO(375-400); hydrolase; NMR {Synthetic} PDB: 2kpb_A
Probab=16.26 E-value=21 Score=19.94 Aligned_cols=14 Identities=43% Similarity=0.427 Sum_probs=11.4
Q ss_pred HHHHHHHHhhcccc
Q 027621 205 TYMLGQRKKALSKS 218 (221)
Q Consensus 205 ~hM~~QRkk~l~~~ 218 (221)
-+|++.|||+...+
T Consensus 7 Ydml~~RKkKi~~~ 20 (26)
T 2kpa_A 7 YEMLAARKKRISVK 20 (26)
T ss_dssp HHHHTCTHHHHHCH
T ss_pred HHHHHHHHHHhccc
Confidence 38999999988754
No 2
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=9.08 E-value=1.2e+02 Score=17.31 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhh
Q 027621 201 PHMYTYMLGQRKKA 214 (221)
Q Consensus 201 ~~ly~hM~~QRkk~ 214 (221)
.-+|+|-++.|.|+
T Consensus 17 valF~hWL~~r~~k 30 (30)
T 4b19_A 17 IAFFSYWLSRRNTK 30 (30)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhccCC
Confidence 35789999998763
No 3
>1s99_A YKOF; thiamin-binding protein, ACT-domain family, ligand binding protein; 1.65A {Bacillus subtilis} SCOP: d.58.48.2 PDB: 1sbr_A* 1s7h_A
Probab=6.11 E-value=1.7e+02 Score=23.82 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=26.0
Q ss_pred chhcchhhhHHHHHHHHhchhhhhccceeec
Q 027621 144 LLLYPSGITSEVGLIYTALPYIKESETYCLR 174 (221)
Q Consensus 144 ivLYPlGv~~E~~~i~~aLp~~~~~~~~s~~ 174 (221)
+-|||+|.--=|-.||..+...|+.|.|.-.
T Consensus 119 fslYpmg~~~ym~~I~~~i~~a~~~g~~~~s 149 (200)
T 1s99_A 119 FALYPMNEPDYMGLIMEAVDIAKAQGTFVQG 149 (200)
T ss_dssp EEEEETTCTTHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEeCCCccHHHHHHHHHHHHHHcCcccCC
Confidence 4589999999999999999999988866433
No 4
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=5.37 E-value=3.5e+02 Score=15.59 Aligned_cols=10 Identities=40% Similarity=0.663 Sum_probs=4.7
Q ss_pred HHHHHHH-HHH
Q 027621 203 MYTYMLG-QRK 212 (221)
Q Consensus 203 ly~hM~~-QRk 212 (221)
+|.-|+| |||
T Consensus 16 fYFl~iRPQ~K 26 (37)
T 2rdd_B 16 FYFMILRPQQK 26 (37)
T ss_dssp HHHHTHHHHHH
T ss_pred HHHHHhhhHHH
Confidence 3444555 444
No 5
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=5.20 E-value=42 Score=26.27 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=13.8
Q ss_pred HHHHHHhhhhhhhhhh
Q 027621 106 SLVISWSLTEIIRYSF 121 (221)
Q Consensus 106 ~l~~aWsl~EiiRY~y 121 (221)
++++|||.-|.-||.=
T Consensus 114 TLiLawS~eEaa~Yle 129 (146)
T 2a1i_A 114 TLILAWSPEEAGRYLE 129 (146)
T ss_dssp EEEEESSHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHH
Confidence 4678999999999974
No 6
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=4.62 E-value=3.1e+02 Score=17.09 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=13.6
Q ss_pred cHHHHHHHHHHHHHhhccc
Q 027621 199 GSPHMYTYMLGQRKKALSK 217 (221)
Q Consensus 199 g~~~ly~hM~~QRkk~l~~ 217 (221)
.=|.++.-.+|||...+.+
T Consensus 28 snPqLMAAfIkQR~~~y~~ 46 (47)
T 1zoq_C 28 SNPQLMAAFIKQRTAKYVA 46 (47)
T ss_dssp TCHHHHHHHHHHTTTCCCC
T ss_pred cCHHHHHHHHHHHHHHhcc
Confidence 3467788888998876543
No 7
>1bde_A VPR protein; AIDS, HIV, viral protein, VPR fragment, helix; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1dsj_A
Probab=4.35 E-value=6.7e+02 Score=14.66 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=15.7
Q ss_pred chhhHhhhhHHHHHHHHHHH
Q 027621 41 ENVYKAVERPLQLAQTAAVL 60 (221)
Q Consensus 41 ~~~~~~v~~~l~~~Q~~a~L 60 (221)
.|+|+.++...++.|-+-++
T Consensus 3 GDTw~GveaiiriLQq~Lf~ 22 (35)
T 1bde_A 3 GDTWAGVEAIIRILQQLLFI 22 (35)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHH
Confidence 57899999999988876544
No 8
>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H
Probab=3.65 E-value=3.4e+02 Score=19.09 Aligned_cols=11 Identities=36% Similarity=0.791 Sum_probs=7.4
Q ss_pred HHHHHHHhhcc
Q 027621 206 YMLGQRKKALS 216 (221)
Q Consensus 206 hM~~QRkk~l~ 216 (221)
-|..||||.|.
T Consensus 57 ~lv~kRrkLL~ 67 (88)
T 1a32_A 57 KMVGKRRRLLA 67 (88)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56677777664
No 9
>3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} PDB: 3tmh_D
Probab=3.54 E-value=3.7e+02 Score=16.60 Aligned_cols=9 Identities=22% Similarity=1.084 Sum_probs=6.3
Q ss_pred HHHhhhhhh
Q 027621 109 ISWSLTEII 117 (221)
Q Consensus 109 ~aWsl~Eii 117 (221)
+||-++|+|
T Consensus 17 MAWqIA~MI 25 (45)
T 3im4_C 17 LAWKIAKMI 25 (45)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 578888744
No 10
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=3.47 E-value=4.3e+02 Score=14.67 Aligned_cols=8 Identities=63% Similarity=0.671 Sum_probs=4.0
Q ss_pred HHHHHHhh
Q 027621 207 MLGQRKKA 214 (221)
Q Consensus 207 M~~QRkk~ 214 (221)
|+.+||..
T Consensus 9 ~Lq~Rk~~ 16 (28)
T 3h8k_B 9 MLVQRKDE 16 (28)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555543
Done!