Query 027621
Match_columns 221
No_of_seqs 103 out of 427
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 21:36:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027621.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027621hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k1va_ a.37.1.1 (A:) Mafg {Mo 15.9 26 0.0019 20.1 1.1 11 208-218 29-39 (41)
2 d1s99a_ d.58.48.2 (A:) Putativ 12.7 31 0.0022 26.2 1.1 30 144-173 111-140 (189)
3 d2e74h1 f.23.27.1 (H:3-29) Pet 11.5 76 0.0056 16.0 2.1 16 102-117 6-21 (27)
4 d2db7a1 a.273.1.1 (A:3-57) Hai 5.3 84 0.0061 18.9 0.5 14 107-120 15-28 (55)
5 d1z9ha1 a.45.1.1 (A:213-373) M 5.3 3.3E+02 0.024 19.2 4.2 37 133-170 21-57 (161)
6 d2a1ia1 c.52.1.20 (A:99-227) D 4.7 22 0.0016 25.5 -3.1 16 106-121 97-112 (129)
7 d1fpsa_ a.128.1.1 (A:) Farnesy 4.4 3.9E+02 0.028 20.7 4.4 15 53-67 80-94 (348)
8 d1i76a_ d.92.1.11 (A:) Neutrop 3.9 2.8E+02 0.021 18.4 2.8 22 55-77 113-134 (163)
9 d1a32a_ a.16.1.2 (A:) Ribosoma 3.7 1.8E+02 0.013 18.6 1.3 13 205-217 55-67 (85)
10 d1rqja_ a.128.1.1 (A:) Farnesy 3.6 2.3E+02 0.017 21.7 2.2 16 52-67 65-80 (299)
No 1
>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.91 E-value=26 Score=20.12 Aligned_cols=11 Identities=36% Similarity=0.637 Sum_probs=8.6
Q ss_pred HHHHHhhcccc
Q 027621 208 LGQRKKALSKS 218 (221)
Q Consensus 208 ~~QRkk~l~~~ 218 (221)
+||||+.|+.+
T Consensus 29 lKqrRRTLKNR 39 (41)
T d1k1va_ 29 LKQRRRTLKNR 39 (41)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHhhhcC
Confidence 78999888764
No 2
>d1s99a_ d.58.48.2 (A:) Putative thiamin/HMP-binding protein YkoF {Bacillus subtilis [TaxId: 1423]}
Probab=12.70 E-value=31 Score=26.23 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=26.2
Q ss_pred chhcchhhhHHHHHHHHhchhhhhccceee
Q 027621 144 LLLYPSGITSEVGLIYTALPYIKESETYCL 173 (221)
Q Consensus 144 ivLYPlGv~~E~~~i~~aLp~~~~~~~~s~ 173 (221)
+-|||+|..=-|--||..+.+.|+.|.|.-
T Consensus 111 fsLYpmg~~d~m~~Iy~~id~~k~~G~~~~ 140 (189)
T d1s99a_ 111 FALYPMNEPDYMGLIMEAVDIAKAQGTFVQ 140 (189)
T ss_dssp EEEEETTCTTHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEecCCccHHHHHHHHHHHHHHcCCCcc
Confidence 568999998889999999999999887644
No 3
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.45 E-value=76 Score=15.99 Aligned_cols=16 Identities=19% Similarity=0.576 Sum_probs=11.0
Q ss_pred hHHHHHHHHHhhhhhh
Q 027621 102 ILVSSLVISWSLTEII 117 (221)
Q Consensus 102 ~~~~~l~~aWsl~Eii 117 (221)
|...+.++.||++-++
T Consensus 6 wv~llvvftwsiamvv 21 (27)
T d2e74h1 6 WVALLVVFTWSIAMVV 21 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhhheeeeEE
Confidence 4455678899987653
No 4
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.28 E-value=84 Score=18.93 Aligned_cols=14 Identities=36% Similarity=0.435 Sum_probs=10.9
Q ss_pred HHHHHhhhhhhhhh
Q 027621 107 LVISWSLTEIIRYS 120 (221)
Q Consensus 107 l~~aWsl~EiiRY~ 120 (221)
+-+.=|..||.||.
T Consensus 15 ~GF~ECa~EV~RyL 28 (55)
T d2db7a1 15 LGFRECLAEVARYL 28 (55)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHh
Confidence 45666899999995
No 5
>d1z9ha1 a.45.1.1 (A:213-373) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}
Probab=5.25 E-value=3.3e+02 Score=19.22 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=19.6
Q ss_pred hhhHHhhhcccchhcchhhhHHHHHHHHhchhhhhccc
Q 027621 133 SWLLWLRYSTFLLLYPSGITSEVGLIYTALPYIKESET 170 (221)
Q Consensus 133 ~~L~WLRYt~FivLYPlGv~~E~~~i~~aLp~~~~~~~ 170 (221)
.|.+|..=.+==.+.|.= ..-+..-+++..|+.+.+.
T Consensus 21 ~Wr~w~d~~lv~~~~p~~-y~t~~~a~~t~~yi~~~~~ 57 (161)
T d1z9ha1 21 KWRQWADDWLVHLISPNV-YRTPTEALASFDYIVREGK 57 (161)
T ss_dssp HHHHHHHHTTGGGHHHHH-SSSHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhhhhhhccHHH-hCCHHHHHHHHHHHhcccc
Confidence 366676655444444442 2223334567777776663
No 6
>d2a1ia1 c.52.1.20 (A:99-227) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.75 E-value=22 Score=25.50 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=13.6
Q ss_pred HHHHHHhhhhhhhhhh
Q 027621 106 SLVISWSLTEIIRYSF 121 (221)
Q Consensus 106 ~l~~aWsl~EiiRY~y 121 (221)
++++|||.-|.-||.=
T Consensus 97 TLilaws~eEaa~YlE 112 (129)
T d2a1ia1 97 TLILAWSPEEAGRYLE 112 (129)
T ss_dssp EEEEESSHHHHHHHHH
T ss_pred EEEEEcCHHHHHHHHH
Confidence 4678999999999963
No 7
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=4.35 E-value=3.9e+02 Score=20.66 Aligned_cols=15 Identities=7% Similarity=0.250 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhc
Q 027621 53 LAQTAAVLEILHGLL 67 (221)
Q Consensus 53 ~~Q~~a~LEi~H~~~ 67 (221)
..+.++++|.+|.+.
T Consensus 80 ~~~~A~avEliH~as 94 (348)
T d1fpsa_ 80 ALAVGWCIELFQAFF 94 (348)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 446788999999985
No 8
>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.91 E-value=2.8e+02 Score=18.44 Aligned_cols=22 Identities=32% Similarity=0.285 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhcccccCccccc
Q 027621 55 QTAAVLEILHGLLGLVRSPITAT 77 (221)
Q Consensus 55 Q~~a~LEi~H~~~Glvrs~~~~t 77 (221)
+..++=|+.|++ ||--++-..+
T Consensus 113 ~~v~~HEiGHaL-GL~H~~~~~s 134 (163)
T d1i76a_ 113 FLVAAHEFGHSL-GLAHSSDPGA 134 (163)
T ss_dssp HHHHHHHHHHHH-TBCCCSCTTS
T ss_pred eeehhhhhhhhh-ccCCCCCCCC
Confidence 567788999987 8876654444
No 9
>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=3.74 E-value=1.8e+02 Score=18.59 Aligned_cols=13 Identities=31% Similarity=0.583 Sum_probs=8.8
Q ss_pred HHHHHHHHhhccc
Q 027621 205 TYMLGQRKKALSK 217 (221)
Q Consensus 205 ~hM~~QRkk~l~~ 217 (221)
..|..||||.|.-
T Consensus 55 ~~lv~~RrklL~Y 67 (85)
T d1a32a_ 55 LKMVGKRRRLLAY 67 (85)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4677788877653
No 10
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=3.64 E-value=2.3e+02 Score=21.66 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhhc
Q 027621 52 QLAQTAAVLEILHGLL 67 (221)
Q Consensus 52 ~~~Q~~a~LEi~H~~~ 67 (221)
...+.++.+|.+|++.
T Consensus 65 ~~~~~A~aiEllH~as 80 (299)
T d1rqja_ 65 TLDAPAAAVECIHAYS 80 (299)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4567889999999874
Done!